diff --git a/kb/communities/Clostridium_Thermoanaerobacterium_JN4_GD17_Cellulosic_Biofuel_Coculture.yaml b/kb/communities/Clostridium_Thermoanaerobacterium_JN4_GD17_Cellulosic_Biofuel_Coculture.yaml index d4787ea1..6ce590ea 100644 --- a/kb/communities/Clostridium_Thermoanaerobacterium_JN4_GD17_Cellulosic_Biofuel_Coculture.yaml +++ b/kb/communities/Clostridium_Thermoanaerobacterium_JN4_GD17_Cellulosic_Biofuel_Coculture.yaml @@ -337,6 +337,37 @@ ecological_interactions: evidence_source: IN_VITRO snippet: relieves the carbon catabolite repression of C. thermocellum JN4 explanation: Supports the narrower mechanism that GD17 can also relieve carbon catabolite repression. +cultivation_setup: +- cultivation_mode: BATCH + system_type: SERUM_BOTTLE + operating_temperature: 60.0 + operating_temperature_unit: °C + instrument_detail: >- + Anaerobic tubes or serum bottles of CTFUD medium in a 60 °C incubator, static. The same + conditions were used for each strain alone and for the reconstructed coculture, which is + what makes the monoculture and coculture results in this paper comparable. + notes: >- + "Without agitation" is recorded because it is a choice rather than an omission: these are + thermophilic cellulose degraders and C. thermocellum works through a surface-attached + cellulosome, so leaving the substrate settled is part of the design, not a detail that + went unmentioned. + + No working volume. The source names the vessel type - tubes or serum bottles, either - + but never a fill volume, and the two would not imply the same one. + + Unlike several neighbouring #183 records, the cited conditions are explicitly the + coculture's as well as the monocultures': the sentence names "the reconstructed coculture + of the two bacteria" among what was grown this way. That is the check #529 asks for, and + here it passes on the sentence itself rather than on a member-name count. + evidence: + - reference: PMID:31551972 + supports: SUPPORT + evidence_source: IN_VITRO + snippet: Clostridium thermocellum JN4, T. thermosaccharolyticum GD17 and the reconstructed + coculture of the two bacteria were grown using CTFUD media in anaerobic tubes/serum bottles + in an incubator at 60°C without agitation + explanation: Vessel, medium, temperature and static operation, stated for the coculture itself. + environmental_factors: - name: Cellulose-rich lignocellulosic substrate value: cellulose