diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml
index ad42569..4419dfb 100644
--- a/.github/workflows/main.yaml
+++ b/.github/workflows/main.yaml
@@ -19,7 +19,7 @@ jobs:
runs-on: ubuntu-latest
strategy:
matrix:
- python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
+ python-version: ["3.12", "3.13", "3.14"]
fail-fast: false
steps:
@@ -30,7 +30,7 @@ jobs:
with:
persist-credentials: false
submodules: 'recursive' # grab submodules
-
+
# https://github.com/astral-sh/setup-uv
- name: Install uv
uses: astral-sh/setup-uv@v8.2.0
diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml
new file mode 100644
index 0000000..7b5fbd9
--- /dev/null
+++ b/.github/workflows/release.yaml
@@ -0,0 +1,82 @@
+name: Model Release
+
+on:
+ push:
+ tags:
+ - "v*"
+ release:
+ types: [published]
+ workflow_dispatch:
+ inputs:
+ tag:
+ description: "Tag to release (e.g. v1.2.3)"
+ required: true
+
+env:
+ FORCE_COLOR: "1"
+ RELEASE_TAG: ${{ github.ref_name || github.event.inputs.tag }}
+
+jobs:
+ release:
+ runs-on: ubuntu-latest
+ permissions:
+ contents: write # Required to create GitHub Releases and upload assets
+
+ steps:
+ - name: Checkout repository
+ uses: actions/checkout@v7.0.1
+ with:
+ fetch-depth: 0 # Required for uv-dynamic-versioning to read git tags
+ persist-credentials: false
+ submodules: 'recursive' # grab submodules
+
+ - name: Set up uv
+ uses: astral-sh/setup-uv@v9.0.0
+ with:
+ enable-cache: true
+
+ - name: Set up Python
+ uses: actions/setup-python@v7.0.0
+ with:
+ python-version: "3.10"
+
+ - name: Install just
+ run: uv tool install rust-just
+
+ # Install gen-sqla before uv sync so the hatch build hook can find it
+ # when building the editable install during `uv sync --no-install-project`.
+ - name: Install gen-sqla
+ run: uv tool install linkml
+
+ - name: Install dependencies
+ run: uv sync --dev --no-progress --no-install-project
+
+ - name: Install project
+ run: uv sync --dev --no-progress
+
+ - name: Generate all model artifacts
+ run: |
+ just site
+ # Runs gen-project, gen-doc, _gen_ftddd, _gen_sqla, _gen_harmony
+ # Produces: project/sqlalchemy/, project/harmony/, project/owl/, etc.
+ # hatch_build.py will skip re-generating the SQLAlchemy file since
+ # just site already created it (dest_file.exists() guard).
+
+ - name: Build wheel and sdist
+ run: uv build
+
+ - name: Zip full project artifacts
+ run: zip -r project-artifacts.zip project/
+
+ - name: Create GitHub Release
+ uses: softprops/action-gh-release@v3
+ with:
+ tag_name: ${{ env.RELEASE_TAG }}
+ name: "Release ${{ env.RELEASE_TAG }}"
+ generate_release_notes: true
+ update_release: true
+ files: |
+ dist/*.whl
+ dist/*.tar.gz
+ project-artifacts.zip
+ fail_on_unmatched_files: true
diff --git a/.gitmodules b/.gitmodules
index c4c43c2..e69de29 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -1,3 +0,0 @@
-[submodule "src/include_access_model/schema/common-access-model"]
- path = src/include_access_model/schema/common-access-model
- url = https://github.com/include-dcc/common-access-model
diff --git a/.linkml-linter.yaml b/.linkml-linter.yaml
new file mode 100644
index 0000000..1dcffad
--- /dev/null
+++ b/.linkml-linter.yaml
@@ -0,0 +1,3 @@
+rules:
+ permissible_values_format:
+ format: '^[a-zA-Z0-9_\-:]+$'
diff --git a/COLLABORATORS.md b/COLLABORATORS.md
new file mode 100644
index 0000000..369c165
--- /dev/null
+++ b/COLLABORATORS.md
@@ -0,0 +1,72 @@
+## Welcome to the INCLUDE Access Model 🚀
+
+This repository serves as a downstream model designed to specialize the
+[Common Access Model](https://github.com/include-dcc/common-access-model). A
+pinned version of this upstream model is captured in
+src/kf_access_model/schema/upstream-models/common_access_model*.yaml.
+
+The purpose of this model is to build out a program-specific extension (or
+profile) by importing the core elements and layering the INCLUDE unique data
+requirements on top.
+
+## Key Integration Guidelines
+
+- The upstream-models/common_access_model.yaml should never be updated. This
+ should be treated like any other machine generated file and left alone. If
+ changes must be made to the upstream model, they should be made directly to
+ that model, a release published and the local version updated using the
+ tooling proved.
+- Leverage Imports: At this time, the current model imports the
+ common_access_model.yaml directly within the main model definition.
+- Extend via Inheritance: Use the is_a or mixins keys to create program-specific
+ subclasses that inherit core slots while allowing you to add local attributes.
+- Refine via Slot Usage: If you need to restrict or change the behavior of an
+ inherited core slot just for your program's classes, use the slot_usage
+ feature.
+
+## Updating to the newest common_access_model
+
+Upon new releases in the common_access_model, a flattened version of the model
+is generated and made available immediately. Tooling is provided to
+automatically pull the newest version down and link it correctly to work without
+making any changes to the local model's yaml.
+
+```bash
+just update-cam
+```
+
+This recipe will download the newest version to the directory,
+src/kf_access_model/schema/upstream-models and create a symbolic link from the
+common name, common_access_model.yaml. As a result, once that one entry has been
+made to the local model, subsequent updates should work without further updates
+to the model itself.
+
+```model-yaml
+imports:
+ - upstream-models/common_access_model
+```
+
+The current version of the common_access_model and the symbolic link should be
+properly managed by git so that all collaborators will be working on the same
+core model.
+
+> [WARNING] This will bring the upstream model to the most current version and,
+> as such, should only be performed according to planned upgrades.
+
+## Release Artifacts
+
+There are a number of artifacts which are used by various scripts including the
+dbt utilities which are built via github actions during release. To trigger the
+build, create releases linked to a semantic version preceded with a v (i.e.
+v1.0.1).
+
+These artifacts include:
+
+- SQL Alchemy model
+- dbt model yml file
+- SQL Schema
+- data dictionary conformant to the current FTD spec
+- enumerations csv file extracted from all of the permissible values
+
+The last two are used by this group's dbt utilities tooling. The SQL Alchemy
+model is used by a handful of other scripts.
diff --git a/config.yaml b/config.yaml
index c038281..c37997f 100644
--- a/config.yaml
+++ b/config.yaml
@@ -6,6 +6,7 @@
# By default all generators are run. Specify here the ones to skip.
excludes:
- markdown
+ - graphql
# Alternatively only specify the generators to run
# (comment out the above "excludes" section)
diff --git a/docs/dbt_artifacts.md b/docs/dbt_artifacts.md
new file mode 100644
index 0000000..bea96d0
--- /dev/null
+++ b/docs/dbt_artifacts.md
@@ -0,0 +1,90 @@
+# Custom Artifact Generation (dbt)
+
+We have a handful of custom scripts that build various artifacts required by
+different components of the various data pipeline components. These should all
+be handled by the CI/CD pipeline and added to the release's Assets list.
+
+- The SQL Alchemy model is available directly from the assets list as a whl file
+ and can be added to your python distribution using @git+{url} syntax.
+- The all artifacts generated by the _just site_ recipe can be found inside the
+ release assets' _project_artifacts.zip_ file.
+
+To trigger the production of these assets, a new release should be created with
+a semantic version based tag that starts with v: v1.0.0, etc.
+
+## The dbt Recipe
+
+A dumb wrapper recipe has been created with dependencies to trigger the
+production of each of those dbt related artifacts.
+
+This recipe has been added as a dependency of the standard recipe, _site_.
+
+```bash
+just dbt
+```
+
+Example command to add the model to your uv based python project:
+
+```bash
+uv add common_access_model@https://github.com/include-dcc/common-access-model/releases/download/0.0.1/common_access_model-0.0.0.post89.dev0+d378cee-py3-none-any.whl
+```
+
+Please note the _releases/download/0.0.1_ portion of the url. That is to a
+specific version of the model itself, which is by design. You will need to
+update your project each time you want to update to a new model.
+
+In a similar fashion, you can install it via pip or add it to your
+pyproject.toml file using a similar pattern.
+
+### SQL Alchemy Model
+
+Many of our tools rely on the SQL Alchemy models produced using LinkML's SQL
+Alchemy generator. We've added just recipe's to run build these:
+
+```bash
+just sqla
+```
+
+The resulting file is found inside _project/sqlalchemy/{model_name}.py_
+
+### Data Dictionary csv files
+
+The pipeline utitilies created by the FTD team rely on csv data dictionaries to
+the target .sql files.
+
+```bash
+just _gen_ftddd
+```
+
+Resulting csv files can be found inside: _project/data-dictionary/\*.csv_
+
+Each class from the model and any of the SQL specific join tables will be found
+in their own file, conforming to the
+[FTD DD Format](https://nih-ncpi.github.io/map-dragon/#/datadictionary).
+
+### Model Enums
+
+This is a CSV file that contains each enumeration and it's home within the
+datamodel. It is used by the dbt pipeline utitilies. This is a secondary
+artifact from the _gen_ftddd recipe.
+
+The resulting file is found inside _project/enumerations/model_enums.csv_
+
+### dbt Model
+
+A complete model that can be immediately dropped into your dbt pipeline can be
+generated that features various dbt tests based on the model's definition
+including:
+
+- valid_uri_format
+- foreign key target must exist
+- uri-or-curie
+- multi-column keys
+- not null
+- unique
+- allowable values
+
+The resulting file is found inside _project/dbt/src_dev_include_access.yml_
+
+The filename is purely a placeholder and should be renamed to whatever makes
+sense for your needs.
diff --git a/justfile b/justfile
index adddddd..58457b0 100644
--- a/justfile
+++ b/justfile
@@ -76,12 +76,7 @@ clean: _clean_project
# (Re-)Generate project and documentation locally
[group('model development')]
-site: gen-project gen-doc gensqla
-
-# SQL Alchemy model
-[group('model development')]
-gensqla: _gen_sqla
-
+site: gen-project gen-doc dbt
# Deploy documentation site to Github Pages
[group('deployment')]
@@ -95,7 +90,7 @@ test: _test-schema _test-python _test-examples
# Run linting
[group('model development')]
lint:
- uv run linkml-lint {{source_schema_dir}}
+ uv run linkml-lint --config .linkml-linter.yaml {{source_schema_dir}}
# Generate md documentation for the schema
[group('model development')]
@@ -118,7 +113,7 @@ gen-python:
# Generate project files including Python data model
[group('model development')]
-gen-project: _merge_common
+gen-project:
uv run gen-project {{config_yaml}} -d {{dest}} {{source_schema_path}}
mv {{dest}}/*.py {{pymodel}}
uv run gen-pydantic {{gen_pydantic_args}} {{source_schema_path}} > {{pymodel}}/{{schema_name}}_pydantic.py
diff --git a/mkdocs.yml b/mkdocs.yml
index 28d4a18..19f789e 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -21,6 +21,33 @@ plugins:
# scripts:
# - gen_pages.py # or any other name or path
+
+markdown_extensions:
+ - pymdownx.superfences:
+ # https://mkdocs-mermaid2.readthedocs.io/en/latest/superfences
+ # custom code highlighting rules
+ custom_fences:
+ - name: mermaid
+ # disable code highlighting to display diagrams
+ format: !!python/name:pymdownx.superfences.fence_code_format
+ class: mermaid
+ # https://facelessuser.github.io/pymdown-extensions/extensions/magiclink/
+ # auto-link HTML, FTP, and email links
+ - pymdownx.magiclink
+ # https://squidfunk.github.io/mkdocs-material/setup/extensions/python-markdown/#admonition
+ # support for call-outs
+ - admonition
+ # https://squidfunk.github.io/mkdocs-material/setup/extensions/python-markdown/#tables
+ # create tables
+ - tables
+ # https://squidfunk.github.io/mkdocs-material/setup/extensions/python-markdown/#attribute-lists
+ # enables use of HTML attributes and CSS classes to applicable elements
+ - attr_list
+ # https://squidfunk.github.io/mkdocs-material/setup/extensions/python-markdown/#markdown-in-html
+ # write markdown inside of HTML
+ - md_in_html
+
+
watch:
- src/include_access_model/schema
@@ -28,6 +55,7 @@ nav:
# - Home: index.md
- Schema: elements/index.md
- ER Diagram: elements/erdiagram.md
+ - dbt: dbt_artifacts
- About: about.md
exclude_docs: |
diff --git a/project.justfile b/project.justfile
index d5b1104..8ddfc31 100644
--- a/project.justfile
+++ b/project.justfile
@@ -3,11 +3,26 @@
# Overriding recipes from the root justfile by adding a recipe with the same
# name in this file is not possible until a known issue in just is fixed,
# https://github.com/casey/just/issues/2540
+
+# Support for various dbt related tasks
[group('model development')]
-_merge_common:
- git submodule update --init --recursive
+dbt: gen-sqla gen-ftddd gen-dbtmodel
+# SQL Alchemy model
[group('model development')]
-_gen_sqla:
+gen-sqla:
mkdir -p {{dest}}/sqlalchemy && \
uv run gen-sqla {{source_schema_path}} --declarative > {{dest}}/sqlalchemy/{{schema_name}}.py
+
+
+[group('model development')]
+gen-ftddd:
+ uv run linkml_extract_dd {{source_schema_path}}
+
+[group('model development')]
+gen-dbtmodel:
+ uv run gen-dbtmodel
+
+[group('model development')]
+update-cam:
+ uv run update-cam -l src/include_access_model/schema/include_access_model.yaml -d src/include_access_model/schema/upstream-models
diff --git a/pyproject.toml b/pyproject.toml
index 854837f..1aafbff 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,5 +1,7 @@
[build-system]
-requires = ["hatchling", "uv-dynamic-versioning"]
+requires = ["hatchling",
+ "uv-dynamic-versioning",
+ "the-caddie"]
build-backend = "hatchling.build"
[project]
@@ -11,19 +13,22 @@ authors = [
license = "MIT"
license-files = ["LICENSE"]
readme = "README.md"
-requires-python = ">=3.9,<4.0"
+requires-python = ">=3.10,<4.0"
dynamic = ["version"]
dependencies = [
- "linkml>=1.9.6",
- "linkml-runtime >=1.9.4",
+
+ "hatchling>=1.32.0",
+ "linkml>=1.11.0",
+ "linkml-runtime>=1.11.0",
+ "the-caddie",
]
[dependency-groups]
dev = [
- "linkml>=1.9.3",
"mkdocs-material>=8.2.8",
"mkdocs-mermaid2-plugin>=1.1.1",
+ "mkdocs-pymdownx-material-extras>=2.5.6",
"jupyter>=1.0.0",
"mknotebooks>= 0.8.0",
]
@@ -38,12 +43,19 @@ source = "uv-dynamic-versioning"
[tool.uv-dynamic-versioning]
vcs = "git"
style = "pep440"
+pattern = "^v?(?P\\d+\\.\\d+\\.\\d+)"
fallback-version = "0.0.0"
# Ref.: https://docs.pytest.org/en/stable/reference/reference.html#configuration-options
[tool.pytest.ini_options]
testpaths = ["tests"]
+# https://docs.astral.sh/ruff/configuration/
+[tool.ruff]
+exclude = [
+ "src/kf_access_model/_version.py",
+]
+
# Ref.: https://github.com/codespell-project/codespell
[tool.codespell]
skip = [
@@ -59,9 +71,14 @@ skip = [
ignore-words-list = "linke"
quiet-level = 3
+# Activate the hook
+[tool.hatch.build.targets.wheel.hooks.caddie-sqla]
+
+
# Ref.: https://github.com/crate-ci/typos (spell checker)
[tool.typos.default.extend-words]
linke = "linke"
+
[tool.typos.files]
extend-exclude = [
"LICENSE",
@@ -71,3 +88,7 @@ extend-exclude = [
"src/include_access_model/datamodel/include_access_model_pydantic.py",
"src/include_access_model/datamodel/include_access_model.py",
]
+
+[tool.uv.sources]
+the-caddie = { git = "https://github.com/carrollaboratory/the-caddie" }
+#the-caddie = { path = "/home/torstees/dev/the-caddie" }
diff --git a/src/include_access_model/schema/common-access-model b/src/include_access_model/schema/common-access-model
deleted file mode 160000
index a2e29d4..0000000
--- a/src/include_access_model/schema/common-access-model
+++ /dev/null
@@ -1 +0,0 @@
-Subproject commit a2e29d45acdf545c8387dc33e7ae5ba54fea2659
diff --git a/src/include_access_model/schema/include_access_model.yaml b/src/include_access_model/schema/include_access_model.yaml
index 526b0ae..be987b8 100644
--- a/src/include_access_model/schema/include_access_model.yaml
+++ b/src/include_access_model/schema/include_access_model.yaml
@@ -1,50 +1,99 @@
----
id: https://includedcc.org/include-access-model
name: include-access-model
title: INCLUDE DCC Access Model
description: LinkML Schema for the internal INCLUDE DCC Access Model
license: MIT
see_also:
- - https://includedcc.github.io/include-access-model
+- https://includedcc.github.io/include-access-model
prefixes:
includedcc: https://includedcc.org/include-access-model/
- cam: https://includedcc.org/common-access-model/
- linkml: https://w3id.org/linkml/
- schema: http://schema.org/
# subset of CDC Race and Ethnicity Code Set Version 1.0
cdc_race_eth: urn:oid:2.16.840.1.113883.6.238/
- hl7_null: http://terminology.hl7.org/CodeSystem/v3-NullFlavor/
ig_dob_method: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-date-of-birth-method/
igcondtype: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type/
ig2dac: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/
ig2dat: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-type/
ig2_biospecimen_availability: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/biospecimen-availability/
- snomed_ct: http://snomed.info/id/
- MONDO: http://purl.obolibrary.org/obo/MONDO_
- HP: http://purl.obolibrary.org/obo/HP_
- mesh: http://id.nlm.nih.gov/mesh/
- NCIT: http://purl.obolibrary.org/obo/NCIT_
- PATO: http://purl.obolibrary.org/obo/PATO_
- DUO: http://purl.obolibrary.org/obo/DUO_
-
+ snomed_ct: http://snomed.info/id/
+ cam:
+ prefix_prefix: cam
+ prefix_reference: https://includedcc.org/common-access-model/
+ linkml:
+ prefix_prefix: linkml
+ prefix_reference: https://w3id.org/linkml/
+ schema:
+ prefix_prefix: schema
+ prefix_reference: http://schema.org/
+ CDCREC:
+ prefix_prefix: CDCREC
+ prefix_reference: urn:oid:2.16.840.1.113883.6.238/
+ hl7_null:
+ prefix_prefix: hl7_null
+ prefix_reference: http://terminology.hl7.org/CodeSystem/v3-NullFlavor/
+ snomedct:
+ prefix_prefix: snomedct
+ prefix_reference: http://snomed.info/id/
+ MONDO:
+ prefix_prefix: MONDO
+ prefix_reference: http://purl.obolibrary.org/obo/MONDO_
+ HP:
+ prefix_prefix: HP
+ prefix_reference: http://purl.obolibrary.org/obo/HP_
+ mesh:
+ prefix_prefix: mesh
+ prefix_reference: http://id.nlm.nih.gov/mesh/
+ NCIT:
+ prefix_prefix: NCIT
+ prefix_reference: http://purl.obolibrary.org/obo/NCIT_
+ PATO:
+ prefix_prefix: PATO
+ prefix_reference: http://purl.obolibrary.org/obo/PATO_
+ DUO:
+ prefix_prefix: DUO
+ prefix_reference: http://purl.obolibrary.org/obo/DUO_
+ loinc:
+ prefix_prefix: loinc
+ prefix_reference: https://loinc.org/
+ KIN:
+ prefix_prefix: KIN
+ prefix_reference: http://purl.org/ga4gh/kin.owl#
+ edam:
+ prefix_prefix: edam
+ prefix_reference: http://edamontology.org
+ OBI:
+ prefix_prefix: OBI
+ prefix_reference: http://purl.obolibrary.org/obo/OBI_
+ MS:
+ prefix_prefix: MS
+ prefix_reference: http://purl.obolibrary.org/obo/MS_
+ CHMO:
+ prefix_prefix: CHMO
+ prefix_reference: http://purl.obolibrary.org/obo/CHMO_
+ NCBITaxon:
+ prefix_prefix: NCBITaxon
+ prefix_reference: http://purl.obolibrary.org/obo/NCBITaxon_
+ xsd:
+ prefix_prefix: xsd
+ prefix_reference: http://www.w3.org/2001/XMLSchema#
+ shex:
+ prefix_prefix: shex
+ prefix_reference: http://www.w3.org/ns/shex#
default_prefix: includedcc
default_range: linkml:string
imports:
- - linkml:types
- - common-access-model/src/common_access_model/schema/common_access_model
-
+- upstream-models/common_access_model-0.0.7
classes:
IncludeParticipant:
title: INCLUDE Participant
description: Information specific to INCLUDE participants
is_a: Demographics
slots:
- - down_syndrome_status
+ - down_syndrome_status
-slots:
+slots:
down_syndrome_status:
title: Down Syndrome Status
description: Down Syndrome status of participant
@@ -63,4 +112,3 @@ enums:
title: T21
description: Trisomy 21 (Down syndrome)
meaning: MONDO:0008608
-
diff --git a/src/include_access_model/schema/upstream-models/common_access_model-0.0.7.yaml b/src/include_access_model/schema/upstream-models/common_access_model-0.0.7.yaml
new file mode 100644
index 0000000..d8e321a
--- /dev/null
+++ b/src/include_access_model/schema/upstream-models/common_access_model-0.0.7.yaml
@@ -0,0 +1,28720 @@
+name: common-access-model
+description: LinkML Schema for the Common Access Model
+title: Common Access Model
+see_also:
+- https://includedcc.github.io/common-access-model
+id: https://includedcc.org/common-access-model
+license: MIT
+prefixes:
+ cam:
+ prefix_prefix: cam
+ prefix_reference: https://includedcc.org/common-access-model/
+ linkml:
+ prefix_prefix: linkml
+ prefix_reference: https://w3id.org/linkml/
+ schema:
+ prefix_prefix: schema
+ prefix_reference: http://schema.org/
+ CDCREC:
+ prefix_prefix: CDCREC
+ prefix_reference: urn:oid:2.16.840.1.113883.6.238/
+ hl7_null:
+ prefix_prefix: hl7_null
+ prefix_reference: http://terminology.hl7.org/CodeSystem/v3-NullFlavor/
+ snomedct:
+ prefix_prefix: snomedct
+ prefix_reference: http://snomed.info/id/
+ MONDO:
+ prefix_prefix: MONDO
+ prefix_reference: http://purl.obolibrary.org/obo/MONDO_
+ HP:
+ prefix_prefix: HP
+ prefix_reference: http://purl.obolibrary.org/obo/HP_
+ mesh:
+ prefix_prefix: mesh
+ prefix_reference: http://id.nlm.nih.gov/mesh/
+ NCIT:
+ prefix_prefix: NCIT
+ prefix_reference: http://purl.obolibrary.org/obo/NCIT_
+ PATO:
+ prefix_prefix: PATO
+ prefix_reference: http://purl.obolibrary.org/obo/PATO_
+ DUO:
+ prefix_prefix: DUO
+ prefix_reference: http://purl.obolibrary.org/obo/DUO_
+ loinc:
+ prefix_prefix: loinc
+ prefix_reference: https://loinc.org/
+ KIN:
+ prefix_prefix: KIN
+ prefix_reference: http://purl.org/ga4gh/kin.owl#
+ edam:
+ prefix_prefix: edam
+ prefix_reference: http://edamontology.org
+ OBI:
+ prefix_prefix: OBI
+ prefix_reference: http://purl.obolibrary.org/obo/OBI_
+ MS:
+ prefix_prefix: MS
+ prefix_reference: http://purl.obolibrary.org/obo/MS_
+ CHMO:
+ prefix_prefix: CHMO
+ prefix_reference: http://purl.obolibrary.org/obo/CHMO_
+ NCBITaxon:
+ prefix_prefix: NCBITaxon
+ prefix_reference: http://purl.obolibrary.org/obo/NCBITaxon_
+ xsd:
+ prefix_prefix: xsd
+ prefix_reference: http://www.w3.org/2001/XMLSchema#
+ shex:
+ prefix_prefix: shex
+ prefix_reference: http://www.w3.org/ns/shex#
+default_prefix: cam
+default_range: string
+types:
+ ptGlobalID:
+ name: ptGlobalID
+ description: Dewrangle pt global ID. For FHIR Patient Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ obGlobalID:
+ name: obGlobalID
+ description: Dewrangle ob global ID. For FHIR Observation Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ lsGlobalID:
+ name: lsGlobalID
+ description: Dewrangle ls global ID. For FHIR List Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ orGlobalID:
+ name: orGlobalID
+ description: Dewrangle or global ID. For FHIR Organization Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ grGlobalID:
+ name: grGlobalID
+ description: Dewrangle gr global ID. For FHIR Group Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ sdGlobalID:
+ name: sdGlobalID
+ description: Dewrangle sd global ID. For FHIR ResearchStudy Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ deGlobalID:
+ name: deGlobalID
+ description: Dewrangle de global ID. For FHIR Device Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ bsGlobalID:
+ name: bsGlobalID
+ description: Dewrangle bs global ID. For FHIR Specimen Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ adGlobalID:
+ name: adGlobalID
+ description: Dewrangle ad global ID. For FHIR ActivityDefinition Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ drGlobalID:
+ name: drGlobalID
+ description: Dewrangle dr global ID. For FHIR DocumentReference Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ enGlobalID:
+ name: enGlobalID
+ description: Dewrangle en global ID. For FHIR Encounter Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ coGlobalID:
+ name: coGlobalID
+ description: Dewrangle co global ID. For FHIR Consent Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ diGlobalID:
+ name: diGlobalID
+ description: Dewrangle di global ID. For FHIR Diagnostic Report Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ fmGlobalID:
+ name: fmGlobalID
+ description: Dewrangle __ global ID. For FHIR FamilyMemberHistory Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ pdGlobalID:
+ name: pdGlobalID
+ description: Dewrangle __ global ID. For FHIR PlanDefinition Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ msGlobalID:
+ name: msGlobalID
+ description: Dewrangle __ global ID. For FHIR MedicationStatement Resources.
+ from_schema: https://includedcc.org/common-access-model
+ base: str
+ uri: xsd:string
+ string:
+ name: string
+ description: A character string
+ notes:
+ - In RDF serializations, a slot with range of string is treated as a literal or
+ type xsd:string. If you are authoring schemas in LinkML YAML, the type is referenced
+ with the lower case "string".
+ from_schema: https://w3id.org/linkml/types
+ exact_mappings:
+ - schema:Text
+ base: str
+ uri: xsd:string
+ integer:
+ name: integer
+ description: An integer
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "integer".
+ from_schema: https://w3id.org/linkml/types
+ exact_mappings:
+ - schema:Integer
+ base: int
+ uri: xsd:integer
+ boolean:
+ name: boolean
+ description: A binary (true or false) value
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "boolean".
+ from_schema: https://w3id.org/linkml/types
+ exact_mappings:
+ - schema:Boolean
+ base: Bool
+ uri: xsd:boolean
+ repr: bool
+ float:
+ name: float
+ description: A real number that conforms to the xsd:float specification
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "float".
+ from_schema: https://w3id.org/linkml/types
+ exact_mappings:
+ - schema:Float
+ base: float
+ uri: xsd:float
+ double:
+ name: double
+ description: A real number that conforms to the xsd:double specification
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "double".
+ from_schema: https://w3id.org/linkml/types
+ close_mappings:
+ - schema:Float
+ base: float
+ uri: xsd:double
+ decimal:
+ name: decimal
+ description: A real number with arbitrary precision that conforms to the xsd:decimal
+ specification
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "decimal".
+ from_schema: https://w3id.org/linkml/types
+ broad_mappings:
+ - schema:Number
+ base: Decimal
+ uri: xsd:decimal
+ time:
+ name: time
+ description: A time object represents a (local) time of day, independent of any
+ particular day
+ notes:
+ - URI is dateTime because OWL reasoners do not work with straight date or time
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "time".
+ from_schema: https://w3id.org/linkml/types
+ exact_mappings:
+ - schema:Time
+ base: XSDTime
+ uri: xsd:time
+ repr: str
+ date:
+ name: date
+ description: a date (year, month and day) in an idealized calendar
+ notes:
+ - URI is dateTime because OWL reasoners don't work with straight date or time
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "date".
+ from_schema: https://w3id.org/linkml/types
+ exact_mappings:
+ - schema:Date
+ base: XSDDate
+ uri: xsd:date
+ repr: str
+ datetime:
+ name: datetime
+ description: The combination of a date and time
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "datetime".
+ from_schema: https://w3id.org/linkml/types
+ exact_mappings:
+ - schema:DateTime
+ base: XSDDateTime
+ uri: xsd:dateTime
+ repr: str
+ date_or_datetime:
+ name: date_or_datetime
+ description: Either a date or a datetime
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "date_or_datetime".
+ from_schema: https://w3id.org/linkml/types
+ base: str
+ uri: linkml:DateOrDatetime
+ repr: str
+ uriorcurie:
+ name: uriorcurie
+ description: a URI or a CURIE
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "uriorcurie".
+ from_schema: https://w3id.org/linkml/types
+ base: URIorCURIE
+ uri: xsd:anyURI
+ repr: str
+ curie:
+ name: curie
+ conforms_to: https://www.w3.org/TR/curie/
+ description: a compact URI
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "curie".
+ comments:
+ - in RDF serializations this MUST be expanded to a URI
+ - in non-RDF serializations MAY be serialized as the compact representation
+ from_schema: https://w3id.org/linkml/types
+ base: Curie
+ uri: xsd:string
+ repr: str
+ uri:
+ name: uri
+ conforms_to: https://www.ietf.org/rfc/rfc3987.txt
+ description: a complete URI
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "uri".
+ comments:
+ - in RDF serializations a slot with range of uri is treated as a literal or type
+ xsd:anyURI unless it is an identifier or a reference to an identifier, in which
+ case it is translated directly to a node
+ from_schema: https://w3id.org/linkml/types
+ close_mappings:
+ - schema:URL
+ base: URI
+ uri: xsd:anyURI
+ repr: str
+ ncname:
+ name: ncname
+ description: Prefix part of CURIE
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "ncname".
+ from_schema: https://w3id.org/linkml/types
+ base: NCName
+ uri: xsd:string
+ repr: str
+ objectidentifier:
+ name: objectidentifier
+ description: A URI or CURIE that represents an object in the model.
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "objectidentifier".
+ comments:
+ - Used for inheritance and type checking
+ from_schema: https://w3id.org/linkml/types
+ base: ElementIdentifier
+ uri: shex:iri
+ repr: str
+ nodeidentifier:
+ name: nodeidentifier
+ description: A URI, CURIE or BNODE that represents a node in a model.
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "nodeidentifier".
+ from_schema: https://w3id.org/linkml/types
+ base: NodeIdentifier
+ uri: shex:nonLiteral
+ repr: str
+ jsonpointer:
+ name: jsonpointer
+ conforms_to: https://datatracker.ietf.org/doc/html/rfc6901
+ description: A string encoding a JSON Pointer. The value of the string MUST conform
+ to JSON Point syntax and SHOULD dereference to a valid object within the current
+ instance document when encoded in tree form.
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "jsonpointer".
+ from_schema: https://w3id.org/linkml/types
+ base: str
+ uri: xsd:string
+ repr: str
+ jsonpath:
+ name: jsonpath
+ conforms_to: https://www.ietf.org/archive/id/draft-goessner-dispatch-jsonpath-00.html
+ description: A string encoding a JSON Path. The value of the string MUST conform
+ to JSON Point syntax and SHOULD dereference to zero or more valid objects within
+ the current instance document when encoded in tree form.
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "jsonpath".
+ from_schema: https://w3id.org/linkml/types
+ base: str
+ uri: xsd:string
+ repr: str
+ sparqlpath:
+ name: sparqlpath
+ conforms_to: https://www.w3.org/TR/sparql11-query/#propertypaths
+ description: A string encoding a SPARQL Property Path. The value of the string
+ MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects
+ within the current instance document when encoded as RDF.
+ notes:
+ - If you are authoring schemas in LinkML YAML, the type is referenced with the
+ lower case "sparqlpath".
