From 0f40445a45c8720dce7199b3921394a728140e82 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 1 Sep 2026 16:54:42 +0000
Subject: [PATCH] chore(deps): bump the routine group with 8 updates

Bumps the routine group with 8 updates:

| Package | From | To |
| --- | --- | --- |
| [pyside6](https://pyside.org) | `6.5.2` | `6.11.2` |
| [vtk](https://vtk.org) | `9.3.1` | `9.7.0` |
| [scipy](https://github.com/scipy/scipy) | `1.14.1` | `1.17.1` |
| [scikit-image](https://github.com/scikit-image/scikit-image) | `0.23.2` | `0.26.0` |
| [shapely](https://github.com/shapely/shapely) | `2.1.1` | `2.1.2` |
| [numcodecs](https://github.com/zarr-developers/numcodecs) | `0.15.0` | `0.16.5` |
| [lxml](https://github.com/lxml/lxml) | `6.1.0` | `6.1.2` |
| [gitpython](https://github.com/gitpython-developers/GitPython) | `3.1.59` | `3.1.61` |


Updates `pyside6` from 6.5.2 to 6.11.2

Updates `vtk` from 9.3.1 to 9.7.0

Updates `scipy` from 1.14.1 to 1.17.1
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](https://github.com/scipy/scipy/compare/v1.14.1...v1.17.1)

Updates `scikit-image` from 0.23.2 to 0.26.0
- [Release notes](https://github.com/scikit-image/scikit-image/releases)
- [Changelog](https://github.com/scikit-image/scikit-image/blob/main/RELEASE.txt)
- [Commits](https://github.com/scikit-image/scikit-image/compare/v0.23.2...v0.26.0)

Updates `shapely` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/shapely/shapely/releases)
- [Changelog](https://github.com/shapely/shapely/blob/main/CHANGES.txt)
- [Commits](https://github.com/shapely/shapely/compare/2.1.1...2.1.2)

Updates `numcodecs` from 0.15.0 to 0.16.5
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.md)
- [Commits](https://github.com/zarr-developers/numcodecs/compare/v0.15.0...v0.16.5)

Updates `lxml` from 6.1.0 to 6.1.2
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](https://github.com/lxml/lxml/compare/lxml-6.1.0...lxml-6.1.2)

Updates `gitpython` from 3.1.59 to 3.1.61
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.59...3.1.61)

---
updated-dependencies:
- dependency-name: pyside6
  dependency-version: 6.11.2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: routine
- dependency-name: vtk
  dependency-version: 9.7.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: routine
- dependency-name: scipy
  dependency-version: 1.17.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: routine
- dependency-name: scikit-image
  dependency-version: 0.26.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: routine
- dependency-name: shapely
  dependency-version: 2.1.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: routine
- dependency-name: numcodecs
  dependency-version: 0.16.5
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: routine
- dependency-name: lxml
  dependency-version: 6.1.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: routine
- dependency-name: gitpython
  dependency-version: 3.1.61
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: routine
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 pyproject.toml   | 16 ++++++++--------
 requirements.txt | 16 ++++++++--------
 2 files changed, 16 insertions(+), 16 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 3c0c80f14..d60db2006 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -23,22 +23,22 @@ authors = [
 #     by packaging/rthook_ssl.py at launch.
 #   * packaging: used for version parsing in modules/constants/repo_info.py.
 dependencies = [
-    "PySide6==6.5.2",
-    "vtk==9.3.1",
+    "PySide6==6.11.2",
+    "vtk==9.7.0",
     "vedo==2023.4.7",
     "opencv-python-headless==4.8.1.78",
     "numpy==1.24.1",
-    "scipy==1.14.1",
-    "scikit-image==0.23.2",
-    "shapely==2.1.1",
+    "scipy==1.17.1",
+    "scikit-image==0.26.0",
+    "shapely==2.1.2",
     "trimesh==3.18.1",
     "zarr==2.18.2",
-    "numcodecs==0.15.0",
+    "numcodecs==0.16.5",
     "cloud-volume==11.0.0",
-    "lxml==6.1.0",
+    "lxml==6.1.2",
     "tifffile==2024.9.20",
     "qdarkstyle==3.2.3",
-    "gitpython==3.1.59",
+    "gitpython==3.1.61",
     "certifi",
     "packaging",
 ]
diff --git a/requirements.txt b/requirements.txt
index 43183c889..131788e6d 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,16 +1,16 @@
-PySide6==6.5.2
+PySide6==6.11.2
 cloud-volume==11.0.0
-gitpython==3.1.59
-lxml==6.1.0
-numcodecs==0.15.0
+gitpython==3.1.61
+lxml==6.1.2
+numcodecs==0.16.5
 numpy==1.24.1
 opencv-python==4.8.1.78
 qdarkstyle==3.2.3
-scikit-image==0.23.2
-scipy==1.14.1
-shapely==2.1.1
+scikit-image==0.26.0
+scipy==1.17.1
+shapely==2.1.2
 tifffile==2024.9.20
 trimesh==3.18.1
 vedo==2023.4.7
-vtk==9.3.1
+vtk==9.7.0
 zarr==2.18.2