diff --git a/.circleci/config.yml b/.circleci/config.yml
index a59ed99d..ec6d40e9 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -22,7 +22,7 @@ jobs:
sudo apt-get install -y r-base-core cmake
- run:
command: |
- sudo apt-get install -y libxml2-dev
+ sudo apt-get install -y libxml2-dev libuv1-dev
- run:
command: |
echo "options(Ncpus=4)" >> ~/.Rprofile
diff --git a/R/glmSLMADS.assign.R b/R/glmSLMADS.assign.R
index f7b5fff4..68fe6929 100644
--- a/R/glmSLMADS.assign.R
+++ b/R/glmSLMADS.assign.R
@@ -21,21 +21,21 @@ glmSLMADS.assign <- function(formula, family, offsetName, weightsName, dataName)
# Convert transmitable text for special link variance combinations back to full representation
if(family=="quasigamma.link_log")
{family<-"quasi(link=log,variance=mu^2)"}
-
+
if(family=="Gamma.link_log")
{family<-"Gamma(link=log)"}
-
+
# Correctly name offset, weights and data objects in function call
# (to allow glmPredict to work correctly later)
calltext <- paste0("mg<-glm(formula,family=",family,",offset=",
offsetName,",weights=",weightsName,",data=", dataName,",x=TRUE)")
-
+
eval(parse(text=calltext))
-
+
# update the call object to include the actual formula
mg$call$formula <- formula
-
- return(mg)
+
+ return(mg)
}
# ASSIGN FUNCTION
diff --git a/azure-pipelines.yml b/azure-pipelines.yml
index b79d39f0..da0d21aa 100644
--- a/azure-pipelines.yml
+++ b/azure-pipelines.yml
@@ -106,7 +106,7 @@ jobs:
sudo apt-get install -qq pkg-config -y
sudo apt-get install -qq libxml2-dev libcurl4-openssl-dev libssl-dev libgit2-dev libharfbuzz-dev libfribidi-dev libfontconfig1-dev -y
- sudo apt-get install -qq libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev -y
+ sudo apt-get install -qq libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libuv1-dev -y
sudo apt-get install -qq r-base -y
sudo R -e "install.packages('devtools', dependencies=TRUE)"
sudo R -e "install.packages('RANN', dependencies=TRUE)"
@@ -257,7 +257,6 @@ jobs:
echo 'branch:'$(branchName) >> $(datetime).txt
echo 'os:'$(lsb_release -ds) >> $(datetime).txt
echo 'R:'$(R --version | head -n 1) >> $(datetime).txt
- echo 'opal:'$(opal system --opal localhost:8080 --user administrator --password "datashield_test&" --version) >> $(datetime).txt
workingDirectory: $(Pipeline.Workspace)/logs
displayName: 'Write versions to file'
diff --git a/docs/authors.html b/docs/authors.html
index dc54dd5e..3526a873 100644
--- a/docs/authors.html
+++ b/docs/authors.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
@@ -106,20 +102,12 @@
Citation
Burton P, Wilson R, Butters O, Ryser-Welch P, Westerberg A, Abarrategui L, Villegas-Diaz R, Avraam D, Marcon Y, Bishop T, Gaye A, Escribà-Montagut X, Wheater S (????).
dsBase: 'DataSHIELD' Server Side Base Functions.
-<<<<<<< HEAD
R package version 6.4.0.9000.
-=======
-R package version 6.3.5.9000.
->>>>>>> origin/v6.3.5-dev
@Manual{,
title = {dsBase: 'DataSHIELD' Server Side Base Functions},
author = {Paul Burton and Rebecca Wilson and Olly Butters and Patricia Ryser-Welch and Alex Westerberg and Leire Abarrategui and Roberto Villegas-Diaz and Demetris Avraam and Yannick Marcon and Tom Bishop and Amadou Gaye and Xavier Escribà-Montagut and Stuart Wheater},
-<<<<<<< HEAD
note = {R package version 6.4.0.9000},
-=======
- note = {R package version 6.3.5.9000},
->>>>>>> origin/v6.3.5-dev
}
Gaye A, Marcon Y, Isaeva J, LaFlamme P, Turner A, Jones E, Minion J, Boyd A, Newby C, Nuotio M, Wilson R, Butters O, Murtagh B, Demir I, Doiron D, Giepmans L, Wallace S, Budin-Ljøsne I, Schmidt C, Boffetta P, Boniol M, Bota M, Carter K, deKlerk N, Dibben C, Francis R, Hiekkalinna T, Hveem K, Kvaløy K, Millar S, Perry I, Peters A, Phillips C, Popham F, Raab G, Reischl E, Sheehan N, Waldenberger M, Perola M, van den Heuvel E, Macleod J, Knoppers B, Stolk R, Fortier I, Harris J, Woffenbuttel B, Murtagh M, Ferretti V, Burton P (2014).