+ from_schema: https://w3id.org/linkml/types
+ base: str
+ uri: xsd:string
+ repr: str
+enums:
+ EnumAssayType:
+ name: EnumAssayType
+ description: Type of assays performed
+ from_schema: https://includedcc.org/common-access-model/EnumAssayType
+ permissible_values:
+ OBI:0000070:
+ text: OBI:0000070
+ description: assay
+ meaning: OBI:0000070
+ title: assay
+ CHMO:0000087:
+ text: CHMO:0000087
+ description: Any type of light microscopy assay where the specimen can be
+ made to fluoresce (emit energy as visible light) by illuminating it with
+ light of specific wavelengths. These specimens are called fluorophores.
+ meaning: CHMO:0000087
+ title: fluorescence microscopy assay
+ CHMO:0000089:
+ text: CHMO:0000089
+ description: Microscopy where the specimen can be made to fluoresce (emit
+ energy as visible light) by scanning a gas (Ar or Kr) laser spot of specific
+ wavelength over its surface and using a spatial pinhole to eliminate out-of-focus
+ fluorescence.
+ meaning: CHMO:0000089
+ title: confocal fluorescence microscopy assay
+ CHMO:0000102:
+ text: CHMO:0000102
+ description: Microscopy where the specimen is illuminated with visible light
+ and a system of lenses is used to produce an image.
+ meaning: CHMO:0000102
+ title: light microscopy assay
+ CHMO:0000701:
+ text: CHMO:0000701
+ description: A method where a sample mixture is first separated by liquid
+ chromatography before being ionised and characterised by mass-to-charge
+ ratio and relative abundance using two mass spectrometers in series.
+ meaning: CHMO:0000701
+ title: liquid chromatography-tandem mass spectrometry
+ OBI:0000117:
+ text: OBI:0000117
+ description: An assay where the output data is a datum with one of two values
+ denoting success and failure.
+ meaning: OBI:0000117
+ title: Bernoulli trial
+ OBI:0000182:
+ text: OBI:0000182
+ description: A 3D molecular structure determination assay that uses magnetic
+ properties of atomic nuclei to determine the 3D structure and dynamics of
+ molecules in the input sample.
+ meaning: OBI:0000182
+ title: NMR 3D molecular structure determination assay
+ OBI:0000185:
+ text: OBI:0000185
+ description: An assay that produces a picture of an entity.
+ meaning: OBI:0000185
+ title: imaging assay
+ OBI:0000201:
+ text: OBI:0000201
+ description: An assay that measures the amount of radiation in the radioactive
+ spectrum (alpha, beta or gamma rays) emitted from an input material.
+ meaning: OBI:0000201
+ title: radioactivity detection
+ OBI:0000288:
+ text: OBI:0000288
+ description: An assay that determines interactions between proteins, such
+ as protein-protein binding.
+ meaning: OBI:0000288
+ title: protein-protein interaction detection assay
+ OBI:0000291:
+ text: OBI:0000291
+ description: An assay tthat determines DNA regions specifically recognized
+ by proteins that function as transcription factors
+ meaning: OBI:0000291
+ title: transcription factor binding site assay
+ OBI:0000366:
+ text: OBI:0000366
+ description: An assay that detects and identifies chemical entities resulting
+ from biochemical and cellular metabolism
+ meaning: OBI:0000366
+ title: metabolite profiling assay
+ OBI:0000418:
+ text: OBI:0000418
+ description: An assay that determines the concentration of glucose molecules
+ in a blood serum sample
+ meaning: OBI:0000418
+ title: measuring glucose concentration in blood serum assay
+ OBI:0000424:
+ text: OBI:0000424
+ description: An assay that determines gene expression and transcription activity
+ using ribonucleic acids collected from a material entity.
+ meaning: OBI:0000424
+ title: transcription profiling assay
+ OBI:0000433:
+ text: OBI:0000433
+ description: An assay with the objective to determine a sequence feature of
+ DNA
+ meaning: OBI:0000433
+ title: DNA sequence feature detection assay
+ OBI:0000435:
+ text: OBI:0000435
+ description: An assay which generates data about a genotype from a specimen
+ of genomic DNA. A variety of techniques and instruments can be used to produce
+ information about sequence variation at particular genomic positions.
+ meaning: OBI:0000435
+ title: genotyping assay
+ OBI:0000438:
+ text: OBI:0000438
+ description: An assay that measures changes (expansion, amplification, deletion,
+ mutation) in the sequence of a DNA molecule.
+ meaning: OBI:0000438
+ title: DNA sequence variation detection assay
+ OBI:0000443:
+ text: OBI:0000443
+ description: An assay with the objective to capture information about the
+ presence, concentration, or amount of an analyte in an evaluant.
+ meaning: OBI:0000443
+ title: analyte assay
+ OBI:0000445:
+ text: OBI:0000445
+ description: An assay that determines the mass of an evaluant
+ meaning: OBI:0000445
+ title: mass measurement assay
+ OBI:0000447:
+ text: OBI:0000447
+ description: An electrophysiology assay where the recording location of the
+ electrode is intracellular.
+ meaning: OBI:0000447
+ title: intracellular electrophysiology recording assay
+ OBI:0000454:
+ text: OBI:0000454
+ description: An electrophysiology assay where the recording location of the
+ electrode is extracellular.
+ meaning: OBI:0000454
+ title: extracellular electrophysiology recording assay
+ OBI:0000470:
+ text: OBI:0000470
+ description: An assay that identifies the amount and type of material entities
+ present in a sample by fragmenting the sample and measuring the mass-to-charge
+ ratio of the resulting particles.
+ meaning: OBI:0000470
+ title: mass spectrometry assay
+ OBI:0000520:
+ text: OBI:0000520
+ description: An analyte assay which uses analytical methods to produce measurements
+ and data on the concentration of chemical parameters (analytes) present
+ in a specimen collected from an organism in order to determine a phenotype
+ of that organism.
+ meaning: OBI:0000520
+ title: clinical chemistry assay
+ OBI:0000537:
+ text: OBI:0000537
+ description: An assay that determines lost or amplified genomic regions of
+ DNA by comparing genomic DNA originating from tissues from the same or different
+ individuals using specific techniques such as CGH, array CGH, SNP genotyping
+ meaning: OBI:0000537
+ title: copy number variation profiling assay
+ OBI:0000615:
+ text: OBI:0000615
+ description: An assay that determines protein expression and translation activity
+ using protein extracts collected from a material entity.
+ meaning: OBI:0000615
+ title: protein expression profiling assay
+ OBI:0000623:
+ text: OBI:0000623
+ description: An assay that exploits the magnetic properties of certain nuclei
+ (those with a spin) to resonate when placed in particular magnetic field
+ conditions. Instruments recording NMR spectrum and sets of analysis can
+ be used to deduce identity of chemical as well as composition of complex
+ chemical mixtures.
+ meaning: OBI:0000623
+ title: NMR spectroscopy assay
+ OBI:0000626:
+ text: OBI:0000626
+ description: A sequencing assay which determines information on the sequence
+ of a DNA molecule.
+ meaning: OBI:0000626
+ title: DNA sequencing assay
+ OBI:0000630:
+ text: OBI:0000630
+ description: An assay that studies phenotypes of an organism involving its
+ blood and blood producing organs using a variety of techniques and instruments
+ meaning: OBI:0000630
+ title: hematology assay
+ OBI:0000634:
+ text: OBI:0000634
+ description: An assay that measures the state of methylation of DNA molecules
+ using genomic DNA collected from a material entity using a range of techniques
+ and instrument such as DNA sequencers and often relying on treatment with
+ bisulfites to ensure cytosine conversion.
+ meaning: OBI:0000634
+ title: DNA methylation profiling assay
+ OBI:0000661:
+ text: OBI:0000661
+ description: An analyte assay where binding of an enzyme linked antibody to
+ a material entity that is immobilized on solid support is detected utilizing
+ a chemiluminescent reaction. Depending on the setup, the enzyme-linked antibody
+ could be binding directly to the analyte, or it serves as a secondary antibody
+ detecting binding of the primary antibody to the analyte.
+ meaning: OBI:0000661
+ title: enzyme-linked immunosorbent assay
+ OBI:0000664:
+ text: OBI:0000664
+ description: A cell proliferation assay in which cells are cultured in the
+ presence of BrdU which is incorporated into newly synthesized DNA of replicating
+ cells (during the S phase of the cell cycle), substituting for thymidine
+ during DNA replication, which can be quantified by BrdU specific antibodies.
+ meaning: OBI:0000664
+ title: BrdU incorporation assay
+ OBI:0000669:
+ text: OBI:0000669
+ description: A cell proliferation assay in which cells are cultured in the
+ presence of tritiated thymidine which is incorporated into newly synthesized
+ DNA of replicating cells (during the S phase of the cell cycle). The radioactivity
+ of tritiated thymidine in a cell is a proxy for cells that were actively
+ replicating.
+ meaning: OBI:0000669
+ title: tritiated thymidine incorporation assay
+ OBI:0000693:
+ text: OBI:0000693
+ description: A DNA methylation profiling assay that identifies methylated
+ sites in genomic DNA and determines the methylation pattern that affect
+ gene transcription using immunoprecipitation of methylated genomic DNA,
+ creation of a library of corresponding DNA fragments (either single or paired-end
+ fragments) and subsequent sequencing using parallelized sequencing methods.
+ meaning: OBI:0000693
+ title: MeDIP-seq assay
+ OBI:0000695:
+ text: OBI:0000695
+ description: A DNA sequencing assay which rely on the use of dideoxynucleotides
+ used in 4 distinct sequencing reaction on the same DNA sample. The dideoxynucleotides,
+ once incorporated in the complementary DNA strand being synthesized by the
+ DNA polymerase prevent any further chain elongation. The newly generated
+ sequences are resolved on a polyacrylamide gel using electrophoresis and
+ labels (either fluorochrome or radioactivity) are used to determine the
+ nucleotide present at a given position
+ meaning: OBI:0000695
+ title: chain termination sequencing assay
+ OBI:0000697:
+ text: OBI:0000697
+ description: A DNA sequencing by synthesis assay that identifiies the sequnece
+ of billions of DNA molecules immobilized to a surface using DNA polymerase
+ and fluorescently labeled nucleotides added one at a time. The sequencing
+ process does not require an amplification step and is typically able to
+ produce reads of 25 base pair length.
+ meaning: OBI:0000697
+ title: Helicos sequencing assay
+ OBI:0000699:
+ text: OBI:0000699
+ description: An assay that measures the occurrence of death events in one
+ or more organisms over time
+ meaning: OBI:0000699
+ title: survival assessment assay
+ OBI:0000705:
+ text: OBI:0000705
+ description: A sequencing assay in which the amino acid sequence of input
+ peptides or proteins is determined by iteratively cleaving of the amino-terminal
+ (N-terminal) residue without disrupting the peptide bonds and identifying
+ it by e.g. chromatography or electropheresis.
+ meaning: OBI:0000705
+ title: Edman degradation
+ OBI:0000706:
+ text: OBI:0000706
+ description: A DNA sequencing by ligation assay that identifies sequence information
+ using primers to hybridize to the P1 adapter sequence within the library
+ template, fluorescently labeled di-base probes to compete for ligation to
+ the sequencing primer, multiple cycles of ligation, detection and cleavage
+ to determine the eventual read length, following a series of ligation cycles,
+ the extension product is removed and the template is reset with a primer
+ complementary to the n-1 position for a second round of ligation cycles.
+ meaning: OBI:0000706
+ title: SOLiD sequencing assay
+ OBI:0000716:
+ text: OBI:0000716
+ description: An assay in which chromatin is immunoprecipitated and subsequently
+ analyzed using a DNA sequencing step to identify which parts of DNA are
+ part of the isolated chromatin
+ meaning: OBI:0000716
+ title: ChIP-seq assay
+ OBI:0000721:
+ text: OBI:0000721
+ description: An assay that measures glucose clearance from blood over time
+ by repeated glucose measurement in blood serum or plasma after the administration
+ of a glucose bolus in-vivo. This assay can be used to evaluate the severity
+ of insulin resistance or the efficiency of glucose clearance.
+ meaning: OBI:0000721
+ title: glucose tolerance test
+ OBI:0000723:
+ text: OBI:0000723
+ description: A DNA sequencing assay that performs chain extension during the
+ sequencing reaction step using DNA ligase
+ meaning: OBI:0000723
+ title: DNA sequencing by ligation assay
+ OBI:0000724:
+ text: OBI:0000724
+ description: A DNA sequencing by synthesis assay that identifies sequence
+ information using DNA polymerase and reversible terminator, requiring immobilization
+ of genomic DNA fragments onto a surface and a specific clonal amplification
+ step known as bridge PCR. Reliance on a reversible terminator allows cycles
+ of DNA chain extension by DNA polymerase and imaging without the need of
+ electrophoretic separation of newly synthesized DNA fragment as with Sanger
+ sequencing.
+ meaning: OBI:0000724
+ title: Solexa sequencing assay
+ OBI:0000730:
+ text: OBI:0000730
+ description: A DNA sequencing by synthesis assay which sequences a single
+ strand of DNA by synthesizing the complementary strand along it, one base
+ pair at a time, and detecting which base was actually added at each step.
+ The template DNA is immobilized, and solutions of A, C, G, and T nucleotides
+ are added and removed after the reaction, sequentially. Light is produced
+ only when the nucleotide solution complements the first unpaired base of
+ the template. The sequence of solutions which produce chemiluminescent signals
+ allows the determination of the sequence of the template. ssDNA template
+ is hybridized to a sequencing primer and incubated with the enzymes DNA
+ polymerase, ATP sulfurylase, luciferase and apyrase, and with the substrates
+ adenosine 5-prime phosphosulfate (APS) and luciferin.
+ meaning: OBI:0000730
+ title: pyrosequencing assay
+ OBI:0000734:
+ text: OBI:0000734
+ description: A DNA sequencing assay that relies on DNA polymerase activity
+ to perform chain extension during the sequencing reaction step.
+ meaning: OBI:0000734
+ title: DNA sequencing by synthesis assay
+ OBI:0000743:
+ text: OBI:0000743
+ description: An assay that determines information about an immune response
+ meaning: OBI:0000743
+ title: immune response assay
+ OBI:0000748:
+ text: OBI:0000748
+ description: A DNA methylation profiling assay which determines the methylation
+ status of genomic DNA using DNA sequencing techniques preceded by a bisulfite
+ based chemical modification of genomic DNA at CpG island location.
+ meaning: OBI:0000748
+ title: bisulfite sequencing assay
+ OBI:0000787:
+ text: OBI:0000787
+ description: An assay that measures the amount of antithrombin III in blood.
+ meaning: OBI:0000787
+ title: human antithrombin-III in blood assay
+ OBI:0000802:
+ text: OBI:0000802
+ description: An assay that measures the prothrombin ratio, which is the prothrombin
+ time for a patient, divided by the result for control plasma. Most commonly
+ the test is preformed using blood plasma. Blood is drawn into a test tube
+ containing liquid citrate, which acts as an anticoagulant. An excess of
+ calcium is added to enable the blood to clot again.Tissue factor (also known
+ as factor III or thromboplastin) is added, and the time the sample takes
+ to clot is measured optically as the prothrombin time, which is compared
+ to a control sample.
+ meaning: OBI:0000802
+ title: prothrombin time assay
+ OBI:0000805:
+ text: OBI:0000805
+ description: An antithrombin-III (AT-III) assay in which exogenous bovine
+ thrombin and heparin are added to test plasma to form a thrombin-heparin-AT
+ complex. The residual thrombin not bound then hydrolyzes the p-nitroalanine
+ substrate to produce a yellow color, which is read at 405 nm. The intensity
+ of color produced is inversely proportional to the AT present. A calibration
+ is done with standard human plasma reagent and results for a given specimen
+ are reported as a percentage relative to the standard
+ meaning: OBI:0000805
+ title: antithrombin-III berichrome assay
+ OBI:0000808:
+ text: OBI:0000808
+ description: An assay that quantitatively measures heparin in human plasma
+ using Factor Xa and Antithrombin III in excess, where the rate of Factor
+ Xa inhibition is directly proportional to the heparin concentration. The
+ residual Factor Xa activity, measured with a Factor Xa-specific chromogenic
+ substrate, is inversely proportional to the heparin concentration.
+ meaning: OBI:0000808
+ title: spectrolyse heparin antifactor-Xa assay
+ OBI:0000812:
+ text: OBI:0000812
+ description: An assay that measures neural activity in the caudate nucleus
+ meaning: OBI:0000812
+ title: measuring neural activity in the caudate nucleus assay
+ OBI:0000820:
+ text: OBI:0000820
+ description: An assay that evaluates blood coagulation by measuring the time
+ required for the appearance of fibrin strands following the mixing blood
+ or plasma with phospholipid platelet substitute (e.g., crude cephalins,
+ soybean phosphatides). It is a test of the intrinsic pathway (factors VIII,
+ IX, XI, and XII) and the common pathway (fibrinogen, prothrombin, factors
+ V and X) of blood coaguation . It is used as a screening test and to monitor
+ heparin therapy.
+ meaning: OBI:0000820
+ title: activated partial thromboplastin time assay
+ OBI:0000823:
+ text: OBI:0000823
+ description: An assay that measures the time between the addition of the thrombin
+ and the clot formation in plasma.
+ meaning: OBI:0000823
+ title: thrombin time assay
+ OBI:0000854:
+ text: OBI:0000854
+ description: An analyte assay that detects specific peptides in an input material
+ by separating it using gel electrophoresis, transfering the separated molecules
+ to a membrane, and staining them with_ antibodies specific to the analyte
+ molecules.
+ meaning: OBI:0000854
+ title: western blot assay
+ OBI:0000860:
+ text: OBI:0000860
+ description: An assay that determines the presence of gene transcripts by
+ hybridizing labeled RNA or DNA probes against messenger RNAs isolated from
+ tissue or cell cultures, resolved on denaturing gel, transfered by a blotting
+ procedure to a solid support. Detection of hybridization signals is carried
+ out by immunofluorescence or radioactivity measurements using photographic
+ films or digital imaging devices such as Phosphor Imager.
+ meaning: OBI:0000860
+ title: northern blot assay
+ OBI:0000865:
+ text: OBI:0000865
+ description: A serum neutralization of viral infectivity assay which is performed
+ in a 96-well plate.
+ meaning: OBI:0000865
+ title: 96-well neutralization assay
+ OBI:0000870:
+ text: OBI:0000870
+ description: An assay that provides information about the secondary structure
+ of nucleic acids using chemical or enzymatic probing to establish the extent
+ of base-pairing or solvent accessiblity.
+ meaning: OBI:0000870
+ title: single-nucleotide-resolution nucleic acid structure mapping assay
+ OBI:0000871:
+ text: OBI:0000871
+ description: An assay that quantifies viruses by their hemagglutination activity.
+ meaning: OBI:0000871
+ title: viral hemagglutination assay
+ OBI:0000872:
+ text: OBI:0000872
+ description: An analyte assay that measures virus-neutralizing abilities of
+ different sera. Different dilutions of serum are mixed with virus and used
+ to infect cells. At the lower dilutions, antibodies will block infection,
+ but at higher dilutions, there will be too few antibodies to have an effect.The
+ neutralization titer is expressed as the reciprocal of the highest dilution
+ at which virus infection is blocked.
+ meaning: OBI:0000872
+ title: serum neutralization of viral infectivity assay
+ OBI:0000874:
+ text: OBI:0000874
+ description: An analyte assay in which a specified input material (the evaluant)
+ is examined for the presence or quantity of specified nucleic acid polymers,
+ which are identified based on the use of complementary nucleic acid probes.
+ meaning: OBI:0000874
+ title: detection of specific nucleic acid polymers with complementary probes
+ OBI:0000875:
+ text: OBI:0000875
+ description: An assay that measures the ability of an evaluant to inhibit
+ hemagglutination by a virus. Hemagglutinin is a viral protein which binds
+ to sialic acid receptors on cells or to erythrocytes, causing the cells
+ to clump. Loss of clumping indicates that the evaluant blocks binding of
+ hemagglutinin to sialic acid receptors.
+ meaning: OBI:0000875
+ title: viral hemagglutination inhibition assay
+ OBI:0000882:
+ text: OBI:0000882
+ description: A cytometry assay that monitors a cell population to track how
+ many are killed by other cells.
+ meaning: OBI:0000882
+ title: cell-cell killing assay
+ OBI:0000883:
+ text: OBI:0000883
+ description: A cell killing assay that measures if and how many target cells
+ are killed within an organism.
+ meaning: OBI:0000883
+ title: in vivo cell killing assay
+ OBI:0000891:
+ text: OBI:0000891
+ description: A cytometry assay which measures the degreee to which input cells
+ are replicating.
+ meaning: OBI:0000891
+ title: cell proliferation assay
+ OBI:0000892:
+ text: OBI:0000892
+ description: An analyte assay that detects the presence of a specific sequence
+ in a DNA sample, which has been digested by restriction enzymes, resolved
+ by gel electrophoresis, and blotted to a solid support, followed by hybridization
+ of a probe raised against a specific sequence and detected with fluorescence
+ or radioactivity.
+ meaning: OBI:0000892
+ title: Southern blot assay
+ OBI:0000893:
+ text: OBI:0000893
+ description: An assay, based on the PCR, that amplifies and simultaneously
+ quantifies a specific DNA molecule based on the use of complementary probes/primers.
+ It enables both detection and quantification (as absolute number of copies
+ or relative amount when normalized to DNA input or additional normalizing
+ genes) of one or more specific sequences in a DNA sample.
+ meaning: OBI:0000893
+ title: real time polymerase chain reaction assay
+ OBI:0000897:
+ text: OBI:0000897
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay which determines nucleic acid secondary structure at a nucleotide
+ resolution scale using DEPC as reagent and chemical probe
+ meaning: OBI:0000897
+ title: DEPC structure mapping assay
+ OBI:0000903:
+ text: OBI:0000903
+ description: A cell killing assay that measures if and how many target cells
+ are actively killed by other cells in a cell culture.
+ meaning: OBI:0000903
+ title: in vitro cell killing assay
+ OBI:0000904:
+ text: OBI:0000904
+ description: An analyte assay in which a cell line whose growth is known to
+ be affected by the presence of a specific type of material (the anlyte)
+ is cultured in the presence of an input material (the evaluant) in order
+ to detect presence of the analyte in the evaluant.
+ meaning: OBI:0000904
+ title: reporter cell line analyte detection bioassay
+ OBI:0000910:
+ text: OBI:0000910
+ description: An assay in which a radioactive labeled antigen or antibody is
+ used to determine the interaction between an antigen and its receptor. This
+ can be used to detect the presence of an antigen of interest in an input
+ sample or determine the specificity of an input antibody.
+ meaning: OBI:0000910
+ title: radio immuno assay
+ OBI:0000911:
+ text: OBI:0000911
+ description: An assay that uses a reverse transcription step (an RNA strand
+ is reverse transcribed into its DNA complement using the enzyme reverse
+ transcriptase) before a PCR assay.
+ meaning: OBI:0000911
+ title: real time reverse-transcription polymerase chain reaction assay
+ OBI:0000912:
+ text: OBI:0000912
+ description: A 3D molecular structure determination assay in which the diffraction
+ of pattern of X-ray beams in a crystal of purified material entities is
+ used to resolve the 3-dimensional structure of the material entity of interest.
+ meaning: OBI:0000912
+ title: X-ray crystallography 3D molecular structure determination assay
+ OBI:0000913:
+ text: OBI:0000913
+ description: An assay in which the activity of a promoter in a cell is monitored
+ by using a reporter gene that was inserted in a genomic location under control
+ of the promoter and whose expression can be easily detected based on qualities
+ or functions of the gene.
+ meaning: OBI:0000913
+ title: promoter activity detection by reporter gene assay
+ OBI:0000916:
+ text: OBI:0000916
+ description: A cytometry assay in which an input cell population is put in
+ solution, is passed by a laser, and optical sensors are used to detect scattering
+ of the laser light and/or fluorescence of specific markers to count and
+ characterize the particles in solution.
+ meaning: OBI:0000916
+ title: flow cytometry assay
+ OBI:0000920:
+ text: OBI:0000920
+ description: An analyte assay in which a series of beads coated with antibodies,
+ antigens, or other small molecules are used to detect an analyte of interest.
+ meaning: OBI:0000920
+ title: cytometric bead array assay
+ OBI:0000923:
+ text: OBI:0000923
+ description: A binding assay that uses the detection of electromagnetic waves
+ in a surface to detect material entities adsorbed to the surface, which
+ change the local optical index of refraction.
+ meaning: OBI:0000923
+ title: surface plasmon resonance binding assay
+ OBI:0000944:
+ text: OBI:0000944
+ description: An assay that measures the unequal distribution of fine motor
+ skill between the left and right hands typically in human subjects by means
+ of some questionnaire and scoring procedure.
+ meaning: OBI:0000944
+ title: handedness assay
+ OBI:0000957:
+ text: OBI:0000957
+ description: An assay where a person makes a statement that indicates what
+ handedness he has from a choice of different categories.
+ meaning: OBI:0000957
+ title: self reported handedness assessment
+ OBI:0000964:
+ text: OBI:0000964
+ description: An assay in which a measurement is made by observing entities
+ located in a live cell.
+ meaning: OBI:0000964
+ title: in live cell assay
+ OBI:0000966:
+ text: OBI:0000966
+ description: An assay in which a measurement is made by observing entities
+ located in an organism.
+ meaning: OBI:0000966
+ title: in live organism assay
+ OBI:0000975:
+ text: OBI:0000975
+ description: A binding assay which uses a flow cytometer to detect pairs of
+ cells that are bound to each other by staining them with different fluorescent
+ labels.
+ meaning: OBI:0000975
+ title: cell-cell binding detection by flow cytometry assay
+ OBI:0000978:
+ text: OBI:0000978
+ description: An assay in which a measurement is made by observing entities
+ located in a container.
+ meaning: OBI:0000978
+ title: in container assay
+ OBI:0001001:
+ text: OBI:0001001
+ description: An assay that uses a set of questions (the Edinburgh Handedness
+ inventory) to generate a score that can be used to assess the dominance
+ of a person's right or left hand in everyday activities. The inventory can
+ be used by an observer assessing the person, or by a person self-reporting
+ hand use. The latter method tends to be less reliable due to a person over-attributing
+ tasks to the dominant hand.
+ meaning: OBI:0001001
+ title: Edinburgh handedness assay
+ OBI:0001005:
+ text: OBI:0001005
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at a nucleotide resolution
+ scale using RNAse CL3 as reagent and enzymatic probe.
+ meaning: OBI:0001005
+ title: RNASE CL3 structure mapping assay
+ OBI:0001006:
+ text: OBI:0001006
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay which uses CMCT as reagent and chemical probe to generate data and
+ information at nucleotide resolution scale contributing to the determination
+ of nucleic acid secondary structure
+ meaning: OBI:0001006
+ title: CMCT structure mapping assay
+ OBI:0001008:
+ text: OBI:0001008
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using Fe-MP as reagent and chemical probe.
+ meaning: OBI:0001008
+ title: MPE-Fe(II) structure mapping assay
+ OBI:0001011:
+ text: OBI:0001011
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay that determines the secondary structure of a nucleic acid at the nucleotide
+ resolution scale which uses ENU as reagent and chemical probe
+ meaning: OBI:0001011
+ title: ENU structure mapping assay
+ OBI:0001012:
+ text: OBI:0001012
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at a nucleotide resolution
+ scale using RNAse V1 as reagent and enzymatic probe
+ meaning: OBI:0001012
+ title: RNASE V1 structure mapping assay
+ OBI:0001013:
+ text: OBI:0001013
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at nucleotide resolution
+ scale using kethoxal as reagent and chemical probe
+ meaning: OBI:0001013
+ title: kethoxal structure mapping assay
+ OBI:0001014:
+ text: OBI:0001014
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay that determines structural information about the RNA species under
+ study using proteins acting as enzymatic probes.
+ meaning: OBI:0001014
+ title: single-nucleotide-resolution nucleic acid structure mapping assay using
+ enzymatic probing
+ OBI:0001015:
+ text: OBI:0001015
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay which determins nucleic acid secondary structure at a nucleotide resolution
+ scale using DMS as reagent and chemical probe
+ meaning: OBI:0001015
+ title: DMS structure mapping assay
+ OBI:0001016:
+ text: OBI:0001016
+ description: A single-nucleotide-resolution deoxyribonucleic acid structure
+ mapping assay which uses DNAse 1 as reagent and enzymatic probe to generate
+ data and information at nucleotide resolution scale contributing to the
+ determination of nucleic acid secondary structure
+ meaning: OBI:0001016
+ title: DNASE 1 structure mapping assay
+ OBI:0001017:
+ text: OBI:0001017
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay that determines structural information about the RNA species under
+ study using small chemical compounds acting as chemical probes.
+ meaning: OBI:0001017
+ title: single-nucleotide-resolution nucleic acid structure mapping assay using
+ chemical probing
+ OBI:0001018:
+ text: OBI:0001018
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at a nucleotide resolution
+ scale using Rhodium as reagent and chemical probe.
+ meaning: OBI:0001018
+ title: Rhodium DNA structure mapping assay
+ OBI:0001019:
+ text: OBI:0001019
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at a nucleotide resolution
+ scale using RNA adenosine deaminase I as reagent and enzymatic probe.
+ meaning: OBI:0001019
+ title: RNA ADA I RNA structure mapping assay
+ OBI:0001020:
+ text: OBI:0001020
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at nucleotide resolution
+ scale using lead as reagent and chemical probe
+ meaning: OBI:0001020
+ title: Lead structure mapping assay
+ OBI:0001021:
+ text: OBI:0001021
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at a nucleotide resolution
+ scale using RNAse T2 as reagent and enzymatic probe
+ meaning: OBI:0001021
+ title: RNASE T2 structure mapping assay
+ OBI:0001022:
+ text: OBI:0001022
+ description: An assay that measures changes in phenotype due to increased
+ or decreased dosage of a single allele of a gene.
+ meaning: OBI:0001022
+ title: gene dosage assay
+ OBI:0001023:
+ text: OBI:0001023
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic secondary structure at a nucleotide resolution
+ scale using Fe-BABE as reagent and chemical probe.
+ meaning: OBI:0001023
+ title: Fe-BABE RNA structure mapping assay
+ OBI:0001024:
+ text: OBI:0001024
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at a nucleotide resolution
+ scale using RNAase U2 as reagent and enzymatic probe
+ meaning: OBI:0001024
+ title: RNASE U2 structure mapping assay
+ OBI:0001025:
+ text: OBI:0001025
+ description: A binding assay where the specified output is a binding constant
+ meaning: OBI:0001025
+ title: binding constant determination assay
+ OBI:0001026:
+ text: OBI:0001026
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using NMIA as reagent and chemical probe
+ meaning: OBI:0001026
+ title: NMIA RNA structure mapping assay
+ OBI:0001027:
+ text: OBI:0001027
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at a nucleotide resolution
+ scale using Terbium as reagent and chemical probe
+ meaning: OBI:0001027
+ title: Terbium RNA structure mapping assay
+ OBI:0001029:
+ text: OBI:0001029
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay hat determines nucleic acid secondary structure at a nucleotide resolution
+ scale using hydroxyl radical as reagent and chemical probe
+ meaning: OBI:0001029
+ title: OH-radical structure mapping assay
+ OBI:0001030:
+ text: OBI:0001030
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at a nucleotide resolution
+ scale uses RNAse T1 as reagent and enzymatic probe.
+ meaning: OBI:0001030
+ title: RNASE T1 structure mapping assay
+ OBI:0001035:
+ text: OBI:0001035
+ description: A single-nucleotide-resolution deoxyribonucleic acid structure
+ mapping assay that determines nucleic acid secondary structure at a nucleotide
+ resolution scale using DNAse 1 as reagent and enzymatic probe.
+ meaning: OBI:0001035
+ title: Nuclease S1 structure mapping assay
+ OBI:0001038:
+ text: OBI:0001038
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at a nucleotide resolution
+ scale using Rhutenium as reagent and chemical probe
+ meaning: OBI:0001038
+ title: Ruthenium structure mapping assay
+ OBI:0001039:
+ text: OBI:0001039
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at nucleotide resolution
+ scale using intromolecular reactivity
+ meaning: OBI:0001039
+ title: inline probing RNA structure mapping assay
+ OBI:0001145:
+ text: OBI:0001145
+ description: A 3D molecular structure determination assay in which a complex
+ of 2 or more molecular enties is characterized which provides information
+ on their binding configuration.
+ meaning: OBI:0001145
+ title: 3D structure determination of bound molecular complex assay
+ OBI:0001146:
+ text: OBI:0001146
+ description: An assay with the objective to characterize the disposition of
+ two or more material entities to form a complex.
