From 0a570159869f99735bca942ba56cc80b928e9455 Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Tue, 12 May 2026 00:10:26 -0400 Subject: [PATCH 01/12] ENH: configurable dataset map for ZebraSaveIOC - Add `--dataset-map` CLI argument (JSON string) to ZebraSaveIOC that lets users specify a custom {pv_attr_name -> hdf5_dataset_name} mapping at startup. When omitted, the mapping falls back to the built-in SRX defaults chosen by the existing `dev_type` PV (zebra or scaler), preserving full backward compatibility with the behaviour deployed at commit 135d93c. - Add `dataset_map` parameter to `ZebraSaveIOC.__init__` and `_DEFAULT_DATASET_MAPS` class attribute for the two SRX default sets. - Refactor `_get_current_dataset` to iterate the active mapping, producing an HDF5 dataset keyed by the user-supplied names rather than PV attr names. - Fix `saver`: change `mode="x"` (fail-if-exists) to `mode="a"` (append/create) so repeated acquisitions work correctly. - Extend `ZebraWithCaprotoIOC` ophyd device with all data PV components (enc1-3, zebra_time, i0, im, it, sis_time, dev_type). - Add `tests/test_zebra_ioc.py` with three cloud_friendly integration tests: default zebra mapping, default scaler mapping, and custom --dataset-map. - Add pixi workspace configuration with fixed test/dev environments so that `pixi run --environment test pytest` works out of the box. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --- pixi.lock | 7295 +++++++++++++++++++++ pyproject.toml | 29 + src/srx_caproto_iocs/zebra/caproto_ioc.py | 92 +- src/srx_caproto_iocs/zebra/ophyd.py | 19 + tests/conftest.py | 73 +- tests/test_zebra_ioc.py | 101 + 6 files changed, 7575 insertions(+), 34 deletions(-) create mode 100644 pixi.lock create mode 100644 tests/test_zebra_ioc.py diff --git a/pixi.lock b/pixi.lock new file mode 100644 index 0000000..8b5aa06 --- /dev/null +++ b/pixi.lock @@ -0,0 +1,7295 @@ +version: 6 +environments: + default: + channels: + - url: https://conda.anaconda.org/conda-forge/ + indexes: + - https://pypi.org/simple + options: + pypi-prerelease-mode: if-necessary-or-explicit + packages: + linux-64: + - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-auth-0.10.1-ha62d5e7_3.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-cal-0.9.13-h2c9d079_1.conda + - 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Keys are PV attribute names; + #: values are the corresponding HDF5 dataset names written to file. + _DEFAULT_DATASET_MAPS: dict[str, dict[str, str]] = { + DevTypes.ZEBRA.value: { + "enc1": "enc1", + "enc2": "enc2", + "enc3": "enc3", + "zebra_time": "zebra_time", + }, + DevTypes.SCALER.value: { + "i0": "i0", + "im": "im", + "it": "it", + "sis_time": "sis_time", + }, + } + + def __init__( + self, + *args, + dataset_map: Optional[dict[str, str]] = None, + **kwargs, + ): + """Init method. + + Parameters + ---------- + dataset_map : dict, optional + Mapping of PV attribute names to HDF5 dataset names, e.g. + ``{"enc1": "x_pos", "enc2": "y_pos"}``. When *None* (default) + the mapping is chosen automatically based on the ``dev_type`` PV. + """ + self._dataset_map = dataset_map + super().__init__(*args, **kwargs) + async def _get_current_dataset(self, *args, **kwargs): # pylint: disable=unused-argument - # , frame, external_pv="enc1"): - # client_context = Context() - # (pvobject,) = await client_context.get_pvs(self._external_pvs[external_pv]) - # print(f"{pvobject = }") - # # pvobject = pvobjects[0] - # ret = await pvobject.read() - - if self.dev_type.value == DevTypes.ZEBRA.value: - pvnames = ["enc1", "enc2", "enc3", "zebra_time"] + if self._dataset_map is not None: + mapping = self._dataset_map + elif self.dev_type.value == DevTypes.ZEBRA.value: + mapping = self._DEFAULT_DATASET_MAPS[DevTypes.ZEBRA.value] else: - pvnames = ["i0", "im", "it", "sis_time"] + mapping = self._DEFAULT_DATASET_MAPS[DevTypes.SCALER.value] - dataset = {} - for pvname in pvnames: - dataset[pvname] = getattr(self, pvname).value + dataset = { + hdf5_name: getattr(self, pv_attr).value + for pv_attr, hdf5_name in mapping.items() + } print(f"{now()}:\n{dataset}") @@ -193,7 +226,7 @@ def saver(request_queue, response_queue): data = received["data"] # 'frame_number' is not used for this exporter. try: - save_hdf5_zebra(fname=filename, data=data, mode="x") + save_hdf5_zebra(fname=filename, data=data, mode="a") print(f"{now()}: saved data into:\n {filename}") success = True @@ -213,22 +246,21 @@ def saver(request_queue, response_queue): parser, split_args = template_arg_parser( default_prefix="", desc=textwrap.dedent(ZebraSaveIOC.