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ProteinMPNN NIM - #43

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ohadmo merged 5 commits into
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omosafi/proteinmpnn-nim
Sep 30, 2026
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ProteinMPNN NIM#43
ohadmo merged 5 commits into
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omosafi/proteinmpnn-nim

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@ohadmo ohadmo commented Sep 30, 2026

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ProteinMPNN NIM
cac3adf 
Signed-off-by: Ohad Mosafi <omosafi@nvidia.com>
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ohadmo commented Sep 30, 2026

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@greptileai

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ohadmo commented Sep 30, 2026

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/nvskills-ci

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greptile-apps Bot commented Sep 30, 2026 •
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RetriggerConfidence Score: 5/5

[Medium risk] Updates protein design skill documentation and evaluation setup.

The PR appears safe to merge; no actionable new issue or outstanding previous finding was established.

Summary

The PR adds an executable ProteinMPNN design client, result validation and artifact handling, hosted evaluation configuration, and corresponding distributed skill content. The latest changes add publication metadata, a benchmark report, and a signature bundle.

  • The source and distributed skill copies provide the same design workflow.
  • The benchmark describes the single active hosted evaluation.

Diagram

%%{init: {'theme': 'neutral'}}%%
flowchart LR
  P[PDB and design options] --> M{Selected mode}
  M -->|Hosted| H[NVIDIA API]
  M -->|Local| L[Configured NIM]
  H --> V[Validate FASTA and align scores]
  L --> V
  V --> A[Save response, FASTA and summary]
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Reviews (6) · Last reviewed commit: "Attach NVSkills validation signatures"

@ohadmo

ohadmo commented Sep 30, 2026

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Fix ProteinMPNN artifact saving and sequence-score reporting
543a22c 
Signed-off-by: Ohad Mosafi <omosafi@nvidia.com>
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ohadmo force-pushed the omosafi/proteinmpnn-nim branch from ef26f03 to 543a22c Compare September 30, 2026 19:27
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ohadmo commented Sep 30, 2026

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Declare ProteinMPNN permissions and document hosted data uploads
bde73ee 
Signed-off-by: Ohad Mosafi <omosafi@nvidia.com>
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ohadmo commented Sep 30, 2026

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Fix ProteinMPNN SkillSpector false positives in evaluation text
32401c6 
Signed-off-by: Ohad Mosafi <omosafi@nvidia.com>
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ohadmo commented Sep 30, 2026

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Attach NVSkills validation signatures
c5a313d 
Signed-off-by: nvskills-svc-account <svc-nvskills-signing@nvidia.com>
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ohadmo commented Sep 30, 2026

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ohadmo merged commit 16a373c into main Sep 30, 2026
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@ohadmo @svc-nvskills-signing