+ meaning: OBI:0001146
+ title: binding assay
+ OBI:0001158:
+ text: OBI:0001158
+ description: An assay that determines the duration of part of the life of
+ an organism, where the initial time point is the beginning of some transitional
+ state (such as birth or when planted).
+ meaning: OBI:0001158
+ title: age determination assay
+ OBI:0001170:
+ text: OBI:0001170
+ description: An assay that determines the concentration of RNA in a sample
+ in which an RNA strand is first reverse transcribed into its DNA complement
+ (complementary DNA, or cDNA) using the enzyme reverse transcriptase, and
+ the resulting cDNA is amplified using traditional or real-time PCR.
+ meaning: OBI:0001170
+ title: reverse transcription polymerase chain reaction assay
+ OBI:0001177:
+ text: OBI:0001177
+ description: An assay that determines the sequence of an RNA molecule.
+ meaning: OBI:0001177
+ title: RNA sequencing assay
+ OBI:0001178:
+ text: OBI:0001178
+ description: An assay that tests if inducing an epitope specific immune response
+ in an organism has an effect, such as the ability to prevent, treat or exacerbate
+ diseases in the organism.
+ meaning: OBI:0001178
+ title: efficacy of epitope intervention experiment
+ OBI:0001179:
+ text: OBI:0001179
+ description: An epitope protection experiment in which the ability of the
+ epitope to protect the host from an infection is assessed.
+ meaning: OBI:0001179
+ title: epitope protection from infectious challenge experiment
+ OBI:0001183:
+ text: OBI:0001183
+ description: An epitope protection experiment in which the ability of the
+ epitope to protect the host from developing tumors is assessed.
+ meaning: OBI:0001183
+ title: epitope protection from tumor challenge experiment
+ OBI:0001184:
+ text: OBI:0001184
+ description: An efficacy of epitope intervention experiment that tests the
+ efficacy of inducing an immune epitope response to prevent disease in a
+ host.
+ meaning: OBI:0001184
+ title: epitope protection experiment
+ OBI:0001186:
+ text: OBI:0001186
+ description: An epitope protection from infectious challenge experiment in
+ which the readout is a reduction in the presence of pathogens in the host
+ compared to controls.
+ meaning: OBI:0001186
+ title: epitope protection from infectious challenge experiment based on pathogen
+ burden
+ OBI:0001187:
+ text: OBI:0001187
+ description: An assay that measures the presence or amount of an infectious
+ agent in an evaluant
+ meaning: OBI:0001187
+ title: infectious agent detection assay
+ OBI:0001188:
+ text: OBI:0001188
+ description: An efficacy of epitope intervention experiment that tests the
+ ability of inducing an epitope immune response to increase the severity
+ of an existing disease in the host.
+ meaning: OBI:0001188
+ title: epitope disease exacerbation experiment
+ OBI:0001189:
+ text: OBI:0001189
+ description: An epitope protection experiment that determines the success
+ of the epitope intervention based on increased survival of the host.
+ meaning: OBI:0001189
+ title: epitope protection experiment based on survival
+ OBI:0001190:
+ text: OBI:0001190
+ description: An epitope intervention experiment that tests the ability of
+ inducing an epitope immune response to treat an existing disease in the
+ host.
+ meaning: OBI:0001190
+ title: epitope treatment experiment
+ OBI:0001194:
+ text: OBI:0001194
+ description: An enzyme-linked immunospot assay that detects transforming growth
+ factor-beta production by T cells.
+ meaning: OBI:0001194
+ title: ELISPOT assay measuring epitope specific transforming growth factor-beta
+ production by T cells
+ OBI:0001196:
+ text: OBI:0001196
+ description: A cytometric bead array assay that detects IP-10 production by
+ T cells.
+ meaning: OBI:0001196
+ title: cytometric bead array assay measuring epitope specific IP-10 production
+ by T cells
+ OBI:0001198:
+ text: OBI:0001198
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-27 production by T cells.
+ meaning: OBI:0001198
+ title: assay measuring epitope specific interleukin-27 production by T cells
+ OBI:0001203:
+ text: OBI:0001203
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects transforming growth factor-beta production by T cells.
+ meaning: OBI:0001203
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific transforming growth factor-beta production by
+ T cells
+ OBI:0001206:
+ text: OBI:0001206
+ description: An enzyme-linked immunospot assay that detects granulocyte macrophage
+ colony stimulating factor production by T cells.
+ meaning: OBI:0001206
+ title: ELISPOT assay measuring epitope specific granulocyte macrophage colony-stimulating
+ factor production by T cells
+ OBI:0001209:
+ text: OBI:0001209
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-10 production by T cells.
+ meaning: OBI:0001209
+ title: assay measuring epitope specific interleukin-10 production by T cells
+ OBI:0001210:
+ text: OBI:0001210
+ description: A cytometric bead array assay that detects transforming growth
+ factor-beta production by T cells
+ meaning: OBI:0001210
+ title: cytometric bead array assay measuring epitope specific transforming
+ growth factor-beta production by T cells
+ OBI:0001215:
+ text: OBI:0001215
+ description: A flow cytometry assay that detects epitope specific perforin
+ release by T cells.
+ meaning: OBI:0001215
+ title: intracellular material detection assay measuring epitope specific perforin
+ release
+ OBI:0001216:
+ text: OBI:0001216
+ description: A reporter cell line analyte detection bioassay that detects
+ interleukin-2 production by T cells.
+ meaning: OBI:0001216
+ title: cell culture analyte detection bioassay measuring epitope specific
+ interleukin-2 production by T cells
+ OBI:0001217:
+ text: OBI:0001217
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-22 production by T cells.
+ meaning: OBI:0001217
+ title: assay measuring epitope specific interleukin-22 production by T cells
+ OBI:0001218:
+ text: OBI:0001218
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-8 production by T cells.
+ meaning: OBI:0001218
+ title: assay measuring epitope specific interleukin-8 production by T cells
+ OBI:0001220:
+ text: OBI:0001220
+ description: A reporter cell line analyte detection bioassay that detects
+ interleukin-10 production by T cells.
+ meaning: OBI:0001220
+ title: cell culture analyte detection bioassay measuring epitope specific
+ interleukin-10 production by T cells
+ OBI:0001221:
+ text: OBI:0001221
+ description: A ChIP-ChIP assay in which immunoprecipitated chromatin is run
+ on a SNP array to detect polymorphism specific DNA elements in the isolated
+ chromatin
+ meaning: OBI:0001221
+ title: ChIP-chip by SNP array assay
+ OBI:0001222:
+ text: OBI:0001222
+ description: An enzyme-linked immunosorbent assay that detects RANTES production
+ by T cells.
+ meaning: OBI:0001222
+ title: ELISA measuring epitope specific RANTES production by T cells
+ OBI:0001223:
+ text: OBI:0001223
+ description: A cytometric bead array assay that detects interleukin-1 beta
+ production by T cells.
+ meaning: OBI:0001223
+ title: cytometric bead array assay measuring epitope specific interleukin-1
+ beta production by T cells
+ OBI:0001227:
+ text: OBI:0001227
+ description: An enzyme-linked immunospot assay that detects interleukin-6
+ production by T cells
+ meaning: OBI:0001227
+ title: ELISPOT assay measuring epitope specific interleukin-6 production by
+ T cells
+ OBI:0001228:
+ text: OBI:0001228
+ description: A T cell epitope specific helper activity assay that detects
+ the ability of a T cell epitope to enhance an antibody response.
+ meaning: OBI:0001228
+ title: in vivo assay measuring epitope specific helper T cell enhancement
+ of a B cell mediated immune response
+ OBI:0001229:
+ text: OBI:0001229
+ description: A surface plasmon resonance binding assay that measures the dissociation
+ constant [KD] of an epitope:MHC complex binding with a T cell receptor.
+ meaning: OBI:0001229
+ title: plasmon resonance assay measuring the dissociation constant [KD] of
+ a T cell epitope:MHC:TCR complex
+ OBI:0001230:
+ text: OBI:0001230
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-5 production by T cells.
+ meaning: OBI:0001230
+ title: assay measuring epitope specific interleukin-5 production by T cells
+ OBI:0001231:
+ text: OBI:0001231
+ description: An enzyme-linked immunosorbent assay that detects transforming
+ growth factor-beta production by T cells.
+ meaning: OBI:0001231
+ title: ELISA measuring epitope specific transforming growth factor-beta production
+ by T cells
+ OBI:0001232:
+ text: OBI:0001232
+ description: A T cell epitope specific cytokine production assay that detects
+ RANTES production by T cells.
+ meaning: OBI:0001232
+ title: assay measuring epitope specific RANTES production by T cells
+ OBI:0001233:
+ text: OBI:0001233
+ description: A T cell epitope specific cytokine production assay that detects
+ granulocyte macrophage colony stimulating factor production by T cells.
+ meaning: OBI:0001233
+ title: assay measuring epitope specific granulocyte macrophage colony stimulating
+ factor production by T cells
+ OBI:0001235:
+ text: OBI:0001235
+ description: A transcription profiling by array assay that uses a tiling path
+ array.
+ meaning: OBI:0001235
+ title: transcription profiling by tiling array assay
+ OBI:0001236:
+ text: OBI:0001236
+ description: An enzyme-linked immunosorbent assay that detects interleukin-22
+ production by T cells.
+ meaning: OBI:0001236
+ title: ELISA measuring epitope specific interleukin-22 production by T cells
+ OBI:0001237:
+ text: OBI:0001237
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-21 production by T cells.
+ meaning: OBI:0001237
+ title: assay measuring epitope specific interleukin-21 production by T cells
+ OBI:0001238:
+ text: OBI:0001238
+ description: An enzyme-linked immunosorbent assay that detects interleukin-9
+ production by T cells.
+ meaning: OBI:0001238
+ title: ELISA measuring epitope specific interleukin-9 production by T cells
+ OBI:0001240:
+ text: OBI:0001240
+ description: A flow cytometry assay that detects interleukin-6 production
+ by T cells.
+ meaning: OBI:0001240
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-6
+ production by T cells
+ OBI:0001241:
+ text: OBI:0001241
+ description: A reporter cell line analyte detection bioassay that detects
+ interleukin-4 production by T cells.
+ meaning: OBI:0001241
+ title: cell culture analyte detection bioassay measuring epitope specific
+ interleukin-4 production by T cells
+ OBI:0001242:
+ text: OBI:0001242
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects tumor necrosis factor alpha production by T cells.
+ meaning: OBI:0001242
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific tumor necrosis factor alpha production by T cells
+ OBI:0001243:
+ text: OBI:0001243
+ description: A cytometric bead array assay that detects monocyte chemotactic
+ protein-1 production by T cells.
+ meaning: OBI:0001243
+ title: cytometric bead array assay measuring epitope specific monocyte chemotactic
+ protein-1 production by T cells
+ OBI:0001244:
+ text: OBI:0001244
+ description: An enzyme-linked immunosorbent assay that detects interleukin-23
+ production by T cells.
+ meaning: OBI:0001244
+ title: ELISA measuring epitope specific interleukin-23 production by T cells
+ OBI:0001245:
+ text: OBI:0001245
+ description: A detection of specific nucleic acids with complementary probes
+ assay that detects epitope specific perforin release by T cells.
+ meaning: OBI:0001245
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific perforin release
+ OBI:0001246:
+ text: OBI:0001246
+ description: An enzyme-linked immunosorbent assay that detects tumor necrosis
+ factor superfamily cytokine production by T cells.
+ meaning: OBI:0001246
+ title: ELISA measuring epitope specific tumor necrosis factor superfamily
+ cytokine production by T cells
+ OBI:0001247:
+ text: OBI:0001247
+ description: A genotyping assay that uses a high througput sequencer
+ meaning: OBI:0001247
+ title: genotyping by high throughput sequencing assay
+ OBI:0001248:
+ text: OBI:0001248
+ description: An assay in which chromatin is immunoprecipitated and subsequently
+ analyzed using a DNA microarray to identify which parts of DNA are part
+ of the isolated chromatin
+ meaning: OBI:0001248
+ title: ChIP-chip assay
+ OBI:0001251:
+ text: OBI:0001251
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-13 production by T cells.
+ meaning: OBI:0001251
+ title: assay measuring epitope specific interleukin-13 production by T cells
+ OBI:0001253:
+ text: OBI:0001253
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-9 production by T cells.
+ meaning: OBI:0001253
+ title: assay measuring interleukin-9 production by T cells
+ OBI:0001255:
+ text: OBI:0001255
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-5 production by T cells.
+ meaning: OBI:0001255
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-5 production by T cells
+ OBI:0001260:
+ text: OBI:0001260
+ description: An enzyme-linked immunosorbent assay that detects interleukin-3
+ production by T cells.
+ meaning: OBI:0001260
+ title: ELISA measuring epitope specific interleukin-3 production by T cells
+ OBI:0001261:
+ text: OBI:0001261
+ description: An enzyme-linked immunosorbent assay that detects interleukin-1
+ alpha production by T cells.
+ meaning: OBI:0001261
+ title: ELISA measuring epitope specific interleukin-1 alpha production by
+ T cells
+ OBI:0001263:
+ text: OBI:0001263
+ description: A T cell epitope specific helper activity assay that detects
+ the ability of a T cell epitope to enhance a T cell response.
+ meaning: OBI:0001263
+ title: in vivo assay measuring epitope specific helper T cell enhancement
+ of a T cell mediated immune response
+ OBI:0001264:
+ text: OBI:0001264
+ description: A T cell epitope specific cytokine production assay that detects
+ transforming growth factor-beta production by T cells.
+ meaning: OBI:0001264
+ title: assay measuring epitope specific transforming growth factor-beta production
+ by T cells
+ OBI:0001266:
+ text: OBI:0001266
+ description: A DNA methylation profiling assay in which the methylation state
+ of DNA is determined and can be compared between samples using sequencing
+ based technology
+ meaning: OBI:0001266
+ title: DNA methylation profiling by high throughput sequencing assay
+ OBI:0001268:
+ text: OBI:0001268
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-12 production by T cells.
+ meaning: OBI:0001268
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-12 production by T cells
+ OBI:0001269:
+ text: OBI:0001269
+ description: A T cell epitope dependent biological activity assay that detects
+ cytotoxic T cell degranulation.
+ meaning: OBI:0001269
+ title: assay measuring epitope specific cytotoxic T cell degranulation
+ OBI:0001270:
+ text: OBI:0001270
+ description: A reporter cell line analyte detection bioassay that detects
+ transforming growth factor-beta production by T cells.
+ meaning: OBI:0001270
+ title: cell culture analyte detection bioassay measuring epitope specific
+ transforming growth factor-beta production by T cells
+ OBI:0001271:
+ text: OBI:0001271
+ description: A type of transcription profiling assay where transcripts are
+ extracted from a sample, usually (but not always) transformed into cDNA,
+ and then sequenced. Sequence reads are generally mapped to a reference and
+ quantified to establish levels of gene transcription.
+ meaning: OBI:0001271
+ title: transcription profiling by RNA sequencing assay
+ OBI:0001272:
+ text: OBI:0001272
+ description: An enzyme-linked immunospot assay that detects tumor necrosis
+ factor superfamily cytokine production by T cells.
+ meaning: OBI:0001272
+ title: ELISPOT assay measuring epitope specific tumor necrosis factor superfamily
+ cytokine production by T cells
+ OBI:0001273:
+ text: OBI:0001273
+ description: A reporter cell line analyte detection bioassay that detects
+ interleukin-5 production by T cells.
+ meaning: OBI:0001273
+ title: cell culture analyte detection bioassay measuring epitope specific
+ interleukin-5 production by T cells
+ OBI:0001274:
+ text: OBI:0001274
+ description: A genotyping assay that uses an array
+ meaning: OBI:0001274
+ title: genotyping by array assay
+ OBI:0001276:
+ text: OBI:0001276
+ description: A T cell epitope specific cytokine production assay that detects
+ production of chemokine (C-C motif) ligand 1 by T cells.
+ meaning: OBI:0001276
+ title: assay measuring epitope specific chemokine (C-C motif) ligand 1 production
+ by T cells
+ OBI:0001277:
+ text: OBI:0001277
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-2 production by T cells.
+ meaning: OBI:0001277
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-2 production by T cells
+ OBI:0001279:
+ text: OBI:0001279
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-22 production by T cells.
+ meaning: OBI:0001279
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-22 production by T cells
+ OBI:0001280:
+ text: OBI:0001280
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-16 production by T cells.
+ meaning: OBI:0001280
+ title: assay measuring epitope specific interleukin-16 production by T cells
+ OBI:0001281:
+ text: OBI:0001281
+ description: An enzyme-linked immunosorbent assay that detects IP-10 production
+ by T cells.
+ meaning: OBI:0001281
+ title: ELISA measuring epitope specific IP-10 production by T cells
+ OBI:0001282:
+ text: OBI:0001282
+ description: An assay in which surface-bound, translationally competent ribosome
+ complexes are used to generate a translation profile for mRNA, which mRNA
+ may be a single molecular species, or a combination of species, including
+ complex mixtures such as those found in the set of mRNAs isolated from a
+ cell or tissue. One or more components of the surface-bound ribosome complex
+ may be labeled at specific positions to permit analysis of multiple or single
+ molecules for determination of ribosomal conformational changes and translation
+ kinetics. Translation profiles are used as the basis for comparison of an
+ mRNA or set of mRNA species. The translation profile can be used to determine
+ such characteristics as kinetics of initiation, kinetic of elongation, identity
+ of the polypeptide product, and the like. Analysis of translation profiles
+ may be used to determine differential gene expression, optimization of mRNA
+ sequences for expression, screening drug candidates for an effect on translation.
+ meaning: OBI:0001282
+ title: translation profiling assay
+ OBI:0001283:
+ text: OBI:0001283
+ description: An enzyme-linked immunosorbent assay that detects interleukin-15
+ production by T cells.
+ meaning: OBI:0001283
+ title: ELISA measuring epitope specific interleukin-15 production by T cells
+ OBI:0001284:
+ text: OBI:0001284
+ description: A cytometric bead array assay that detects interleukin-12 production
+ by T cells.
+ meaning: OBI:0001284
+ title: cytometric bead array assay measuring epitope specific interleukin-12
+ production by T cells
+ OBI:0001288:
+ text: OBI:0001288
+ description: An enzyme-linked immunosorbent assay that detects lymphotoxin
+ A production by T cells.
+ meaning: OBI:0001288
+ title: ELISA measuring epitope specific lymphotoxin A production by T cells
+ OBI:0001289:
+ text: OBI:0001289
+ description: A cytometric bead array assay that detects interleukin-5 production
+ by T cells.
+ meaning: OBI:0001289
+ title: cytometric bead array assay measuring epitope specific interleukin-5
+ production by T cells
+ OBI:0001291:
+ text: OBI:0001291
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-17 production by T cells.
+ meaning: OBI:0001291
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-17 production by T cells
+ OBI:0001292:
+ text: OBI:0001292
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-15 production by T cells.
+ meaning: OBI:0001292
+ title: assay measuring epitope specific interleukin-15 production by T cells
+ OBI:0001295:
+ text: OBI:0001295
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-17 production by T cells.
+ meaning: OBI:0001295
+ title: assay measuring epitope specific interleukin-17 production by T cells
+ OBI:0001296:
+ text: OBI:0001296
+ description: A cytometric bead array assay that detects interleukin-17 production
+ by T cells.
+ meaning: OBI:0001296
+ title: cytometric bead array assay measuring epitope specific interleukin-17
+ production by T cells
+ OBI:0001297:
+ text: OBI:0001297
+ description: A cytometric bead array assay that detects interleukin-10 production
+ by T cells.
+ meaning: OBI:0001297
+ title: cytometric bead array assay measuring epitope specific interleukin-10
+ production by T cells
+ OBI:0001298:
+ text: OBI:0001298
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-21 production by T cells.
+ meaning: OBI:0001298
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-21 production by T cells
+ OBI:0001299:
+ text: OBI:0001299
+ description: A flow cytometry assay that detects interleukin-5 production
+ by T cells.
+ meaning: OBI:0001299
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-5
+ production by T cells
+ OBI:0001300:
+ text: OBI:0001300
+ description: A cytometric bead array assay that detects interleukin-2 production
+ by T cells.
+ meaning: OBI:0001300
+ title: cytometric bead array assay measuring epitope specific interleukin-2
+ production by T cells
+ OBI:0001301:
+ text: OBI:0001301
+ description: A reporter cell line analyte detection bioassay that detects
+ interleukin-16 production by T cells.
+ meaning: OBI:0001301
+ title: cell culture analyte detection bioassay measuring epitope specific
+ interleukin-16 production by T cells
+ OBI:0001302:
+ text: OBI:0001302
+ description: An enzyme-linked immunosorbent assay that detects macrophage
+ inflammatory protein-1 alpha production by T cells.
+ meaning: OBI:0001302
+ title: ELISA measuring epitope specific macrophage inflammatory protein-1
+ alpha production by T cells
+ OBI:0001303:
+ text: OBI:0001303
+ description: A flow cytometry assay that detects granulocyte macrophage colony
+ stimulating factor production by T cells.
+ meaning: OBI:0001303
+ title: intracellular cytokine staining assay measuring epitope specific granulocyte
+ macrophage colony-stimulating factor production by T cells
+ OBI:0001304:
+ text: OBI:0001304
+ description: An assay in which double stranded RNA is synthesized with a sequence
+ complementary to a gene(s) of interest and introduced into a cell or organism,
+ where it is recognized as exogenous genetic material and activates the RNAi
+ pathway resulting in knockdown of the transcripts and providing a means
+ to study downstream changes in gene expression.
+ meaning: OBI:0001304
+ title: RNAi profiling by array assay
+ OBI:0001308:
+ text: OBI:0001308
+ description: A T cell epitope specific cytokine production assay that detects
+ IP-10 production by T cells.
+ meaning: OBI:0001308
+ title: assay measuring epitope specific IP-10 production by T cells
+ OBI:0001309:
+ text: OBI:0001309
+ description: A flow cytometry assay that detects interleukin-13 production
+ by T cells.
+ meaning: OBI:0001309
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-13
+ production by T cells
+ OBI:0001311:
+ text: OBI:0001311
+ description: A X-ray crystallography 3D molecular structure determination
+ assay that characterizes the 3-dimensional molecular structure of a T cell
+ epitope:MHC:TCR complex.
+ meaning: OBI:0001311
+ title: X-ray crystallography assay determining the 3D structure of a T cell
+ epitope:MHC:TCR complex
+ OBI:0001315:
+ text: OBI:0001315
+ description: An enzyme-linked immunosorbent assay that detects chemokine (C-C
+ motif) ligand 1 production by T cells.
+ meaning: OBI:0001315
+ title: ELISA measuring epitope specific chemokine (C-C motif) ligand 1 production
+ by T cells
+ OBI:0001317:
+ text: OBI:0001317
+ description: A flow cytometry assay that measures the cell-cell binding of
+ an epitope:MHC complex binding with a T cell receptor.
+ meaning: OBI:0001317
+ title: flow cytometry assay measuring cell-cell binding of a T cell epitope:MHC:TCR
+ complex
+ OBI:0001318:
+ text: OBI:0001318
+ description: An assay that detects proteins in a sample (quantified or otherwise
+ analyzed), e.g. antibody profiling using an array based technology.
+ meaning: OBI:0001318
+ title: proteomic profiling by array assay
+ OBI:0001319:
+ text: OBI:0001319
+ description: A reporter cell line analyte detection bioassay that detects
+ interferon-gamma production by T cells.
+ meaning: OBI:0001319
+ title: cell culture analyte detection bioassay measuring epitope specific
+ interferon-gamma production by T cells
+ OBI:0001322:
+ text: OBI:0001322
+ description: An enzyme-linked immunospot assay that detects epitope specific
+ granzyme B release by T cells.
+ meaning: OBI:0001322
+ title: ELISPOT assay measuring epitope specific granzyme B release by T cells
+ OBI:0001324:
+ text: OBI:0001324
+ description: An efficacy of T cell epitope intervention experiment that uses
+ a tolerance induction intervention experiment.
+ meaning: OBI:0001324
+ title: in vivo assay measuring T cell epitope specific tolerance induction
+ OBI:0001325:
+ text: OBI:0001325
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects RANTES production by T cells.
+ meaning: OBI:0001325
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific RANTES production by T cells
+ OBI:0001326:
+ text: OBI:0001326
+ description: A cytometric bead array assay that detects interleukin-4 production
+ by T cells
+ meaning: OBI:0001326
+ title: cytometric bead array assay measuring epitope specific interleukin-4
+ production by T cells
+ OBI:0001327:
+ text: OBI:0001327
+ description: A T cell epitope specific cytokine production assay that detects
+ lymphotoxin A production by T cells.
+ meaning: OBI:0001327
+ title: assay measuring epitope specific lymphotoxin A production by T cells
+ OBI:0001330:
+ text: OBI:0001330
+ description: An enzyme-linked immunosorbent assay that detects chemokine (C-X-C
+ motif) ligand 9 production by T cells.
+ meaning: OBI:0001330
+ title: ELISA measuring epitope specific chemokine (C-X-C motif) ligand 9 production
+ by T cells
+ OBI:0001332:
+ text: OBI:0001332
+ description: A DNA methylation profiling assay in which the methylation state
+ of DNA is determined and can be compared between samples using array technology
+ meaning: OBI:0001332
+ title: DNA methylation profiling by array assay
+ OBI:0001333:
+ text: OBI:0001333
+ description: A T cell epitope specific cytokine production assay that detects
+ macrophage inflammatory protein-1 alpha production by T cells.
+ meaning: OBI:0001333
+ title: assay measuring epitope specific macrophage inflammatory protein-1
+ alpha production by T cells
+ OBI:0001335:
+ text: OBI:0001335
+ description: An assay that analyses the microRNA component of the transcriptome
+ using a microRNA array.
+ meaning: OBI:0001335
+ title: microRNA profiling by array assay
+ OBI:0001339:
+ text: OBI:0001339
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-4 production by T cells.
+ meaning: OBI:0001339
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-4 production by T cells
+ OBI:0001341:
+ text: OBI:0001341
+ description: A reporter cell line analyte detection bioassay that detects
+ granulocyte macrophage colony stimulating factor production by T cells.
+ meaning: OBI:0001341
+ title: cell culture analyte detection bioassay measuring epitope specific
+ granulocyte macrophage colony-stimulating factor production by T cells
+ OBI:0001342:
+ text: OBI:0001342
+ description: A flow cytometry assay that detects interleukin-21 production
+ by T cells.
+ meaning: OBI:0001342
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-21
+ production by T cells
+ OBI:0001343:
+ text: OBI:0001343
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects monocyte chemotactic protein-1 production by T cells.
+ meaning: OBI:0001343
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific monocyte chemotactic protein-1 production by
+ T cells
+ OBI:0001344:
+ text: OBI:0001344
+ description: An enzyme-linked immunosorbent assay that detects monocyte chemotactic
+ protein-1 production by T cells.
+ meaning: OBI:0001344
+ title: ELISA measuring epitope specific monocyte chemotactic protein-1 production
+ by T cells
+ OBI:0001345:
+ text: OBI:0001345
+ description: A T cell epitope specific cytokine production assay that detects
+ chemokine (C-C motif) ligand 4 production by T cells.
+ meaning: OBI:0001345
+ title: assay measuring epitope specific chemokine (C-C motif) ligand 4 production
+ by T cells
+ OBI:0001346:
+ text: OBI:0001346
+ description: An enzyme-linked immunosorbent assay that detects interleukin-21
+ production by T cells.
+ meaning: OBI:0001346
+ title: ELISA measuring epitope specific interleukin-21 production by T cells
+ OBI:0001348:
+ text: OBI:0001348
+ description: An efficacy of T cell epitope intervention experiment that detects
+ epitope specific type IV hypersensitivity.
+ meaning: OBI:0001348
+ title: in vivo skin test assay measuring T cell epitope specific type IV hypersensitivity
+ OBI:0001349:
+ text: OBI:0001349
+ description: A cytometric bead array assay that detects interleukin-13 production
+ by T cells.
+ meaning: OBI:0001349
+ title: cytometric bead array assay measuring epitope specific interleukin-13
+ production by T cells
+ OBI:0001350:
+ text: OBI:0001350
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interferon-gamma production by T cells.
+ meaning: OBI:0001350
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interferon-gamma production by T cells
+ OBI:0001353:
+ text: OBI:0001353
+ description: A cytometric bead array assay that detects tumor necrosis factor
+ alpha production by T cells.
+ meaning: OBI:0001353
+ title: cytometric bead array assay measuring epitope specific tumor necrosis
+ factor alpha production by T cells
+ OBI:0001354:
+ text: OBI:0001354
+ description: An enzyme-linked immunospot assay that detects interleukin-17
+ production by T cells.
+ meaning: OBI:0001354
+ title: ELISPOT assay measuring epitope specific interleukin-17 production
+ by T cells
+ OBI:0001356:
+ text: OBI:0001356
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interferon-beta production by T cells.
+ meaning: OBI:0001356
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interferon-beta production by T cells
+ OBI:0001357:
+ text: OBI:0001357
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects granulocyte macrophage colony stimulating factor production
+ by T cells.
+ meaning: OBI:0001357
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific granulocyte macrophage colony-stimulating factor
+ production by T cells
+ OBI:0001359:
+ text: OBI:0001359
+ description: An enzyme-linked immunosorbent assay that detects interleukin-8
+ production by T cells.
+ meaning: OBI:0001359
+ title: ELISA measuring epitope specific interleukin-8 production by T cells
+ OBI:0001360:
+ text: OBI:0001360
+ description: A cytometric bead array assay that detects interleukin-6 production
+ by T cells.
+ meaning: OBI:0001360
+ title: cytometric bead array assay measuring epitope specific interleukin-6
+ production by T cells
+ OBI:0001361:
+ text: OBI:0001361
+ description: A transcription profiling assay that uses reverse transcription
+ PCR (RT-PCR).
+ meaning: OBI:0001361
+ title: transcription profiling by RT-PCR assay
+ OBI:0001363:
+ text: OBI:0001363
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-23 production by T cells.
+ meaning: OBI:0001363
+ title: assay measuring epitope specific interleukin-23 production by T cells
+ OBI:0001367:
+ text: OBI:0001367
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-10 production by T cells.
+ meaning: OBI:0001367
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-10 production by T cells
+ OBI:0001368:
+ text: OBI:0001368
+ description: A cytometric bead array assay that detects tumor necrosis factor
+ superfamily cytokine production by T cells.
+ meaning: OBI:0001368
+ title: cytometric bead array assay measuring epitope specific tumor necrosis
+ factor superfamily cytokine production by T cells
+ OBI:0001370:
+ text: OBI:0001370
+ description: A flow cytometry assay that detects chemokine (C-C motif) ligand
+ 4 production by T cells.
+ meaning: OBI:0001370
+ title: intracellular cytokine staining assay measuring epitope specific chemokine
+ (C-C motif) ligand 4 production by T cells
+ OBI:0001376:
+ text: OBI:0001376
+ description: A flow cytometry assay that detects interleukin-3 production
+ by T cells.
+ meaning: OBI:0001376
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-3
+ production by T cells
+ OBI:0001378:
+ text: OBI:0001378
+ description: An enzyme-linked immunosorbent assay that detects chemokine (C-C
+ motif) ligand 4 production by T cells.
+ meaning: OBI:0001378
+ title: ELISA measuring epitope specific chemokine (C-C motif) ligand 4 production
+ by T cells
+ OBI:0001379:
+ text: OBI:0001379
+ description: A cytometric bead array assay that detects interferon-gamma production
+ by T cells.
+ meaning: OBI:0001379
+ title: cytometric bead array assay measuring epitope specific interferon-gamma
+ production by T cells
+ OBI:0001380:
+ text: OBI:0001380
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-18 production by T cells.
+ meaning: OBI:0001380
+ title: assay measuring epitope specific interleukin-18 production by T cells
+ OBI:0001382:
+ text: OBI:0001382
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-27 production by T cells.
+ meaning: OBI:0001382
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-27 production by T cells
+ OBI:0001383:
+ text: OBI:0001383
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects IP-10 production by T cells.
+ meaning: OBI:0001383
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific IP-10 production by T cells
+ OBI:0001384:
+ text: OBI:0001384
+ description: A reporter cell line analyte detection bioassay that detects
+ interleukin-3 production by T cells.
+ meaning: OBI:0001384
+ title: cell culture analyte detection bioassay measuring epitope specific
+ interleukin-3 production by T cells
+ OBI:0001385:
+ text: OBI:0001385
+ description: A flow cytometry assay that detects tumor necrosis factor superfamily
+ cytokine production by T cells.
