From f308b7c9f3d43736cc28c7cccd5c2c65e2344f91 Mon Sep 17 00:00:00 2001 From: Thibault Derousseaux <6574550+tibdex@users.noreply.github.com> Date: Mon, 27 Jul 2026 16:17:11 -0400 Subject: [PATCH 1/2] Upgrade to Atoti Python SDK 6.2.0 --- .github/workflows/deploy.yml | 10 +- .github/workflows/test.yml | 6 +- CONTRIBUTING.md | 2 +- Dockerfile | 2 +- README.md | 20 +- app/load_tables.py | 20 +- app/start_app.py | 8 +- app/start_session.py | 4 +- app/util/read_json.py | 4 +- app/util/reverse_geocode.py | 6 +- compose.yaml | 4 +- pyproject.toml | 15 +- skeleton/generate.py | 13 +- task-definition.json | 2 +- uv.lock | 591 +++++++++++++++++------------------ 15 files changed, 338 insertions(+), 369 deletions(-) diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml index bcce24d..2200134 100644 --- a/.github/workflows/deploy.yml +++ b/.github/workflows/deploy.yml @@ -15,12 +15,12 @@ jobs: name: Deploy to AWS environment: deploy-to-aws steps: - - uses: actions/checkout@v6.0.2 - - uses: aws-actions/configure-aws-credentials@v6.1.3 + - uses: actions/checkout@v7.0.1 + - uses: aws-actions/configure-aws-credentials@v6.2.3 with: aws-region: ${{ vars.AWS_REGION }} role-to-assume: arn:aws:iam::${{ secrets.AWS_ACCOUNT_ID }}:role/${{ vars.AWS_DEPLOYMENT_ROLE }} - - uses: aws-actions/amazon-ecr-login@v2.1.5 + - uses: aws-actions/amazon-ecr-login@v2.1.6 id: log-into-ecr - name: Build, tag, and push Docker image to Amazon ECR id: build-tag-and-push-docker-image @@ -37,13 +37,13 @@ jobs: -e 's/AWS_EXECUTION_ROLE_PLACEHOLDER/${{ vars.AWS_EXECUTION_ROLE }}/g' -e 's/AWS_REGION_PLACEHOLDER/${{ vars.AWS_REGION }}/g' task-definition.json - - uses: aws-actions/amazon-ecs-render-task-definition@v1.8.5 + - uses: aws-actions/amazon-ecs-render-task-definition@v1.9.0 id: render-task-definition with: container-name: atoti-session image: ${{ steps.build-tag-and-push-docker-image.outputs.tag }} task-definition: task-definition.json - - uses: aws-actions/amazon-ecs-deploy-task-definition@v2.6.2 + - uses: aws-actions/amazon-ecs-deploy-task-definition@v2.6.3 with: cluster: atoti-project-template service: atoti-project-template diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index e987f9e..281d379 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -8,12 +8,12 @@ jobs: name: Test runs-on: ubuntu-latest steps: - - uses: actions/checkout@v6.0.2 - - uses: astral-sh/setup-uv@v8.1.0 + - uses: actions/checkout@v7.0.1 + - uses: astral-sh/setup-uv@v9.0.0 with: enable-cache: true # Keep in sync with pyproject.toml's `tool.uv.required-version`. - version: "0.11.17" + version: "0.11.32" # Keep in sync with pyproject.toml's `project.requires-python`. - run: uv python install 3.14 - run: uv sync --locked diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 0ba17d7..64770bf 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -4,4 +4,4 @@ This project is not intended to become a showcase of all Atoti's features. It should have just enough structure to show how to start a project on sound and modular foundations, not more. -The right place to teach everything Atoti can do is https://docs.atoti.io. +The right place to teach everything Atoti can do is https://docs.activeviam.com/engine/python-sdk/6.2/index. diff --git a/Dockerfile b/Dockerfile index 1f939df..d6717e8 100644 --- a/Dockerfile +++ b/Dockerfile @@ -4,7 +4,7 @@ # Keep Python version in sync with: # - pyproject.toml's `project.requires-python`. # - the main stage below. -FROM ghcr.io/astral-sh/uv:0.11.17-python3.14-trixie-slim AS builder +FROM ghcr.io/astral-sh/uv:0.11.32-python3.14-trixie-slim AS builder ENV UV_COMPILE_BYTECODE=1 UV_LINK_MODE=copy diff --git a/README.md b/README.md index 8dd80e8..feac979 