chore(tests): bump HETA to 1.2.0, update SPOT_0/1 file sizes, remove special app

[ari-nz]

Summary

• Bumps HETA_APPLICATION_VERSION to 1.2.0 for both production and staging environments
• Adds the new SPOT_1 breast cancer slide (1603ba4c) to the external test bucket and updates SPOT_1_EXPECTED_RESULT_FILES with the correct 9-file sizes for HETA 1.2.0
• Updates SPOT_0_EXPECTED_RESULT_FILES with the correct 9-file sizes from a HETA 1.2.0 production run
• Removes the SPECIAL_APPLICATION constant and guards all tests that previously depended on it (staging environment does not have a special app)

Test plan

• Unit/integration tests pass without changes
• Long-running e2e tests (test_gui_run_download, test_cli_run_execute) verify the updated file sizes against a real HETA 1.2.0 run

[codecov]

❌ 3 Tests Failed:

Tests completed	Failed	Passed	Skipped
873	3	870	19

View the top 2 failed test(s) by shortest run time

tests.aignostics.application.cli_test::test_cli_application_dump_schemata

Stack Traces | 0.063s run time

runner = <typer.testing.CliRunner object at 0x7fc4f0a8a250>
tmp_path = PosixPath('.../pytest-18/popen-gw0/test_cli_application_dump_sche0')
record_property = <function record_property.<locals>.append_property at 0x7fc4f07bd430>

    @pytest.mark.e2e
    @pytest.mark.timeout(timeout=60)
    def test_cli_application_dump_schemata(runner: CliRunner, tmp_path: Path, record_property) -> None:
        """Check application dump schemata works as expected."""
        record_property("tested-item-id", "SPEC-APPLICATION-SERVICE")
        result = runner.invoke(
            cli,
            [
                "application",
                "dump-schemata",
                HETA_APPLICATION_ID,
                "--application-version",
                HETA_APPLICATION_VERSION,
                "--destination",
                str(tmp_path),
                "--zip",
            ],
        )
        assert result.exit_code == 0
>       assert "Zipped 11 files" in normalize_output(result.output)
E       AssertionError: assert 'Zipped 11 files' in 'Zipped 16 files to .../pytest-18/popen-gw0/test_cli_application_dump_sche0/he-tme_1.2.0_schemata.zip'
E        +  where 'Zipped 16 files to .../pytest-18/popen-gw0/test_cli_application_dump_sche0/he-tme_1.2.0_schemata.zip' = normalize_output('Zipped 16 files to .../pytest-18/popen-gw0/test_cli_application_dump_sche0/he-tme_1.2.0_schemata.zip\n')
E        +    where 'Zipped 16 files to .../pytest-18/popen-gw0/test_cli_application_dump_sche0/he-tme_1.2.0_schemata.zip\n' = <Result okay>.output

.../aignostics/application/cli_test.py:227: AssertionError

tests.aignostics.application.gui_test::test_gui_download_dataset_via_application_to_run_cancel_to_find_back

Stack Traces | 3.48s run time

user = <nicegui.testing.user.User object at 0x7fd68b5dca50>
runner = <typer.testing.CliRunner object at 0x7fd653d7b750>
silent_logging = None
record_property = <function record_property.<locals>.append_property at 0x7fd6586c92d0>

    @pytest.mark.e2e
    @pytest.mark.long_running
    @pytest.mark.flaky(retries=1, delay=5)
    @pytest.mark.timeout(timeout=60 * 10)
    @pytest.mark.sequential
    async def test_gui_download_dataset_via_application_to_run_cancel_to_find_back(  # noqa: PLR0915
        user: User, runner: CliRunner, silent_logging: None, record_property
    ) -> None:
        """Test that the user can download a dataset via the application page and cancel the run, then find it back."""
        record_property("tested-item-id", "TC-APPLICATION-GUI-04, SPEC-GUI-SERVICE")
        with tempfile.TemporaryDirectory() as tmpdir:
            tmp_path = Path(tmpdir)
    