+ meaning: OBI:0001385
+ title: intracellular cytokine staining assay measuring epitope specific tumor
+ necrosis factor superfamily cytokine production by T cells
+ OBI:0001388:
+ text: OBI:0001388
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-1 alpha production by T cells.
+ meaning: OBI:0001388
+ title: assay measuring epitope specific interleukin-1 alpha production by
+ T cells
+ OBI:0001389:
+ text: OBI:0001389
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-6 production by T cells.
+ meaning: OBI:0001389
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-6 production by T cells
+ OBI:0001390:
+ text: OBI:0001390
+ description: A T cell epitope specific cytokine production assay that detects
+ interferon-beta production by T cells.
+ meaning: OBI:0001390
+ title: assay measuring epitope specific interferon-beta production by T cells
+ OBI:0001391:
+ text: OBI:0001391
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-12 production by T cells.
+ meaning: OBI:0001391
+ title: assay measuring epitope specific interleukin-12 production by T cells
+ OBI:0001392:
+ text: OBI:0001392
+ description: An in vivo cell killing assay that measures the killing of antigen
+ presenting cells (APC) by T cells whose TCR recognizes an epitope presented
+ by the APC.
+ meaning: OBI:0001392
+ title: in vivo assay measuring epitope specific T cell killing
+ OBI:0001393:
+ text: OBI:0001393
+ description: An assay that measures changes in DNA sequence copy number using
+ a microarray. For example the analysis of LOH in tumor cells vs a non diseased
+ sample or the comparison of clinical isolated of disease causing bacteria.
+ meaning: OBI:0001393
+ title: comparative genomic hybridization by array assay
+ OBI:0001395:
+ text: OBI:0001395
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-23 production by T cells.
+ meaning: OBI:0001395
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-23 production by T cells
+ OBI:0001397:
+ text: OBI:0001397
+ description: A cytometric bead array assay that detects granulocyte colony
+ stimulating factor production by T cells.
+ meaning: OBI:0001397
+ title: cytometric bead array assay measuring epitope specific granulocyte
+ colony stimulating factor production by T cells
+ OBI:0001400:
+ text: OBI:0001400
+ description: A T cell epitope specific cytokine production assay that detects
+ tumor necrosis factor superfamily cytokine production by T cells.
+ meaning: OBI:0001400
+ title: assay measuring epitope specific tumor necrosis factor superfamily
+ cytokine production by T cells
+ OBI:0001402:
+ text: OBI:0001402
+ description: A promoter activity detection by reporter gene assay that detects
+ interleukin-2 production by T cells.
+ meaning: OBI:0001402
+ title: promoter activity detection by reporter gene assay measuring epitope
+ specific interleukin-2 production by T cells
+ OBI:0001405:
+ text: OBI:0001405
+ description: A cytometric bead array assay that detects macrophage inflammatory
+ protein-1 alpha production by T cells.
+ meaning: OBI:0001405
+ title: cytometric bead array assay measuring epitope specific macrophage inflammatory
+ protein-1 alpha production by T cells
+ OBI:0001406:
+ text: OBI:0001406
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-3 production by T cells.
+ meaning: OBI:0001406
+ title: assay measuring epitope specific interleukin-3 production by T cells
+ OBI:0001407:
+ text: OBI:0001407
+ description: A T cell epitope dependent biological activity assay that detects
+ T cell activation.
+ meaning: OBI:0001407
+ title: assay measuring epitope specific T cell activation
+ OBI:0001412:
+ text: OBI:0001412
+ description: A cytometric bead array assay that detects RANTES production
+ by T cells.
+ meaning: OBI:0001412
+ title: cytometric bead array assay measuring epitope specific RANTES production
+ by T cells
+ OBI:0001413:
+ text: OBI:0001413
+ description: A reporter cell line analyte detection bioassay that detects
+ interleukin-6 production by T cells.
+ meaning: OBI:0001413
+ title: cell culture analyte detection bioassay measuring epitope specific
+ interleukin-6 production by T cells
+ OBI:0001414:
+ text: OBI:0001414
+ description: A T cell epitope specific cytokine production assay that detects
+ interferon-gamma production by T cells.
+ meaning: OBI:0001414
+ title: assay measuring epitope specific interferon-gamma production by T cells
+ OBI:0001416:
+ text: OBI:0001416
+ description: An assay of epitope specific tumor necrosis factor alpha production
+ by T cells that detects tumor necrosis factor production.
+ meaning: OBI:0001416
+ title: assay measuring epitope specific tumor necrosis factor alpha production
+ by T cells
+ OBI:0001419:
+ text: OBI:0001419
+ description: A ChIP-ChIP assay in which immunoprecipitated chromatin is run
+ on a tiling array that covers stretches of DNA to to detect which elements
+ in those stretches are present in the isolated chromatin
+ meaning: OBI:0001419
+ title: ChIP-chip by tiling array assay
+ OBI:0001423:
+ text: OBI:0001423
+ description: A flow cytometry assay that detects epitope specific granzyme
+ B release by T cells
+ meaning: OBI:0001423
+ title: intracellular material detection measuring epitope specific granzyme
+ B release by T cells
+ OBI:0001433:
+ text: OBI:0001433
+ description: A radio immuno assay that detects interferon-gamma production
+ by T cells.
+ meaning: OBI:0001433
+ title: radio immuno assay measuring epitope specific interferon-gamma production
+ by T cells
+ OBI:0001436:
+ text: OBI:0001436
+ description: A T cell epitope specific cytotoxic T cell degranulation assay
+ that detects granzyme B release by T cells.
+ meaning: OBI:0001436
+ title: assay measuring epitope specific granzyme B release by T cells
+ OBI:0001437:
+ text: OBI:0001437
+ description: A flow cytometry assay that detects chemokine (C-X-C motif) ligand
+ 9 production by T cells.
+ meaning: OBI:0001437
+ title: intracellular cytokine staining assay measuring epitope specific chemokine
+ (C-X-C motif) ligand 9 production by T cells
+ OBI:0001438:
+ text: OBI:0001438
+ description: An enzyme-linked immunosorbent assay that detects macrophage
+ inflammatory protein-1 gamma production by T cells.
+ meaning: OBI:0001438
+ title: ELISA measuring epitope specific macrophage inflammatory protein-1
+ gamma production by T cells
+ OBI:0001445:
+ text: OBI:0001445
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-2 production by T cells.
+ meaning: OBI:0001445
+ title: assay measuring epitope specific interleukin-2 production by T cells
+ OBI:0001449:
+ text: OBI:0001449
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-1 beta production by T cells.
+ meaning: OBI:0001449
+ title: assay measuring epitope specific interleukin-1 beta production by T
+ cells
+ OBI:0001450:
+ text: OBI:0001450
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-4 production by T cells.
+ meaning: OBI:0001450
+ title: assay measuring epitope specific interleukin-4 production by T cells
+ OBI:0001451:
+ text: OBI:0001451
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-6 production by T cells.
+ meaning: OBI:0001451
+ title: assay measuring epitope specific interleukin-6 production by T cells
+ OBI:0001452:
+ text: OBI:0001452
+ description: A reporter cell line analyte detection bioassay that detects
+ tumor necrosis factor alpha production by T cells.
+ meaning: OBI:0001452
+ title: cell culture analyte detection bioassay measuring epitope specific
+ tumor necrosis factor alpha production by T cells
+ OBI:0001453:
+ text: OBI:0001453
+ description: A flow cytometry assay that detects lymphotoxin A production
+ by T cells.
+ meaning: OBI:0001453
+ title: intracellular cytokine staining assay measuring epitope specific lymphotoxin
+ A production by T cells
+ OBI:0001455:
+ text: OBI:0001455
+ description: An enzyme-linked immunospot assay that detects interleukin-5
+ production by T cells.
+ meaning: OBI:0001455
+ title: ELISPOT assay measuring epitope specific interleukin-5 production by
+ T cells
+ OBI:0001456:
+ text: OBI:0001456
+ description: A T cell epitope specific cytokine production assay that detects
+ macrophage inflammatory protein-1 gamma production by T cells.
+ meaning: OBI:0001456
+ title: assay measuring epitope specific macrophage inflammatory protein-1
+ gamma production by T cells
+ OBI:0001457:
+ text: OBI:0001457
+ description: A cytometric bead array assay that detects interleukin-8 production
+ by T cells.
+ meaning: OBI:0001457
+ title: cytometric bead array assay measuring epitope specific interleukin-8
+ production by T cells
+ OBI:0001459:
+ text: OBI:0001459
+ description: A T cell epitope specific cytokine production assay that detects
+ chemokine (C-X-C motif) ligand 9 production by T cells.
+ meaning: OBI:0001459
+ title: assay measuring epitope specific chemokine (C-X-C motif) ligand 9 production
+ by T cells
+ OBI:0001461:
+ text: OBI:0001461
+ description: An enzyme-linked immunosorbent assay that detects epitope specific
+ granzyme B release by T cells.
+ meaning: OBI:0001461
+ title: ELISA measuring epitope specific granzyme B release by T cells
+ OBI:0001463:
+ text: OBI:0001463
+ description: A transcription profiling assay that uses array technology.
+ meaning: OBI:0001463
+ title: transcription profiling by array assay
+ OBI:0001465:
+ text: OBI:0001465
+ description: A T cell epitope specific cytokine production assay that detects
+ monocyte chemotactic protein-1 production by T cells.
+ meaning: OBI:0001465
+ title: assay measuring epitope specific monocyte chemotactic protein-1 production
+ by T cells
+ OBI:0001466:
+ text: OBI:0001466
+ description: A flow cytometry assay that detects interleukin-12 production
+ by T cells.
+ meaning: OBI:0001466
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-12
+ production by T cells
+ OBI:0001467:
+ text: OBI:0001467
+ description: An efficacy of T cell epitope intervention experiment that uses
+ a disease exacerbation in vivo intervention experiment.
+ meaning: OBI:0001467
+ title: in vivo assay measuring T cell epitope specific disease exacerbation
+ OBI:0001469:
+ text: OBI:0001469
+ description: A MHC ligand processing and presentation assay in which the presence
+ of a specific ligand in an eluate is detected using the response of T cells
+ that are known to be monospecific for that ligand as a readout.
+ meaning: OBI:0001469
+ title: monospecific T cell recognition assay measuring MHC ligand processing
+ and presentation
+ OBI:0001473:
+ text: OBI:0001473
+ description: An in vivo assay measuring T cell epitope specific protection
+ from tumor challenge using tumor burden.
+ meaning: OBI:0001473
+ title: in vivo assay measuring T cell epitope specific protection after tumor
+ burden challenge
+ OBI:0001475:
+ text: OBI:0001475
+ description: An in vivo assay measuring T cell epitope specific protection
+ from pathogen challenge using pathogen burden.
+ meaning: OBI:0001475
+ title: in vivo assay measuring T cell epitope specific protection from infectious
+ challenge based on pathogen burden
+ OBI:0001476:
+ text: OBI:0001476
+ description: A binding assay in which a collection of phages expressing a
+ library of different peptides or protein fragnments is used to infect cells,
+ followed by screening for cells that bind a protein of interest, and identifiying
+ the sequence of infecting phages to determine a suitable binding partner.
+ meaning: OBI:0001476
+ title: phage display binding assay
+ OBI:0001478:
+ text: OBI:0001478
+ description: A MHC ligand processing and presentation assay that uses a mass
+ spectrometry assay to identify eluted ligands
+ meaning: OBI:0001478
+ title: mass spectrometry assay measuring MHC ligand processing and presentation
+ OBI:0001482:
+ text: OBI:0001482
+ description: A flow cytometry assay that detects transforming growth factor-beta
+ production by T cells.
+ meaning: OBI:0001482
+ title: intracellular cytokine staining assay measuring epitope specific transforming
+ growth factor-beta production by T cells
+ OBI:0001484:
+ text: OBI:0001484
+ description: A T cell epitope dependent biological activity determination
+ assay that uses an in vivo intervention experiment.
+ meaning: OBI:0001484
+ title: assay measuring T cell epitope specific in vivo activity
+ OBI:0001488:
+ text: OBI:0001488
+ description: An efficacy of epitope intervention experiment that tests the
+ ability of the intervention to decrease an existing immune response
+ meaning: OBI:0001488
+ title: epitope tolerance induction experiment
+ OBI:0001489:
+ text: OBI:0001489
+ description: A mass spectrometry of MHC ligands assay that identifies eluted
+ ligands from cell bound MHC.
+ meaning: OBI:0001489
+ title: mass spectrometry assay measuring MHC ligand processing and presentation
+ of MHC ligands eluted from cellular MHC
+ OBI:0001490:
+ text: OBI:0001490
+ description: A cytometric bead array assay that detects granulocyte macrophage
+ colony stimulating factor production by T cells.
+ meaning: OBI:0001490
+ title: cytometric bead array measuring epitope specific granulocyte macrophage
+ colony-stimulating factor production by T cells
+ OBI:0001491:
+ text: OBI:0001491
+ description: A binding assay that uses radioactivity detection as an indicator
+ of binding.
+ meaning: OBI:0001491
+ title: binding assay using radioactivity detection
+ OBI:0001492:
+ text: OBI:0001492
+ description: An in vivo assay measuring T cell epitope specific protection
+ from other challenge using survival.
+ meaning: OBI:0001492
+ title: in vivo assay measuring T cell epitope specific protection based on
+ survival
+ OBI:0001493:
+ text: OBI:0001493
+ description: A cell bound MHC binding assay that uses a T cell epitope recognition
+ assay.
+ meaning: OBI:0001493
+ title: cell bound MHC competitive binding assay of a MHC:ligand complex using
+ T cell epitope recognition
+ OBI:0001495:
+ text: OBI:0001495
+ description: A T cell epitope dependent biological activity assay that detects
+ the ability of epitope specific helper T cells to enhance either B cell
+ or T cell adaptive immune response function.
+ meaning: OBI:0001495
+ title: in vivo assay measuring epitope specific T cell helper activity
+ OBI:0001496:
+ text: OBI:0001496
+ description: A flow cytometry assay that detects interleukin-22 production
+ by T cells.
+ meaning: OBI:0001496
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-22
+ production by T cells
+ OBI:0001497:
+ text: OBI:0001497
+ description: A T cell epitope specific cytotoxic T cell degranulation assay
+ that detects perforin release by T cells.
+ meaning: OBI:0001497
+ title: assay measuring epitope specific perforin release by T cells
+ OBI:0001499:
+ text: OBI:0001499
+ description: A binding assay that uses fluorescence detection as an indicator
+ of binding.
+ meaning: OBI:0001499
+ title: binding assay using fluorescence detection
+ OBI:0001500:
+ text: OBI:0001500
+ description: A MHC ligand processing and presentation assay in which an HPL
+ chromatography is run to separate an input mixture of ligands eluted from
+ MHC into fractions. These fractions are tested for recognition by T cells
+ and compared to the recognition of a synthetic ligand that is presumed to
+ be the recognized epitope. Identical HPLC fractionation and T cell recognition
+ patterns confirm that the specific ligand was presented by MHC molecules.
+ meaning: OBI:0001500
+ title: coelution assay measuring MHC ligand processing and presentation using
+ T cell recognition of HPLC fractionated eluate compared to synthetic ligand
+ OBI:0001501:
+ text: OBI:0001501
+ description: An assay in which a material's fluorescence is determined.
+ meaning: OBI:0001501
+ title: fluorescence detection assay
+ OBI:0001507:
+ text: OBI:0001507
+ description: An efficacy of T cell epitope intervention experiment that detects
+ a decrease in disease.
+ meaning: OBI:0001507
+ title: in vivo assay measuring T cell epitope specific treatment of disease
+ OBI:0001509:
+ text: OBI:0001509
+ description: A MHC ligand processing and presentation assay that uses Edman
+ degradation to identify the eluted ligands
+ meaning: OBI:0001509
+ title: Edman degradation assay measuring MHC ligand processing and presentation
+ OBI:0001510:
+ text: OBI:0001510
+ description: A mass spectrometry of MHC ligands that identifies eluted ligands
+ from secreted MHC.
+ meaning: OBI:0001510
+ title: mass spectrometry assay measuring MHC ligand processing and presentation
+ of MHC ligands eluted from secreted MHC
+ OBI:0001512:
+ text: OBI:0001512
+ description: A cytometric bead array assay that detects interleukin-17A production
+ by T cells.
+ meaning: OBI:0001512
+ title: cytometric bead array assay measuring epitope specific interleukin-17A
+ production by T cells
+ OBI:0001513:
+ text: OBI:0001513
+ description: A radioactivity detection assay that detects loss of binding
+ of a known reference ligand to purified-MHC due to competition by the ligand
+ under investigation.
+ meaning: OBI:0001513
+ title: radioactivity detection assay measuring competitive binding of a purified-MHC:ligand
+ complex
+ OBI:0001516:
+ text: OBI:0001516
+ description: A radioactivity detection assay that measures half maximal effective
+ concentration (EC50) to detect the direct binding of a cell-lysate-MHC molecule
+ with a ligand.
+ meaning: OBI:0001516
+ title: radioactivity detection assay measuring half maximal effective concentration
+ [EC50] to determine direct binding of a cell-lysate-MHC:ligand complex
+ OBI:0001517:
+ text: OBI:0001517
+ description: A radioactivity detection assay that measures half maximal inhibitory
+ concentration (IC50) to detect the loss of binding of a known reference
+ ligand to cell-bound-MHC due to competition by the ligand under investigation.
+ meaning: OBI:0001517
+ title: radioactivity detection assay measuring half maximal inhibitory concentration
+ [IC50] to determine competitive binding of a cell-bound-MHC:ligand complex
+ OBI:0001519:
+ text: OBI:0001519
+ description: A fluorescence detection assay that detects direct binding of
+ a cell-lysate-MHC molecule with a ligand.
+ meaning: OBI:0001519
+ title: fluorescence detection assay measuring direct binding of a cell-lysate-MHC:ligand
+ complex
+ OBI:0001520:
+ text: OBI:0001520
+ description: A fluorescence detection assay that measures half maximal inhibitory
+ concentration (IC50) to detect the loss of binding of a known reference
+ ligand to cell-bound-MHC due to competition by the ligand under investigation.
+ meaning: OBI:0001520
+ title: fluorescence detection assay measuring half maximal inhibitory concentration
+ [IC50] to determine competitive binding of a cell-bound-MHC:ligand complex
+ OBI:0001521:
+ text: OBI:0001521
+ description: An enzyme-linked immunosorbent assay that detects granulocyte
+ colony stimulating factor production by T cells.
+ meaning: OBI:0001521
+ title: ELISA measuring epitope specific granulocyte colony stimulating factor
+ production by T cells
+ OBI:0001523:
+ text: OBI:0001523
+ description: A cytometric bead array assay that detects interleukin-17F production
+ by T cells.
+ meaning: OBI:0001523
+ title: cytometric bead array assay measuring epitope specific interleukin-17F
+ production by T cells
+ OBI:0001524:
+ text: OBI:0001524
+ description: A fluorescence detection assay that measures equilibrium association
+ constant (KA) to detect the direct binding of a cell-bound-MHC molecule
+ with a ligand.
+ meaning: OBI:0001524
+ title: fluorescence detection assay measuring equilibrium association constant
+ [KA] to determine direct binding of a cell-bound-MHC:ligand complex
+ OBI:0001531:
+ text: OBI:0001531
+ description: A fluorescence detection assay that measures half life to detect
+ the direct binding of a purified-MHC molecule with a ligand.
+ meaning: OBI:0001531
+ title: fluorescence detection assay measuring half life to determine direct
+ binding of a purified-MHC:ligand complex
+ OBI:0001532:
+ text: OBI:0001532
+ description: A cytometric bead array assay that detects interleukin-9 production
+ by T cells.
+ meaning: OBI:0001532
+ title: cytometric bead array assay measuring epitope specific interleukin-9
+ production by T cells
+ OBI:0001534:
+ text: OBI:0001534
+ description: A fluorescence detection assay that detects loss of binding of
+ a known reference ligand to purified-MHC due to competition by the ligand
+ under investigation.
+ meaning: OBI:0001534
+ title: fluorescence detection assay measuring competitive binding of a purified-MHC:ligand
+ complex
+ OBI:0001537:
+ text: OBI:0001537
+ description: A fluorescence detection assay that measures equilibrium dissociation
+ constant (KD) to detect the loss of binding of a known reference ligand
+ to purified-MHC due to competition by the ligand under investigation.
+ meaning: OBI:0001537
+ title: fluorescence detection assay measuring equilibrium dissociation constant
+ [KD] to determine competitive binding of a purified-MHC:ligand complex
+ OBI:0001539:
+ text: OBI:0001539
+ description: A fluorescence detection assay that measures equilibrium dissociation
+ constant (KD) to detect the loss of binding of a known reference ligand
+ to cell-bound-MHC due to competition by the ligand under investigation.
+ meaning: OBI:0001539
+ title: fluorescence detection assay measuring equilibrium dissociation constant
+ [KD] to determine competitive binding of a cell-bound-MHC:ligand complex
+ OBI:0001541:
+ text: OBI:0001541
+ description: A fluorescence detection assay measuring binding on rate (kon)
+ to detect direct binding of a purified-MHC:ligand complex.
+ meaning: OBI:0001541
+ title: fluorescence detection assay measuring binding on rate [kon] to determine
+ direct binding of a purified-MHC:ligand complex
+ OBI:0001542:
+ text: OBI:0001542
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-13 production by T cells.
+ meaning: OBI:0001542
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-13 production by T cells
+ OBI:0001543:
+ text: OBI:0001543
+ description: A fluorescence detection assay that measures equilibrium dissociation
+ constant (KD) to detect direct binding of a purified-MHC molecule with a
+ ligand and provides EC50 values determined under assay conditions where
+ the EC50 approximates a KD value.
+ meaning: OBI:0001543
+ title: fluorescence detection assay measuring equilibrium dissociation constant
+ [KD] to determine direct binding of a purified-MHC:ligand complex approximated
+ by EC50
+ OBI:0001544:
+ text: OBI:0001544
+ description: A radioactivity detection assay that measures equilibrium dissociation
+ constant (KD) to detect the loss of binding of a known reference ligand
+ to cell-lysate-MHC due to competition by the ligand under investigation.
+ meaning: OBI:0001544
+ title: radioactivity detection assay measuring equilibrium dissociation constant
+ [KD] to determine competitive binding of a cell-lysate-MHC:ligand complex
+ OBI:0001545:
+ text: OBI:0001545
+ description: A flow cytometry assay that detects macrophage inflammatory protein-1
+ alpha production by T cells.
+ meaning: OBI:0001545
+ title: intracellular cytokine staining assay measuring epitope specific macrophage
+ inflammatory protein-1 alpha production by T cells
+ OBI:0001549:
+ text: OBI:0001549
+ description: A radioactivity detection assay that measures equilibrium dissociation
+ constant (KD) to detect the loss of binding of a known reference ligand
+ to cell-bound-MHC due to competition by the ligand under investigation.
+ meaning: OBI:0001549
+ title: radioactivity detection assay measuring equilibrium dissociation constant
+ [KD] to determine competitive binding of a cell-bound-MHC:ligand complex
+ OBI:0001550:
+ text: OBI:0001550
+ description: A qualitative binding assay that detects the binding of a cell-bound-MHC
+ molecule with a ligand.
+ meaning: OBI:0001550
+ title: assay measuring binding of a cell-bound-MHC:ligand complex
+ OBI:0001552:
+ text: OBI:0001552
+ description: A flow cytometry assay that detects tumor necrosis factor (ligand)
+ superfamily member 11 production by T cells.
+ meaning: OBI:0001552
+ title: intracellular cytokine staining assay measuring epitope specific tumor
+ necrosis factor (ligand) superfamily member 11 production by T cells
+ OBI:0001553:
+ text: OBI:0001553
+ description: A MHC:ligand binding assay that measures a binding constant.
+ meaning: OBI:0001553
+ title: assay measuring a binding constant of a MHC:ligand complex
+ OBI:0001555:
+ text: OBI:0001555
+ description: A qualitative binding assay that detects the binding of a purified-MHC
+ molecule with a ligand.
+ meaning: OBI:0001555
+ title: assay measuring binding of a purified-MHC:ligand complex
+ OBI:0001556:
+ text: OBI:0001556
+ description: A radioactivity detection assay that detects direct binding of
+ a cell-lysate-MHC molecule with a ligand.
+ meaning: OBI:0001556
+ title: radioactivity detection assay measuring direct binding of a cell-lysate-MHC:ligand
+ complex
+ OBI:0001558:
+ text: OBI:0001558
+ description: A radioactivity detection assay that measures half life to detect
+ the direct binding of a cell-bound-MHC molecule with a ligand.
+ meaning: OBI:0001558
+ title: radioactivity detection assay measuring half life to determine direct
+ binding of a cell-bound-MHC:ligand complex
+ OBI:0001559:
+ text: OBI:0001559
+ description: A fluorescence detection assay that measures half life to detect
+ the direct binding of a cell-bound-MHC molecule with a ligand.
+ meaning: OBI:0001559
+ title: fluorescence detection assay measuring half life to determine direct
+ binding of a cell-bound-MHC:ligand complex
+ OBI:0001561:
+ text: OBI:0001561
+ description: A fluorescence detection assay that measures half maximal effective
+ concentration (EC50) to detect direct binding of a cell-bound-MHC molecule
+ with a ligand.
+ meaning: OBI:0001561
+ title: fluorescence detection assay measuring half maximal effective concentration
+ [EC50] to determine direct binding of a cell-bound-MHC:ligand complex
+ OBI:0001562:
+ text: OBI:0001562
+ description: A flow cytometry assay that detects interleukin-17F production
+ by T cells.
+ meaning: OBI:0001562
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-17F
+ production by T cells
+ OBI:0001564:
+ text: OBI:0001564
+ description: A radioactivity detection assay that measures equilibrium dissociation
+ constant (KD) to detect the loss of binding of a known reference ligand
+ to purified-MHC due to competition by the ligand under investigation and
+ provides IC50 values determined under assay conditions where the IC50 approximates
+ a KD value.
+ meaning: OBI:0001564
+ title: radioactivity detection assay measuring equilibrium dissociation constant
+ [KD] to determine competitive binding of a purified-MHC:ligand complex approximated
+ by IC50
+ OBI:0001565:
+ text: OBI:0001565
+ description: A radioactivity detection assay that measures half life to detect
+ the direct binding of a cell-lysate-MHC molecule with a ligand.
+ meaning: OBI:0001565
+ title: radioactivity detection assay measuring half life to determine direct
+ binding of a cell-lysate-MHC:ligand complex
+ OBI:0001567:
+ text: OBI:0001567
+ description: A radioactivity detection assay that measures binding off rate
+ [koff] to detect direct binding of a cell-lysate-MHC molecule with a ligand.
+ meaning: OBI:0001567
+ title: radioactivity detection assay measuring binding off rate [koff] to
+ determine direct binding of a cell-lysate-MHC:ligand complex
+ OBI:0001568:
+ text: OBI:0001568
+ description: A radioactivity detection assay that measures half maximal inhibitory
+ concentration (IC50) to detect the loss of binding of a known reference
+ ligand to purified-MHC due to competition by the ligand under investigation.
+ meaning: OBI:0001568
+ title: radioactivity detection assay measuring half maximal inhibitory concentration
+ [IC50] to determine competitive binding of a purified-MHC:ligand complex
+ OBI:0001569:
+ text: OBI:0001569
+ description: A fluorescence detection assay that measures binding off rate
+ [koff] to detect direct binding of a purified-MHC molecule with a ligand.
+ meaning: OBI:0001569
+ title: fluorescence detection assay measuring binding off rate [koff] to determine
+ direct binding of a purified-MHC:ligand complex
+ OBI:0001570:
+ text: OBI:0001570
+ description: A T cell epitope specific cytokine production assay that detects
+ vascular endothelial growth factor production by T cells.
+ meaning: OBI:0001570
+ title: assay measuring epitope specific vascular endothelial growth factor
+ production by T cells
+ OBI:0001577:
+ text: OBI:0001577
+ description: A cytometric bead array assay that detects interleukin-22 production
+ by T cells.
+ meaning: OBI:0001577
+ title: cytometric bead array assay measuring epitope specific intracellular
+ cytokine staining (ICS) IL-22 production by T cells
+ OBI:0001578:
+ text: OBI:0001578
+ description: An enzyme-linked immunosorbent assay that detects vascular endothelial
+ growth factor production by T cells.
+ meaning: OBI:0001578
+ title: ELISA measuring epitope specific vascular endothelial growth factor
+ production by T cells
+ OBI:0001579:
+ text: OBI:0001579
+ description: A qualitative binding assay that detects the binding of a cell-lysate-MHC
+ molecule with a ligand.
+ meaning: OBI:0001579
+ title: assay measuring binding of a cell-lysate-MHC:ligand complex
+ OBI:0001584:
+ text: OBI:0001584
+ description: A phage display binding assay that detects direct binding of
+ a purified-MHC molecule with a ligand.
+ meaning: OBI:0001584
+ title: phage display binding assay measuring binding of a purified-MHC:ligand
+ complex
+ OBI:0001585:
+ text: OBI:0001585
+ description: A cytometric bead array assay that detects interleukin-7 production
+ by T cells.
+ meaning: OBI:0001585
+ title: cytometric bead array assay measuring epitope specific interleukin-7
+ production by T cells
+ OBI:0001586:
+ text: OBI:0001586
+ description: A radioactivity detection assay that measures half life to detect
+ the direct binding of a purified-MHC molecule with a ligand.
+ meaning: OBI:0001586
+ title: radioactivity detection assay measuring half life to determine direct
+ binding of a purified-MHC:ligand complex
+ OBI:0001587:
+ text: OBI:0001587
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-7 production by T cells.
+ meaning: OBI:0001587
+ title: assay measuring epitope specific interleukin-7 production by T cells
+ OBI:0001589:
+ text: OBI:0001589
+ description: A flow cytometry assay that detects interleukin-17A production
+ by T cells.
+ meaning: OBI:0001589
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-17A
+ production by T cells
+ OBI:0001590:
+ text: OBI:0001590
+ description: A fluorescence detection assay that detects direct binding of
+ a purified-MHC molecule with a ligand.
+ meaning: OBI:0001590
+ title: fluorescence detection assay measuring direct binding of a purified-MHC:ligand
+ complex
+ OBI:0001591:
+ text: OBI:0001591
+ description: A binding assay that measures the formation or disassociation
+ of a complex of 2 material entities directly without use of a competitve
+ ligand.
+ meaning: OBI:0001591
+ title: direct binding assay
+ OBI:0001592:
+ text: OBI:0001592
+ description: A fluorescence detection assay that measures half maximal effective
+ concentration (EC50) to detect direct binding of a purified-MHC molecule
+ with a ligand.
+ meaning: OBI:0001592
+ title: fluorescence detection assay measuring half maximal effective concentration
+ [EC50] to determine direct binding of a purified-MHC:ligand complex
+ OBI:0001593:
+ text: OBI:0001593
+ description: A binding assay that detects the inhibition of binding between
+ 2 material entities known to form a complex by the addition of a third material
+ entity of interest. Inhibition of binding between the 2 materials reflects
+ binding by the third material.
+ meaning: OBI:0001593
+ title: competitive inhibition of binding assay
+ OBI:0001594:
+ text: OBI:0001594
+ description: A fluorescence detection assay that detects loss of binding of
+ a known reference ligand to cell-bound-MHC due to competition by the ligand
+ under investigation.
+ meaning: OBI:0001594
+ title: fluorescence detection assay measuring competitive binding of a cell-bound-MHC:ligand
+ complex
+ OBI:0001595:
+ text: OBI:0001595
+ description: A X-ray crystallography 3D molecular structure determination
+ assay that characterizes the 3-dimensional molecular structure of a MHC:ligand
+ complex.
+ meaning: OBI:0001595
+ title: X-ray crystallography assay determining the 3D structure of a MHC:ligand
+ complex
+ OBI:0001597:
+ text: OBI:0001597
+ description: A cell bound MHC ligand binding half maximal inhibitory concentration
+ (IC50) determination assay that uses a T cell epitope recognition assay
+ to measure ligand binding.
+ meaning: OBI:0001597
+ title: cell bound MHC competitive binding assay measuring half maximal inhibitory
+ concentration [IC50] of a MHC:ligand complex using T cell epitope recognition
+ OBI:0001599:
+ text: OBI:0001599
+ description: A radioactivity detection assay that detects loss of binding
+ of a known reference ligand to cell-bound-MHC due to competition by the
+ ligand under investigation.
+ meaning: OBI:0001599
+ title: radioactivity detection assay measuring competitive binding of a cell-bound-MHC:ligand
+ complex
+ OBI:0001600:
+ text: OBI:0001600
+ description: A T cell epitope specific cytokine production assay that detects
+ granulocyte colony stimulating factor production by T cells.