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ # Atoti Project Template -This template can be used to start Atoti projects where the goal is to [go into production rather than prototyping in a notebook](https://docs.atoti.io/latest/deployment/going_from_a_notebook_to_an_app.html). +This template can be used to start Atoti projects where the goal is to [go into production rather than prototyping in a notebook](https://docs.activeviam.com/engine/python-sdk/6.2/getting_started/deployment/going_from_a_notebook_to_an_app). On top of the `atoti` package, it comes with: @@ -25,17 +25,19 @@ On top of the `atoti` package, it comes with: ### Commands -To start the app: +Start the app: -```bash -uv run python -m app -``` +- with Docker and [Grafana OpenTelemetry LGTM](https://grafana.com/docs/opentelemetry/docker-lgtm): -To start the app in Docker with [Grafana OpenTelemetry LGTM](https://grafana.com/docs/opentelemetry/docker-lgtm): + ```bash + docker compose up --build + ``` + +- without them: -```bash -docker compose up --build -``` + ```bash + uv run python -m app + ``` Other useful commands can be found in [`test.yml`](.github/workflows/test.yml). diff --git a/app/load_tables.py b/app/load_tables.py index 040e1c1..2ca09b2 100644 --- a/app/load_tables.py +++ b/app/load_tables.py @@ -1,10 +1,10 @@ -from asyncio import gather +from asyncio import gather, to_thread from collections.abc import Iterable, Mapping from pathlib import Path from typing import Any, cast import atoti as tt -import httpx +import httpx2 import pandas as pd from pydantic import DirectoryPath, FilePath, HttpUrl @@ -18,7 +18,7 @@ @span async def read_station_information( *, - http_client: httpx.AsyncClient, + http_client: httpx2.AsyncClient, reverse_geocoding_path: HttpUrl | Path, velib_data_base_path: HttpUrl | Path, ) -> pd.DataFrame: @@ -77,7 +77,7 @@ async def read_station_status( velib_data_base_path: HttpUrl | Path, /, *, - http_client: httpx.AsyncClient, + http_client: httpx2.AsyncClient, ) -> pd.DataFrame: skeleton = Skeleton.tables.STATION_STATUS @@ -112,7 +112,7 @@ async def load_tables( /, *, config: Config, - http_client: httpx.AsyncClient, + http_client: httpx2.AsyncClient, ) -> None: if config.data_refresh_period is None: reverse_geocoding_path: HttpUrl | FilePath = ( @@ -144,10 +144,12 @@ async def load_tables( session.tables.data_transaction(), ): await gather( - session.tables[Skeleton.tables.STATION_INFORMATION.name].load_async( - station_information_df + to_thread( + session.tables[Skeleton.tables.STATION_INFORMATION.name].load, + station_information_df, ), - session.tables[Skeleton.tables.STATION_STATUS.name].load_async( - station_status_df + to_thread( + session.tables[Skeleton.tables.STATION_STATUS.name].load, + station_status_df, ), ) diff --git a/app/start_app.py b/app/start_app.py index 160aae9..64062a5 100644 --- a/app/start_app.py +++ b/app/start_app.py @@ -2,8 +2,8 @@ from contextlib import asynccontextmanager, nullcontext import atoti as tt -import httpx -from opentelemetry.instrumentation.httpx import AsyncOpenTelemetryTransport +import httpx2 +from opentelemetry.instrumentation.httpx import AsyncOpenTelemetryTransportHttpx2 from .config import Config from .load_tables import load_tables @@ -13,9 +13,9 @@ @asynccontextmanager async def start_app(*, config: Config) -> AsyncGenerator[tt.Session]: - httpx_transport = AsyncOpenTelemetryTransport(httpx.AsyncHTTPTransport()) + http_transport = AsyncOpenTelemetryTransportHttpx2(httpx2.AsyncHTTPTransport()) async with ( - httpx.AsyncClient(transport=httpx_transport) as http_client, + httpx2.AsyncClient(transport=http_transport) as http_client, start_session(config=config, http_client=http_client) as session, run_periodically( lambda: load_tables(session, config=config, http_client=http_client), diff --git a/app/start_session.py b/app/start_session.py index ce710e1..d506d7c 100644 --- a/app/start_session.py +++ b/app/start_session.py @@ -4,7 +4,7 @@ from contextlib import asynccontextmanager import atoti as tt -import httpx +import httpx2 from .config import Config from .create_and_join_tables import create_and_join_tables @@ -23,7 +23,7 @@ def _create_data_model(session: tt.Session, /) -> None: async def start_session( *, config: Config, - http_client: httpx.AsyncClient, + http_client: httpx2.AsyncClient, ) -> AsyncGenerator[tt.Session]: """Start the session, declare the data model and load the initial data.""" session_config = tt.SessionConfig( diff --git a/app/util/read_json.py b/app/util/read_json.py index 854173a..1946233 100644 --- a/app/util/read_json.py +++ b/app/util/read_json.py @@ -3,7 +3,7 @@ from pathlib import Path import anyio -import httpx +import httpx2 from pydantic import HttpUrl @@ -12,7 +12,7 @@ async def read_json( file_path: Path, /, *, - http_client: httpx.AsyncClient, + http_client: httpx2.AsyncClient, ) -> object: if isinstance(base_path, Path): json_bytes = await anyio.Path(base_path / file_path).read_bytes() diff --git a/app/util/reverse_geocode.py b/app/util/reverse_geocode.py index a1a014d..7192868 100644 --- a/app/util/reverse_geocode.py +++ b/app/util/reverse_geocode.py @@ -5,7 +5,7 @@ from pathlib import Path from typing import IO, Concatenate -import httpx +import httpx2 import pandas as pd from pydantic import HttpUrl @@ -62,7 +62,7 @@ async def _reverse_geocode( coordinates: AbstractSet[_Coordinates], /, *, - http_client: httpx.AsyncClient, + http_client: httpx2.AsyncClient, reverse_geocoding_path: HttpUrl | Path, ) -> _ReverseGeocodedCoordinates: if not coordinates: @@ -101,7 +101,7 @@ async def reverse_geocode( coordinates: Iterable[_Coordinates], /, *, - http_client: httpx.AsyncClient, + http_client: httpx2.AsyncClient, reverse_geocoding_path: HttpUrl | Path, ) -> pd.DataFrame: data = await _reverse_geocode( diff --git a/compose.yaml b/compose.yaml index c9b7ebb..4d94433 100644 --- a/compose.yaml +++ b/compose.yaml @@ -9,12 +9,12 @@ services: OTEL_EXPORTER_OTLP_ENDPOINT: http://grafana-otel-lgtm:4318 # HTTP healthcheck: start_period: 30s - test: ["CMD", "python", "-c", "import httpx; httpx.get('http://localhost/actuator/health/readiness').raise_for_status()"] + test: ["CMD", "python", "-c", "import httpx2; httpx2.get('http://localhost/actuator/health/readiness').raise_for_status()"] ports: - "127.0.0.1::80" grafana-otel-lgtm: - image: grafana/otel-lgtm:0.27.0 + image: grafana/otel-lgtm:0.29.2 ports: - "127.0.0.1::3000" # UI healthcheck: diff --git a/pyproject.toml b/pyproject.toml index 6b41361..5ece903 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,13 +1,5 @@ [dependency-groups] -dev = [ - "anyio", - "docker", - # Same bounds as `pandas` in `project.dependencies`. - "pandas-stubs>=2.2.3,<3.0.0.rc0", - "pytest", - "ruff", - "ty", -] +dev = ["anyio", "docker", "pandas-stubs", "pytest", "ruff", "ty"] [project] name = "app" @@ -18,7 +10,7 @@ version = "0.1.0" requires-python = ">=3.14" dependencies = [ "atoti[observability]", - "httpx", + "httpx2", "opentelemetry-exporter-otlp-proto-http", "opentelemetry-instrumentation-httpx", "opentelemetry-sdk", @@ -39,6 +31,7 @@ docstring-code-format = true [tool.ruff.lint] ignore = [ "COM812", # Covered by the formatter. + "CPY001", "D100", "D101", "D102", @@ -78,4 +71,4 @@ error-on-warning = true # Keep in sync with: # - .github/workflows/test.yml # - Dockerfile`'s `builder`. -required-version = ">=0.11.17" +required-version = ">=0.11.32" diff --git a/skeleton/generate.py b/skeleton/generate.py index d85a922..1606507 100644 --- a/skeleton/generate.py +++ b/skeleton/generate.py @@ -20,6 +20,11 @@ def _identifier(name: str, /) -> str: return re.sub(r"\W|^(?