__doc__) ) + + parser.add_argument( + "--dataset-map", + help=( + "JSON mapping of PV attribute names to HDF5 dataset names, " + 'e.g. \'{"enc1": "x_pos", "enc2": "y_pos"}\'. ' + "When omitted, the mapping is chosen from the built-in SRX defaults " + "based on the dev_type PV (zebra or scaler)." + ), + type=json.loads, + default=None, + ) + ioc_options, run_options = check_args(parser, split_args) + dataset_map = parser.parse_args().dataset_map - # external_pv_prefix = ( - # ioc_options["prefix"].replace("{{", "{").replace("}}", "}") - # ) # "XF:05IDD-ES:1{Dev:Zebra2}:" - - # external_pvs = { - # "pulse_step": external_pv_prefix + "PC_PULSE_STEP", - # "data_in_progress": external_pv_prefix + "ARRAY_ACQ", - # "enc1": external_pv_prefix + "PC_ENC1", - # "enc2": external_pv_prefix + "PC_ENC2", - # "enc3": external_pv_prefix + "PC_ENC3", - # "enc4": external_pv_prefix + "PC_ENC4", - # "time": external_pv_prefix + "PC_TIME", - # } - - # ioc = ZebraSaveIOC(external_pvs=external_pvs, **ioc_options) - ioc = ZebraSaveIOC(**ioc_options) + ioc = ZebraSaveIOC(dataset_map=dataset_map, **ioc_options) run(ioc.pvdb, **run_options) diff --git a/src/srx_caproto_iocs/zebra/ophyd.py b/src/srx_caproto_iocs/zebra/ophyd.py index 2c17aa0..ee3f615 100644 --- a/src/srx_caproto_iocs/zebra/ophyd.py +++ b/src/srx_caproto_iocs/zebra/ophyd.py @@ -1,7 +1,26 @@ from __future__ import annotations +from caproto import ChannelType +from ophyd import Component as Cpt +from ophyd import EpicsSignal, EpicsSignalRO + from ..base import OphydDeviceWithCaprotoIOC class ZebraWithCaprotoIOC(OphydDeviceWithCaprotoIOC): """An ophyd Device which works with the Zebra caproto extension IOC.""" + + # Device-type selector (zebra / scaler) + dev_type = Cpt(EpicsSignal, "dev_type", string=True) + + # Zebra position-capture channels + enc1 = Cpt(EpicsSignalRO, "enc1", auto_monitor=False) + enc2 = Cpt(EpicsSignalRO, "enc2", auto_monitor=False) + enc3 = Cpt(EpicsSignalRO, "enc3", auto_monitor=False) + zebra_time = Cpt(EpicsSignalRO, "zebra_time", auto_monitor=False) + + # Scaler channels + i0 = Cpt(EpicsSignalRO, "i0", auto_monitor=False) + im = Cpt(EpicsSignalRO, "im", auto_monitor=False) + it = Cpt(EpicsSignalRO, "it", auto_monitor=False) + sis_time = Cpt(EpicsSignalRO, "sis_time", auto_monitor=False) diff --git a/tests/conftest.py b/tests/conftest.py index a605f72..49bfb1c 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,5 +1,6 @@ from __future__ import annotations +import json import os import socket import string @@ -11,10 +12,14 @@ from srx_caproto_iocs.base import OphydDeviceWithCaprotoIOC from srx_caproto_iocs.example.ophyd import OphydChannelTypes +from srx_caproto_iocs.zebra.ophyd import ZebraWithCaprotoIOC CAPROTO_PV_PREFIX = "BASE:{{Dev:Save1}}:" OPHYD_PV_PREFIX = CAPROTO_PV_PREFIX.replace("{{", "{").replace("}}", "}") +ZEBRA_CAPROTO_PV_PREFIX = "ZEBRA:{{Dev:Save1}}:" +ZEBRA_OPHYD_PV_PREFIX = ZEBRA_CAPROTO_PV_PREFIX.replace("{{", "{").replace("}}", "}") + def get_epics_env(): first_three = ".".join(socket.gethostbyname(socket.gethostname()).split(".")[:3]) @@ -39,16 +44,16 @@ def get_epics_env(): } -def start_ioc_subprocess(ioc_name="srx_caproto_iocs.base", pv_prefix=CAPROTO_PV_PREFIX): +def start_ioc_subprocess(ioc_name="srx_caproto_iocs.base", pv_prefix=CAPROTO_PV_PREFIX, extra_args=()): env = get_epics_env() - command = f"{sys.executable} -m {ioc_name} --prefix={pv_prefix} --list-pvs" + command = [sys.executable, "-m", ioc_name, f"--prefix={pv_prefix}", "--list-pvs", *extra_args] print( - f"\nStarting caproto IOC in via a fixture using the following command:\n\n {command}\n" + f"\nStarting caproto IOC in via a fixture using the following command:\n\n {' '.join(command)}\n" ) os.environ.update(env) return subprocess.Popen( - command.split(), + command, start_new_session=True, stdout=subprocess.PIPE, stderr=subprocess.STDOUT, @@ -113,3 +118,63 @@ def ophyd_channel_types(): for cpt in sorted(dev.component_names): getattr(dev, cpt).put(next(letters)) return dev + + +@pytest.fixture(scope="session") +def zebra_caproto_ioc(wait=5): + p = start_ioc_subprocess( + ioc_name="srx_caproto_iocs.zebra.caproto_ioc", + pv_prefix=ZEBRA_CAPROTO_PV_PREFIX, + ) + + print(f"Wait for {wait} seconds...") + ttime.sleep(wait) + + yield p + + p.terminate() + + std_out, std_err = p.communicate() + std_out = std_out.decode() + sep = "=" * 80 + print(f"STDOUT:\n{sep}\n{std_out}") + print(f"STDERR:\n{sep}\n{std_err}") + + +@pytest.fixture(scope="session") +def zebra_caproto_ioc_custom_map(wait=5): + """ZebraSaveIOC with a custom --dataset-map overriding the SRX defaults.""" + custom_map = {"enc1": "x_pos", "enc2": "y_pos", "enc3": "z_pos", "zebra_time": "t"} + p = start_ioc_subprocess( + ioc_name="srx_caproto_iocs.zebra.caproto_ioc", + pv_prefix="ZEBRA_CUSTOM:{{Dev:Save1}}:", + extra_args=(f"--dataset-map={json.dumps(custom_map)}",), + ) + + print(f"Wait for {wait} seconds...") + ttime.sleep(wait) + + yield p, custom_map + + p.terminate() + + std_out, std_err = p.communicate() + std_out = std_out.decode() + sep = "=" * 80 + print(f"STDOUT:\n{sep}\n{std_out}") + print(f"STDERR:\n{sep}\n{std_err}") + + +@pytest.fixture() +def zebra_ophyd_device(): + dev = ZebraWithCaprotoIOC(ZEBRA_OPHYD_PV_PREFIX, name="zebra_with_caproto_ioc") + yield dev + dev.ioc_stage.put("unstaged") + + +@pytest.fixture() +def zebra_ophyd_device_custom_map(): + prefix = "ZEBRA_CUSTOM:{Dev:Save1}:" + dev = ZebraWithCaprotoIOC(prefix, name="zebra_custom_map") + yield dev + dev.ioc_stage.put("unstaged") diff --git a/tests/test_zebra_ioc.py b/tests/test_zebra_ioc.py new file mode 100644 index 0000000..50792df --- /dev/null +++ b/tests/test_zebra_ioc.py @@ -0,0 +1,101 @@ +from __future__ import annotations + +import uuid +from pathlib import Path + +import h5py +import pytest + + +@pytest.mark.cloud_friendly +def test_zebra_default_map_zebra_dev_type(zebra_caproto_ioc, zebra_ophyd_device): + """Default zebra dev_type writes enc1/enc2/enc3/zebra_time datasets.""" + num_frames = 3 + tmpdirname = f"/tmp/srx-caproto-iocs/{str(uuid.uuid4())[:8]}" + write_dir = Path(tmpdirname) + write_dir.mkdir(parents=True, exist_ok=True) + + dev = zebra_ophyd_device + + # Put some recognisable test values into the data PVs. + dev.enc1.parent # ensure connected + test_values = {"enc1": [1.1], "enc2": [2.2], "enc3": [3.3], "zebra_time": [0.5]} + + dev.write_dir.put(str(write_dir)) + dev.file_name.put(f"test_{uuid.uuid4().hex[:8]}.h5") + dev.set("stage").wait(timeout=10) + + for _ in range(num_frames): + dev.set("acquire").wait(timeout=10) + + dev.set("unstage").wait(timeout=10) + + full_file_path = dev.full_file_path.get() + assert full_file_path, "full_file_path PV is empty" + assert Path(full_file_path).is_file(), f"HDF5 file not found: {full_file_path}" + + with h5py.File(full_file_path, "r") as f: + expected_keys = {"enc1", "enc2", "enc3", "zebra_time"} + assert expected_keys.issubset(set(f.keys())), ( + f"Expected datasets {expected_keys}, got {set(f.keys())}" + ) + + +@pytest.mark.cloud_friendly +def test_zebra_default_map_scaler_dev_type(zebra_caproto_ioc, zebra_ophyd_device): + """Switching dev_type to scaler writes i0/im/it/sis_time datasets.""" + tmpdirname = f"/tmp/srx-caproto-iocs/{str(uuid.uuid4())[:8]}" + write_dir = Path(tmpdirname) + write_dir.mkdir(parents=True, exist_ok=True) + + dev = zebra_ophyd_device + dev.dev_type.put("scaler") + + dev.write_dir.put(str(write_dir)) + dev.file_name.put(f"test_{uuid.uuid4().hex[:8]}.h5") + dev.set("stage").wait(timeout=10) + dev.set("acquire").wait(timeout=10) + dev.set("unstage").wait(timeout=10) + + full_file_path = dev.full_file_path.get() + assert Path(full_file_path).is_file(), f"HDF5 file not found: {full_file_path}" + + with h5py.File(full_file_path, "r") as f: + expected_keys = {"i0", "im", "it", "sis_time"} + assert expected_keys.issubset(set(f.keys())), ( + f"Expected datasets {expected_keys}, got {set(f.keys())}" + ) + + # Reset dev_type back to default. + dev.dev_type.put("zebra") + + +@pytest.mark.cloud_friendly +def test_zebra_custom_dataset_map(zebra_caproto_ioc_custom_map, zebra_ophyd_device_custom_map): + """--dataset-map override produces HDF5 datasets with the custom names.""" + _proc, custom_map = zebra_caproto_ioc_custom_map + expected_hdf5_keys = set(custom_map.values()) + + tmpdirname = f"/tmp/srx-caproto-iocs/{str(uuid.uuid4())[:8]}" + write_dir = Path(tmpdirname) + write_dir.mkdir(parents=True, exist_ok=True) + + dev = zebra_ophyd_device_custom_map + dev.write_dir.put(str(write_dir)) + dev.file_name.put(f"test_{uuid.uuid4().hex[:8]}.h5") + dev.set("stage").wait(timeout=10) + dev.set("acquire").wait(timeout=10) + dev.set("unstage").wait(timeout=10) + + full_file_path = dev.full_file_path.get() + assert Path(full_file_path).is_file(), f"HDF5 file not found: {full_file_path}" + + with h5py.File(full_file_path, "r") as f: + assert expected_hdf5_keys.issubset(set(f.keys())), ( + f"Expected custom datasets {expected_hdf5_keys}, got {set(f.keys())}" + ) + # Original PV names must NOT appear as dataset names. + pv_attr_names = set(custom_map.keys()) + renamed = pv_attr_names - expected_hdf5_keys + for name in renamed: + assert name not in f, f"PV attr name '{name}' should not appear as a dataset key" From 8245c94d4fdbbd08685615e3230bd430c5d239bb Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Tue, 12 May 2026 00:25:37 -0400 Subject: [PATCH 02/12] Fix pre-commit/ruff formatting and codespell issues - Remove unused `ChannelType` import from zebra/ophyd.py - Replace `Optional[dict[str, str]]` with `dict[str, str] | None` (UP007) - Remove useless expression and unused variable in test_zebra_ioc.py (B018, F841) - Apply ruff-format line-wrapping to conftest.py and test_zebra_ioc.py - Remove `@pytest.fixture()` parens where not needed (PT001) in conftest.py - Add `astroid` to codespell ignore list (false positive in pixi.lock) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --- .pre-commit-config.yaml | 1 + src/srx_caproto_iocs/zebra/caproto_ioc.py | 3 +-- src/srx_caproto_iocs/zebra/ophyd.py | 1 - tests/conftest.py | 21 +++++++++++++++------ tests/test_zebra_ioc.py | 12 ++++++------ 5 files changed, 23 insertions(+), 15 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index c306942..36832a5 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -59,6 +59,7 @@ repos: rev: "v2.3.0" hooks: - id: codespell + args: ["--ignore-words-list=astroid"] - repo: https://github.com/shellcheck-py/shellcheck-py rev: "v0.10.0.1" diff --git a/src/srx_caproto_iocs/zebra/caproto_ioc.py b/src/srx_caproto_iocs/zebra/caproto_ioc.py index 54dbed9..549914b 100644 --- a/src/srx_caproto_iocs/zebra/caproto_ioc.py +++ b/src/srx_caproto_iocs/zebra/caproto_ioc.py @@ -4,7 +4,6 @@ import json import textwrap from enum import Enum -from typing import Optional from caproto import ChannelType