diff --git a/kb/communities/Dehalococcoides_Pelobacter_Acetylene_TCE_Coculture.yaml b/kb/communities/Dehalococcoides_Pelobacter_Acetylene_TCE_Coculture.yaml index 24ef5dd7..0348122f 100644 --- a/kb/communities/Dehalococcoides_Pelobacter_Acetylene_TCE_Coculture.yaml +++ b/kb/communities/Dehalococcoides_Pelobacter_Acetylene_TCE_Coculture.yaml @@ -227,6 +227,42 @@ ecological_interactions: evidence_source: IN_VITRO snippet: inhibition was removed by adding Pelobacter SFB93 explanation: Supports SFB93 as a functional partner that can relieve acetylene inhibition. +cultivation_setup: +- cultivation_mode: BATCH + system_type: SERUM_BOTTLE + working_volume: 25.0 + working_volume_unit: mL + operating_temperature: 34.0 + operating_temperature_unit: °C + instrument_detail: >- + 60 mL serum bottles holding 25 mL of artificial bay water medium under an N2 headspace, + static, each strain inoculated at 10% v/v. TCE and acetylene were both supplied at + 0.1 mM - the acetylene is the electron donor and carbon source for Pelobacter, which is + what feeds the dechlorinating partner, so the two amendments together are the coculture + rather than a treatment applied to it. + notes: >- + Static on purpose, as with the thermophilic cellulose coculture: these are strict + anaerobes on volatile substrates in a sealed bottle, and agitation would work against + both the gas balance and the syntrophic exchange. + + Cocultures were carried forward by 5% v/v transfer once 20 μmol TCE had gone to vinyl + chloride and 36 μmol acetylene was depleted, so the batch is serial rather than + single-shot; that is in the description rather than compressed into cultivation_mode, + which has no value for it. + + The monoculture conditions in the same paper - strain 195 and BAV1 on defined medium + under H2/CO2 (80:20), SFB93 alone on ABW - are not recorded here (#529). + evidence: + - reference: PMID:28075122 + supports: SUPPORT + evidence_source: IN_VITRO + snippet: Bacterial cocultures of strains 195 and SFB93 (10% vol/vol inoculation of each bacterium) + were initially established in 60 mL serum bottles containing 25 mL ABW medium with TCE supplied + at a liquid concentration of 0.1 mM (corresponding to 3 μmol TCE per bottle), 0.1 mM acetylene + (corresponding to 0.15 mL gas), and N2 headspace incubated at 34 °C without agitation + explanation: Vessel, working volume, medium, amendments, headspace, temperature and static + operation - stated for the coculture itself. + environmental_factors: - name: Acetylene co-contaminant value: acetylene generated during TCE degradation