=\d)", "_", name) +def _str(value: object, /) -> str: + assert isinstance(value, str) + return value + + def _indent(code: str, /) -> str: return f"{' ' * 4}{code}" @@ -79,12 +84,12 @@ def _generate_class_name_and_lines[T]( case typed_dict if is_typeddict(typed_dict): assert isinstance(skeleton, Mapping) class_name_and_lines_from_attribute_name = { - attribute_name: _generate_class_name_and_lines( - skeleton[attribute_name], - annotation, + _str(attribute_name): _generate_class_name_and_lines( + attribute_value, + typed_dict.__annotations__[_str(attribute_name)], path=path, ) - for attribute_name, annotation in typed_dict.__annotations__.items() + for attribute_name, attribute_value in skeleton.items() } case _: raise TypeError(f"Unsupported skeleton type: {skeleton_type}.") diff --git a/task-definition.json b/task-definition.json index dedaea1..34a14df 100644 --- a/task-definition.json +++ b/task-definition.json @@ -30,7 +30,7 @@ "CMD", "python", "-c", - "import httpx; httpx.get('http://localhost/actuator/health/readiness').raise_for_status()" + "import httpx2; httpx2.get('http://localhost/actuator/health/readiness').raise_for_status()" ], "startPeriod": 30 } diff --git a/uv.lock b/uv.lock index c756fd2..5a450f6 100644 --- a/uv.lock +++ b/uv.lock @@ -1,26 +1,31 @@ version = 1 revision = 3 requires-python = ">=3.14" +resolution-markers = [ + "sys_platform == 'win32'", + "sys_platform == 'emscripten'", + "sys_platform != 'emscripten' and sys_platform != 'win32'", +] [[package]] name = "annotated-types" -version = "0.7.0" +version = "0.8.0" source = { registry = "https://pypi.org/simple" } -sdist = { url = "https://files.pythonhosted.org/packages/ee/67/531ea369ba64dcff5ec9c3402f9f51bf748cec26dde048a2f973a4eea7f5/annotated_types-0.7.0.tar.gz", hash = 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"https://files.pythonhosted.org/packages/6e/d2/6317eb6d4554855bbf12d61857774af34747bf88a42c19bf306de67e2fa3/wrapt-2.2.2-py3-none-any.whl", hash = "sha256:5bad217350f19ce99ca5b5e71d406765ea86fe541628426772b657375ee1c048", size = 61460, upload-time = "2026-06-20T23:49:42.966Z" }, ] From dff1a7500f360c86a7d2b53290fd9810e3a2c670 Mon Sep 17 00:00:00 2001 From: Thibault Derousseaux <6574550+tibdex@users.noreply.github.com> Date: Mon, 27 Jul 2026 16:35:42 -0400 Subject: [PATCH 2/2] Simplify --- tests/conftest.py | 9 ---- tests/docker/_docker_container.py | 27 ---------- tests/docker/_run_command.py | 9 ---- tests/docker/_timeout.py | 18 ------- tests/docker/conftest.py | 89 ++++++++++++++----------------- tests/docker/test_docker.py | 4 -- tests/test_session.py | 6 --- 7 files changed, 41 insertions(+), 121 deletions(-) delete mode 100644 tests/docker/_docker_container.py delete mode 100644 tests/docker/_run_command.py delete mode 100644 tests/docker/_timeout.py diff --git a/tests/conftest.py b/tests/conftest.py index b7e0e45..e5f6173 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,19 +1,10 @@ from collections.abc import AsyncGenerator -from pathlib import Path import atoti as tt import pytest from app import Config, start_app -_TESTS_DIRECTORY = Path(__file__).parent -_PROJECT_DIRECTORY = _TESTS_DIRECTORY.parent - - -@pytest.fixture(name="project_name", scope="session") -def project_name_fixture() -> str: - return _PROJECT_DIRECTORY.name - @pytest.fixture(name="config", scope="session") def config_fixture() -> Config: diff --git a/tests/docker/_docker_container.py b/tests/docker/_docker_container.py deleted file mode 100644 index a2a9bd4..0000000 --- a/tests/docker/_docker_container.py +++ /dev/null @@ -1,27 +0,0 @@ -from collections.abc import Generator, Mapping -from contextlib import contextmanager -from uuid import uuid4 - -import docker -from docker.models.containers import Container - - -@contextmanager -def docker_container( - image_name: str, - /, - *, - client: docker.DockerClient, - container_name: str | None = None, - env: Mapping[str, str] | None = None, -) -> Generator[Container]: - container = client.containers.run( - image_name, - detach=True, - environment=env, - name=container_name or str(uuid4()), - publish_all_ports=True, - ) - yield container - container.stop() - container.remove() diff --git a/tests/docker/_run_command.py b/tests/docker/_run_command.py deleted file mode 100644 index 5297ad4..0000000 --- a/tests/docker/_run_command.py +++ /dev/null @@ -1,9 +0,0 @@ -from collections.abc import Mapping, Sequence -from subprocess import STDOUT, CalledProcessError, check_output - - -def run_command(args: Sequence[str], /, *, env: Mapping[str, str] | None = None) -> str: - try: - return check_output(args, env=env, stderr=STDOUT, text=True) # noqa: S603 - except CalledProcessError as error: - raise RuntimeError(f"Command `{error.cmd}` failed:\n{error.output}") from error diff --git a/tests/docker/_timeout.py b/tests/docker/_timeout.py deleted file mode 100644 index 711811d..0000000 --- a/tests/docker/_timeout.py +++ /dev/null @@ -1,18 +0,0 @@ -from dataclasses import dataclass, field -from datetime import timedelta -from functools import cached_property -from time import monotonic - - -@dataclass(frozen=True) -class Timeout: - duration: timedelta - started_at: float = field(default_factory=monotonic, init=False) - - @property - def timed_out(self) -> bool: - return monotonic() > self.started_at + self._duration_in_seconds - - @cached_property - def _duration_in_seconds(self) -> float: - return self.duration.total_seconds() diff --git a/tests/docker/conftest.py b/tests/docker/conftest.py index ffa0aac..3c9ab57 100644 --- a/tests/docker/conftest.py +++ b/tests/docker/conftest.py @@ -1,25 +1,13 @@ from collections.abc import Generator from contextlib import closing from datetime import timedelta -from pathlib import Path -from shutil import which -from uuid import uuid4 +from subprocess import STDOUT, CalledProcessError, check_output +from time import monotonic, sleep import atoti as tt import docker import pytest -from ._docker_container import docker_container -from ._run_command import run_command -from ._timeout import Timeout - - -@pytest.fixture(name="docker_bin", scope="session") -def docker_bin_fixture() -> Path: - docker_bin = which("docker") - assert docker_bin - return Path(docker_bin) - @pytest.fixture(name="docker_client", scope="session") def docker_client_fixture() -> Generator[docker.DockerClient]: @@ -27,52 +15,54 @@ def docker_client_fixture() -> Generator[docker.DockerClient]: yield client -@pytest.fixture(name="docker_image_name", scope="session") -def docker_image_name_fixture( - docker_bin: Path, docker_client: docker.DockerClient, project_name: str -) -> Generator[str]: - tag = f"{project_name}:{uuid4()}" - - # BuildKit is enabled by default for all users on Docker Desktop. - # See https://docs.docker.com/build/buildkit/#getting-started. - is_buildkit_already_enabled = ( - "docker desktop" in run_command([str(docker_bin), "version"]).lower() - ) - +@pytest.fixture(name="docker_image_id", scope="session") +def docker_image_id_fixture(docker_client: docker.DockerClient) -> Generator[str]: + # The `Dockerfile` uses `RUN --mount` which requires BuildKit. # BuildKit is not supported by Docker's Python SDK so `docker_client.images.build` cannot be used. # See