from caproto.server import pvproperty, run, template_arg_parser @@ -185,7 +184,7 @@ class ZebraSaveIOC(CaprotoSaveIOC): def __init__( self, *args, - dataset_map: Optional[dict[str, str]] = None, + dataset_map: dict[str, str] | None = None, **kwargs, ): """Init method. diff --git a/src/srx_caproto_iocs/zebra/ophyd.py b/src/srx_caproto_iocs/zebra/ophyd.py index ee3f615..c1367ee 100644 --- a/src/srx_caproto_iocs/zebra/ophyd.py +++ b/src/srx_caproto_iocs/zebra/ophyd.py @@ -1,6 +1,5 @@ from __future__ import annotations -from caproto import ChannelType from ophyd import Component as Cpt from ophyd import EpicsSignal, EpicsSignalRO diff --git a/tests/conftest.py b/tests/conftest.py index 49bfb1c..dc4fb80 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -44,10 +44,19 @@ def get_epics_env(): } -def start_ioc_subprocess(ioc_name="srx_caproto_iocs.base", pv_prefix=CAPROTO_PV_PREFIX, extra_args=()): +def start_ioc_subprocess( + ioc_name="srx_caproto_iocs.base", pv_prefix=CAPROTO_PV_PREFIX, extra_args=() +): env = get_epics_env() - command = [sys.executable, "-m", ioc_name, f"--prefix={pv_prefix}", "--list-pvs", *extra_args] + command = [ + sys.executable, + "-m", + ioc_name, + f"--prefix={pv_prefix}", + "--list-pvs", + *extra_args, + ] print( f"\nStarting caproto IOC in via a fixture using the following command:\n\n {' '.join(command)}\n" ) @@ -82,7 +91,7 @@ def base_caproto_ioc(wait=5): print(f"STDERR:\n{sep}\n{std_err}") -@pytest.fixture() +@pytest.fixture def base_ophyd_device(): dev = OphydDeviceWithCaprotoIOC( OPHYD_PV_PREFIX, name="ophyd_device_with_caproto_ioc" @@ -111,7 +120,7 @@ def caproto_ioc_channel_types(wait=5): print(f"STDERR:\n{sep}\n{std_err}") -@pytest.fixture() +@pytest.fixture def ophyd_channel_types(): dev = OphydChannelTypes(OPHYD_PV_PREFIX, name="ophyd_channel_type") letters = iter(string.ascii_letters) @@ -165,14 +174,14 @@ def zebra_caproto_ioc_custom_map(wait=5): print(f"STDERR:\n{sep}\n{std_err}") -@pytest.fixture() +@pytest.fixture def zebra_ophyd_device(): dev = ZebraWithCaprotoIOC(ZEBRA_OPHYD_PV_PREFIX, name="zebra_with_caproto_ioc") yield dev dev.ioc_stage.put("unstaged") -@pytest.fixture() +@pytest.fixture def zebra_ophyd_device_custom_map(): prefix = "ZEBRA_CUSTOM:{Dev:Save1}:" dev = ZebraWithCaprotoIOC(prefix, name="zebra_custom_map") diff --git a/tests/test_zebra_ioc.py b/tests/test_zebra_ioc.py index 50792df..3b26801 100644 --- a/tests/test_zebra_ioc.py +++ b/tests/test_zebra_ioc.py @@ -17,10 +17,6 @@ def test_zebra_default_map_zebra_dev_type(zebra_caproto_ioc, zebra_ophyd_device) dev = zebra_ophyd_device - # Put some recognisable test values into the data PVs. - dev.enc1.parent # ensure connected - test_values = {"enc1": [1.1], "enc2": [2.2], "enc3": [3.3], "zebra_time": [0.5]} - dev.write_dir.put(str(write_dir)) dev.file_name.put(f"test_{uuid.uuid4().hex[:8]}.h5") dev.set("stage").wait(timeout=10) @@ -71,7 +67,9 @@ def test_zebra_default_map_scaler_dev_type(zebra_caproto_ioc, zebra_ophyd_device @pytest.mark.cloud_friendly -def test_zebra_custom_dataset_map(zebra_caproto_ioc_custom_map, zebra_ophyd_device_custom_map): +def test_zebra_custom_dataset_map( + zebra_caproto_ioc_custom_map, zebra_ophyd_device_custom_map +): """--dataset-map override produces HDF5 datasets with the custom names.""" _proc, custom_map = zebra_caproto_ioc_custom_map expected_hdf5_keys = set(custom_map.values()) @@ -98,4 +96,6 @@ def test_zebra_custom_dataset_map(zebra_caproto_ioc_custom_map, zebra_ophyd_devi pv_attr_names = set(custom_map.keys()) renamed = pv_attr_names - expected_hdf5_keys for name in renamed: - assert name not in f, f"PV attr name '{name}' should not appear as a dataset key" + assert name not in f, ( + f"PV attr name '{name}' should not appear as a dataset key" + ) From 1104cf33965f70a51fca4f087bad160d53a91c3d Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Tue, 12 May 2026 00:28:41 -0400 Subject: [PATCH 03/12] Autoupdate pre-commit hooks and fix new ruff violations MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit - Run pre-commit autoupdate (ruff v0.4.5→v0.15.12, codespell v2.3.0→v2.4.2, blacken-docs, pre-commit-hooks, shellcheck, validate-pyproject, check-jsonschema) - Fix SIM103: inline boolean return in base.py callback - Fix PT028: remove default args from test_base_ophyd_templates signature, move num_frames/remove to local variables inside the function - Fix PT023: add () to @pytest.mark decorators in test_base_ophyd.py and test_string_ioc.py - Apply ruff-format reformatting Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --- .pre-commit-config.yaml | 14 +++++++------- src/srx_caproto_iocs/base.py | 4 +--- tests/test_base_ophyd.py | 8 ++++---- tests/test_string_ioc.py | 10 +++++----- 4 files changed, 17 insertions(+), 19 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 36832a5..0ce8bc1 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -4,13 +4,13 @@ ci: repos: - repo: https://github.com/adamchainz/blacken-docs - rev: "1.16.0" + rev: "1.20.0" hooks: - id: blacken-docs additional_dependencies: [black==23.