Issues

• Analysis module failing in CI

  ciOpenScPCA admin
  AlexsLemonade/OpenScPCA-analysis#1436 · Filter by author github-actions opened on Oct 3, 2026

• Monthly spellcheck results

  OpenScPCA adminspelling
  AlexsLemonade/OpenScPCA-analysis#1434 · Filter by author github-actions opened on Sep 15, 2026

• Evaluate reference approach for annotating osteosarcoma samples

  analysis
  AlexsLemonade/OpenScPCA-analysis#1424 · Filter by author sjspielman opened on Aug 3, 2026
  1

  

• Add script to train SingleR model

  analysis
  AlexsLemonade/OpenScPCA-analysis#1414 · Filter by author sjspielman opened on Jul 6, 2026
  

• Add script to prepare references for use

  analysis
  AlexsLemonade/OpenScPCA-analysis#1413 · Filter by author sjspielman opened on Jul 6, 2026
  1

  

• Update immune cell types file in cell-type-consensus

  AlexsLemonade/OpenScPCA-analysis#1391 · Filter by author allyhawkins opened on Feb 5, 2026
  

• Don't recommend use of osx-64 platform for conda-lock

  AlexsLemonade/OpenScPCA-analysis#1244 · Filter by author sjspielman opened on Jul 30, 2025
  1

• Record project-specific normal reference groups in TSVs

  AlexsLemonade/OpenScPCA-analysis#1239 · Filter by author sjspielman opened on Jul 28, 2025

• Osteosarcoma SCPCAB0027 - Tumor versus Normal cell differentiation and annotation

  analysis
  AlexsLemonade/OpenScPCA-analysis#1193 · Filter by author rs25-code opened on Jul 2, 2025

• Add function to create total CNV column

  analysis
  AlexsLemonade/OpenScPCA-analysis#1157 · Filter by author sjspielman opened on Jun 3, 2025

• Use CNV distributions to identify additional Ewings tumor cells

  AlexsLemonade/OpenScPCA-analysis#1156 · Filter by author sjspielman opened on Jun 3, 2025

• Run inferCNV on neuroblastoma samples

  analysis
  AlexsLemonade/OpenScPCA-analysis#1148 · Filter by author sjspielman opened on Jun 2, 2025

• Explore use of pooled normal reference with inferCNV in solid tumors of interest

  Epic
  AlexsLemonade/OpenScPCA-analysis#1143 · Filter by author sjspielman opened on Jun 2, 2025

• Add wrapper function for running internal references

  analysis
  AlexsLemonade/OpenScPCA-analysis#1130 · Filter by author sjspielman opened on May 15, 2025

• Pilocytic Astrocytoma scRNA Analysis

  analysis
  AlexsLemonade/OpenScPCA-analysis#1121 · Filter by author ShashTrip1 opened on May 7, 2025

• Docs request: Centralized documentation for available results

  OpenScPCA admin
  AlexsLemonade/OpenScPCA-analysis#1119 · Filter by author sjspielman opened on May 6, 2025

• Explore cells that are classified as both immune and tumor in Ewing samples

  analysis
  AlexsLemonade/OpenScPCA-analysis#1087 · Filter by author allyhawkins opened on Mar 20, 2025
  

• Bug report: Zellkonverter/Basilisk initialization in Docker images doesn't work with rstudio users

  bug
  AlexsLemonade/OpenScPCA-analysis#972 · Filter by author jashapiro opened on Jan 3, 2025

• Consider using a converted Seurat object in hello-clusters

  AlexsLemonade/OpenScPCA-analysis#957 · Filter by author sjspielman opened on Dec 20, 2024
  1

• Docs request: "Quick start" guide for technical setup

  AlexsLemonade/OpenScPCA-analysis#948 · Filter by author sjspielman opened on Dec 17, 2024
  1

• Notebook to explore using normal cell references to annotate tumor cell states in Ewing sarcoma samples

  analysis
  AlexsLemonade/OpenScPCA-analysis#941 · Filter by author allyhawkins opened on Dec 13, 2024

• Decrease size of docker image for Ewing's module

  AlexsLemonade/OpenScPCA-analysis#884 · Filter by author allyhawkins opened on Nov 15, 2024
  4

• Integration of the SCPCP000006 Wilms tumor dataset

  analysis
  AlexsLemonade/OpenScPCA-analysis#857 · Filter by author maud-p opened on Nov 5, 2024
  7

• Improve Wilms Tumor Dataset Annotation (SCPCP000006) - explore predicted.score and has_cnv.score thresholds

  analysis
  AlexsLemonade/OpenScPCA-analysis#856 · Filter by author maud-p opened on Nov 5, 2024
  5

• Modify/explore clustering for Wilms tumor annotation (SCPCP000014)

  analysis
  AlexsLemonade/OpenScPCA-analysis#840 · Filter by author JingxuanChen7 opened on Oct 24, 2024