+ meaning: OBI:0001600
+ title: assay measuring epitope specific granulocyte colony stimulating factor
+ production by T cells
+ OBI:0001601:
+ text: OBI:0001601
+ description: A cytometric bead array assay that detects interleukin-21 production
+ by T cells.
+ meaning: OBI:0001601
+ title: cytometric bead array assay measuring epitope specific intracellular
+ cytokine staining (ICS) IL-21 production by T cells
+ OBI:0001602:
+ text: OBI:0001602
+ description: A radioactivity detection assay that detects direct binding of
+ a cell-bound-MHC molecule with a ligand.
+ meaning: OBI:0001602
+ title: radioactivity detection assay measuring direct binding of a cell-bound-MHC:ligand
+ complex
+ OBI:0001604:
+ text: OBI:0001604
+ description: A fluorescence detection assay that measures the 50% dissociation
+ of binding temperature of a purified-MHC molecule with a ligand.
+ meaning: OBI:0001604
+ title: fluorescence detection assay measuring 50% dissociation of binding
+ temperature [Tm] of a purified-MHC:ligand complex
+ OBI:0001606:
+ text: OBI:0001606
+ description: A fluorescence detection assay that detects direct binding of
+ a cell-bound-MHC molecule with a ligand.
+ meaning: OBI:0001606
+ title: fluorescence detection assay measuring direct binding of a cell-bound-MHC:ligand
+ complex
+ OBI:0001607:
+ text: OBI:0001607
+ description: An assay of epitope specific tumor necrosis factor (ligand) superfamily
+ member 11 production by T cells that detects tumor necrosis factor production.
+ meaning: OBI:0001607
+ title: assay measuring epitope specific tumor necrosis factor (ligand) superfamily
+ member 11 production by T cells
+ OBI:0001608:
+ text: OBI:0001608
+ description: A radioactivity detection assay that detects direct binding of
+ a purified-MHC molecule with a ligand.
+ meaning: OBI:0001608
+ title: radioactivity detection assay measuring direct binding of a purified-MHC:ligand
+ complex
+ OBI:0001609:
+ text: OBI:0001609
+ description: A flow cytometry assay that detects interleukin-8 production
+ by T cells.
+ meaning: OBI:0001609
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-8
+ production by T cells
+ OBI:0001610:
+ text: OBI:0001610
+ description: A cytometric bead array assay that detects interleukin-23 production
+ by T cells.
+ meaning: OBI:0001610
+ title: cytometric bead array assay measuring epitope specific intracellular
+ cytokine staining (ICS) IL-23 production by T cells
+ OBI:0001613:
+ text: OBI:0001613
+ description: A fluorescence detection assay that measures half maximal inhibitory
+ concentration (IC50) to detect the loss of binding of a known reference
+ ligand to purified-MHC due to competition by the ligand under investigation.
+ meaning: OBI:0001613
+ title: fluorescence detection assay measuring half maximal inhibitory concentration
+ [IC50] to determine competitive binding of a purified-MHC:ligand complex
+ OBI:0001624:
+ text: OBI:0001624
+ description: An organism detection assay that identifies the organism species
+ in a specimen.
+ meaning: OBI:0001624
+ title: organism species detection assay
+ OBI:0001630:
+ text: OBI:0001630
+ description: An analyte assay that uses a biomaterial's preferential affinity
+ for either the mobile phase or the stationary phase to separate it from
+ other materials and thereby detect its presence in an input material.
+ meaning: OBI:0001630
+ title: analytical chromatography
+ OBI:0001631:
+ text: OBI:0001631
+ description: An imaging assay in which an electrons are used to probe the
+ density, shape and composition of an input material which are detected in
+ an electron microscope and utilized to produce an image of the material.
+ meaning: OBI:0001631
+ title: electron microscopy imaging assay
+ OBI:0001632:
+ text: OBI:0001632
+ description: A assay detecting a molecular label assay in which the label
+ is attached to an antibody so that substances are marked based on the antibody's
+ binding specificity.
+ meaning: OBI:0001632
+ title: immuno staining assay
+ OBI:0001634:
+ text: OBI:0001634
+ description: A binding assay in which the heat generated or absorbed during
+ a binding event is measured, which allows determination of binding constants,
+ reaction stoichiometry, enthalpy and entropy.
+ meaning: OBI:0001634
+ title: calorimetric binding assay
+ OBI:0001635:
+ text: OBI:0001635
+ description: A binding assay in which affinity is measured by detecting a
+ change in fluorescence (usually quenching) that occurs upon binding of the
+ antibody to the ligand. The fluorescent signal that is affected by binding
+ is either from an exogenous fluorophore attached to the ligand, or is the
+ intrisic fluorescence of aromatic (tryptophan) residues on the binding site
+ of the antibody (no conjugated fluorophore necessary) or, less commonly,
+ on the ligand binding region (epitope).
+ meaning: OBI:0001635
+ title: antibody binding detection by fluorescence quenching
+ OBI:0001638:
+ text: OBI:0001638
+ description: A B cell epitope equilibrium dissociation constant (KD) assay
+ that provides IC50 values determined under assay conditions where the IC50
+ approximates a KD value using a B cell epitope antigen inhibition of binding
+ assay.
+ meaning: OBI:0001638
+ title: antigen inhibition assay measuring the dissociation constant [KD] of
+ a B cell epitope:antibody complex approximated by IC50
+ OBI:0001639:
+ text: OBI:0001639
+ description: A B cell epitope specific activation of additional immune response
+ assay that detects histamine release in vitro.
+ meaning: OBI:0001639
+ title: assay measuring epitope specific Ig-mediated histamine release
+ OBI:0001640:
+ text: OBI:0001640
+ description: A B cell epitope dependent biological activity determination
+ assay that detects antigen activation.
+ meaning: OBI:0001640
+ title: assay measuring epitope specific immunoglobulin-mediated antigen activation
+ OBI:0001641:
+ text: OBI:0001641
+ description: A B cell epitope specific activation of additional immune response
+ assay that detects complement-dependent cytotoxicity in vitro .
+ meaning: OBI:0001641
+ title: assay measuring epitope specific complement-dependent cytotoxicity
+ OBI:0001642:
+ text: OBI:0001642
+ description: A B cell epitope specific activation of additional immune response
+ assay that detects antibody-dependent cellular cytotoxicity in vitro.
+ meaning: OBI:0001642
+ title: assay measuring epitope specific antibody-dependent cellular cytotoxicity
+ OBI:0001643:
+ text: OBI:0001643
+ description: A B cell epitope dependent biological activity determination
+ assay that detects neutralization of the antigen.
+ meaning: OBI:0001643
+ title: assay measuring epitope specific immunoglobulin-mediated neutralization
+ OBI:0001644:
+ text: OBI:0001644
+ description: A B cell epitope specific activation of additional immune response
+ assay that detects opsonization in vitro .
+ meaning: OBI:0001644
+ title: assay measuring epitope specific opsonization
+ OBI:0001645:
+ text: OBI:0001645
+ description: A calorimetric binding assay that detects the binding of an antigen
+ with an antibody.
+ meaning: OBI:0001645
+ title: calorimetry assay measuring binding of a B cell epitope:antibody complex
+ OBI:0001646:
+ text: OBI:0001646
+ description: An electron-microscopy 3D molecular structure determination assay
+ that characterizes the 3-dimensional molecular structrue of a B cell epitope:antibody
+ complex
+ meaning: OBI:0001646
+ title: electron microscopy assay determining the 3D structure of a B cell
+ epitope:antibody complex
+ OBI:0001647:
+ text: OBI:0001647
+ description: A nuclear magnetic resonance 3D molecular structure determination
+ assay that characterizes the 3-dimensional structure of a B cell epitope:antibody
+ complex.
+ meaning: OBI:0001647
+ title: NMR assay determining the 3D structure of a B cell epitope:antibody
+ complex
+ OBI:0001648:
+ text: OBI:0001648
+ description: A cross-blocking assay that detects the binding of an antigen
+ with an antibody.
+ meaning: OBI:0001648
+ title: cross blocking assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0001649:
+ text: OBI:0001649
+ description: A radio immuno assay that detects the binding of an antigen with
+ an antibody.
+ meaning: OBI:0001649
+ title: RIA measuring binding of a B cell epitope:antibody complex
+ OBI:0001650:
+ text: OBI:0001650
+ description: An immunoblot assay that detects the binding of an antigen with
+ an antibody.
+ meaning: OBI:0001650
+ title: immunoblot assay measuring binding of a B cell epitope:antibody complex
+ OBI:0001651:
+ text: OBI:0001651
+ description: A surface plasmon resonance binding assay that detects the binding
+ of an antigen with an antibody.
+ meaning: OBI:0001651
+ title: plasmon resonance assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0001652:
+ text: OBI:0001652
+ description: An immuno staining assay that detects the binding of an antigen
+ with an antibody.
+ meaning: OBI:0001652
+ title: immuno staining assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0001653:
+ text: OBI:0001653
+ description: An immunoprecipitation assay that detects the binding of an antigen
+ with an antibody.
+ meaning: OBI:0001653
+ title: immunoprecipitation assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0001654:
+ text: OBI:0001654
+ description: A mass spectrometry assay that detects the binding of an antigen
+ with an antibody.
+ meaning: OBI:0001654
+ title: mass spectrometry assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0001655:
+ text: OBI:0001655
+ description: A phage display binding assay that detects the binding of an
+ antigen with an antibody.
+ meaning: OBI:0001655
+ title: phage display assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0001656:
+ text: OBI:0001656
+ description: An electron microscopy imaging assay that detects the binding
+ of an antigen with an antibody.
+ meaning: OBI:0001656
+ title: electron microscopy assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0001657:
+ text: OBI:0001657
+ description: An enzyme-linked immunosorbent assay that detects the binding
+ of an antigen with an antibody.
+ meaning: OBI:0001657
+ title: ELISA measuring binding of a B cell epitope:antibody complex
+ OBI:0001658:
+ text: OBI:0001658
+ description: An enzyme-linked immunospot assay that detects the binding of
+ an antigen with an antibody.
+ meaning: OBI:0001658
+ title: ELISPOT assay measuring binding of a B cell epitope:antibody complex
+ OBI:0001659:
+ text: OBI:0001659
+ description: A flow cytometry assay that detects the binding of an antigen
+ with an antibody.
+ meaning: OBI:0001659
+ title: flow cytometry assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0001660:
+ text: OBI:0001660
+ description: A flow cytometry assay that detects epitope specific granzyme
+ A release by T cells.
+ meaning: OBI:0001660
+ title: intracellular material detection assay measuring epitope specific granzyme
+ A release by T cells
+ OBI:0001661:
+ text: OBI:0001661
+ description: An analytical chromatography assay that detects the binding of
+ an antigen with an antibody.
+ meaning: OBI:0001661
+ title: chromatography assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0001662:
+ text: OBI:0001662
+ description: A B cell epitope qualitative binding to antibody assay that uses
+ a nuclear magnetic resonance assay.
+ meaning: OBI:0001662
+ title: NMR assay measuring binding of a B cell epitope:antibody complex
+ OBI:0001663:
+ text: OBI:0001663
+ description: An enzyme-linked immunosorbent assay that detects epitope specific
+ granulysin release by T cells.
+ meaning: OBI:0001663
+ title: ELISA measuring epitope specific granulysin release by T cells
+ OBI:0001664:
+ text: OBI:0001664
+ description: A flow cytometry assay that detects epitope specific granulysin
+ release by T cells.
+ meaning: OBI:0001664
+ title: intracellular material detection assay measuring epitope specific granulysin
+ release by T cells
+ OBI:0001665:
+ text: OBI:0001665
+ description: A fluorescence detection assay that measures binding off rate
+ [koff] to detect direct binding of a cell-bound-MHC molecule with a ligand.
+ meaning: OBI:0001665
+ title: fluorescence detection assay measuring binding off rate [koff] to determine
+ direct binding of a cell-bound-MHC:ligand complex
+ OBI:0001666:
+ text: OBI:0001666
+ description: A fluorescence detection assay that measures binding on rate
+ (kon) to detect direct binding of a cell-bound-MHC molecule with a ligand.
+ meaning: OBI:0001666
+ title: fluorescence detection assay measuring binding on rate [kon] to determine
+ direct binding of a cell-bound-MHC:ligand complex
+ OBI:0001667:
+ text: OBI:0001667
+ description: A fluorescence detection assay that measures equilibrium dissociation
+ constant (KD) to detect the loss of binding of a known reference ligand
+ to purified-MHC due to competition by the ligand under investigation and
+ provides IC50 values determined under assay conditions where the IC50 approximates
+ a KD value.
+ meaning: OBI:0001667
+ title: fluorescence detection assay measuring equilibrium dissociation constant
+ [KD] to determine competitive binding of a purified-MHC:ligand complex approximated
+ by IC50
+ OBI:0001668:
+ text: OBI:0001668
+ description: A binding assay that screens membrane soluble proteins by fusion
+ of two integral membrane proteins (bait and prey) to two different ubiquitin
+ moieties. One moiety is also fused to a transcription factor (TF) that can
+ be cleaved off by ubiquitin specific proteases. Upon bait and prey interaction,
+ Nub and Cub-moieties assemble, reconstituting the split-ubiquitin. The reconstituted
+ split-ubiquitin molecule is recognized by ubiquitin specific proteases,
+ which cleave off the reporter protein, allowing it to induce the transcription
+ of reporter genes.
+ meaning: OBI:0001668
+ title: split-ubiquitin assay
+ OBI:0001669:
+ text: OBI:0001669
+ description: An assay that measures protein-protein interactions by separating
+ target proteins on an SDS-PAGE gel, transfering them to a solid substrate,
+ hybridizing with a protein probe and visualizing bound proteins using a
+ probe-directed antibody. This is a adaptation on the western blot assay.
+ meaning: OBI:0001669
+ title: far-western blot assay
+ OBI:0001670:
+ text: OBI:0001670
+ description: An assay that determines the presence and estimates abundance
+ of transcript species by first creating an homo or heteroduplex by adding
+ a specific, complementary sequence to the sequence of interest and then
+ exposing the mixture of ribonuclease, which will degrade only single stranded
+ molecules. A detection step will reveal if the sample contained a sequence
+ of interest.
+ meaning: OBI:0001670
+ title: RNA protection assay
+ OBI:0001671:
+ text: OBI:0001671
+ description: An assay that measures information about Protein-DNA or Protein-RNA
+ interactions using gel electrophoresis and relying on the fact the molecular
+ interactions will cause the heterodimer to be retarded on the gel when compared
+ to controls corresponding to protein extract alone and protein extract +
+ neutral nucleic acid.
+ meaning: OBI:0001671
+ title: electrophoretic mobility shift assay
+ OBI:0001672:
+ text: OBI:0001672
+ description: An assay which transiently disrupts gene transcripts by expressing
+ antisense RNA constructs or delivering RNA interfering molecules in cells.
+ meaning: OBI:0001672
+ title: gene knock-down assay
+ OBI:0001673:
+ text: OBI:0001673
+ description: A transcription profiling by RNA sequencing assay that is performed
+ using a very low amount (nanogram scale) of mRNA samples using Cap analysis
+ gene expression (CAGE).
+ meaning: OBI:0001673
+ title: nano-cap analysis of gene expression assay
+ OBI:0001674:
+ text: OBI:0001674
+ description: A transcription profiling by RNA sequencing assay which measures
+ RNA transcript abundances in biological samples by extracting 5' ends of
+ capped transcripts, RTPCR and sequence those. Copy numbers of CAGE tags
+ provide a way of quantification and provide a measure of expression of the
+ transcriptome
+ meaning: OBI:0001674
+ title: cap analysis of gene expression assay
+ OBI:0001675:
+ text: OBI:0001675
+ description: An enzyme-linked immunosorbent assay that detects interleukin-17A
+ production by T cells.
+ meaning: OBI:0001675
+ title: ELISA measuring epitope specific interleukin-17A production by T cells
+ OBI:0001676:
+ text: OBI:0001676
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-7 production by T cells.
+ meaning: OBI:0001676
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-7 production by T cells
+ OBI:0001679:
+ text: OBI:0001679
+ description: An assay that detects protein protein interactions and protein
+ DNA interactions by testing for physical interactions (such as binding)
+ between two proteins or a single protein and a DNA molecule, respectively.
+ The premise behind the test is the activation of downstream reporter gene(s)
+ by the binding of a transcription factor onto an upstream activating sequence
+ (UAS). For two-hybrid screening, the transcription factor is split into
+ two separate fragments, called the binding domain (BD) and activating domain
+ (AD). The BD is the domain responsible for binding to the UAS and the AD
+ is the domain responsible for the activation of transcription. The Y2H is
+ thus a protein-fragment complementation assay.
+ meaning: OBI:0001679
+ title: yeast 2-hybrid assay
+ OBI:0001680:
+ text: OBI:0001680
+ description: A binding assay that detects interacting proteins for a targeted
+ domain where mammalian guanyl nucleotide exchange factor (GEF) Sos is recruited
+ to the Saccharomyces cerevisiae plasma membrane harboring a temperature-sensitive
+ Ras GEF, Cdc25-2, allowing growth at the nonpermissive temperature using
+ the Sos recruitment system, a kind of yeast 2 hybrid system.
+ meaning: OBI:0001680
+ title: Sos-recruitment assay
+ OBI:0001681:
+ text: OBI:0001681
+ description: An assay that determines protein DNA interactions using a single
+ fusion protein in which the activating domain is linked directly to the
+ binding domain.
+ meaning: OBI:0001681
+ title: yeast one-hybrid assay
+ OBI:0001682:
+ text: OBI:0001682
+ description: An assay that identifies the sequence-specific target site of
+ a DNA-binding domain. In this system, a given transcription factor (TF)
+ is expressed as a fusion to a subunit of RNA polymerase. In parallel, a
+ library of randomized oligonucleotides representing potential TF target
+ sequences, is cloned into a separate vector containing the selectable genes
+ HIS3 and URA3. If the DNA-binding domain (bait) binds a potential DNA target
+ site (prey) in vivo, it will recruit RNA polymerase to the promoter and
+ activate transcription of the reporter genes in that clone. The two reporter
+ genes, HIS3 and URA3, allow for positive and negative selections, respectively.
+ At the end of the process, positive clones are sequenced and examined with
+ motif-finding tools in order to resolve the favoured DNA target sequence
+ meaning: OBI:0001682
+ title: bacterial one-hybrid assay
+ OBI:0001683:
+ text: OBI:0001683
+ description: An in-situ hybridization assay that uses fluorescence to detect
+ chromosomal integrity
+ meaning: OBI:0001683
+ title: chromosome organization assay by fluorescence in-situ hybridization
+ OBI:0001684:
+ text: OBI:0001684
+ description: An assay that uses initial modification of DNA by sodium bisulfite,
+ converting all unmethylated, but not methylated, cytosines to uracil, and
+ subsequent amplification with primers specific for methylated versus unmethylated
+ DNA.
+ meaning: OBI:0001684
+ title: methylation-specific polymerase chain reaction assay
+ OBI:0001685:
+ text: OBI:0001685
+ description: An assay that estimates genome-wide DNA methylation and measures
+ methylation of DNA sequences. AIMS is based on the differential enzymatic
+ digestion of genomic DNA with methylation-sensitive and methylation-insensitive
+ isoschizomers followed by restrained PCR amplification of methylated sequences.
+ meaning: OBI:0001685
+ title: amplification of intermethylated sites assay
+ OBI:0001686:
+ text: OBI:0001686
+ description: An assay that localizes a specific DNA or RNA sequence within
+ a portion or section of tissue using artificially induced nucleic hybridization.
+ meaning: OBI:0001686
+ title: in-situ hybridization assay
+ OBI:0001689:
+ text: OBI:0001689
+ description: 'An assay which uses compound cytochalasin (CHEBI: 23528) to
+ block actin polymerization-dependent cell motility (GO:0070358) and actin
+ filament polymerization (GO:0030041).'
+ meaning: OBI:0001689
+ title: cytochalasin-induced inhibition of actin polymerization assay
+ OBI:0001692:
+ text: OBI:0001692
+ description: An efficacy of B cell epitope intervention experiment that uses
+ a epitope protection experiment based on reduction of fertility.
+ meaning: OBI:0001692
+ title: in vivo assay measuring B cell epitope specific protection from fertility
+ OBI:0001693:
+ text: OBI:0001693
+ description: An efficacy of B cell epitope intervention experiment that uses
+ a tolerance induction intervention experiment.
+ meaning: OBI:0001693
+ title: in vivo assay measuring B cell epitope specific tolerance induction
+ OBI:0001694:
+ text: OBI:0001694
+ description: An efficacy of B cell epitope intervention experiment that detects
+ a hypersensitivity response by monitoring skin reactions.
+ meaning: OBI:0001694
+ title: in vivo assay measuring B cell epitope specific induction of hypersensitivity
+ OBI:0001695:
+ text: OBI:0001695
+ description: A B cell epitope specific activation of additional immune response
+ assay that detects agglutination in vitro.
+ meaning: OBI:0001695
+ title: assay measuring epitope specific immune complex formation
+ OBI:0001696:
+ text: OBI:0001696
+ description: An in vivo assay measuring B cell epitope specific protection
+ from other challenge using survival.
+ meaning: OBI:0001696
+ title: in vivo assay measuring B cell epitope specific protection based on
+ survival
+ OBI:0001697:
+ text: OBI:0001697
+ description: An efficacy of B cell epitope intervention experiment that detects
+ a decrease in disease.
+ meaning: OBI:0001697
+ title: in vivo assay measuring B cell epitope specific treatment of disease
+ OBI:0001698:
+ text: OBI:0001698
+ description: A B cell epitope dependent biological activity determination
+ assay that uses an in vivo intervention experiment.
+ meaning: OBI:0001698
+ title: assay measuring B cell epitope specific in vivo activity
+ OBI:0001699:
+ text: OBI:0001699
+ description: A competitive inhibition of binding assay in which two antibodies
+ that are known to bind the same antigen are tested for the ability of one
+ antibody to inhibit binding of the other antibody to the antigen, thereby
+ determining if they have overlapping binding sites.
+ meaning: OBI:0001699
+ title: antibody cross-blocking assay
+ OBI:0001700:
+ text: OBI:0001700
+ description: An analyte assay in which an input material is mixed with antibodies
+ and bound antigen:antibody complexes are separated out using immunoprecipitation.
+ Either the antibody has known specificy, and the antigen mixture is tested
+ for the presence of a specific antigen, or the antigen solution is well
+ defined and the antibody solution is tested for the presence of antigen
+ specific antibodies.
+ meaning: OBI:0001700
+ title: immunoprecipitation assay
+ OBI:0001701:
+ text: OBI:0001701
+ description: A B cell epitope qualitative binding to antibody assay that measures
+ the ability of an antigen to inhibit antibody binding to a known ligand.
+ meaning: OBI:0001701
+ title: antigen inhibition assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0001703:
+ text: OBI:0001703
+ description: An assay that detects the binding of an antigen with an antibody,
+ and produces a qualitative measurement of the binding as an output.
+ meaning: OBI:0001703
+ title: assay measuring qualitative binding of a B cell epitope:antibody complex
+ OBI:0001704:
+ text: OBI:0001704
+ description: A B cell epitope dependent biological activity determination
+ assay that detects secondary in vitro activity.
+ meaning: OBI:0001704
+ title: assay measuring epitope specific activation of additional immune response
+ in vitro
+ OBI:0001705:
+ text: OBI:0001705
+ description: A B cell epitope dependent biological activity determination
+ assay that detects inhibition of the antibody's activity by the antigen.
+ meaning: OBI:0001705
+ title: assay measuring epitope specific antigen inhibition of antibody activity
+ OBI:0001706:
+ text: OBI:0001706
+ description: A B cell epitope assay that measures the immune response process
+ resulting from the binding of an antibody receptor to epitope or recognition
+ of the epitope.
+ meaning: OBI:0001706
+ title: assay measuring biological activity resulting from B cell epitope:antibody
+ binding
+ OBI:0001708:
+ text: OBI:0001708
+ description: A B cell epitope binding constant determination assay that measures
+ the dissociation constant KD.
+ meaning: OBI:0001708
+ title: assay measuring the dissociation constant [KD] of a B cell epitope:antibody
+ complex
+ OBI:0001709:
+ text: OBI:0001709
+ description: A B cell epitope recognition assay that quantitavely characterizes
+ the binding of an antibody / BCR with a ligand by determining a binding
+ constant.
+ meaning: OBI:0001709
+ title: assay measuring a binding constant of a B cell epitope:antibody complex
+ OBI:0001710:
+ text: OBI:0001710
+ description: An efficacy of B cell epitope intervention experiment that uses
+ a epitope protection experiment.
+ meaning: OBI:0001710
+ title: in vivo assay measuring B cell epitope specific protection from challenge
+ OBI:0001711:
+ text: OBI:0001711
+ description: An efficacy of B cell epitope intervention experiment that uses
+ a disease exacerbation in vivo intervention experiment.
+ meaning: OBI:0001711
+ title: in vivo assay measuring B cell epitope specific disease exacerbation
+ OBI:0001718:
+ text: OBI:0001718
+ description: A B cell epitope binding constant determination assay that measures
+ the on rate.
+ meaning: OBI:0001718
+ title: assay measuring the on rate [kon] of a B cell epitope:antibody complex
+ OBI:0001719:
+ text: OBI:0001719
+ description: A B cell epitope binding constant determination assay that measures
+ the association constant KA.
+ meaning: OBI:0001719
+ title: assay measuring the association constant [KA] of a B cell epitope:antibody
+ complex
+ OBI:0001721:
+ text: OBI:0001721
+ description: A 3D structure determination of bound molecular complex assay
+ that characterizes the 3-dimensional structure of an antigen:antobody complex.
+ meaning: OBI:0001721
+ title: 3D molecular structure determination assay of an antigen:antibody complex
+ OBI:0001723:
+ text: OBI:0001723
+ description: A B cell epitope binding constant determination assay that measures
+ the off rate.
+ meaning: OBI:0001723
+ title: assay measuring the off rate [koff] of a B cell epitope:antibody complex
+ OBI:0001724:
+ text: OBI:0001724
+ description: A viral hemagglutination inhibition assay that detects the binding
+ of an antigen with an antibody.
+ meaning: OBI:0001724
+ title: viral hemagglutination inhibition assay measuring binding of a B cell
+ epitope:antibody complex
+ OBI:0001726:
+ text: OBI:0001726
+ description: A fluorescence quenching assay that detects the binding of an
+ antigen with an antibody.
+ meaning: OBI:0001726
+ title: quenching assay measuring binding of a B cell epitope:antibody complex
+ OBI:0001727:
+ text: OBI:0001727
+ description: A radio immuno assay that measures the dissociation constant
+ [KD] of an antigen binding with an antibody.
+ meaning: OBI:0001727
+ title: RIA measuring the dissociation constant [KD] of a B cell epitope:antibody
+ complex
+ OBI:0001728:
+ text: OBI:0001728
+ description: An enzyme-linked immunosorbent assay that measures the dissociation
+ constant [KD] of an antigen binding with an antibody.
+ meaning: OBI:0001728
+ title: ELISA measuring the dissociation constant [KD] of a B cell epitope:antibody
+ complex
+ OBI:0001729:
+ text: OBI:0001729
+ description: A fluorescence quenching assay that measures the dissociation
+ constant [KD] of an antigen binding with an antibody.
+ meaning: OBI:0001729
+ title: quenching assay measuring the dissociation constant [KD] of a B cell
+ epitope:antibody complex
+ OBI:0001730:
+ text: OBI:0001730
+ description: A surface plasmon resonance binding assay that measures the association
+ constant [KA] of an antigen binding with an antibody.
+ meaning: OBI:0001730
+ title: surface plasmon resonance assay measuring the association constant
+ [KA] of a B cell epitope:antibody complex
+ OBI:0001731:
+ text: OBI:0001731
+ description: A surface plasmon resonance binding assay that measures the dissociation
+ constant [KD] of an antigen binding with an antibody.
+ meaning: OBI:0001731
+ title: surface plasmon resonance assay measuring the dissociation constant
+ [KD] of a B cell epitope:antibody complex
+ OBI:0001732:
+ text: OBI:0001732
+ description: A fluorescence quenching assay that measures the association
+ constant [KA] of an antigen binding with an antibody.
+ meaning: OBI:0001732
+ title: quenching assay measuring the association constant [KA] of a B cell
+ epitope:antibody complex
+ OBI:0001733:
+ text: OBI:0001733
+ description: A calorimetric binding assay that measures the association constant
+ [KA] of an antigen binding with an antibody.
+ meaning: OBI:0001733
+ title: calorimetry assay measuring the association constant [KA] of a B cell
+ epitope:antibody complex
+ OBI:0001734:
+ text: OBI:0001734
+ description: A calorimetric binding assay that measures the dissociation constant
+ [KD] of an antigen binding with an antibody.
+ meaning: OBI:0001734
+ title: calorimetry assay measuring the dissociation constant [KD] of a B cell
+ epitope:antibody complex
+ OBI:0001735:
+ text: OBI:0001735
+ description: An enzyme-linked immunosorbent assay that measures the association
+ constant [KA] of an antigen binding with an antibody.
+ meaning: OBI:0001735
+ title: ELISA measuring the association constant [KA] of a B cell epitope:antibody
+ complex
+ OBI:0001736:
+ text: OBI:0001736
+ description: A radio immuno assay that measures the association constant [KA]
+ of an antigen binding with an antibody.
+ meaning: OBI:0001736
+ title: RIA measuring the association constant [KA] of a B cell epitope:antibody
+ complex
+ OBI:0001738:
+ text: OBI:0001738
+ description: A X-ray crystallography 3D molecular structure determination
+ assay that characterizes the 3-dimensional molecular structrue of a B cell
+ epitope:antibody complex.
+ meaning: OBI:0001738
+ title: X-ray crystallography assay determining the 3D structure of a B cell
+ epitope:antibody complex
+ OBI:0001739:
+ text: OBI:0001739
+ description: A surface plasmon resonance binding assay that measures the off
+ rate [koff] of an antigen binding with an antibody.
+ meaning: OBI:0001739
+ title: surface plasmon resonance assay measuring the off rate [koff] of a
+ B cell epitope:antibody complex
+ OBI:0001740:
+ text: OBI:0001740
+ description: A fluorescence quenching assay that measures the off rate [koff]
+ of an antigen binding with an antibody.
+ meaning: OBI:0001740
+ title: quenching assay measuring the off rate [koff] of a B cell epitope:antibody
+ complex
+ OBI:0001741:
+ text: OBI:0001741
+ description: A surface plasmon resonance binding assay that measures the on
+ rate [kon] of an antigen binding with an antibody.
+ meaning: OBI:0001741
+ title: surface plasmon resonance assay measuring the on rate [kon] of a B
+ cell epitope:antibody complex
+ OBI:0001742:
+ text: OBI:0001742
+ description: A fluorescence quenching assay that measures the on rate [kon]
+ of an antigen binding with an antibody.
+ meaning: OBI:0001742
+ title: quenching assay measuring the on rate [kon] of a B cell epitope:antibody
+ complex
+ OBI:0001743:
+ text: OBI:0001743
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-1 beta production by T cells.
+ meaning: OBI:0001743
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-1 beta production by T cells
+ OBI:0001744:
+ text: OBI:0001744
+ description: A flow cytometry assay that detects interleukin-1 alpha production
+ by T cells.
+ meaning: OBI:0001744
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-1
+ alpha production by T cells
+ OBI:0001745:
+ text: OBI:0001745
+ description: An enzyme-linked immunospot assay that detects interleukin-1
+ alpha production by T cells.
+ meaning: OBI:0001745
+ title: ELISPOT assay measuring epitope specific interleukin-1 alpha production
+ by T cells
+ OBI:0001746:
+ text: OBI:0001746
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-1 alpha production by T cells.
+ meaning: OBI:0001746
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-1 alpha production by T cells
+ OBI:0001747:
+ text: OBI:0001747
+ description: A cytometric bead array assay that detects interleukin-1 alpha
+ production by T cells.
+ meaning: OBI:0001747
+ title: cytometric bead array assay measuring epitope specific interleukin-1
+ alpha production by T cells
+ OBI:0001748:
+ text: OBI:0001748
+ description: An enzyme-linked immunospot assay that detects interferon-beta
+ production by T cells.
+ meaning: OBI:0001748
+ title: ELISPOT assay measuring epitope specific interferon-beta production
+ by T cells
+ OBI:0001749:
+ text: OBI:0001749
+ description: A flow cytometry assay that detects interferon-beta production
+ by T cells.