“DataSHIELD: taking the analysis to the data, not the data to the analysis.”
diff --git a/docs/index.html b/docs/index.html
index 41bcede1..1d86586f 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -33,11 +33,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index 6f09758f..9cfbee88 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -2,8 +2,4 @@ pandoc: 3.1.3
pkgdown: 2.2.0
pkgdown_sha: ~
articles: {}
-<<<<<<< HEAD
-last_built: 2025-11-28T12:54Z
-=======
-last_built: 2025-11-30T16:44Z
->>>>>>> origin/v6.3.5-dev
+last_built: 2026-02-20T10:54Z
diff --git a/docs/reference/BooleDS.html b/docs/reference/BooleDS.html
index d5f322aa..6c120d76 100644
--- a/docs/reference/BooleDS.html
+++ b/docs/reference/BooleDS.html
@@ -18,11 +18,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/absDS.html b/docs/reference/absDS.html
index fc172e34..9ffeb870 100644
--- a/docs/reference/absDS.html
+++ b/docs/reference/absDS.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/asCharacterDS.html b/docs/reference/asCharacterDS.html
index 40f94a04..24b7fe91 100644
--- a/docs/reference/asCharacterDS.html
+++ b/docs/reference/asCharacterDS.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/asDataMatrixDS.html b/docs/reference/asDataMatrixDS.html
index a3a54d0c..eae50c28 100644
--- a/docs/reference/asDataMatrixDS.html
+++ b/docs/reference/asDataMatrixDS.html
@@ -1,9 +1,6 @@
-<<<<<<< HEAD
-
asDataFrameDS a serverside assign function called by ds.asDataFrame — asDataMatrixDS • dsBaseasDataMatrixDS a serverside assign function called by ds.asDataMatrix — asDataMatrixDS • dsBase<
+head>asDataFrameDS a serverside assign function called by ds.asDataFrame — asDataMatrixDS • dsBasecheckPermissivePrivacyControlLevel — checkPermissivePrivacyControlLevel • dsBasecheckPermissivePrivacyControlLevel — checkPermissivePrivacyControlLevel • dsBase
@@ -21,15 +17,7 @@
dsBase
-<<<<<<< HEAD
-<<<<<<< HEAD
6.4.0-9000
-=======
- 6.3.4
->>>>>>> origin/v6.3.5-dev
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/classDS.html b/docs/reference/classDS.html
index 5a0fab58..55390ce4 100644
--- a/docs/reference/classDS.html
+++ b/docs/reference/classDS.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/colnamesDS.html b/docs/reference/colnamesDS.html
index d1e770d4..c43ba5cb 100644
--- a/docs/reference/colnamesDS.html
+++ b/docs/reference/colnamesDS.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/completeCasesDS.html b/docs/reference/completeCasesDS.html
index af9b8d44..a53e10fa 100644
--- a/docs/reference/completeCasesDS.html
+++ b/docs/reference/completeCasesDS.html
@@ -18,11 +18,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/corDS.html b/docs/reference/corDS.html
index b4fb7229..07cbf5e9 100644
--- a/docs/reference/corDS.html
+++ b/docs/reference/corDS.html
@@ -18,11 +18,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/corTestDS.html b/docs/reference/corTestDS.html
index 2ead0203..5b58cb0a 100644
--- a/docs/reference/corTestDS.html
+++ b/docs/reference/corTestDS.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/covDS.html b/docs/reference/covDS.html
index bfc552fb..f4901bf1 100644
--- a/docs/reference/covDS.html
+++ b/docs/reference/covDS.html
@@ -18,11 +18,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/dataFrameDS.html b/docs/reference/dataFrameDS.html
index 50ae4fac..eba9e1a6 100644
--- a/docs/reference/dataFrameDS.html
+++ b/docs/reference/dataFrameDS.html
@@ -19,11 +19,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/dataFrameFillDS.html b/docs/reference/dataFrameFillDS.html
index 3e6098c1..3f9e3a32 100644
--- a/docs/reference/dataFrameFillDS.html
+++ b/docs/reference/dataFrameFillDS.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/dataFrameSortDS.html b/docs/reference/dataFrameSortDS.html
index d4395261..01144cd3 100644
--- a/docs/reference/dataFrameSortDS.html
+++ b/docs/reference/dataFrameSortDS.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/dataFrameSubsetDS1.html b/docs/reference/dataFrameSubsetDS1.html
index 1210c05c..4585d60c 100644
--- a/docs/reference/dataFrameSubsetDS1.html
+++ b/docs/reference/dataFrameSubsetDS1.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/dataFrameSubsetDS2.html b/docs/reference/dataFrameSubsetDS2.html
index 5e41ee7e..929ae49c 100644
--- a/docs/reference/dataFrameSubsetDS2.html
+++ b/docs/reference/dataFrameSubsetDS2.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/densityGridDS.html b/docs/reference/densityGridDS.html
index 823b1bc2..6fba6784 100644
--- a/docs/reference/densityGridDS.html
+++ b/docs/reference/densityGridDS.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/dimDS.html b/docs/reference/dimDS.html
index 92e4c87f..b9b9f448 100644
--- a/docs/reference/dimDS.html
+++ b/docs/reference/dimDS.html
@@ -17,11 +17,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/dmtC2SDS.html b/docs/reference/dmtC2SDS.html
index 0a8f128d..787d6d90 100644
--- a/docs/reference/dmtC2SDS.html
+++ b/docs/reference/dmtC2SDS.html
@@ -18,11 +18,7 @@
dsBase
-<<<<<<< HEAD
6.4.0.9000
-=======
- 6.3.5.9000
->>>>>>> origin/v6.3.5-dev
diff --git a/docs/reference/dsBase-package.html b/docs/reference/dsBase-package.html
deleted file mode 100644
index 7270ec16..00000000
--- a/docs/reference/dsBase-package.html
+++ /dev/null
@@ -1,91 +0,0 @@
-
-dsBase: 'DataSHIELD' Server Side Base Functions — dsBase-package • dsBase
-
-
-
Base 'DataSHIELD' functions for the server side. 'DataSHIELD' is a software package which allows you to do non-disclosive federated analysis on sensitive data. 'DataSHIELD' analytic functions have been designed to only share non disclosive summary statistics, with built in automated output checking based on statistical disclosure control. With data sites setting the threshold values for the automated output checks. For more details, see 'citation("dsBase")'.