Issues

• scRNA-seq-advanced: investigate changes for harmony 2

  AlexsLemonade/training-modules#1095 · Filter by author jashapiro opened on Sep 29, 2026
  2

• Add C8 to notebooks that introduce msigbdr

  AlexsLemonade/training-modules#1016 · Filter by author sjspielman opened on Jun 11, 2026

• Swap size -> linewidth

  AlexsLemonade/training-modules#1015 · Filter by author sjspielman opened on Jun 10, 2026

• Write slides for spatial workshop

  Epic
  AlexsLemonade/training-modules#1014 · Filter by author sjspielman opened on Jun 8, 2026

• 2026 Intro scRNA-seq workshop fixes

  AlexsLemonade/training-modules#997 · Filter by author sjspielman opened on May 13, 2026
  3

• Potentially update GSEA notebook gmt file handling

  AlexsLemonade/training-modules#991 · Filter by author sjspielman opened on May 7, 2026

• Expand data maintenance documentation

  AlexsLemonade/training-modules#973 · Filter by author sjspielman opened on Apr 17, 2026
  2

  

• Update external workshop instructions for new server

  AlexsLemonade/training-modules#970 · Filter by author sjspielman opened on Apr 17, 2026

• Update spatial cheatsheet links to point to rdrr

  AlexsLemonade/training-modules#963 · Filter by author sjspielman opened on Apr 13, 2026

• Update how we install Python packages in Docker

  AlexsLemonade/training-modules#885 · Filter by author sjspielman opened on Jan 21, 2026

• Ignore data files for gitignore.user

  AlexsLemonade/training-modules#799 · Filter by author jashapiro opened on Aug 21, 2024
  1

• Consider changing default branch to main

  AlexsLemonade/training-modules#750 · Filter by author sjspielman opened on Aug 25, 2023

• What is the future of rdrr?

  AlexsLemonade/training-modules#706 · Filter by author sjspielman opened on Apr 13, 2023
  3

• Cheatsheets reorganized by topic

  nice to have
  AlexsLemonade/training-modules#683 · Filter by author sjspielman opened on Mar 23, 2023

• Nice to have for scAdvanced: resource document covering differential cell type abundance

  AlexsLemonade/training-modules#604 · Filter by author jaclyn-taroni opened on Jan 3, 2023
  1

• Consider a separate directory for reference files

  AlexsLemonade/training-modules#557 · Filter by author sjspielman opened on Sep 23, 2022
  1

• Update links in RNA-seq, pathway-analysis, and machine-learning cheatsheets

  AlexsLemonade/training-modules#528 · Filter by author jaclyn-taroni opened on Mar 3, 2022
  1

• Add rendering of module cheatsheets to make-live workflow

  AlexsLemonade/training-modules#523 · Filter by author jaclyn-taroni opened on Feb 28, 2022

• DESeqDatasetFromMatrix() doesn’t like tibbles?

  AlexsLemonade/training-modules#448 · Filter by author cansavvy opened on Mar 26, 2021
  1

• Fix rendering of character vectors

  AlexsLemonade/training-modules#443 · Filter by author jashapiro opened on Mar 15, 2021
  2

• Decide on consistent terms in intro to R: environment/workspace

  AlexsLemonade/training-modules#413 · Filter by author cansavvy opened on Mar 3, 2021

• Add exercise notebook dev to contributing

  contributing
  AlexsLemonade/training-modules#396 · Filter by author jashapiro opened on Feb 28, 2021

• Add option in make-live.R to only render

  AlexsLemonade/training-modules#389 · Filter by author cansavvy opened on Feb 25, 2021
  1

• Set width parameter for consistent rendering

  AlexsLemonade/training-modules#370 · Filter by author cbethell opened on Feb 22, 2021

• Run two gastric samples for bulk RNA-seq

  AlexsLemonade/training-modules#368 · Filter by author cbethell opened on Feb 22, 2021
  3