https://github.com/docker/docker-py/issues/2230. - output = run_command( - [str(docker_bin), "build", "--tag", tag, "."], - env=None if is_buildkit_already_enabled else {"DOCKER_BUILDKIT": "1"}, - ) - assert f"naming to docker.io/library/{tag}" in output - yield tag - docker_client.images.remove(tag) + try: + # `--quiet` makes the built image ID the only output, removing the need to tag the image. + image_id = check_output( + [ # noqa: S607 + "docker", + "build", + "--quiet", + ".", + ], + stderr=STDOUT, + text=True, + ).strip() + except CalledProcessError as error: + raise RuntimeError(f"Docker build failed:\n{error.output}") from error + + try: + yield image_id + finally: + docker_client.images.remove(image_id) @pytest.fixture(name="session_inside_docker_container", scope="session") def session_inside_docker_container_fixture( - docker_client: docker.DockerClient, docker_image_name: str + docker_client: docker.DockerClient, docker_image_id: str ) -> Generator[tt.Session]: - timeout = Timeout(timedelta(minutes=1)) - - with docker_container( - docker_image_name, - client=docker_client, - env={ + container = docker_client.containers.run( + docker_image_id, + detach=True, + environment={ # Test external APIs. "DATA_REFRESH_PERIOD": "30" }, - ) as container: - while True: - logs = container.logs() - if b"Session listening on port" in logs: - break - if timeout.timed_out: - raise RuntimeError(f"Session start timed out:\n{logs}") + publish_all_ports=True, + ) + + try: + deadline = monotonic() + timedelta(minutes=1).total_seconds() + while b"Session listening on port" not in (logs := container.logs()): + if monotonic() > deadline: + raise RuntimeError(f"Session start timed out:\n{logs.decode()}") + sleep(0.1) container.reload() # Refresh `attrs` to get its `HostPort`. - assert container.attrs is not None host_port = int( next(iter(container.attrs["NetworkSettings"]["Ports"].values()))[0][ "HostPort" @@ -83,3 +73,6 @@ def session_inside_docker_container_fixture( tt.mapping_lookup(check=False), ): yield session + finally: + container.stop() + container.remove() diff --git a/tests/docker/test_docker.py b/tests/docker/test_docker.py index 270d6b2..b0ee938 100644 --- a/tests/docker/test_docker.py +++ b/tests/docker/test_docker.py @@ -1,5 +1,4 @@ import atoti as tt -import pandas as pd from app import Skeleton @@ -13,9 +12,6 @@ def test_session_inside_docker_container( cube = session_inside_docker_container.cubes[skeleton.name] m = cube.measures result = cube.query(m[skeleton.measures.CAPACITY.name]) - assert isinstance( # Remove once ty detects it on its own. - result, pd.DataFrame - ) total_capacity = result[skeleton.measures.CAPACITY.name][0] assert total_capacity > EXPECTED_TOTAL_CAPACITY, ( "The data fetched from the external API should lead to a greater capacity than the one of the local data since new stations have been created since the data was snapshotted." diff --git a/tests/test_session.py b/tests/test_session.py index 91c6f0b..9220487 100644 --- a/tests/test_session.py +++ b/tests/test_session.py @@ -11,9 +11,6 @@ async def test_total_capacity(session: tt.Session) -> None: cube = session.cubes[skeleton.name] m = cube.measures result = cube.query(m[skeleton.measures.CAPACITY.name]) - assert isinstance( # Remove once ty detects it on its own. - result, pd.DataFrame - ) expected_result = pd.DataFrame( { skeleton.measures.CAPACITY.name: pd.Series( @@ -34,9 +31,6 @@ async def test_departments(session: tt.Session) -> None: l[skeleton.dimensions.STATION_INFORMATION.LOCATION.DEPARTMENT.key], ], ) - assert isinstance( # Remove once ty detects it on its own. - result, pd.DataFrame - ) assert list(result.index) == [ "75, Paris, Île-de-France", "92, Hauts-de-Seine, Île-de-France",