Hi,
Thanks for your great work in the paper and making this repo open source! I was wondering if you did any special handling of the HEST-1k data containing Xenium 5k data (e.g. the FFPE Human Prostate Adenocarcinoma with 5K Human Pan Tissue and Pathways Panel dataset), since most of the Xenium data in HEST-1k is from the smaller Xenium panel. Or did you decide that focusing your training on HVGs was sufficient to account for the additional genes in the 5k panel?
Thanks!
Hi,
Thanks for your great work in the paper and making this repo open source! I was wondering if you did any special handling of the HEST-1k data containing Xenium 5k data (e.g. the FFPE Human Prostate Adenocarcinoma with 5K Human Pan Tissue and Pathways Panel dataset), since most of the Xenium data in HEST-1k is from the smaller Xenium panel. Or did you decide that focusing your training on HVGs was sufficient to account for the additional genes in the 5k panel?
Thanks!