            with patch(
                "aignostics.application._gui._page_application_describe.Path.home",
                return_value=tmp_path,
            ):
                # Download example wsi
                result = runner.invoke(
                    cli,
                    [
                        "dataset",
                        "aignostics",
                        "download",
                        SPOT_1_GS_URL,
                        str(tmp_path),
                    ],
                )
                assert result.exit_code == 0
                assert "Successfully downloaded" in normalize_output(result.stdout)
                assert SPOT_1_FILENAME in normalize_output(result.stdout)
                expected_file = Path(tmp_path) / SPOT_1_FILENAME
                assert expected_file.exists(), f"Expected file {expected_file} not found"
>               assert expected_file.stat().st_size == 14681750
E               AssertionError: assert 8942460 == 14681750
E                +  where 8942460 = os.stat_result(st_mode=33188, st_ino=9764232, st_dev=2049, st_nlink=1, st_uid=1001, st_gid=1001, st_size=8942460, st_atime=1778594889, st_mtime=1778594890, st_ctime=1778594890).st_size
E                +    where os.stat_result(st_mode=33188, st_ino=9764232, st_dev=2049, st_nlink=1, st_uid=1001, st_gid=1001, st_size=8942460, st_atime=1778594889, st_mtime=1778594890, st_ctime=1778594890) = stat()
E                +      where stat = PosixPath('.../tmp/tmpqtyumlws/1603ba4c-398a-49db-926b-c14d8f17dc83.tiff').stat

.../aignostics/application/gui_test.py:217: AssertionError

View the full list of 1 ❄️ flaky test(s)

tests.aignostics.dataset.cli_test::test_cli_aignostics_download_sample

Flake rate in main: 8.82% (Passed 31 times, Failed 3 times)

Stack Traces | 3.89s run time

runner = <typer.testing.CliRunner object at 0x7f8d96b6e690>
tmp_path = PosixPath('.../pytest-18/popen-gw3/test_cli_aignostics_download_s1')
record_property = <function record_property.<locals>.append_property at 0x7f8d988d03b0>

    @pytest.mark.e2e
    @pytest.mark.flaky(retries=1, delay=5)
    @pytest.mark.timeout(timeout=60 * 2)
    def test_cli_aignostics_download_sample(runner: CliRunner, tmp_path: Path, record_property) -> None:
        """Check download functionality with dry-run option."""
        record_property("tested-item-id", "TC-DATASET-CLI-01")
        result = runner.invoke(
            cli,
            [
                "dataset",
                "aignostics",
                "download",
                SPOT_1_GS_URL,
                str(tmp_path),
            ],
        )
        assert result.exit_code == 0
    
        assert "Successfully downloaded" in result.stdout
        assert SPOT_1_FILENAME in result.stdout
    
        expected_file = tmp_path / SPOT_1_FILENAME
        assert expected_file.exists(), f"Expected file {expected_file} not found"
>       assert expected_file.stat().st_size == 14681750
E       AssertionError: assert 8942460 == 14681750
E        +  where 8942460 = os.stat_result(st_mode=33188, st_ino=9451681, st_dev=2049, st_nlink=1, st_uid=1001, st_gid=1001, st_size=8942460, st_atime=1778594533, st_mtime=1778594534, st_ctime=1778594534).st_size
E        +    where os.stat_result(st_mode=33188, st_ino=9451681, st_dev=2049, st_nlink=1, st_uid=1001, st_gid=1001, st_size=8942460, st_atime=1778594533, st_mtime=1778594534, st_ctime=1778594534) = stat()
E        +      where stat = PosixPath('.../pytest-18/popen-gw3/test_cli_aignostics_download_s1/1603ba4c-398a-49db-926b-c14d8f17dc83.tiff').stat

.../aignostics/dataset/cli_test.py:152: AssertionError

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[sonarqubecloud]

Quality Gate failed

Failed conditions
11.5% Duplication on New Code (required ≤ 3%)

See analysis details on SonarQube Cloud