*] - repo: https://github.com/pre-commit/pre-commit-hooks - rev: "v4.6.0" + rev: "v6.0.0" hooks: - id: check-added-large-files - id: check-case-conflict @@ -40,7 +40,7 @@ repos: args: [--prose-wrap=always] - repo: https://github.com/astral-sh/ruff-pre-commit - rev: "v0.4.5" + rev: "v0.15.12" hooks: - id: ruff args: ["--fix", "--show-fixes"] @@ -56,13 +56,13 @@ repos: # - pytest - repo: https://github.com/codespell-project/codespell - rev: "v2.3.0" + rev: "v2.4.2" hooks: - id: codespell args: ["--ignore-words-list=astroid"] - repo: https://github.com/shellcheck-py/shellcheck-py - rev: "v0.10.0.1" + rev: "v0.11.0.1" hooks: - id: shellcheck @@ -75,13 +75,13 @@ repos: exclude: .pre-commit-config.yaml - repo: https://github.com/abravalheri/validate-pyproject - rev: "v0.18" + rev: "v0.25" hooks: - id: validate-pyproject additional_dependencies: ["validate-pyproject-schema-store[all]"] - repo: https://github.com/python-jsonschema/check-jsonschema - rev: "0.28.4" + rev: "0.37.2" hooks: - id: check-dependabot - id: check-github-workflows diff --git a/src/srx_caproto_iocs/base.py b/src/srx_caproto_iocs/base.py index a50ccf7..b4ef0e2 100644 --- a/src/srx_caproto_iocs/base.py +++ b/src/srx_caproto_iocs/base.py @@ -272,9 +272,7 @@ def set(self, command): def cb(value, old_value, **kwargs): # pylint: disable=unused-argument # print(f"{now()}: {old_value} -> {value}") - if value == expected_new_value and old_value == expected_old_value: - return True - return False + return value == expected_new_value and old_value == expected_old_value st = SubscriptionStatus(obj, callback=cb, run=False) # print(f"{now()}: {cmd = }") diff --git a/tests/test_base_ophyd.py b/tests/test_base_ophyd.py index 7e514bd..d525ed2 100644 --- a/tests/test_base_ophyd.py +++ b/tests/test_base_ophyd.py @@ -12,13 +12,13 @@ from srx_caproto_iocs.utils import now -@pytest.mark.cloud_friendly() +@pytest.mark.cloud_friendly @pytest.mark.parametrize( "date_template", ["%Y/%m/", "%Y/%m/%d", "mydir/%Y/%m/%d", "disguised_spaces_%c"] ) -def test_base_ophyd_templates( - base_caproto_ioc, base_ophyd_device, date_template, num_frames=50, remove=False -): +def test_base_ophyd_templates(base_caproto_ioc, base_ophyd_device, date_template): + num_frames = 50 + remove = False tmpdirname = f"/tmp/srx-caproto-iocs/{str(uuid.uuid4())[:2]}" date = now(as_object=True) write_dir_root = Path(tmpdirname) diff --git a/tests/test_string_ioc.py b/tests/test_string_ioc.py index af2e46c..0a80037 100644 --- a/tests/test_string_ioc.py +++ b/tests/test_string_ioc.py @@ -11,7 +11,7 @@ STRING_LONGER = string.ascii_letters -@pytest.mark.cloud_friendly() +@pytest.mark.cloud_friendly @pytest.mark.parametrize("value", [STRING_39, STRING_LONGER]) def test_strings( caproto_ioc_channel_types, @@ -47,8 +47,8 @@ def test_strings( ophyd_channel_types.char_type.put(value) -@pytest.mark.cloud_friendly() -@pytest.mark.needs_epics_core() +@pytest.mark.cloud_friendly +@pytest.mark.needs_epics_core def test_cainfo(caproto_ioc_channel_types, ophyd_channel_types): for cpt in sorted(ophyd_channel_types.component_names): command = ["cainfo", getattr(ophyd_channel_types, cpt).pvname] @@ -74,8 +74,8 @@ def test_cainfo(caproto_ioc_channel_types, ophyd_channel_types): assert "Native data type: DBF_CHAR" in stdout -@pytest.mark.cloud_friendly() -@pytest.mark.needs_epics_core() +@pytest.mark.cloud_friendly +@pytest.mark.needs_epics_core @pytest.mark.parametrize("value", [STRING_39, STRING_LONGER]) def test_caput(caproto_ioc_channel_types, ophyd_channel_types, value): option = "" From c5033e1512972e2c3eca22f94b39b6e44e61ec69 Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Tue, 12 May 2026 00:36:27 -0400 Subject: [PATCH 04/12] Fix pylint W0621: rename dataset_map local var in __main__ to dataset_map_arg MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Avoids redefined-outer-name warning — the __init__ parameter 'dataset_map' was shadowing the module-level variable of the same name on line 262. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --- src/srx_caproto_iocs/zebra/caproto_ioc.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/srx_caproto_iocs/zebra/caproto_ioc.py b/src/srx_caproto_iocs/zebra/caproto_ioc.py index 549914b..e875dfe 100644 --- a/src/srx_caproto_iocs/zebra/caproto_ioc.py +++ b/src/srx_caproto_iocs/zebra/caproto_ioc.py @@ -259,7 +259,7 @@ def saver(request_queue, response_queue): ) ioc_options, run_options = check_args(parser, split_args) - dataset_map = parser.parse_args().dataset_map + dataset_map_arg = parser.parse_args().dataset_map - ioc = ZebraSaveIOC(dataset_map=dataset_map, **ioc_options) + ioc = ZebraSaveIOC(dataset_map=dataset_map_arg, **ioc_options) run(ioc.pvdb, **run_options) From c3fa415d0f5826c1868e8eb66b3b8a812d53e0a9 Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Tue, 12 May 2026 00:40:22 -0400 Subject: [PATCH 05/12] Update minimum Python requirement to 3.10+ - requires-python: >=3.8 -> >=3.10 - Remove Python 3.8 and 3.9 from classifiers - Update mypy python_version: 3.8 -> 3.10 - Update CI matrix: [3.8, 3.9, 3.10, 3.11] -> [3.10, 3.11, 3.12] Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --- .github/workflows/ci.yml | 2 +- pyproject.toml | 6 ++---- 2 files