+ meaning: OBI:0001749
+ title: intracellular cytokine staining assay measuring epitope specific interferon-beta
+ production by T cells
+ OBI:0001750:
+ text: OBI:0001750
+ description: A flow cytometry assay that detects granulocyte colony stimulating
+ factor production by T cells.
+ meaning: OBI:0001750
+ title: intracellular cytokine staining assay measuring epitope specific granulocyte
+ colony stimulating factor production by T cells
+ OBI:0001751:
+ text: OBI:0001751
+ description: An enzyme-linked immunosorbent assay that detects interferon-beta
+ production by T cells.
+ meaning: OBI:0001751
+ title: ELISA measuring epitope specific interferon-beta production by T cells
+ OBI:0001752:
+ text: OBI:0001752
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects granulocyte colony stimulating factor production by
+ T cells.
+ meaning: OBI:0001752
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific granulocyte colony stimulating factor production
+ by T cells
+ OBI:0001753:
+ text: OBI:0001753
+ description: An enzyme-linked immunospot assay that detects granulocyte colony
+ stimulating factor production by T cells.
+ meaning: OBI:0001753
+ title: ELISPOT assay measuring epitope specific granulocyte colony stimulating
+ factor production by T cells
+ OBI:0001754:
+ text: OBI:0001754
+ description: A cytometric bead array assay that detects chemokine (C-X-C motif)
+ ligand 9 production by T cells.
+ meaning: OBI:0001754
+ title: cytometric bead array assay measuring epitope specific chemokine (C-X-C
+ motif) ligand 9 production by T cells
+ OBI:0001756:
+ text: OBI:0001756
+ description: An enzyme-linked immunospot assay that detects chemokine (C-X-C
+ motif) ligand 9 production by T cells.
+ meaning: OBI:0001756
+ title: ELISPOT assay measuring epitope specific chemokine (C-X-C motif) ligand
+ 9 production by T cells
+ OBI:0001757:
+ text: OBI:0001757
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects chemokine (C-X-C motif) ligand 9 production by T cells.
+ meaning: OBI:0001757
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific chemokine (C-X-C motif) ligand 9 production by
+ T cells
+ OBI:0001758:
+ text: OBI:0001758
+ description: An enzyme-linked immunospot assay that detects chemokine (C-C
+ motif) ligand 4 production by T cells.
+ meaning: OBI:0001758
+ title: ELISPOT assay measuring epitope specific chemokine (C-C motif) ligand
+ 4 production by T cells
+ OBI:0001759:
+ text: OBI:0001759
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects chemokine (C-X-C motif) ligand 12 production by T cells.
+ meaning: OBI:0001759
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific chemokine (C-X-C motif) ligand 12 production
+ by T cells
+ OBI:0001760:
+ text: OBI:0001760
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects chemokine (C-X-C motif) ligand 13 production by T cells.
+ meaning: OBI:0001760
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific chemokine (C-X-C motif) ligand 13 production
+ by T cells
+ OBI:0001761:
+ text: OBI:0001761
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects chemokine (C-X-C motif) ligand 16 production by T cells.
+ meaning: OBI:0001761
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific chemokine (C-X-C motif) ligand 16 production
+ by T cells
+ OBI:0001762:
+ text: OBI:0001762
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects chemokine (C-C motif) ligand 21 production by T cells.
+ meaning: OBI:0001762
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific chemokine (C-C motif) ligand 21 production by
+ T cells
+ OBI:0001763:
+ text: OBI:0001763
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects chemokine (C-C motif) ligand 22 production by T cells.
+ meaning: OBI:0001763
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific chemokine (C-C motif) ligand 22 production by
+ T cells
+ OBI:0001764:
+ text: OBI:0001764
+ description: A cytometric bead array assay that detects chemokine (C-C motif)
+ ligand 4 production by T cells.
+ meaning: OBI:0001764
+ title: cytometric bead array assay measuring epitope specific chemokine (C-C
+ motif) ligand 4 production by T cells
+ OBI:0001765:
+ text: OBI:0001765
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects chemokine (C-C motif) ligand 4 production by T cells.
+ meaning: OBI:0001765
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific chemokine (C-C motif) ligand 4 production by
+ T cells
+ OBI:0001766:
+ text: OBI:0001766
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects vascular endothelial growth factor production by T cells.
+ meaning: OBI:0001766
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific vascular endothelial growth factor production
+ by T cells
+ OBI:0001767:
+ text: OBI:0001767
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects chemokine (C-C motif) ligand 19 production by T cells.
+ meaning: OBI:0001767
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific chemokine (C-C motif) ligand 19 production by
+ T cells
+ OBI:0001768:
+ text: OBI:0001768
+ description: A flow cytometry assay that detects chemokine (C-C motif) ligand
+ 1 production by T cells.
+ meaning: OBI:0001768
+ title: intracellular cytokine staining assay measuring epitope specific chemokine
+ (C-C motif) ligand 1 production by T cells
+ OBI:0001770:
+ text: OBI:0001770
+ description: A flow cytometry assay that detects vascular endothelial growth
+ factor production by T cells.
+ meaning: OBI:0001770
+ title: intracellular cytokine staining assay measuring epitope specific vascular
+ endothelial growth factor production by T cells
+ OBI:0001771:
+ text: OBI:0001771
+ description: An enzyme-linked immunospot assay that detects vascular endothelial
+ growth factor production by T cells.
+ meaning: OBI:0001771
+ title: ELISPOT assay measuring epitope specific vascular endothelial growth
+ factor production by T cells
+ OBI:0001772:
+ text: OBI:0001772
+ description: An assay of epitope specific interleukin-17 production by T cells
+ that detects interleukin-17F production.
+ meaning: OBI:0001772
+ title: assay measuring epitope specific interleukin-17F production by T cells
+ OBI:0001773:
+ text: OBI:0001773
+ description: An assay of epitope specific interleukin-17 production by T cells
+ that detects interleukin-17A production.
+ meaning: OBI:0001773
+ title: assay measuring epitope specific interleukin-17A production by T cells
+ OBI:0001774:
+ text: OBI:0001774
+ description: A T cell epitope specific cytokine production assay that detects
+ chemokine (C-C motif) ligand 21 production by T cells.
+ meaning: OBI:0001774
+ title: assay measuring epitope specific chemokine (C-C motif) ligand 21 production
+ by T cells
+ OBI:0001775:
+ text: OBI:0001775
+ description: A T cell epitope specific cytokine production assay that detects
+ chemokine (C-C motif) ligand 19 production by T cells.
+ meaning: OBI:0001775
+ title: assay measuring epitope specific chemokine (C-C motif) ligand 19 production
+ by T cells
+ OBI:0001776:
+ text: OBI:0001776
+ description: A T cell epitope specific cytokine production assay that detects
+ chemokine (C-X-C motif) ligand 12 production by T cells.
+ meaning: OBI:0001776
+ title: assay measuring epitope specific chemokine (C-X-C motif) ligand 12
+ production by T cells
+ OBI:0001777:
+ text: OBI:0001777
+ description: A T cell epitope specific cytokine production assay that detects
+ chemokine (C-C motif) ligand 22 production by T cells.
+ meaning: OBI:0001777
+ title: assay measuring epitope specific chemokine (C-C motif) ligand 22 production
+ by T cells
+ OBI:0001778:
+ text: OBI:0001778
+ description: A T cell epitope specific cytokine production assay that detects
+ chemokine (C-X-C motif) ligand 16 production by T cells.
+ meaning: OBI:0001778
+ title: assay measuring epitope specific chemokine (C-X-C motif) ligand 16
+ production by T cells
+ OBI:0001779:
+ text: OBI:0001779
+ description: A T cell epitope specific cytokine production assay that detects
+ chemokine (C-X-C motif) ligand 13 production by T cells.
+ meaning: OBI:0001779
+ title: assay measuring epitope specific chemokine (C-X-C motif) ligand 13
+ production by T cells
+ OBI:0001780:
+ text: OBI:0001780
+ description: An enzyme-linked immunospot assay that detects macrophage inflammatory
+ protein-1 alpha production by T cells.
+ meaning: OBI:0001780
+ title: ELISPOT assay measuring epitope specific macrophage inflammatory protein-1
+ alpha production by T cells
+ OBI:0001781:
+ text: OBI:0001781
+ description: A cytometric bead array assay that detects macrophage inflammatory
+ protein-1 gamma production by T cells.
+ meaning: OBI:0001781
+ title: cytometric bead array assay measuring epitope specific macrophage inflammatory
+ protein-1 gamma production by T cells
+ OBI:0001782:
+ text: OBI:0001782
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects macrophage inflammatory protein-1 gamma production by
+ T cells.
+ meaning: OBI:0001782
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific macrophage inflammatory protein-1 gamma production
+ by T cells
+ OBI:0001783:
+ text: OBI:0001783
+ description: A flow cytometry assay that detects monocyte chemotactic protein-1
+ production by T cells.
+ meaning: OBI:0001783
+ title: intracellular cytokine staining assay measuring epitope specific monocyte
+ chemotactic protein-1 production by T cells
+ OBI:0001784:
+ text: OBI:0001784
+ description: An enzyme-linked immunospot assay that detects monocyte chemotactic
+ protein-1 production by T cells.
+ meaning: OBI:0001784
+ title: ELISPOT assay measuring epitope specific monocyte chemotactic protein-1
+ production by T cells
+ OBI:0001785:
+ text: OBI:0001785
+ description: A flow cytometry assay that detects macrophage inflammatory protein-1
+ gamma production by T cells.
+ meaning: OBI:0001785
+ title: intracellular cytokine staining assay measuring epitope specific macrophage
+ inflammatory protein-1 gamma production by T cells
+ OBI:0001786:
+ text: OBI:0001786
+ description: An enzyme-linked immunospot assay that detects inflammatory protein-1
+ gamma production by T cells.
+ meaning: OBI:0001786
+ title: ELISPOT assay measuring epitope specific macrophage inflammatory protein-1
+ gamma production by T cells
+ OBI:0001787:
+ text: OBI:0001787
+ description: A cytometric bead array assay that detects vascular endothelial
+ growth factor production by T cells.
+ meaning: OBI:0001787
+ title: cytometric bead array assay measuring epitope specific vascular endothelial
+ growth factor production by T cells
+ OBI:0001788:
+ text: OBI:0001788
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects tumor necrosis factor superfamily cytokine production
+ by T cells.
+ meaning: OBI:0001788
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific tumor necrosis factor superfamily cytokine production
+ by T cells
+ OBI:0001789:
+ text: OBI:0001789
+ description: A flow cytometry assay that detects RANTES production by T cells.
+ meaning: OBI:0001789
+ title: intracellular cytokine staining assay measuring epitope specific RANTES
+ production by T cells
+ OBI:0001790:
+ text: OBI:0001790
+ description: An enzyme-linked immunospot assay that detects RANTES production
+ by T cells.
+ meaning: OBI:0001790
+ title: ELISPOT assay measuring epitope specific RANTES production by T cells
+ OBI:0001791:
+ text: OBI:0001791
+ description: An enzyme-linked immunospot assay that detects lymphotoxin A
+ production by T cells.
+ meaning: OBI:0001791
+ title: ELISPOT assay measuring epitope specific lymphotoxin A production by
+ T cells
+ OBI:0001792:
+ text: OBI:0001792
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects macrophage inflammatory protein-1 alpha production by
+ T cells.
+ meaning: OBI:0001792
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific macrophage inflammatory protein-1 alpha production
+ by T cells
+ OBI:0001793:
+ text: OBI:0001793
+ description: A cytometric bead array assay that detects lymphotoxin A production
+ by T cells.
+ meaning: OBI:0001793
+ title: cytometric bead array assay measuring epitope specific lymphotoxin
+ A production by T cells
+ OBI:0001794:
+ text: OBI:0001794
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects lymphotoxin A production by T cells.
+ meaning: OBI:0001794
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific lymphotoxin A production by T cells
+ OBI:0001795:
+ text: OBI:0001795
+ description: An enzyme-linked immunospot assay that detects IP-10 production
+ by T cells.
+ meaning: OBI:0001795
+ title: ELISPOT assay measuring epitope specific IP-10 production by T cells
+ OBI:0001796:
+ text: OBI:0001796
+ description: A flow cytometry assay that detects IP-10 production by T cells.
+ meaning: OBI:0001796
+ title: intracellular cytokine staining assay measuring epitope specific IP-10
+ production by T cells
+ OBI:0001797:
+ text: OBI:0001797
+ description: An enzyme-linked immunospot assay that detects interleukin-9
+ production by T cells.
+ meaning: OBI:0001797
+ title: ELISPOT assay measuring epitope specific interleukin-9 production by
+ T cells
+ OBI:0001798:
+ text: OBI:0001798
+ description: A flow cytometry assay that detects interleukin-9 production
+ by T cells.
+ meaning: OBI:0001798
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-9
+ production by T cells
+ OBI:0001799:
+ text: OBI:0001799
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-9 production by T cells.
+ meaning: OBI:0001799
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-9 production by T cells
+ OBI:0001800:
+ text: OBI:0001800
+ description: An enzyme-linked immunospot assay that detects interleukin-8
+ production by T cells.
+ meaning: OBI:0001800
+ title: ELISPOT assay measuring epitope specific interleukin-8 production by
+ T cells
+ OBI:0001801:
+ text: OBI:0001801
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-8 production by T cells.
+ meaning: OBI:0001801
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-8 production by T cells
+ OBI:0001802:
+ text: OBI:0001802
+ description: An enzyme-linked immunospot assay that detects interleukin-3
+ production by T cells.
+ meaning: OBI:0001802
+ title: ELISPOT assay measuring epitope specific interleukin-3 production by
+ T cells
+ OBI:0001803:
+ text: OBI:0001803
+ description: An enzyme-linked immunosorbent assay that detects interleukin-7
+ production by T cells.
+ meaning: OBI:0001803
+ title: ELISA measuring epitope specific interleukin-7 production by T cells
+ OBI:0001804:
+ text: OBI:0001804
+ description: An enzyme-linked immunospot assay that detects interleukin-7
+ production by T cells.
+ meaning: OBI:0001804
+ title: ELISPOT assay measuring epitope specific interleukin-7 production by
+ T cells
+ OBI:0001805:
+ text: OBI:0001805
+ description: A flow cytometry assay that detects interleukin-7 production
+ by T cells.
+ meaning: OBI:0001805
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-7
+ production by T cells
+ OBI:0001806:
+ text: OBI:0001806
+ description: A flow cytometry assay that detects interleukin-27 production
+ by T cells.
+ meaning: OBI:0001806
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-27
+ production by T cells
+ OBI:0001807:
+ text: OBI:0001807
+ description: A cytometric bead array assay that detects interleukin-3 production
+ by T cells.
+ meaning: OBI:0001807
+ title: cytometric bead array assay measuring epitope specific interleukin-3
+ production by T cells
+ OBI:0001808:
+ text: OBI:0001808
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-3 production by T cells.
+ meaning: OBI:0001808
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-3 production by T cells
+ OBI:0001809:
+ text: OBI:0001809
+ description: A T cell epitope specific cytotoxic T cell degranulation assay
+ that detects granzyme A release by T cells.
+ meaning: OBI:0001809
+ title: assay measuring epitope specific granzyme A release by T cells
+ OBI:0001810:
+ text: OBI:0001810
+ description: A T cell epitope specific cytotoxic T cell degranulation assay
+ that detects granulysin release by T cells.
+ meaning: OBI:0001810
+ title: assay measuring epitope specific granulysin release by T cells
+ OBI:0001811:
+ text: OBI:0001811
+ description: A cytometric bead array assay that detects interleukin-27 production
+ by T cells.
+ meaning: OBI:0001811
+ title: cytometric bead array assay measuring epitope specific interleukin-27
+ production by T cells
+ OBI:0001812:
+ text: OBI:0001812
+ description: A flow cytometry assay that detects interleukin-23 production
+ by T cells.
+ meaning: OBI:0001812
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-23
+ production by T cells
+ OBI:0001813:
+ text: OBI:0001813
+ description: An enzyme-linked immunospot assay that detects interleukin-27
+ production by T cells.
+ meaning: OBI:0001813
+ title: ELISPOT assay measuring epitope specific interleukin-27 production
+ by T cells
+ OBI:0001814:
+ text: OBI:0001814
+ description: An enzyme-linked immunosorbent assay that detects interleukin-27
+ production by T cells.
+ meaning: OBI:0001814
+ title: ELISA measuring epitope specific interleukin-27 production by T cells
+ OBI:0001815:
+ text: OBI:0001815
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-18 production by T cells.
+ meaning: OBI:0001815
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-18 production by T cells
+ OBI:0001817:
+ text: OBI:0001817
+ description: An enzyme-linked immunospot assay that detects interleukin-18
+ production by T cells.
+ meaning: OBI:0001817
+ title: ELISPOT assay measuring epitope specific interleukin-18 production
+ by T cells
+ OBI:0001821:
+ text: OBI:0001821
+ description: An enzyme-linked immunospot assay that detects interleukin-22
+ production by T cells.
+ meaning: OBI:0001821
+ title: ELISPOT assay measuring epitope specific interleukin-22 production
+ by T cells
+ OBI:0001822:
+ text: OBI:0001822
+ description: An enzyme-linked immunospot assay that detects interleukin-23
+ production by T cells.
+ meaning: OBI:0001822
+ title: ELISPOT assay measuring epitope specific interleukin-23 production
+ by T cells
+ OBI:0001824:
+ text: OBI:0001824
+ description: A flow cytometry assay that detects interleukin-18 production
+ by T cells.
+ meaning: OBI:0001824
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-18
+ production by T cells
+ OBI:0001826:
+ text: OBI:0001826
+ description: An enzyme-linked immunospot assay that detects interleukin-21
+ production by T cells.
+ meaning: OBI:0001826
+ title: ELISPOT assay measuring epitope specific interleukin-21 production
+ by T cells
+ OBI:0001827:
+ text: OBI:0001827
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects chemokine (C-C motif) ligand 1 production by T cells.
+ meaning: OBI:0001827
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific chemokine (C-C motif) ligand 1 production by
+ T cells
+ OBI:0001828:
+ text: OBI:0001828
+ description: A cytometric bead array assay that detects chemokine (C-C motif)
+ ligand 1 production by T cells.
+ meaning: OBI:0001828
+ title: cytometric bead array assay measuring epitope specific chemokine (C-C
+ motif) ligand 1 production by T cells
+ OBI:0001829:
+ text: OBI:0001829
+ description: An enzyme-linked immunospot assay that detects chemokine (C-C
+ motif) ligand 1 production by T cells.
+ meaning: OBI:0001829
+ title: ELISPOT assay measuring epitope specific chemokine (C-C motif) ligand
+ 1 production by T cells
+ OBI:0001830:
+ text: OBI:0001830
+ description: An enzyme-linked immunospot assay that detects interleukin-17F
+ production by T cells.
+ meaning: OBI:0001830
+ title: ELISPOT assay measuring epitope specific interleukin-17F production
+ by T cells
+ OBI:0001831:
+ text: OBI:0001831
+ description: An enzyme-linked immunosorbent assay that detects interleukin-17F
+ production by T cells.
+ meaning: OBI:0001831
+ title: ELISA measuring epitope specific interleukin-17F production by T cells
+ OBI:0001832:
+ text: OBI:0001832
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-17F production by T cells.
+ meaning: OBI:0001832
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-17F production by T cells
+ OBI:0001833:
+ text: OBI:0001833
+ description: An enzyme-linked immunospot assay that detects interleukin-17A
+ production by T cells.
+ meaning: OBI:0001833
+ title: ELISPOT assay measuring epitope specific interleukin-17A production
+ by T cells
+ OBI:0001835:
+ text: OBI:0001835
+ description: A cytometric bead array assay that detects interleukin-18 production
+ by T cells.
+ meaning: OBI:0001835
+ title: cytometric bead array assay measuring epitope specific interleukin-18
+ production by T cells
+ OBI:0001836:
+ text: OBI:0001836
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-16 production by T cells.
+ meaning: OBI:0001836
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-16 production by T cells
+ OBI:0001837:
+ text: OBI:0001837
+ description: An enzyme-linked immunosorbent assay that detects interleukin-16
+ production by T cells.
+ meaning: OBI:0001837
+ title: ELISA measuring epitope specific interleukin-16 production by T cells
+ OBI:0001838:
+ text: OBI:0001838
+ description: An enzyme-linked immunospot assay that detects interleukin-16
+ production by T cells.
+ meaning: OBI:0001838
+ title: ELISPOT assay measuring epitope specific interleukin-16 production
+ by T cells
+ OBI:0001839:
+ text: OBI:0001839
+ description: A flow cytometry assay that detects interleukin-16 production
+ by T cells.
+ meaning: OBI:0001839
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-16
+ production by T cells
+ OBI:0001840:
+ text: OBI:0001840
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-17A production by T cells.
+ meaning: OBI:0001840
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-17A production by T cells
+ OBI:0001841:
+ text: OBI:0001841
+ description: A flow cytometry assay that detects interleukin-1 beta production
+ by T cells.
+ meaning: OBI:0001841
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-1
+ beta production by T cells
+ OBI:0001842:
+ text: OBI:0001842
+ description: An enzyme-linked immunospot assay that detects interleukin-1
+ beta production by T cells.
+ meaning: OBI:0001842
+ title: ELISPOT assay measuring epitope specific interleukin-1 beta production
+ by T cells
+ OBI:0001843:
+ text: OBI:0001843
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-15 production by T cells.
+ meaning: OBI:0001843
+ title: detection of specific nucleic acids with complementary probes measuring
+ epitope specific interleukin-15 production by T cells
+ OBI:0001844:
+ text: OBI:0001844
+ description: An enzyme-linked immunospot assay that detects interleukin-12
+ production by T cells.
+ meaning: OBI:0001844
+ title: ELISPOT assay measuring epitope specific interleukin-12 production
+ by T cells
+ OBI:0001845:
+ text: OBI:0001845
+ description: A flow cytometry assay that detects interleukin-15 production
+ by T cells.
+ meaning: OBI:0001845
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-15
+ production by T cells
+ OBI:0001846:
+ text: OBI:0001846
+ description: An enzyme-linked immunospot assay that detects interleukin-15
+ production by T cells.
+ meaning: OBI:0001846
+ title: ELISPOT assay measuring epitope specific interleukin-15 production
+ by T cells
+ OBI:0001848:
+ text: OBI:0001848
+ description: An assay that incorporates chromatin immunoprecipitation (ChIP)-based
+ enrichment, chromatin proximity ligation, Paired-End Tags, and high-throughput
+ sequencing to determine de novo long-range chromatin interactions genome-wide.
+ meaning: OBI:0001848
+ title: chromatin interaction analysis by paired-end tag sequencing assay
+ OBI:0001849:
+ text: OBI:0001849
+ description: An assay that incorporates Paired-End Tags and sequencing technology
+ to determine structural variants.
+ meaning: OBI:0001849
+ title: structural analysis by paired-end tag sequencing assay
+ OBI:0001850:
+ text: OBI:0001850
+ description: A transcription profiling by RNA sequencing assay that employs
+ paired-end sequencing of RNA transcripts to determine things such as gene
+ expression, gene structure, and alternative transcript structure.
+ meaning: OBI:0001850
+ title: transcript analysis by paired-end tag sequencing assay
+ OBI:0001853:
+ text: OBI:0001853
+ description: An assay that identifies the location of regulatory regions,
+ based on the genome-wide sequencing of regions super sensitive to cleavage
+ by DNase I.
+ meaning: OBI:0001853
+ title: DNase I hypersensitive sites sequencing assay
+ OBI:0001857:
+ text: OBI:0001857
+ description: An analyte assay that combines immunoprecipitation of an RNA-binding
+ protein and RNA-seq to identify mRNAs associated with selected RNA binding
+ proteins (RBPs).
+ meaning: OBI:0001857
+ title: RNP (ribonuclear particle) immunoprecipitation high- throughput sequencing
+ assay
+ OBI:0001858:
+ text: OBI:0001858
+ description: An analyte assay that employs UV-crosslinking between RNA and
+ a protein, followed by immunoprecipitation with antibodies for the protein,
+ fragmentation, and high-throughput screening for RNA sequences that interact
+ with a particular RNA-binding protein.
+ meaning: OBI:0001858
+ title: cross-linking immunoprecipitation high-throughput sequencing assay
+ OBI:0001859:
+ text: OBI:0001859
+ description: An assay to determine the sequences of those DNA regions in the
+ genome associated with regulatory activity.
+ meaning: OBI:0001859
+ title: formaldehyde-assisted isolation of regulatory elements assay
+ OBI:0001861:
+ text: OBI:0001861
+ description: An assay that identifies unmethylated CpGs using methylation
+ sensitive restriction enzymes to fragment DNA.
+ meaning: OBI:0001861
+ title: methylation-sensitive restriction enzyme sequencing assay
+ OBI:0001862:
+ text: OBI:0001862
+ description: A bisulfite sequencing assay that identifies genomic methylation
+ patterns using a bisulfite based protocol that enriches CG-rich parts of
+ the genome.
+ meaning: OBI:0001862
+ title: reduced representation bisulfite sequencing assay
+ OBI:0001863:
+ text: OBI:0001863
+ description: A bisulfite sequencing assay that identifies methylated cytosines
+ across the genome using high throughput sequencing.
+ meaning: OBI:0001863
+ title: shotgun bisulfite-seq assay
+ OBI:0001864:
+ text: OBI:0001864
+ description: A transcription profiling by RNA sequencing assay that identifies
+ transcription start sites (TSS), the quantification of their expression
+ and the characterization of their transcripts using high throughput sequencing.
+ meaning: OBI:0001864
+ title: RNA Annotation and Mapping of Promoters for the Analysis of Gene Expression
+ assay
+ OBI:0001915:
+ text: OBI:0001915
+ description: An assay which quantifies the timing of DNA replication as a
+ function of genome position using array technology.
+ meaning: OBI:0001915
+ title: DNA replication timing by array assay
+ OBI:0001918:
+ text: OBI:0001918
+ description: An assay that combines immunoprecipitation of an RNA-binding
+ protein and array technology to identify mRNAs associated with selected
+ RNA binding proteins (RBPs).
+ meaning: OBI:0001918
+ title: RNA-binding protein immunoprecipitation array profiling assay
+ OBI:0001919:
+ text: OBI:0001919
+ description: An assay that measures the organization of chromosomes at the
+ genome-wide scale.
+ meaning: OBI:0001919
+ title: Carbon-copy chromosome conformation capture assay
+ OBI:0001920:
+ text: OBI:0001920
+ description: An assay in which timing of DNA replication is quantified as
+ a function of genome position based on genome-wide sequencing.
+ meaning: OBI:0001920
+ title: DNA replication timing by sequencing assay
+ OBI:0001921:
+ text: OBI:0001921
+ description: An RNA-binding protein immunoprecipitation array profiling assay
+ that combines immunoprecipitation of an RNA-binding protein and RNA tiling
+ array to identify mRNAs associated with selected RNA binding proteins (RBPs).
+ meaning: OBI:0001921
+ title: RNA-binding protein immunoprecipitation tiling array profiling assay
+ OBI:0001922:
+ text: OBI:0001922
+ description: A microRNA profiling assay that analyzes the microRNA component
+ of the transcriptome using high throughput sequencing technology.
+ meaning: OBI:0001922
+ title: microRNA profiling by high throughput sequencing assay
+ OBI:0001923:
+ text: OBI:0001923
+ description: A sequencing assay that detremines amino acid sequences of proteins
+ using multiple rounds of mass spectrometry and molecule fragmentation.
+ meaning: OBI:0001923
+ title: protein sequencing by tandem mass spectrometry assay
+ OBI:0001924:
+ text: OBI:0001924
+ description: An assay that identifies nucleosome positioning by genome wide
+ sequencing of regions sensitive to digestion by micrococal nuclease
+ meaning: OBI:0001924
+ title: micrococcal nuclease digestion followed by high throughput sequencing
+ assay
+ OBI:0001925:
+ text: OBI:0001925
+ description: A ChIP-seq assay which uses immunoprecipitation to isolate protein
+ bound DNA followed by an exonuclease step to degrade DNA that is not protein
+ bound to provide greater resolution of the DNA binding site
+ meaning: OBI:0001925
+ title: chromatin immunoprecipitation with exonuclease sequencing assay
+ OBI:0001926:
+ text: OBI:0001926
+ description: A transcription profiling assay that quantifies the microRNA
+ species within a biological sample.
+ meaning: OBI:0001926
+ title: microRNA profiling assay
+ OBI:0001954:
+ text: OBI:0001954
+ description: An assay in which portions of chromatin, the ordered and organized
+ complex of DNA and its interaction partners that make up a chormosome, is
+ extracted and purified by immunoprecipitation with antibodies or tags, and
+ subsequently analyzed
+ meaning: OBI:0001954
+ title: ChIP assay
+ OBI:0001956:
+ text: OBI:0001956
+ description: An assay that produces data about protein-DNA interaction or
+ DNA epigenetic modification using immunoprecipitation
+ meaning: OBI:0001956
+ title: assay using chromatin immunoprecipitation
+ OBI:0001960:
+ text: OBI:0001960
+ description: An assay that dteremines taxonomic and community diversity information
+ by sequencing specific genomic regions used as marker of identity or diversity.
+ meaning: OBI:0001960
+ title: taxonomic diversity assessment by targeted gene survey
+ OBI:0001976:
+ text: OBI:0001976
+ description: A footprinting assay that uses a chemical reaction whereby a
+ covalently bonded hydrogen atom is replaced by a deuterium atom, or vice
+ versa in order to gather information about the solvent accessibility of
+ parts of a molecule and thus its tertiary structure.
+ meaning: OBI:0001976
+ title: hydrogen/deuterium exchange footprinting assay
+ OBI:0001977:
+ text: OBI:0001977
+ description: An assay that counts and/or measures characteristics of cells.
+ meaning: OBI:0001977
+ title: cytometry assay
+ OBI:0001978:
+ text: OBI:0001978
+ description: An analyte assay that detects specific molecules in an input
+ material by separating it using gel electrophoresis, transfering the separated
+ molecules to a membrane, and staining them with_ antibodies specific to
+ the analyte molecules.
+ meaning: OBI:0001978
+ title: immunoblot assay
+ OBI:0001979:
+ text: OBI:0001979
+ description: A binding assay in which the proximity of two entities is monitored
+ by measuring a fluorescent signal of one of the entities that gets reduced
+ if the two entities are cliose to each other.
+ meaning: OBI:0001979
+ title: fluorescence quenching binding assay
+ OBI:0001980:
+ text: OBI:0001980
+ description: An assay in which the effect of a targeted process (the intervention)
+ on an organism is tested.
+ meaning: OBI:0001980
+ title: in vivo intervention experiment
+ OBI:0001981:
+ text: OBI:0001981
+ description: An in vivo intervention experiment that tests the ability of
+ the intervention to increase the severity of a disease in the host.
+ meaning: OBI:0001981
+ title: disease exacerbation in vivo intervention experiment
+ OBI:0001982:
+ text: OBI:0001982
+ description: An in vivo intervention experiment that tests the ability of
+ the intervention to prevent occurrence of a disease in a host.
+ meaning: OBI:0001982
+ title: protection from challenge in vivo intervention experiment
+ OBI:0001983:
+ text: OBI:0001983
+ description: An in vivo intervention experiment that tests the ability of
+ the intervention to decrease an immune response.
+ meaning: OBI:0001983
+ title: tolerance induction intervention experiment
+ OBI:0001984:
+ text: OBI:0001984
+ description: An in vivo intervention experiment in which the ability of the
+ intervention to reduce or cure the effects of a disease are tested.
+ meaning: OBI:0001984
+ title: treatment intervention experiment
+ OBI:0001985:
+ text: OBI:0001985
+ description: An analyte assay where binding of the analyte to immobilized
+ matrix is measured.
+ meaning: OBI:0001985
+ title: microarray assay
+ OBI:0001986:
+ text: OBI:0001986
+ description: An immunostaining assay to detect and potentially localize antigens
+ within the cells of a tissue section.
+ meaning: OBI:0001986
+ title: immunohistochemistry
+ OBI:0001987:
+ text: OBI:0001987
+ description: A MHC binding constant determination assay measuring equilibrium
+ association constant (KA).
+ meaning: OBI:0001987
+ title: assay measuring the association constant [KA] of a MHC:ligand complex
+ OBI:0001988:
+ text: OBI:0001988
+ description: A MHC binding constant determination assay measuring equilibrium
+ dissociation constant (KD).
+ meaning: OBI:0001988
+ title: assay measuring the dissociation constant [KD] of a MHC:ligand complex
+ OBI:0001989:
+ text: OBI:0001989
+ description: A radioactivity detection assay that measures equilibrium dissociation
+ constant (KD) to detect the loss of binding of a known reference ligand
+ to purified-MHC due to competition by the ligand under investigation.
