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AMR-and-Virulence-factor-visualization-in-R
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AMR-and-Virulence-factor-visualization-in-R
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Example-AMR-data.csv
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AMR-and-Virulence-factor-visualization-in-R
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Example-AMR-data.csv
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1
ID
ID
sample
kit#
Sample Date
Broiler House
Section
Area
Flock Cohort
age
Phase
House temp.
Moisture
pH
Serovar
MLST
AST
validates.species.kraken2
acrA
acrB
acrD
acrE/envC
acrF/envD
acrR/ybaH
actP/yjcG
arsB
arsC
arsH
baeR
baeS
bcr
bhsA/ycfR/comC
comR/ycfQ
copA
corA
corC
corD
cpxA
cpxR
cueP
cueR/ybbI
cuiD
cutA
cutC
cutE/lnt
dsbA
dsbB
dsbC
emmdR
emrA
emrB
emrD
emrR
fabI
fetB/ybbM
fieF/yiip
gesA
gesB
gesC
glpF
golS
golT
ibpA
ibpB
iclR
kpnF
marA
marR
mdfA/cmr
mdtA
mdtB
mdtC
mdtG/yceE
mdtJ/ebrB/ydgF
mdtK/ydhE
mdtM/yjiO
mgtA
mntH/yfeP
mntP/yebN
mntR
modA
modB
modC
modE
nfsA
nikR
ompD/nmpC
ostA/lptD
oxyRkp
pcoA
pcoB
pcoC
pcoD
pcoE
pcoR
pcoS
phoB
phoR
pitA
pmrG
pstA
pstB
pstC
pstS
rcnA/yohM
rcnB/yohN
rcnR/yohL
robA
rpoS
silA
silB
silC
silP
silR
silS
sitA
sitB
sitC
sitD
smvA/emrB
sodA
sodB
soxR
soxS
sugE
tehA
tehB
tolC
ychH
yddg/emrE
ygiW
yieF
yodD
zitB/ybgR
zntA/yhhO
zntR/yhdM
znuA/yebL
znuB/yebI
znuC/yebM
zraP
zraR/hydH
zupT/ygiE
zur/yjbK
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