From f8aeca11e8f60eb3c75c5d30090d38f5225cdb4d Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 7 Sep 2026 16:32:42 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.16.2 → v0.16.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.16.2...v0.16.6)
---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 863ce2d..f0eec94 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -33,7 +33,7 @@ repos:
 
 - repo: https://github.com/astral-sh/ruff-pre-commit
   # Ruff version.
-  rev: v0.16.2
+  rev: v0.16.6
   hooks:
     # Run the linter.
     - id: ruff-check

From 5a115b6b15f4149ef70776854c399d41b4802efa Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 7 Sep 2026 16:35:52 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 README.md | 5 +----
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/README.md b/README.md
index 62fb3ff..f931cef 100644
--- a/README.md
+++ b/README.md
@@ -33,10 +33,7 @@ from pyexpressionatlas import ExpressionAtlasClient
 client = ExpressionAtlasClient(cache_dir="~/.cache/my_custom_cache")
 
 # Search for experiments
-results = client.search_experiments(
-    properties=["cancer", "breast"],
-    species="homo sapiens"
-)
+results = client.search_experiments(properties=["cancer", "breast"], species="homo sapiens")
 print(results)
 ```
     BiocFrame with 208 rows and 4 columns