+ meaning: OBI:0001989
+ title: radioactivity detection assay measuring equilibrium dissociation constant
+ [KD] to determine competitive binding of a purified-MHC:ligand complex
+ OBI:0001990:
+ text: OBI:0001990
+ description: A MHC binding constant determination assay measuring half life
+ of binding.
+ meaning: OBI:0001990
+ title: assay measuring the half life of a MHC:ligand complex
+ OBI:0001991:
+ text: OBI:0001991
+ description: A MHC binding constant determination assay measuring half maximal
+ effective concentration (EC50).
+ meaning: OBI:0001991
+ title: assay measuring the half maximal effective concentration [EC50] of
+ a MHC:ligand complex
+ OBI:0001992:
+ text: OBI:0001992
+ description: A MHC binding constant determination assay measuring half maximal
+ inhibitory concentration (IC50).
+ meaning: OBI:0001992
+ title: assay measuring the half maximal inhibitory concentration [IC50] of
+ a MHC:ligand complex
+ OBI:0001993:
+ text: OBI:0001993
+ description: A MHC binding constant determination assay measuring binding
+ off rate measurement data item (koff).
+ meaning: OBI:0001993
+ title: assay measuring the off rate measurement [koff] of a MHC:ligand complex
+ OBI:0001994:
+ text: OBI:0001994
+ description: A MHC binding constant determination assay measuring binding
+ on rate (kon).
+ meaning: OBI:0001994
+ title: assay measuring the MHC ligand binding on rate [kon] of a MHC:ligand
+ complex
+ OBI:0001995:
+ text: OBI:0001995
+ description: An analytical chromatography assay that measures the association
+ constant [KA] of an antigen binding with an antibody.
+ meaning: OBI:0001995
+ title: chromatography assay measuring the association constant [KA] of a B
+ cell epitope:antibody complex
+ OBI:0001996:
+ text: OBI:0001996
+ description: An analytical chromatography assay that measures the dissociation
+ constant [KD] of an antigen binding with an antibody.
+ meaning: OBI:0001996
+ title: chromatography assay measuring the dissociation constant [KD] of a
+ B cell epitope:antibody complex
+ OBI:0001997:
+ text: OBI:0001997
+ description: A hydrogen/deuterium exchange footprinting assay that detects
+ the binding of an antigen with an antibody.
+ meaning: OBI:0001997
+ title: hydrogen/deuterium exchange footprinting assay measuring binding of
+ a B cell epitope:antibody complex
+ OBI:0001998:
+ text: OBI:0001998
+ description: A immunohistochemistry assay that detects the binding of an antigen
+ with an antibody.
+ meaning: OBI:0001998
+ title: immunohistochemistry assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0001999:
+ text: OBI:0001999
+ description: A 3D structure determination of bound molecular complex assay
+ that characterizes the 3-dimensional structure of a T cell epitope:MHC:TCR
+ complex.
+ meaning: OBI:0001999
+ title: 3D molecular structure determination assay of a T cell epitope:MHC:TCR
+ complex
+ OBI:0002014:
+ text: OBI:0002014
+ description: An epigenetic modification assay that identifies sites of DNA
+ methylation using ChIP-chip technologies.
+ meaning: OBI:0002014
+ title: DNA methylation profiling by ChIP-chip assay
+ OBI:0002015:
+ text: OBI:0002015
+ description: A transcription profiling assay that uses Massive Parallel Signature
+ Sequencing (MPSS).
+ meaning: OBI:0002015
+ title: transcription profiling by MPSS assay
+ OBI:0002016:
+ text: OBI:0002016
+ description: An epigenetic modification assay that identifies regions containing
+ specific histones and their modifications using ChIP-chip techniques.
+ meaning: OBI:0002016
+ title: histone modification identification by ChIP-chip assay
+ OBI:0002017:
+ text: OBI:0002017
+ description: An epigenetic modification assay that identifies regions containing
+ specific histones and their modifications using ChIP-Seq techniques.
+ meaning: OBI:0002017
+ title: histone modification identification by ChIP-Seq assay
+ OBI:0002018:
+ text: OBI:0002018
+ description: A transcription factor binding site assay that utilizes ChIP-chip
+ technology.
+ meaning: OBI:0002018
+ title: transcription factor binding site identification by ChIP-chip assay
+ OBI:0002019:
+ text: OBI:0002019
+ description: A transcription factor binding site assay that utilizes ChIP-seq
+ technology.
+ meaning: OBI:0002019
+ title: transcription factor binding site identification by ChIP-Seq assay
+ OBI:0002020:
+ text: OBI:0002020
+ description: An assay that identifies epigenetic modifications including histone
+ modifications, open chromatin, and DNA methylation.
+ meaning: OBI:0002020
+ title: epigenetic modification assay
+ OBI:0002029:
+ text: OBI:0002029
+ description: A transcription profiling by RNA sequencing assay that quantifies
+ RNA through creating short signature tags of the messages and ligating them
+ into a larger molecule that is then sequenced.
+ meaning: OBI:0002029
+ title: serial analysis of gene expression assay
+ OBI:0002030:
+ text: OBI:0002030
+ description: A genotyping by array assay that uses tiling array technology.
+ meaning: OBI:0002030
+ title: genotyping by tiling array assay
+ OBI:0002031:
+ text: OBI:0002031
+ description: A genotyping by array assay that uses SNP array technology.
+ meaning: OBI:0002031
+ title: genotyping by SNP array assay
+ OBI:0002032:
+ text: OBI:0002032
+ description: A single-nucleotide-resolution nucleic acid structure mapping
+ assay that performs simultaneous in vitro profiling of the secondary structure
+ of thousands of RNA species at single nucleotide resolution using enzymatic
+ probing based on deep sequencing fragments of RNAs that were treated with
+ structure-specific enzymes
+ meaning: OBI:0002032
+ title: parallel analysis of RNA structure assay
+ OBI:0002033:
+ text: OBI:0002033
+ description: A translation profiling assay that combines transcript leader
+ sequencing with polysome fractionation. TATL-seq works by applying TL-seq
+ across fractions of a polysome gradient, generating TL-specific translational
+ measurements to identify how different transcript leader sequences effect
+ translation.
+ meaning: OBI:0002033
+ title: translation-associated transcript leader sequencing assay
+ OBI:0002034:
+ text: OBI:0002034
+ description: A transcription profiling by RNA sequencing assay that combines
+ enzymatic capture of m(7)G-capped mRNA 5' ends with high-throughput sequencing.
+ meaning: OBI:0002034
+ title: transcript leader sequencing assay
+ OBI:0002035:
+ text: OBI:0002035
+ description: A mass spectrometry assay that measures the absolute mass of
+ the cleaved peptides derived from an unknown protein of interest. These
+ masses are then compared to values for known protein sequences to identify
+ the unknown protein.
+ meaning: OBI:0002035
+ title: peptide mass fingerprinting assay
+ OBI:0002036:
+ text: OBI:0002036
+ description: An assay which aims to provide information about the in vivo
+ organization/structure of nucleic acids using chemical or enzymatic probes
+ using a microarray.
+ meaning: OBI:0002036
+ title: array based nucleic acid structure mapping assay
+ OBI:0002037:
+ text: OBI:0002037
+ description: An array based nucleic acid structure mapping assay that identifies
+ nucleosome positions genome wide, by detection of regions protected by nucleosomes
+ from digestion by micrococal nuclease using tiling array assays
+ meaning: OBI:0002037
+ title: micrococcal nuclease digestion followed by tiling array assay
+ OBI:0002038:
+ text: OBI:0002038
+ description: A translation profiling assay that sequences only mRNA protected
+ by the ribosome during translation and thus provides information on which
+ transcipts are undergoing active translation.
+ meaning: OBI:0002038
+ title: ribosomal profiling by sequencing assay
+ OBI:0002039:
+ text: OBI:0002039
+ description: An assay to capture the location of open chromatin, DNA-binding
+ proteins, individual nucleosomes and chromatin compaction at nucleotide
+ resolution by Tn5 transposase insertion.
+ meaning: OBI:0002039
+ title: assay for transposase-accessible chromatin using sequencing
+ OBI:0002040:
+ text: OBI:0002040
+ description: A detection of specific nucleic acids with complementary probes
+ assay that measures regions of the genome which are bound by a specific
+ RNA (or a by a ribonucleoprotein containing the RNA of interest) using high-throughput
+ sequencing.
+ meaning: OBI:0002040
+ title: chromatin isolation by RNA purification sequencing assay
+ OBI:0002041:
+ text: OBI:0002041
+ description: An assay that identifies the sequences that act as transcriptional
+ enhancers in a direct, quantitative, and genome-wide manner from sheared
+ genomic DNA.
+ meaning: OBI:0002041
+ title: self-transcribing active regulatory region sequencing assay
+ OBI:0002042:
+ text: OBI:0002042
+ description: A carbon-copy chromosome conformation capture assay to analyze
+ the organization of chromosomes in an unbiased, genome-wide manner using
+ high throughput sequening following carbon-copy chromosome conformation
+ capture.
+ meaning: OBI:0002042
+ title: carbon-copy chromosome conformation capture assay followed by sequencing
+ assay
+ OBI:0002043:
+ text: OBI:0002043
+ description: A cross-linking immunoprecipitation high-throughput sequencing
+ assay that identifies protein-RNA interactions using UV light to covalently
+ bind proteins and RNA molecules, allowing for a very stringent purification
+ of the linked protein-RNA complexes.
+ meaning: OBI:0002043
+ title: individual-nucleotide resolution cross-linking and immunoprecipitation
+ sequencing assay
+ OBI:0002044:
+ text: OBI:0002044
+ description: An assay that comprehensively characterizes sequence and structural
+ specificity of RNA binding proteins (RBPs).
+ meaning: OBI:0002044
+ title: RNA Bind-n-Seq assay
+ OBI:0002045:
+ text: OBI:0002045
+ description: A transcription profiling by RNA sequencing assay that quantitatively
+ profiles RNA polyadenylation at the transcriptome level.
+ meaning: OBI:0002045
+ title: polyA-site sequencing assay
+ OBI:0002050:
+ text: OBI:0002050
+ description: A 3D structure determination of bound molecular complex assay
+ that characterizes the 3-dimensional structure of a MHC:ligand complex.
+ meaning: OBI:0002050
+ title: 3D molecular structure determination assay of a MHC:ligand complex
+ OBI:0002051:
+ text: OBI:0002051
+ description: An in vivo assay measuring B cell epitope specific protection
+ from pathogen challenge using pathogen burden.
+ meaning: OBI:0002051
+ title: in vivo assay measuring B cell epitope specific protection from infectious
+ challenge based on pathogen burden
+ OBI:0002052:
+ text: OBI:0002052
+ description: An in vivo assay measuring B cell epitope specific protection
+ from tumor challenge using tumor burden.
+ meaning: OBI:0002052
+ title: in vivo assay measuring B cell epitope specific protection after tumor
+ burden challenge
+ OBI:0002053:
+ text: OBI:0002053
+ description: A microarray assay that detects the binding of an antigen with
+ an antibody.
+ meaning: OBI:0002053
+ title: microarray assay measuring binding of a B cell epitope:antibody complex
+ OBI:0002054:
+ text: OBI:0002054
+ description: A B cell epitope equilibrium dissociation constant (KD) determination
+ assay that uses a nuclear magnetic resonance assay.
+ meaning: OBI:0002054
+ title: NMR assay measuring the dissociation constant [KD] of a B cell epitope:antibody
+ complex
+ OBI:0002055:
+ text: OBI:0002055
+ description: A T cell epitope recognition assay that measures the immune response
+ process resulting from the binding of a T cell receptor to epitope or the
+ recongition of the epitope.
+ meaning: OBI:0002055
+ title: assay measuring biological activity resulting from T cell epitope:MHC:TCR
+ binding
+ OBI:0002056:
+ text: OBI:0002056
+ description: A T cell epitope specific cytokine production assay that detects
+ production of chemokine (C-C motif) ligand 17 production by T cells.
+ meaning: OBI:0002056
+ title: assay measuring epitope specific chemokine (C-C motif) ligand 17 production
+ by T cells
+ OBI:0002057:
+ text: OBI:0002057
+ description: A T cell epitope specific cytokine production assay that detects
+ macrophage migration inhibitory factor (MIF) production by T cells.
+ meaning: OBI:0002057
+ title: assay measuring epitope specific macrophage migration inhibitory factor
+ (MIF) production by T cells
+ OBI:0002058:
+ text: OBI:0002058
+ description: A T cell epitope specific cytokine production assay that detects
+ oncostatin M production by T cells.
+ meaning: OBI:0002058
+ title: assay measuring epitope specific oncostatin M production by T cells
+ OBI:0002059:
+ text: OBI:0002059
+ description: A T cell epitope recognition assay that quantitavely characterizes
+ the binding of a TCR with a ligand by determining a binding constant.
+ meaning: OBI:0002059
+ title: assay measuring a binding constant of a T cell epitope:MHC:TCR complex
+ OBI:0002060:
+ text: OBI:0002060
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects chemokine (C-C motif) ligand 17 production by T cells.
+ meaning: OBI:0002060
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific chemokine (C-C motif) ligand 17 production by
+ T cells
+ OBI:0002061:
+ text: OBI:0002061
+ description: A cytometric bead array assay that detects chemokine (C-C motif)
+ ligand 22 production by T cells.
+ meaning: OBI:0002061
+ title: cytometric bead array assay measuring epitope specific chemokine (C-C
+ motif) ligand 22 production by T cells
+ OBI:0002062:
+ text: OBI:0002062
+ description: An in vitro cell killing assay that measures the killing of antigen
+ presenting cells (APC) by T cells whose TCR recognizes an epitope presented
+ by the APC.
+ meaning: OBI:0002062
+ title: in vitro assay measuring epitope specific T cell killing
+ OBI:0002063:
+ text: OBI:0002063
+ description: A cytometric bead array assay that detects epitope specific granzyme
+ A release by T cells.
+ meaning: OBI:0002063
+ title: cytometric bead array assay measuring epitope specific granzyme A release
+ by T cells
+ OBI:0002064:
+ text: OBI:0002064
+ description: A detection of specific nucleic acids with complementary probes
+ assay that detects epitope specific granzyme A release by T cells.
+ meaning: OBI:0002064
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific granzyme A release by T cells
+ OBI:0002065:
+ text: OBI:0002065
+ description: A cytometric bead array assay that detects epitope specific granzyme
+ B release by T cells.
+ meaning: OBI:0002065
+ title: cytometric bead array assay measuring epitope specific granzyme B release
+ by T cells
+ OBI:0002066:
+ text: OBI:0002066
+ description: A detection of specific nucleic acids with complementary probes
+ assay that detects epitope specific granzyme B release by T cells
+ meaning: OBI:0002066
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific granzyme B release by T cells
+ OBI:0002067:
+ text: OBI:0002067
+ description: A cytometric bead array assay that detects macrophage migration
+ inhibitory factor (MIF) production by T cells.
+ meaning: OBI:0002067
+ title: cytometric bead array assay measuring epitope specific macrophage migration
+ inhibitory factor (MIF) production by T cells
+ OBI:0002068:
+ text: OBI:0002068
+ description: A cytometric bead array assay that detects oncostatin M production
+ by T cells.
+ meaning: OBI:0002068
+ title: cytometric bead array assay measuring epitope specific oncostatin M
+ production by T cells
+ OBI:0002069:
+ text: OBI:0002069
+ description: An enzyme-linked immunospot assay that detects epitope specific
+ perforin release by T cells.
+ meaning: OBI:0002069
+ title: ELISPOT assay measuring epitope specific perforin release by T cells
+ OBI:0002070:
+ text: OBI:0002070
+ description: A T cell epitope specific proliferation assay that is performed
+ in vivo.
+ meaning: OBI:0002070
+ title: in vivo assay measuring epitope specific proliferation of T cells
+ OBI:0002071:
+ text: OBI:0002071
+ description: A T cell epitope specific proliferation assay that is performed
+ on cells in vitro.
+ meaning: OBI:0002071
+ title: in vitro assay measuring epitope specific proliferation of T cells
+ OBI:0002072:
+ text: OBI:0002072
+ description: An assay that detects the binding of a MHC molecule with a ligand,
+ and produces a qualitative measurement of the binding as an output.
+ meaning: OBI:0002072
+ title: assay measuring qualitative binding of a MHC:ligand complex
+ OBI:0002073:
+ text: OBI:0002073
+ description: An efficacy of T cell epitope intervention experiment that uses
+ a epitope protection experiment.
+ meaning: OBI:0002073
+ title: in vivo assay measuring T cell epitope specific protection from challenge
+ OBI:0002074:
+ text: OBI:0002074
+ description: T cell epitope dependent biological activity assay that detects
+ suppression of an in vitro response.
+ meaning: OBI:0002074
+ title: assay measuring T cell epitope specific suppression in vitro
+ OBI:0002075:
+ text: OBI:0002075
+ description: An immune epitope assay that characterizes the structrue of a
+ MHC-ligand complex, or detects the processing and presentation of a ligand
+ by an antigen presenting cell, or the binding of a ligand to an MHC molecule.
+ meaning: OBI:0002075
+ title: MHC ligand assay
+ OBI:0002082:
+ text: OBI:0002082
+ description: An assay that detects expression of a reporter gene that was
+ inserted under the control of a regulatory sequence of interest.
+ meaning: OBI:0002082
+ title: reporter gene assay
+ OBI:0002083:
+ text: OBI:0002083
+ description: A reporter gene assay that detects expression of a reporter gene
+ that was inserted under the control of an enhancer of interest.
+ meaning: OBI:0002083
+ title: enhancer activity detection by reporter gene assay
+ OBI:0002084:
+ text: OBI:0002084
+ description: A ChIP-seq assay that identifies regions of chromatin bound to
+ a chromatin modifying protein, e.g. a histone acetyltransferase.
+ meaning: OBI:0002084
+ title: transcription cofactor activity region identification by ChIP-Seq assay
+ OBI:0002085:
+ text: OBI:0002085
+ description: An in situ hybridization assay in which the location (e.g. anatomical/tissue)
+ of a transcript is detected by a multiplexed fluorescent in situ hybridization,
+ based on orthogonal amplification with hybridization chain reactions (HCR).
+ RNA probes complementary to mRNA targets trigger chain reactions in which
+ fluorophore-labeled RNA hairpins self-assemble into tethered fluorescent
+ amplification polymers.
+ meaning: OBI:0002085
+ title: transcript expression location detection by hybridization chain reaction
+ assay
+ OBI:0002086:
+ text: OBI:0002086
+ description: A bisulfite sequencing assay that identifies genomic methylation
+ patterns by using a bisulfite based protocol with the Tet enzyme to differentiate
+ 5-hydroxylmethylcytosine (5hmC) from 5-methylcytosine (5mC) through a step-wise
+ oxidative demethylation of 5mC, converting it to 5-carboxylcytosine (5caC)
+ while keeping 5hmC protected.
+ meaning: OBI:0002086
+ title: Tet-assisted bisulfite sequencing assay
+ OBI:0002094:
+ text: OBI:0002094
+ description: A bisulfite sequencing assay in which a whole-genome sequencing
+ library is prepared, bisulfite converted and amplified, followed by a capture
+ enriching for targeted bisulfite-converted DNA fragments that are are subsequently
+ identified by DNA sequencing.
+ meaning: OBI:0002094
+ title: MethylC-Capture sequencing assay
+ OBI:0002096:
+ text: OBI:0002096
+ description: A CFSE assay that detects T cell epitope specific proliferation
+ in vitro.
+ meaning: OBI:0002096
+ title: carboxyfluorescein succinimidyl ester staining assay measuring epitope
+ specific proliferation of T cells
+ OBI:0002097:
+ text: OBI:0002097
+ description: A T cell epitope binding constant determination assay that measures
+ the dissociation constant KD.
+ meaning: OBI:0002097
+ title: assay measuring the dissociation constant [KD] of a T cell epitope:MHC:TCR
+ complex
+ OBI:0002098:
+ text: OBI:0002098
+ description: A T cell epitope binding constant determination assay that measures
+ the on rate.
+ meaning: OBI:0002098
+ title: assay measuring the on rate [kon] of a T cell epitope:MHC:TCR complex
+ OBI:0002099:
+ text: OBI:0002099
+ description: A T cell epitope binding constant determination assay that measures
+ the off rate.
+ meaning: OBI:0002099
+ title: assay measuring the off rate [koff] of a T cell epitope:MHC:TCR complex
+ OBI:0002100:
+ text: OBI:0002100
+ description: A T cell epitope binding constant determination assay that measures
+ the association constant KA.
+ meaning: OBI:0002100
+ title: assay measuring the association constant [KA] of a T cell epitope:MHC:TCR
+ complex
+ OBI:0002101:
+ text: OBI:0002101
+ description: A small-angle scattering 3D molecular structure determination
+ assay that characterizes the 3-dimensional molecular structure of a B cell
+ epitope:antibody complex
+ meaning: OBI:0002101
+ title: small-angle scattering assay determining the 3D structure of a B cell
+ epitope:antibody complex
+ OBI:0002102:
+ text: OBI:0002102
+ description: A bio-layer interferometry assay that measures the on rate of
+ an antigen with an antibody.
+ meaning: OBI:0002102
+ title: bio-layer interferometry assay measuring the on rate [kon] of a B cell
+ epitope:antibody complex
+ OBI:0002103:
+ text: OBI:0002103
+ description: A bio-layer interferometry assay that measures the off rate of
+ an antigen with an antibody.
+ meaning: OBI:0002103
+ title: bio-layer interferometry assay measuring the off rate [koff] of a B
+ cell epitope:antibody complex
+ OBI:0002104:
+ text: OBI:0002104
+ description: A bio-layer interferometry assay that detects the binding of
+ an antigen with an antibody.
+ meaning: OBI:0002104
+ title: bio-layer interferometry assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0002105:
+ text: OBI:0002105
+ description: A bio-layer interferometry assay that measures the dissociation
+ constant [KD] of an antigen with an antibody.
+ meaning: OBI:0002105
+ title: bio-layer interferometry assay measuring the dissociation constant
+ [KD] of a B cell epitope:antibody complex
+ OBI:0002106:
+ text: OBI:0002106
+ description: An assay using carboxyfluorescein succinimidyl ester staining.
+ meaning: OBI:0002106
+ title: carboxyfluorescein succinimidyl ester staining assay
+ OBI:0002107:
+ text: OBI:0002107
+ description: A binding assay that detects a shift in the interference pattern
+ reflected from a layer of immobilized material on the biosensor tip to measure
+ binding to- or dissociating from the material on the biosensor.
+ meaning: OBI:0002107
+ title: bio-layer interferometry assay
+ OBI:0002108:
+ text: OBI:0002108
+ description: A 3D molecular structure determination assay in which the scattering
+ pattern of a neutron or x-ray beam targeted at a material entity is recorded
+ at small angles relative to the incident beam to determine the size, shape
+ and structure of the material entity examined.
+ meaning: OBI:0002108
+ title: small-angle scattering 3D molecular structure determination assay
+ OBI:0002111:
+ text: OBI:0002111
+ description: An iCLIP assay that is enhanced to robustly identify protein-RNA
+ interactions with high efficiency through improvements in library preparation
+ of RNA fragments.
+ meaning: OBI:0002111
+ title: enhanced cross-linking immunoprecipitation high-throughput sequencing
+ assay
+ OBI:0002112:
+ text: OBI:0002112
+ description: A transcription profiling by RNA sequencing assay which is targeting
+ small RNA (< 200 bp) sequences such as, but not exclusive to, miRNAs using,
+ for example, small RNA library preparation kits.
+ meaning: OBI:0002112
+ title: small RNA sequencing assay
+ OBI:0002113:
+ text: OBI:0002113
+ description: A transcription profiling by RNA sequencing assay used to identify
+ spans of nascent transcription in the genome through isolation of recent
+ bromouridine (Bru) labelled RNAs.
+ meaning: OBI:0002113
+ title: bromouridine labeling and sequencing assay
+ OBI:0002114:
+ text: OBI:0002114
+ description: A transcription profiling by RNA sequencing assay used to identify
+ RNA populations of specific ages through isolation of RNAs first labelled
+ with bromouridine (Bru) followed by chasing in uridine for different periods
+ of time.
+ meaning: OBI:0002114
+ title: bromouridine pulse-chase and sequencing assay
+ OBI:0002115:
+ text: OBI:0002115
+ description: A cytometry assay in which the presence of molecules of interest
+ on or in cells is indicated by binding of antibodies labeled with rare earth
+ element tags which are detected by time-of-flight mass spectrometry.
+ meaning: OBI:0002115
+ title: cytometry time of flight assay
+ OBI:0002116:
+ text: OBI:0002116
+ description: An analytical chromatography assay that utilizes a high performance
+ liquid chromatography instrument for separation of compounts in a solution.
+ meaning: OBI:0002116
+ title: high performance liquid chromatography assay
+ OBI:0002117:
+ text: OBI:0002117
+ description: A DNA sequencing assay that intends to provide information about
+ the sequence of an entire genome of an organism.
+ meaning: OBI:0002117
+ title: whole genome sequencing assay
+ OBI:0002118:
+ text: OBI:0002118
+ description: A DNA sequencing assay that intends to provide information about
+ the sequence of the protein coding components of a genome (exons).
+ meaning: OBI:0002118
+ title: exome sequencing assay
+ OBI:0002119:
+ text: OBI:0002119
+ description: An imaging assay that utilizes a microscope to magnify features
+ of the visualized material of interest that are not visible to naked eye.
+ meaning: OBI:0002119
+ title: microscopy assay
+ OBI:0002120:
+ text: OBI:0002120
+ description: A cytometry assay where lymphocytes from two individuals are
+ co-cultured with the lymphocytes from one of the allogeneic individuals
+ (Responders) being labeled (with 3H Thymidine or BrdU) and the proliferation
+ of the labeled cells is measured, which is thought to reflect recognition
+ of histocompatibility antigens on the unlabeled cells (stimulators).
+ meaning: OBI:0002120
+ title: mixed lymphocyte reaction assay
+ OBI:0002121:
+ text: OBI:0002121
+ description: A genotyping assay in which the alleles of genes encoding for
+ killer cell immunoglobulin-like receptors are determined.
+ meaning: OBI:0002121
+ title: killer cell immunoglobulin-like receptor typing assay
+ OBI:0002122:
+ text: OBI:0002122
+ description: A genotyping assay in which the alleles of genes encoding for
+ major histocompatibility complex molecules are determined.
+ meaning: OBI:0002122
+ title: major histocompatibility typing assay
+ OBI:0002132:
+ text: OBI:0002132
+ description: An assay that detects differences in protein abundance using
+ samples that have been metabolically labeled in vivo with a stable non-radioactive
+ heavy isotope containing amino acid for a short period of time. After diluting
+ the pulsed cells into growth media without label, high resolution mass spectrometry-based
+ proteomics is used to analyze the time-dependent decay and determine protein
+ stability.
+ meaning: OBI:0002132
+ title: pulse stable isotope labeling by amino acids in cell culture
+ OBI:0002133:
+ text: OBI:0002133
+ description: A cytometric bead array assay that detects chemokine (C-C motif)
+ ligand 20 production by T cells.
+ meaning: OBI:0002133
+ title: cytometric bead array assay measuring epitope specific chemokine (C-C
+ motif) ligand 20 production by T cells
+ OBI:0002134:
+ text: OBI:0002134
+ description: A T cell epitope specific cytokine production assay that detects
+ chemokine (C-C motif) ligand 20 production by T cells.
+ meaning: OBI:0002134
+ title: assay measuring epitope specific chemokine (C-C motif) ligand 20 production
+ by T cells
+ OBI:0002140:
+ text: OBI:0002140
+ description: An assay to determine the temperature of an evaluant.
+ meaning: OBI:0002140
+ title: temperature measurement assay
+ OBI:0002141:
+ text: OBI:0002141
+ description: An assay to determine the volume of an evaluant.
+ meaning: OBI:0002141
+ title: volume measurement assay
+ OBI:0002142:
+ text: OBI:0002142
+ description: A microRNA profiling assay using digital molecular barcoding
+ technology to quantify target microRNA molecules without the need for amplification.
+ meaning: OBI:0002142
+ title: Nanostring nCounter miRNA expression assay
+ OBI:0002143:
+ text: OBI:0002143
+ description: A transcription profiling by RNA sequencing assay used to identify
+ transcription start sites and active enhancer elements through isolation
+ of bromouridine (Bru) labelled RNAs after UV light exposure introduces transcription-blocking
+ lesions.
+ meaning: OBI:0002143
+ title: bromouride labeling and sequencing after UV exposure
+ OBI:0002144:
+ text: OBI:0002144
+ description: An assay which aims at identifying the endogenous population
+ of extrachromosomal circular DNA originating from a subset of genomic loci
+ and potentially having profound consequences on the regulatory and coding
+ capabilities of these regions. The assay includes creation of a library
+ out of the circular DNA molecules and subsequent sequencing using parallelized
+ sequencing methods.
+ meaning: OBI:0002144
+ title: extrachromosomal circular DNA sequencing assay
+ OBI:0002145:
+ text: OBI:0002145
+ description: An analyte assay that measures the presence or amount of antibodies
+ to a specified antigen.
+ meaning: OBI:0002145
+ title: antigen specific antibodies assay
+ OBI:0002146:
+ text: OBI:0002146
+ description: An antigen specific antibodies assay that is meant to detect
+ antibodies that bind to human immunodeficiency virus (HIV) antigens.
+ meaning: OBI:0002146
+ title: HIV antibody assay
+ OBI:0002147:
+ text: OBI:0002147
+ description: An antigen specific antibodies assay that is meant to detect
+ antibodies that bind to human immunodeficiency virus (HIV) group O antigens.
+ meaning: OBI:0002147
+ title: HIV group O antibody assay
+ OBI:0002148:
+ text: OBI:0002148
+ description: An antigen specific antibodies assay that is meant to detect
+ antibodies that bind to hepatitis B virus (HBV) surface antigens.
+ meaning: OBI:0002148
+ title: surface HBV antibody assay
+ OBI:0002149:
+ text: OBI:0002149
+ description: An antigen specific antibodies assay that is meant to detect
+ antibodies that bind to hepatitis B virus (HBV) core antigens.
+ meaning: OBI:0002149
+ title: core HBV antibody assay
+ OBI:0002150:
+ text: OBI:0002150
+ description: An antigen specific antibodies assay that is meant to detectimmunoglobulin
+ M (IgM) antibodies that bind to hepatitis B virus (HBV) core antigens.
+ meaning: OBI:0002150
+ title: core HBV IgM antibody assay
+ OBI:0002151:
+ text: OBI:0002151
+ description: An antigen specific antibodies assay that is meant to detect
+ antibodies that bind to Hepacivirus C (HCV) antigens.
+ meaning: OBI:0002151
+ title: HCV antibody assay
+ OBI:0002152:
+ text: OBI:0002152
+ description: An antigen specific antibodies assay that is meant to detect
+ immunoglobulin G (IgG) antibodies that bind to Epstein-Barr virus (EBV)
+ antigens.
+ meaning: OBI:0002152
+ title: EBV IgG antibody assay
+ OBI:0002153:
+ text: OBI:0002153
+ description: An antigen specific antibodies assay that is meant to detect
+ immunoglobulin M (IgM) antibodies that bind to Epstein-Barr virus (EBV)
+ antigens.
+ meaning: OBI:0002153
+ title: EBV IgM antibody assay
+ OBI:0002154:
+ text: OBI:0002154
+ description: An antigen specific antibodies assay that is meant to detect
+ antibodies that bind to cytomegalovirus (CMV) antigens.
+ meaning: OBI:0002154
+ title: CMV antibody assay
+ OBI:0002155:
+ text: OBI:0002155
+ description: An analyte assay that is meant to detect general antibodies that
+ react with substances that are produced by cellular damage caused by Treponema
+ pallidum indicating a syphilis infection. VDRL tests require a microscope
+ and can be done on cerebrospinal fluid as well as blood.
+ meaning: OBI:0002155
+ title: venereal disease research laboratory test
+ OBI:0002156:
+ text: OBI:0002156
+ description: An analyte assay that is meant to detect with the aid of carbon
+ or charcoal particles general antibodies that react with substances that
+ are produced by cellular damage caused by Treponema pallidum indicating
+ a syphilis infection. RPR tests can be done without a microscope.
+ meaning: OBI:0002156
+ title: rapid plasma reagin test
+ OBI:0002157:
+ text: OBI:0002157
+ description: An analyte assay that is meant to detect hepatitis B virus (HBV)
+ surface antigens.
