diff --git a/kb/communities/Acetylene_Fueled_TCE_Dechlorination_Groundwater_Enrichment.yaml b/kb/communities/Acetylene_Fueled_TCE_Dechlorination_Groundwater_Enrichment.yaml index b52344b3..d8223165 100644 --- a/kb/communities/Acetylene_Fueled_TCE_Dechlorination_Groundwater_Enrichment.yaml +++ b/kb/communities/Acetylene_Fueled_TCE_Dechlorination_Groundwater_Enrichment.yaml @@ -163,6 +163,45 @@ ecological_interactions: snippet: amended with C2H2 as the sole electron donor and organic carbon source explanation: Supports C2H2 as the sole substrate. +cultivation_setup: +- cultivation_mode: BATCH + system_type: SERUM_BOTTLE + working_volume: 20.0 + working_volume_unit: mL + instrument_detail: >- + Gastight 60 mL serum bottles under a 100% nitrogen headspace holding 20 mL of a 1:1 + groundwater/medium mixture, dosed with 0.05 or 0.1 mL of 100% acetylene. Enrichment + cultures were established from NAWC well groundwater with mineral medium for nutrients + and acetylene as the sole electron donor and organic carbon source; bottles were + re-amended once acetylene fell below detection. + notes: >- + Acetylene is in the setup rather than only in the environmental factors because it is the + selective pressure that makes this an enrichment: it is the sole electron donor and the + sole organic carbon source, so the community is defined by what grows on it. Same + reasoning as the TCE/acetylene coculture record. + + A second bottle format appears in the paper - 160 mL bottles with 100 mL liquid - but + only in table captions giving concentrations per bottle, not in the setup narrative, so + the 60 mL microcosm is what is recorded here. + + This one was predicted curatable in #543 and is: an enrichment is by definition grown, + and the source describes establishing and feeding the culture rather than sampling it. + That is the contrast with the two records refused in that issue. + evidence: + - reference: PMID:33531396 + supports: SUPPORT + evidence_source: IN_VITRO + snippet: Anaerobic, acetylenotrophic enrichment cultures were established from groundwater + collected from NAWC wells 36BR-A and 73BR-D2 with the addition of mineral medium to provide + nutrients and C2H2 as the sole electron donor and organic carbon source + explanation: The community was enriched in the laboratory, and on what. + - reference: PMID:33531396 + supports: SUPPORT + evidence_source: IN_VITRO + snippet: Twenty milliliters of the 1:1 groundwater-SeFr1 mixture was then transferred to gastight + 60-ml serum bottles with 100% nitrogen headspace + explanation: Vessel, working volume and headspace. + environmental_factors: - name: Acetylene source value: C2H2 supplied as sole electron donor and carbon source