STmut/NAMESPACE at master · ShainLab/STmut · GitHub

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# Generated by roxygen2: do not edit by hand

export(.accStartCNR_CNS)
export(.accumStartPos)
export(CNVpermut)
export(CtArmGenes)
export(SNPmajorAlleleCt)
export(bulkCNVs)
export(bulkLOHplot)
export(caseCNVscore)
export(cdt_filt_sort)
export(cnvPlot1)
export(cnvPlot2)
export(cnvPlot3)
export(cnvs)
export(cnvsorted)
export(fdrTumor)
export(groupSpots)
export(lohMajorAlleleCt)
export(lohMpileupInput)
export(newSptBC)
export(nonZeRdCts)
export(permutScore)
export(proposTumLoup)
export(quintilePlot)
export(readsGrouped)
export(spaPointMutation)
export(splitSpot)
export(spotSummary)
export(spotsGrouped)
export(sptBClstRds)
export(sptMutCt)
export(wtArmMedianOne)
import(dplyr)
import(ggplot2)
import(heatmap.2x)
importFrom(RColorBrewer,brewer.pal)
importFrom(dendextend,cutree)
importFrom(dplyr,"%>%")
importFrom(dplyr,filter)
importFrom(futile.logger,flog.error)
importFrom(futile.logger,flog.info)
importFrom(futile.logger,flog.warn)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,hist)
importFrom(matrixStats,weightedMedian)
importFrom(raster,pointDistance)
importFrom(stats,as.dendrogram)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stringi,stri_pad_left)
importFrom(stringr,str_replace)
importFrom(stringr,str_split)
importFrom(stringr,str_split_fixed)
importFrom(utils,read.csv)
importFrom(utils,read.delim)
importFrom(utils,read.table)
importFrom(utils,write.csv)
importFrom(utils,write.table)