Error handling in mapping utilities is not user-friendly

[krassowski]

SBGNview/R/mapping.utilities.R

Lines 465 to 476 in bbaeea8

	if (!all(c(input.type) %in% colnames(id.mapping.table))) {
	message(input.type, " must be in column names of id.mapping.table!\n")
	message("Column names of id.mapping.table are:\n")
	cat(colnames(id.mapping.table), "\n\n\n\n")
	stop()
	}
	if (!all(c(output.type) %in% colnames(id.mapping.table))) {
	message(output.type, " must be in column names of id.mapping.table!\n")
	message("Column names of id.mapping.table are:\n")
	cat(colnames(id.mapping.table), "\n\n\n\n")
	stop()
	}

has bare stop(). Because of #4 I was using suppressMessages(SBGNview()) and getting no error messages. The error message could be pasted and moved into stop().

[raw937]

Are you still having this issue? Let me know?

This project is no longer under development here.
Please check the new fork here.
https://github.com/Kannapolis-Bioinformatics/SBGNview

If you have the same issues place in https://github.com/Kannapolis-Bioinformatics/SBGNview/issues.

many thanks,
Rick