changed, 3 insertions(+), 5 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index ecd49f6..1372b5c 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -43,7 +43,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ["3.8", "3.9", "3.10", "3.11"] + python-version: ["3.10", "3.11", "3.12"] # runs-on: [ubuntu-latest, macos-latest, windows-latest] runs-on: [ubuntu-latest] diff --git a/pyproject.toml b/pyproject.toml index 15624a8..a2ac07e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,7 +11,7 @@ authors = [ description = "Caproto IOCs for the NSLS-II SRX beamline" readme = "README.md" license.file = "LICENSE" -requires-python = ">=3.8" +requires-python = ">=3.10" classifiers = [ "Development Status :: 1 - Planning", "Intended Audience :: Science/Research", @@ -21,8 +21,6 @@ classifiers = [ "Programming Language :: Python", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3 :: Only", - "Programming Language :: Python :: 3.8", - "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", "Programming Language :: Python :: 3.12", @@ -104,7 +102,7 @@ report.exclude_also = [ [tool.mypy] files = ["src", "tests"] -python_version = "3.8" +python_version = "3.10" warn_unused_configs = true strict = true enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"] From ca4279f6ddd06e8b73c3c8768c77571b8e99b3c3 Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Tue, 12 May 2026 00:50:17 -0400 Subject: [PATCH 06/12] Fix pixi test task: remove unsupported {args} template from pytest cmd The {args} placeholder syntax is not supported by this version of pixi's shell parser. Use plain 'pytest' instead; extra args can be passed via 'pixi run test -- ' if needed. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index a2ac07e..d890acd 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -187,7 +187,7 @@ docs = { features = ["docs"], solve-group = "default" } test = { features = ["test"], solve-group = "default" } [tool.pixi.tasks] -test = { cmd = "pytest {args}", description = "Run the test suite" } +test = { cmd = "pytest", description = "Run the test suite" } [tool.pixi.dependencies] pip = ">=26.1.1,<27" From c7504df63415494c91fc0999046815624b5ca8b6 Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Tue, 12 May 2026 10:17:35 -0400 Subject: [PATCH 07/12] Fix CI: always run checks job on PRs, limit push trigger to main MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The checks job had an 'if' condition that skipped it for same-repo PRs (to avoid duplicate runs on branch push). This meant tests never appeared in the PR view — only the Format job was visible. Fix: - Remove the 'if' condition from checks so it always runs on PRs - Restrict push trigger to main branch only (avoids duplicate runs on feature branch pushes while keeping tests visible on PRs) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --- .github/workflows/ci.yml | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 1372b5c..62343e8 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -4,6 +4,8 @@ on: workflow_dispatch: pull_request: push: + branches: + - main concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -32,11 +34,6 @@ jobs: pipx run nox -s pylint checks: - # pull requests are a duplicate of a branch push if within the same repo. - if: - github.event_name != 'pull_request' || - github.event.pull_request.head.repo.full_name != github.repository - name: Check Python ${{ matrix.python-version }} on ${{ matrix.runs-on }} runs-on: ${{ matrix.runs-on }} needs: [pre-commit] From 51ba829ae4ab622f312673a852bea2a9db46b860 Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Tue, 12 May 2026 11:54:36 -0400 Subject: [PATCH 08/12] Fix hanging CI tests: add timeouts and EPICS_CA_ADDR_LIST for client Root causes of hanging: 1. put()/get() calls had no timeout, blocking forever if EPICS CA could not connect in the CI network environment 2. Only server-side EPICS_CAS_* env vars were set; the ophyd/pyepics client also needs EPICS_CA_ADDR_LIST to find the IOC 3. No per-test timeout, so a single hang blocks the job for 6 hours Fixes: - conftest.py: add EPICS_CA_ADDR_LIST + EPICS_CA_AUTO_ADDR_LIST=no to get_epics_env() so the client knows where to search - conftest.py: add wait_for_connection(timeout=30) in zebra ophyd fixtures so connection failures surface immediately with clear errors - conftest.py: add timeout=10 to teardown put() calls - test_zebra_ioc.py: add timeout=10 to all put()/get() calls - base.py: add timeout=10 to obj.put(cmd) inside set() - pyproject.toml: add pytest-timeout>=2 to test deps; set global --timeout=120 so any hung test is killed after 2 minutes Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --- pixi.lock | 6 +++--- pyproject.toml | 3 ++- src/srx_caproto_iocs/base.py | 2 +- tests/conftest.py | 24 ++++++++++-------------- tests/test_zebra_ioc.py | 22 +++++++++++----------- 5 files changed, 27 insertions(+), 30 deletions(-) diff --git a/pixi.lock b/pixi.lock index 8b5aa06..846f2f7 100644 --- a/pixi.lock +++ b/pixi.lock @@ -6616,8 +6616,8 @@ packages: requires_python: '>=3.9' - pypi: ./ name: srx-caproto-iocs - version: 0.1.dev81+g71cca67b9.d20260512 - sha256: 55d228161a6c6bddff4946dc97be2b0858c4baa7662aa794312a7ff068617f81 + version: 0.1.dev86+gc3fa415d0.d20260512 + sha256: 3ffe1859f6ecc809a989b6ae56ca3219daff0c83c5dcbf12127fe98f2f0b41bb requires_dist: - caproto - h5py @@ -6639,7 +6639,7 @@ packages: - sphinx>=7.0 ; extra == 'docs' - pytest-cov>=3 ; extra == 'test' - pytest>=6 ; extra == 'test' - requires_python: '>=3.8' + requires_python: '>=3.10' - conda: https://conda.anaconda.org/conda-forge/noarch/stack_data-0.6.3-pyhd8ed1ab_1.conda sha256: 570da295d421661af487f1595045760526964f41471021056e993e73089e9c41 md5: b1b505328da7a6b246787df4b5a49fbc diff --git a/pyproject.toml b/pyproject.toml index d890acd..8d57dbd 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -42,6 +42,7 @@ dependencies = [ test = [ "pytest >=6", "pytest-cov >=3", + "pytest-timeout >=2", ] dev = [ "ipython", @@ -77,7 +78,7 @@ scripts.test = "pytest {args}" [tool.pytest.ini_options] minversion = "6.0" -addopts = ["-ra", "--showlocals", "--strict-markers", "--strict-config"] +addopts = ["-ra", "--showlocals", "--strict-markers", "--strict-config", "--timeout=120"] xfail_strict = true filterwarnings = [ "error", diff --git a/src/srx_caproto_iocs/base.py b/src/srx_caproto_iocs/base.py index b4ef0e2..0325b4b 100644 --- a/src/srx_caproto_iocs/base.py +++ b/src/srx_caproto_iocs/base.py @@ -276,7 +276,7 @@ def cb(value, old_value, **kwargs): st = SubscriptionStatus(obj, callback=cb, run=False) # print(f"{now()}: {cmd = }") - obj.put(cmd) + obj.put(cmd, timeout=10) return st diff --git a/tests/conftest.py b/tests/conftest.py index dc4fb80..76ef7d7 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -27,20 +27,14 @@ def get_epics_env(): print(f"{broadcast = }") - # from pprint import pformat - # import netifaces - # interfaces = netifaces.interfaces() - # print(f"{interfaces = }") - # for interface in interfaces: - # addrs = netifaces.ifaddresses(interface) - # try: - # print(f"{interface = }: {pformat(addrs[netifaces.AF_INET])}") - # except Exception as e: - # print(f"{interface = }: exception:\n {e}") - + addr_list = os.getenv("EPICS_CA_ADDR_LIST", broadcast) return { - "EPICS_CAS_BEACON_ADDR_LIST": os.getenv("EPICS_CA_ADDR_LIST", broadcast), + # Server-side: where the IOC sends beacons + "EPICS_CAS_BEACON_ADDR_LIST": addr_list, "EPICS_CAS_AUTO_BEACON_ADDR_LIST": "no", + # Client-side: where ophyd/pyepics searches for IOCs + "EPICS_CA_ADDR_LIST": addr_list, + "EPICS_CA_AUTO_ADDR_LIST": "no", } @@ -177,13 +171,15 @@ def zebra_caproto_ioc_custom_map(wait=5): @pytest.fixture def zebra_ophyd_device(): dev = ZebraWithCaprotoIOC(ZEBRA_OPHYD_PV_PREFIX, name="zebra_with_caproto_ioc") + dev.wait_for_connection(timeout=30) yield dev - dev.ioc_stage.put("unstaged") + dev.ioc_stage.put("unstaged", timeout=10) @pytest.fixture def zebra_ophyd_device_custom_map(): prefix = "ZEBRA_CUSTOM:{Dev:Save1}:" dev = ZebraWithCaprotoIOC(prefix, name="zebra_custom_map") + dev.wait_for_connection(timeout=30) yield dev - dev.ioc_stage.put("unstaged") + dev.ioc_stage.put("unstaged", timeout=10) diff --git a/tests/test_zebra_ioc.py b/tests/test_zebra_ioc.py index 3b26801..bcdac8d 100644 --- a/tests/test_zebra_ioc.py +++ b/tests/test_zebra_ioc.py @@ -17,8 +17,8 @@ def test_zebra_default_map_zebra_dev_type(zebra_caproto_ioc, zebra_ophyd_device) dev = zebra_ophyd_device - dev.write_dir.put(str(write_dir)) - dev.file_name.put(f"test_{uuid.uuid4().hex[:8]}.h5") + dev.write_dir.put(str(write_dir), timeout=10) + dev.file_name.put(f"test_{uuid.uuid4().hex[:8]}.h5", timeout=10) dev.set("stage").wait(timeout=10) for _ in range(num_frames): @@ -26,7 +26,7 @@ def test_zebra_default_map_zebra_dev_type(zebra_caproto_ioc, zebra_ophyd_device) dev.set("unstage").wait(timeout=10) - full_file_path = dev.full_file_path.get() + full_file_path = dev.full_file_path.get(timeout=10) assert full_file_path, "full_file_path PV is empty" assert Path(full_file_path).is_file(), f"HDF5 file not found: {full_file_path}" @@ -45,15 +45,15 @@ def test_zebra_default_map_scaler_dev_type(zebra_caproto_ioc, zebra_ophyd_device write_dir.mkdir(parents=True, exist_ok=True) dev = zebra_ophyd_device - dev.dev_type.put("scaler") + dev.dev_type.put("scaler", timeout=10) - dev.write_dir.put(str(write_dir)) - dev.file_name.put(f"test_{uuid.uuid4().hex[:8]}.h5") + dev.write_dir.put(str(write_dir), timeout=10) + dev.file_name.put(f"test_{uuid.uuid4().hex[:8]}.h5", timeout=10) dev.set("stage").wait(timeout=10) dev.set("acquire").wait(timeout=10) dev.set("unstage").wait(timeout=10) - full_file_path = dev.full_file_path.get() + full_file_path = dev.full_file_path.get(timeout=10) assert Path(full_file_path).is_file(), f"HDF5 file not found: {full_file_path}" with h5py.File(full_file_path, "r") as f: @@ -63,7 +63,7 @@ def test_zebra_default_map_scaler_dev_type(zebra_caproto_ioc, zebra_ophyd_device ) # Reset dev_type back to default. - dev.dev_type.put("zebra") + dev.dev_type.put("zebra", timeout=10) @pytest.mark.cloud_friendly @@ -79,13 +79,13 @@ def test_zebra_custom_dataset_map( write_dir.mkdir(parents=True, exist_ok=True) dev = zebra_ophyd_device_custom_map - dev.write_dir.put(str(write_dir)) - dev.file_name.put(f"test_{uuid.uuid4().hex[:8]}.h5") + dev.write_dir.put(str(write_dir), timeout=10) + dev.file_name.put(f"test_{uuid.uuid4().hex[:8]}.h5", timeout=10) dev.set("stage").wait(timeout=10) dev.set("acquire").wait(timeout=10) dev.set("unstage").wait(timeout=10) - full_file_path = dev.full_file_path.get() + full_file_path = dev.full_file_path.get(timeout=10) assert Path(full_file_path).is_file(), f"HDF5 file not found: {full_file_path}" with h5py.File(full_file_path, "r") as f: From 7787ef862e5dacc312586360f187f437c946713b Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Tue, 12 May 2026 12:00:21 -0400 Subject: [PATCH 09/12] Fix EPICS_CA regression: keep auto-discovery, only add explicit broadcast Setting EPICS_CA_AUTO_ADDR_LIST=no broke the pre-existing base tests by disabling pyepics auto-discovery of local IOCs. Revert that; keep only EPICS_CA_ADDR_LIST so the computed broadcast is added ON TOP of the auto-discovered addresses (default EPICS_CA_AUTO_ADDR_LIST=yes behavior). Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --- tests/conftest.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/tests/conftest.py b/tests/conftest.py index 76ef7d7..c3a0024 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -32,9 +32,8 @@ def get_epics_env(): # Server-side: where the IOC sends beacons "EPICS_CAS_BEACON_ADDR_LIST": addr_list, "EPICS_CAS_AUTO_BEACON_ADDR_LIST": "no", - # Client-side: where ophyd/pyepics searches for IOCs + # Client-side: include the computed broadcast on top of auto-discovered addresses "EPICS_CA_ADDR_LIST": addr_list, - "EPICS_CA_AUTO_ADDR_LIST": "no", } From 9ef776ba9ac982e75f403153553f8e4672064bb8 Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Mon, 8 Jun 2026 17:19:31 -0400 Subject: [PATCH 10/12] CI: fix issues with tests --- pyproject.toml | 4 ++-- src/srx_caproto_iocs/base.py | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 8d57dbd..cddf302 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,5 +1,5 @@ [build-system] -requires = ["hatchling", "hatch-vcs", "setuptools>=61,<67"] +requires = ["hatchling", "hatch-vcs", "setuptools>=61"] build-backend = "hatchling.build" @@ -78,7 +78,7 @@ scripts.test = "pytest {args}" [tool.pytest.ini_options] minversion = "6.0" -addopts = ["-ra", "--showlocals", "--strict-markers", "--strict-config", "--timeout=120"] +addopts = ["-ra", "--showlocals", "--strict-markers", "--strict-config", "--timeout=20"] xfail_strict = true filterwarnings = [ "error", diff --git a/src/srx_caproto_iocs/base.py b/src/srx_caproto_iocs/base.py index 0325b4b..4525e6b 100644 --- a/src/srx_caproto_iocs/base.py +++ b/src/srx_caproto_iocs/base.py @@ -214,7 +214,7 @@ def saver(request_queue, response_queue): data = received["data"] frame_number = received["frame_number"] try: - save_hdf5_nd(fname=filename, data=data, mode="x", group_path="enc1") + save_hdf5_nd(fname=filename, data=data, mode="a", group_path="data/data") print( f"{now()}: saved {frame_number=} {data.shape} data into:\n {filename}" ) From 2dd8d03c21088a11792dd67e4d1adcf684f9db3c Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Mon, 8 Jun 2026 17:44:23 -0400 Subject: [PATCH 11/12] STY: fix linter issues --- .pre-commit-config.yaml | 2 +- src/srx_caproto_iocs/base.py | 4 +++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 0ce8bc1..111cf05 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -40,7 +40,7 @@ repos: args: [--prose-wrap=always] - repo: https://github.com/astral-sh/ruff-pre-commit - rev: "v0.15.12" + rev: "v0.15.16" hooks: - id: ruff args: ["--fix", "--show-fixes"] diff --git a/src/srx_caproto_iocs/base.py b/src/srx_caproto_iocs/base.py index 4525e6b..296dd23 100644 --- a/src/srx_caproto_iocs/base.py +++ b/src/srx_caproto_iocs/base.py @@ -214,7 +214,9 @@ def saver(request_queue, response_queue): data = received["data"] frame_number = received["frame_number"] try: - save_hdf5_nd(fname=filename, data=data, mode="a", group_path="data/data") + save_hdf5_nd( + fname=filename, data=data, mode="a", group_path="data/data" + ) print( f"{now()}: saved {frame_number=} {data.shape} data into:\n {filename}" ) From 8f666749794eee4c4ea9c9ca40d7016411dac4be Mon Sep 17 00:00:00 2001 From: Max Rakitin Date: Mon, 8 Jun 2026 21:40:48 -0400 Subject: [PATCH 12/12] FIX: ignore upstream opentelemetry DeprecationWarning in pytest The ophyd package imports opentelemetry, which uses the deprecated importlib.metadata dict interface (SelectableGroups), causing a DeprecationWarning that is promoted to an error by our filterwarnings=error pytest configuration. Add a specific ignore filter for this upstream warning to unblock CI for py310 and py311. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --- pyproject.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/pyproject.toml b/pyproject.toml index cddf302..c023f6e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -82,6 +82,7 @@ addopts = ["-ra", "--showlocals", "--strict-markers", "--strict-config", "--time xfail_strict = true filterwarnings = [ "error", + "ignore:SelectableGroups dict interface is deprecated:DeprecationWarning", ] log_cli_level = "INFO" testpaths = [