+ meaning: OBI:0002157
+ title: HBV surface antigen assay
+ OBI:0002158:
+ text: OBI:0002158
+ description: An analyte assay that is meant to detect human immunodeficiency
+ virus (HIV-1) nucleic acids.
+ meaning: OBI:0002158
+ title: HIV-1 nucleic acid testing
+ OBI:0002159:
+ text: OBI:0002159
+ description: An analyte assay that is meant to detect hepatitis C virus (HCV)
+ nucleic acids.
+ meaning: OBI:0002159
+ title: HCV nucleic acid testing
+ OBI:0002160:
+ text: OBI:0002160
+ description: A ChIP-seq assay which leverages T7 promoter amplification to
+ allow low sample input and chromatin barcoding and pool-and-split multiplexing
+ for high-throughput, quantitative profiling of chromatin states.
+ meaning: OBI:0002160
+ title: multiplexed indexed T7 ChIP-seq assay
+ OBI:0002161:
+ text: OBI:0002161
+ description: A binding assay that identifies protein-binding sites on nucleic
+ acids by selecting high-affinity target ligands from a randomized pool.
+ The process is repeated in rounds, then the bound nucleic acids are separated
+ from the unbound nucleic acids and amplified by PCR._
+ meaning: OBI:0002161
+ title: systematic evolution of ligands by exponential enrichment assay
+ OBI:0002162:
+ text: OBI:0002162
+ description: An assay that measures ligand binding and conformational changes
+ by the solvent accessibility of the backbone, bases, or side-chain structures
+ of macromolecules through their sensitivity to chemical or enzymatic cleavage
+ or modification reactions.
+ meaning: OBI:0002162
+ title: footprinting assay
+ OBI:0002163:
+ text: OBI:0002163
+ description: An enzymatic footprinting assay that determines protein-binding
+ sites on DNA by identifying bound fragments that are protected from DNAse
+ I-catalyzed hydrolysis
+ meaning: OBI:0002163
+ title: DNAse footprinting assay
+ OBI:0002164:
+ text: OBI:0002164
+ description: A binding assay that increases the expression of a reporter gene
+ in mammalian cells by proteins of interest attached to two portions of the
+ transcriptional activator, bringing those portions closer together.
+ meaning: OBI:0002164
+ title: mammalian 2-hybrid assay
+ OBI:0002165:
+ text: OBI:0002165
+ description: An assay that determines the specific location of a protein.
+ Subcellular localization is distinguished from tissue-based localization
+ based on the type of microscopy applied.
+ meaning: OBI:0002165
+ title: protein localization assay
+ OBI:0002166:
+ text: OBI:0002166
+ description: A protein localization assay that determines the specific location
+ of a protein in a living tissue sample.
+ meaning: OBI:0002166
+ title: tissue-based protein localization assay
+ OBI:0002167:
+ text: OBI:0002167
+ description: A protein localization assay that determines the specific subcellular
+ location of a protein. The location is visualized through electron microscopy.
+ meaning: OBI:0002167
+ title: subcellular protein localization assay
+ OBI:0002168:
+ text: OBI:0002168
+ description: An immunohistochemistry assay that uses antibodies to display
+ the specific subcellular location of proteins.
+ meaning: OBI:0002168
+ title: subcellular protein immunohistochemistry assay
+ OBI:0002169:
+ text: OBI:0002169
+ description: A ChIP assay that uses quantitative PCR to determine levels of
+ specific DNA in immunoprecipitated samples.
+ meaning: OBI:0002169
+ title: ChIP-qPCR assay
+ OBI:0002170:
+ text: OBI:0002170
+ description: A systematic evolution of ligands by exponential enrichment assay
+ that starts with a library derived from genomic DNA instead of synthetically
+ derived random DNA molecules.
+ meaning: OBI:0002170
+ title: genomic SELEX
+ OBI:0002171:
+ text: OBI:0002171
+ description: An analyte assay that detects molecules in a mixture dotted on
+ a membrane using DNA probes or antibodies.
+ meaning: OBI:0002171
+ title: dot blot assay
+ OBI:0002172:
+ text: OBI:0002172
+ description: A direct binding assay that detects interactions of labeled RNA
+ with immobilized protein on a membrane.
+ meaning: OBI:0002172
+ title: Northwestern blot assay
+ OBI:0002173:
+ text: OBI:0002173
+ description: A direct binding assay that detects interactions of labeled DNA
+ with immobilized protein on a membrane.
+ meaning: OBI:0002173
+ title: Southwestern blot assay
+ OBI:0002174:
+ text: OBI:0002174
+ description: An immuno staining assay in which samples of intact cells are
+ examined that have had most, if not all, of their surrounding extracellular
+ matrix removed
+ meaning: OBI:0002174
+ title: immunocytochemistry
+ OBI:0002175:
+ text: OBI:0002175
+ description: An analyte assay that detects ATP concentration through light
+ intensity when luciferase catalyzes the oxidation of luciferin in the presence
+ of ATP, magnesium ions, and molecular oxygen.
+ meaning: OBI:0002175
+ title: ATP bioluminescence assay
+ OBI:0002176:
+ text: OBI:0002176
+ description: An assay that measures the electrical properties of biological
+ cells or tissues. Typically, this assay will generate measurements of voltage
+ changes or electric current (or other associated variables such as impedence
+ or capacitance).
+ meaning: OBI:0002176
+ title: electrophysiology assay
+ OBI:0002177:
+ text: OBI:0002177
+ description: An intracellular electrophysiology assay where a glass micropipette
+ is sealed to the surface of the cell membrane as a recording electrode to
+ study ion channel activity. The key distinction of this technique is the
+ electrical resistance of the seal between the cell membrane and the pipette
+ is of the order 10-100 gigaohms, permitting high-resolution current measurements
+ over the cell membrane in several different standard configurations.
+ meaning: OBI:0002177
+ title: patch clamp assay
+ OBI:0002178:
+ text: OBI:0002178
+ description: A patch-clamp assay where the electrode is left in place on the
+ cell, as in cell-attached recordings, but the membrane patch has been perforated,
+ providing access from the interior of the pipette to the intracellular space
+ of the cell. Measurements made with this technique involve recording currents
+ through multiple channels simultaneously, over the membrane of the entire
+ cell.
+ meaning: OBI:0002178
+ title: whole-cell patch clamp assay
+ OBI:0002179:
+ text: OBI:0002179
+ description: A patch-clamp assay where the electrode is left in place on the
+ cell, and the membrane patch has been left intact been perforated. This
+ maintains the separation of the interior of the pipette to the intracellular
+ space of the cell. Measurements made with this technique involve recording
+ currents through multiple channels simultaneously, over the membrane of
+ the entire cell.
+ meaning: OBI:0002179
+ title: cell-attached patch clamp assay
+ OBI:0002180:
+ text: OBI:0002180
+ description: A patch-clamp assay where a patch of the membrane is attached
+ to the patch pipette, detached from the rest of the cell, and the cytosolic
+ surface of the membrane is exposed to the external media, or bath. This
+ provides the experimenter has access to the intracellular surface of the
+ membrane via the bath and can manipulate the environment at the intracellular
+ surface of single ion channels. For example, channels that are activated
+ by intracellular ligands can then be studied through a range of ligand concentrations.
+ meaning: OBI:0002180
+ title: inside-out patch clamp assay
+ OBI:0002181:
+ text: OBI:0002181
+ description: A patch-clamp assay where a patch of the membrane is attached
+ to the patch pipette. In this configuration, the external surface of the
+ cell membrane is exposed as the outside of the membrane patch relative to
+ the patch electrode. An outside-out patch starts with a gigaohm seal in
+ a whole-cell recording configuration. The electrode is slowly withdrawn
+ from the cell, until a fragment of membrane bulges away from the cell, which
+ detaches and reforms as a convex membrane on the end of the electrode, with
+ the original external surface of the membrane facing outward from the electrode.
+ This provides the experimenter with access to the extracellular surface
+ of the membrane via the bath and can manipulate the environment at the extracellular
+ surface of single ion channels.
+ meaning: OBI:0002181
+ title: outside-out patch clamp assay
+ OBI:0002182:
+ text: OBI:0002182
+ description: An cellular electrophysiology assay where the membrane potential
+ of a cell is controlled by the experimentalist. This is accomplished through
+ a feedback mechanism where any change in membrane potential is countered
+ by permitting electrical current to flow into or out of the cell.
+ meaning: OBI:0002182
+ title: voltage clamp assay
+ OBI:0002183:
+ text: OBI:0002183
+ description: The two electrode voltage clamp (TEVC) method utilizes two low-resistance
+ pipettes, one sensing voltage and the other injecting current. The microelectrodes
+ are filled with conductive solution and inserted into the cell to artificially
+ control membrane potential. The membrane acts as a dielectric as well as
+ a resistor, while the fluids on either side of the membrane function as
+ capacitors.[9] The microelectrodes compare the membrane potential against
+ a command voltage, giving an accurate reproduction of the currents flowing
+ across the membrane. Current readings can be used to analyze the electrical
+ response of the cell to different applications. This technique is mainly
+ used in the Oocyte preparation.
+ meaning: OBI:0002183
+ title: two electrode voltage clamp assay
+ OBI:0002184:
+ text: OBI:0002184
+ description: The cut-open oocyte Vaseline gap (COVG) voltage-clamp technique
+ is designed to solve weaknesses in the two elextrode voltage clamp by maximizing
+ the benefits of the Xenopus oocyte expression system by improving on clamp
+ speed, signal-to-noise ratio, and ability to effectively perfuse the oocyte.
+ In this way, it was possible to combine the most popular transient expression
+ system, and the associated benefits of molecular cloning and site-directed
+ mutagenesis, with the superior voltage-clamp properties of cut-open cell
+ techniques.
+ meaning: OBI:0002184
+ title: cut open oocyte voltage clamp assay
+ OBI:0002185:
+ text: OBI:0002185
+ description: The current clamp technique records the membrane potential by
+ injecting current into a cell through the recording electrode. Unlike in
+ the voltage clamp mode, where the membrane potential is held at a level
+ determined by the experimenter, in "current clamp" mode the membrane potential
+ is free to vary, and the amplifier records whatever voltage the cell generates
+ on its own or as a result of stimulation. This technique is used to study
+ how a cell responds when electric current enters a cell; this is important
+ for instance for understanding how neurons respond to neurotransmitters
+ that act by opening membrane ion channels.
+ meaning: OBI:0002185
+ title: current clamp assay
+ OBI:0002186:
+ text: OBI:0002186
+ description: An extracellular electrophysiology assay where electrodes are
+ mounted outside the brain (either on the surface of the scalp on onto the
+ brain surface itself during surgery) to measure the electrical field over
+ the external surface.
+ meaning: OBI:0002186
+ title: electroencephalography
+ OBI:0002187:
+ text: OBI:0002187
+ description: An extracellular electrophysiology assay where a single microelectrode
+ is placed in close proximity to a single neuron to measure voltage and current
+ changes over time. This is the technicque used by Hubel and Wiesel to measure
+ firing properties of primary visual cortex neurons in the 1950s in their
+ original Nobel-prize winning study. A classic, old technique.
+ meaning: OBI:0002187
+ title: single-unit recording
+ OBI:0002188:
+ text: OBI:0002188
+ description: An extracellular electrophysiology assay where a collection of
+ microelectrodes (often in an 'array' configuration) is placed into neural
+ tissue to measure the distribution of voltage and current changes for a
+ population of cells over time.
+ meaning: OBI:0002188
+ title: multi-unit recording
+ OBI:0002189:
+ text: OBI:0002189
+ description: An extracellular electrophysiology assay where a microelectrode
+ is placed in the extracellular space of brain tissue to measure action potential
+ and compared to an electrode either outside or inside that tissue.
+ meaning: OBI:0002189
+ title: local field potential recording
+ OBI:0002436:
+ text: OBI:0002436
+ description: An assay that identifies RNA binding proteins by cross-linking
+ RNA and proteins with UV light, then purifying the bound complexes by oligo(dT)
+ capture. Finally, the complexes are analyzed by mass spectrometry.
+ meaning: OBI:0002436
+ title: RNA interactome capture
+ OBI:0002437:
+ text: OBI:0002437
+ description: A fluorescence microscopy technique where the specimen under
+ investigation is fully bathed in light, as opposed to confocal microscopy
+ in which only a small portion of the specimen is illuminated.
+ meaning: OBI:0002437
+ title: widefield microscopy assay
+ OBI:0002438:
+ text: OBI:0002438
+ description: An assay that detects the proximity of chromosomal DNA through
+ the use of a ligation reaction in isolated nuclei.
+ meaning: OBI:0002438
+ title: nuclear ligation assay
+ OBI:0002439:
+ text: OBI:0002439
+ description: A nuclear ligation assay that detects chromosomal interactions
+ between any two genomic loci. Chromatin segments are cross-linked, cut by
+ restriction enzymes, ligated, and finally analyzed by PCR.
+ meaning: OBI:0002439
+ title: chromosome conformation capture assay
+ OBI:0002440:
+ text: OBI:0002440
+ description: A chromosome conformation capture assay that detects genome-wide
+ chromosomal interactions. High-throughput techniques are used to sequence
+ the ligated fragments after cross-linking and cutting with restriction enzymes.
+ meaning: OBI:0002440
+ title: Hi-C assay
+ OBI:0002441:
+ text: OBI:0002441
+ description: An assay that produces a description of the qualities of an organism
+ that has not been transformed, through observation and physical, non-invasive
+ techniques.
+ meaning: OBI:0002441
+ title: physical examination of an organism
+ OBI:0002442:
+ text: OBI:0002442
+ description: A footprinting assay that uses the reaction of hydroxyl radicals
+ with side-chain sites in molecules (proteins, DNA, etc)_ with the resultant
+ mass shift demonstrating the site of modification, used to_ to asses the
+ accessibility of that site.
+ meaning: OBI:0002442
+ title: hydroxyl-radical footprinting assay
+ OBI:0002443:
+ text: OBI:0002443
+ description: A footprinting assay that determines protein-binding sites on
+ DNA by partial cleavage of ligand-protected DNA restriction fragments with
+ methidium-propyl-EDTA (MPE). MPE-Fe(II) in the presence of oxygen efficiently
+ catalyzes the non-specific clevage of DNA.
+ meaning: OBI:0002443
+ title: methidiumpropyl-EDTA-iron(II) footprinting assay
+ OBI:0002445:
+ text: OBI:0002445
+ description: A transcription profiling assay in which the transcription start
+ site for a gene is determined by identifying the 5' end of mRNA. A radio-labeled
+ primer is annealed to a complementary mRNA sequence near the 3' end, then
+ cDNA is synthesized until the 5' end is reached.
+ meaning: OBI:0002445
+ title: transcription start site mapping by primer extension assay
+ OBI:0002449:
+ text: OBI:0002449
+ description: A footprinting assay that detects the binding of an antigen with
+ an antibody.
+ meaning: OBI:0002449
+ title: footprinting assay measuring binding of a B cell epitope:antibody complex
+ OBI:0002450:
+ text: OBI:0002450
+ description: A hydroxyl-radical footprinting assay that detects the binding
+ of an antigen with an antibody.
+ meaning: OBI:0002450
+ title: hydroxyl-radical footprinting assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0002451:
+ text: OBI:0002451
+ description: An enzyme-linked immunosorbent assay that detects interferon-alpha
+ production by T cells.
+ meaning: OBI:0002451
+ title: ELISA measuring epitope specific interferon-alpha production by T cells
+ OBI:0002452:
+ text: OBI:0002452
+ description: A T cell epitope specific cytokine production assay that detects
+ interferon-alpha production by T cells.
+ meaning: OBI:0002452
+ title: assay measuring epitope specific interferon-alpha production by T cells
+ OBI:0002457:
+ text: OBI:0002457
+ description: A transcription profiling by RNA sequencing assay that maps the
+ genome-wide distribution of transcriptionally-engaged Pol II at base-pair
+ resolution by using biotin-labeled ribonucleotide triphosphate analogs (biotin-NTP)
+ for nuclear run-on reactions, allowing the efficient affinity purification
+ of nascent RNAs for high throughput sequencing from their 3' ends.
+ meaning: OBI:0002457
+ title: precision nuclear run-on sequencing assay
+ OBI:0002458:
+ text: OBI:0002458
+ description: A nuclear ligation assay which uses cross-linking of proteins
+ to proteins and DNA, followed by two rounds of digestion and ligation, inverse
+ PCR, and characterization by microarray or DNA sequencing. This enables
+ unbiased genome-wide screens for DNA contacts made by single genomic sites
+ of interest.
+ meaning: OBI:0002458
+ title: chromosome conformation capture-on-chip assay
+ OBI:0002459:
+ text: OBI:0002459
+ description: A genotyping assay in which carbon-copy chromosome conformation
+ is used to detect polymorphism in DNA samples.
+ meaning: OBI:0002459
+ title: genotype phasing by Hi-C assay
+ OBI:0002485:
+ text: OBI:0002485
+ description: A sequencing assay that incorporates single-end reads and sequencing
+ technology to determine transcripts, gene structures, and gene expressions.
+ meaning: OBI:0002485
+ title: transcript analysis by single-end sequencing assay
+ OBI:0002489:
+ text: OBI:0002489
+ description: An organism detection assay that uses a differential medium to
+ achieve its objective.
+ meaning: OBI:0002489
+ title: differential medium assay
+ OBI:0002564:
+ text: OBI:0002564
+ description: A histological assay that is intended to check for the presence
+ or level of a specific disease.
+ meaning: OBI:0002564
+ title: histopathology assay
+ OBI:0002571:
+ text: OBI:0002571
+ description: A transcription profiling by RNA sequencing assay to study transcriptomes
+ through the enrichment of polyadenylated transcripts or removal of ribosomal
+ RNA prior to high-throughput sequencing.
+ meaning: OBI:0002571
+ title: polyA-selected RNA sequencing assay
+ OBI:0002572:
+ text: OBI:0002572
+ description: A transcription profiling by RNA sequencing assay to study non-polyadenylated
+ transcripts, such as, but not exclusive to unspliced and circular isoforms,
+ through the depletion of polyadenylated transcripts prior to high-throughput
+ sequencing.
+ meaning: OBI:0002572
+ title: polyA-depleted RNA sequencing assay
+ OBI:0002575:
+ text: OBI:0002575
+ description: A transcription profiling by RNA sequencing assay for sequencing
+ isoforms by enriching a cDNA library for full-length reads spanning entire
+ transcript isoforms.
+ meaning: OBI:0002575
+ title: isoform sequencing
+ OBI:0002597:
+ text: OBI:0002597
+ description: A chromosome conformation capture-on-chip assay quantitates the
+ products with multiplexed high-throughput sequencing.
+ meaning: OBI:0002597
+ title: chromosome conformation capture sequencing assay
+ OBI:0002621:
+ text: OBI:0002621
+ description: An assay in which a cellular process is replicated from the bottom-up
+ using isolated components in order to observe how the components work together.
+ meaning: OBI:0002621
+ title: reconstitution assay
+ OBI:0002622:
+ text: OBI:0002622
+ description: A reconstitution assay in which RNA synthesis is investigated
+ using RNA polymerase II transcription systems replicated in vitro from their
+ base components.
+ meaning: OBI:0002622
+ title: in vitro transcription reconstitution assay
+ OBI:0002623:
+ text: OBI:0002623
+ description: A DNA sequencing assay that intends to provide information on
+ the DNA sequences of multiple genomes (a metagenome) from different organisms
+ present in the same input sample.
+ meaning: OBI:0002623
+ title: whole metagenome sequencing assay
+ OBI:0002628:
+ text: OBI:0002628
+ description: A gene knockdown assay in which RNAi gene knockdown is used to
+ disrupt gene transcripts.
+ meaning: OBI:0002628
+ title: RNAi knockdown assay
+ OBI:0002629:
+ text: OBI:0002629
+ description: An assay to study transcription through direct RNA sequence determination,
+ without prior conversion of RNA molecules to cDNA.
+ meaning: OBI:0002629
+ title: direct RNA sequencing assay
+ OBI:0002631:
+ text: OBI:0002631
+ description: A transcription profiling by RNA sequencing assay that uses as
+ input RNA extracts that can be traced to a single cell of origin. These
+ extracts may come from the entire cell or only a part of the cell such as
+ the nucleus or the cytoplasm.
+ meaning: OBI:0002631
+ title: single-cell transcription profiling by RNA sequencing assay
+ OBI:0002634:
+ text: OBI:0002634
+ description: An efficacy of B cell epitope intervention experiment that uses
+ a disease exacerbation in vivo intervention experiment after adoptive transfer
+ of epitope specific antibodies or B cells.
+ meaning: OBI:0002634
+ title: in vivo assay measuring B cell epitope specific disease exacerbation
+ resulting from the adoptive transfer of epitope specific antibodies or B
+ cells
+ OBI:0002635:
+ text: OBI:0002635
+ description: An efficacy of T cell epitope intervention experiment that detects
+ a decrease in disease after adoptive transfer of epitope specfic T cells.
+ meaning: OBI:0002635
+ title: in vivo assay measuring T cell epitope specific disease reduction resulting
+ from the adoptive transfer of epitope specific T cells
+ OBI:0002636:
+ text: OBI:0002636
+ description: An efficacy of B cell epitope intervention experiment that detects
+ a decrease in disease after adoptive transfer of epitope specific antibodies
+ or B cells.
+ meaning: OBI:0002636
+ title: in vivo assay measuring B cell epitope specific disease reduction resulting
+ from adoptive transfer of epitope specific antibodies or B cells
+ OBI:0002637:
+ text: OBI:0002637
+ description: An efficacy of T cell epitope intervention experiment that uses
+ a epitope protection experiment after adoptive transfer of epitope specfic
+ T cells.
+ meaning: OBI:0002637
+ title: in vivo assay measuring T cell epitope specific protection from challenge
+ resulting from the adoptive transfer of epitope specific T cells
+ OBI:0002638:
+ text: OBI:0002638
+ description: An efficacy of B cell epitope intervention experiment that uses
+ a epitope protection experiment after adoptive transfer of epitope specific
+ antibodies or B cells.
+ meaning: OBI:0002638
+ title: in vivo assay measuring B cell epitope specific protection from challenge
+ resulting from adoptive transfer of epitope specific antibodies or B cells
+ OBI:0002639:
+ text: OBI:0002639
+ description: An in vivo assay measuring T cell epitope specific protection
+ from pathogen challenge resulting from the adoptive transfer of epitope
+ specific antibodies or B cells using pathogen burden.
+ meaning: OBI:0002639
+ title: in vivo assay measuring T cell epitope specific protection from challenge
+ resulting from the adoptive transfer of epitope specific T cells based on
+ pathogen burden
+ OBI:0002640:
+ text: OBI:0002640
+ description: An in vivo assay measuring B cell epitope specific protection
+ from pathogen challenge resulting from the adoptive transfer of epitope
+ specific antibodies or B cells using pathogen burden.
+ meaning: OBI:0002640
+ title: in vivo assay measuring B cell epitope specific protection from challenge
+ resulting from the adoptive transfer of epitope specific antibodies or B
+ cells based on pathogen burden
+ OBI:0002641:
+ text: OBI:0002641
+ description: An in vivo assay measuring T cell epitope specific protection
+ from other challenge resulting from the adoptive transfer of epitope specific
+ T cells using survival.
+ meaning: OBI:0002641
+ title: in vivo assay measuring T cell epitope specific protection from other
+ challenge resulting from the adoptive transfer of epitope specific T cells
+ based on survival
+ OBI:0002642:
+ text: OBI:0002642
+ description: An in vivo assay measuring B cell epitope specific protection
+ from other challenge resulting from the adoptive transfer of epitope specific
+ antibodies or B cells using survival.
+ meaning: OBI:0002642
+ title: in vivo assay measuring B cell epitope specific protection from other
+ challenge resulting from the adoptive transfer of epitope specific antibodies
+ or B cells based on survival
+ OBI:0002643:
+ text: OBI:0002643
+ description: An in vivo assay measuring T cell epitope specific protection
+ from tumor challenge resulting from the adoptive transfer of epitope specific
+ T cells using tumor burden.
+ meaning: OBI:0002643
+ title: in vivo assay measuring T cell epitope specific protection from challenge
+ resulting from the adoptive transfer of epitope specific T cells based on
+ tumor burden
+ OBI:0002644:
+ text: OBI:0002644
+ description: An in vivo assay measuring B cell epitope specific protection
+ from tumor challenge resulting from the adoptive transfer of epitope specific
+ antibodies or B cells using tumor burden.
+ meaning: OBI:0002644
+ title: in vivo assay measuring B cell epitope specific protection from challenge
+ resulting from the adoptive transfer of epitope specific antibodies or B
+ cells based on tumor burden
+ OBI:0002645:
+ text: OBI:0002645
+ description: An efficacy of T cell epitope intervention experiment that uses
+ a tolerance induction intervention experiment after adoptive transfer of
+ epitope specfic T cells.
+ meaning: OBI:0002645
+ title: in vivo assay measuring T cell epitope specific tolerance induction
+ resulting from the adoptive transfer of epitope specific T cells
+ OBI:0002646:
+ text: OBI:0002646
+ description: An efficacy of B cell epitope intervention experiment that uses
+ a tolerance induction intervention experiment after adoptive transfer of
+ epitope specific antibodies or B cells.
+ meaning: OBI:0002646
+ title: in vivo assay measuring B cell epitope specific tolerance induction
+ resulting from the adoptive transfer of epitope specific antibodies or B
+ cells
+ OBI:0002647:
+ text: OBI:0002647
+ description: An assay that uses a Giemsa stain to characterize cells.
+ meaning: OBI:0002647
+ title: Giemsa stain assay
+ OBI:0002649:
+ text: OBI:0002649
+ description: An organism detection assay that detects microorganisms in a
+ blood specimen.
+ meaning: OBI:0002649
+ title: blood microbiology assay
+ OBI:0002664:
+ text: OBI:0002664
+ description: A cytometric bead array assay that detects interleukin-15 production
+ by T cells.
+ meaning: OBI:0002664
+ title: cytometric bead array assay measuring epitope specific interleukin-15
+ production by T cells
+ OBI:0002665:
+ text: OBI:0002665
+ description: A cytometric bead array assay that detects interleukin-16 production
+ by T cells.
+ meaning: OBI:0002665
+ title: cytometric bead array assay measuring epitope specific interleukin-16
+ production by T cells
+ OBI:0002666:
+ text: OBI:0002666
+ description: An efficacy of B cell epitope intervention experiment that detects
+ a hypersensitivity response by monitoring skin reactions after adoptive
+ transfer of epitope specific antibodies or B cells.
+ meaning: OBI:0002666
+ title: in vivo assay measuring B cell epitope specific induction of hypersensitivity
+ resulting from the adoptive transfer of epitope specific antibodies or B
+ cells
+ OBI:0002667:
+ text: OBI:0002667
+ description: An efficacy of T cell epitope intervention experiment that detects
+ epitope specific type IV hypersensitivity after adoptive transfer of epitope
+ specfic T cells.
+ meaning: OBI:0002667
+ title: in vivo skin test assay measuring T cell epitope specific type IV hypersensitivity
+ resulting from the adoptive transfer of epitope specific T cells
+ OBI:0002668:
+ text: OBI:0002668
+ description: A T cell epitope specific proliferation assay that is performed
+ in vivo after adoptive transfer of epitope specfic T cells.
+ meaning: OBI:0002668
+ title: in vivo assay measuring epitope specific proliferation of T cells resulting
+ from the adoptive transfer of epitope specific T cells
+ OBI:0002669:
+ text: OBI:0002669
+ description: A T cell epitope specific helper activity assay that detects
+ the ability of a T cell epitope to enhance an antibody response after adoptive
+ transfer of epitope specfic T cells.
+ meaning: OBI:0002669
+ title: assay measuring epitope specific helper T cell enhancement of a B cell
+ mediated immune response resulting from the adoptive transfer of epitope
+ specific T cells
+ OBI:0002670:
+ text: OBI:0002670
+ description: A T cell epitope specific helper activity assay that detects
+ the ability of a T cell epitope to enhance a T cell response after adoptive
+ transfer of epitope specfic T cells.
+ meaning: OBI:0002670
+ title: assay measuring epitope specific helper T cell enhancement of a T cell
+ mediated immune response resulting from the adoptive transfer of epitope
+ specific T cells
+ OBI:0002671:
+ text: OBI:0002671
+ description: An in vivo cell killing assay that detects the killing of an
+ antigen presenting cell (APC) by a T cell whose TCR recognizes an epitope
+ presented by the APC after adoptive transfer of epitope specific T cells.
+ meaning: OBI:0002671
+ title: in vivo assay measuring epitope specific T cell killing resulting from
+ the adoptive transfer of epitope specific T cells
+ OBI:0002672:
+ text: OBI:0002672
+ description: An enzyme-linked immunosorbent assay that detects epitope specific
+ perforin release by T cells.
+ meaning: OBI:0002672
+ title: ELISA measuring epitope specific perforin release by T cells
+ OBI:0002675:
+ text: OBI:0002675
+ description: An assay in which multiplexing the construction and interrogation
+ of larger libraries of reporter constructs allows measurement of the transcriptional
+ regulatory activities of thousands to hundreds of thousands of DNA sequences.
+ meaning: OBI:0002675
+ title: massively parallel reporter assay
+ OBI:0002676:
+ text: OBI:0002676
+ description: An efficacy of T cell epitope intervention experiment that is
+ performed after adoptive transfer of epitope specfic T cells.
+ meaning: OBI:0002676
+ title: in vivo assay measuring a T cell epitope specific response after adoptive
+ transfer of epitope specific T cells
+ OBI:0002677:
+ text: OBI:0002677
+ description: An efficacy of B cell epitope intervention experiment that is
+ performed after adoptive transfer of epitope specific antibodies or B cells.
+ meaning: OBI:0002677
+ title: in vivo assay measuring a B cell epitope specific response after adoptive
+ transfer of epitope specific antibodies or B cells
+ OBI:0002678:
+ text: OBI:0002678
+ description: An efficacy of T cell epitope intervention experiment that uses
+ a disease exacerbation in vivo intervention experiment after adoptive transfer
+ of epitope specfic T cells.
+ meaning: OBI:0002678
+ title: in vivo assay measuring T cell epitope specific disease exacerbation
+ resulting from the adoptive transfer of epitope specific T cells
+ OBI:0002680:
+ text: OBI:0002680
+ description: An assay that measures the entry in target cells of reporter
+ viral particles that express an envelope protein of a different virus of
+ interest.
+ meaning: OBI:0002680
+ title: pseudovirus entry assay
+ OBI:0002692:
+ text: OBI:0002692
+ description: An assay that uses polymerase chain reaction technique to amplify
+ DNA.
+ meaning: OBI:0002692
+ title: polymerase chain reaction assay
+ OBI:0002693:
+ text: OBI:0002693
+ description: An assay that uses digestion of DNA with specific restriction
+ enzymes followed by gel electropheresis to detect differences in the sizes
+ of the generated fragments that are due to genetic differences (polymorphisms)
+ in homologous sequences.
+ meaning: OBI:0002693
+ title: restriction fragment length polymorphism assay
+ OBI:0002694:
+ text: OBI:0002694
+ description: An assay to identify a specific individual organism from a DNA
+ specimen by looking at unique patterns in their DNA.
+ meaning: OBI:0002694
+ title: DNA fingerprinting assay
+ OBI:0002695:
+ text: OBI:0002695
+ description: An assay that aims to detect the presence and/or frequency of
+ resistance to insecticides in an organism or organism population.
+ meaning: OBI:0002695
+ title: insecticide resistance assay
+ OBI:0002696:
+ text: OBI:0002696
+ description: An insecticide resistance assay that detects, in a population,
+ presence and frequency of mutant alleles for previously characterized mutations
+ with insecticide resistance phenotypes.
+ meaning: OBI:0002696
+ title: insecticide resistance by monitoring known mutations assay
+ OBI:0002697:
+ text: OBI:0002697
+ description: An insecticide resistance assay that is based on determination
+ the catalytic activity of an enzyme associated with insecticide resistance
+ phenotypes.
+ meaning: OBI:0002697
+ title: insecticide resistance by detecting enzyme activity assay
+ OBI:0002698:
+ text: OBI:0002698
+ description: An insecticide resistance assay that is typically conducted to
+ measure the effects of a substance on a living organism.
+ meaning: OBI:0002698
+ title: insecticide resistance bioassay
+ OBI:0002699:
+ text: OBI:0002699
+ description: An insecticide resistance by detecting enzyme activity assay
+ that measures activity of alpha esterase.
+ meaning: OBI:0002699
+ title: insecticide resistance by detecting alpha esterase activity assay
+ OBI:0002700:
+ text: OBI:0002700
+ description: An insecticide resistance by detecting enzyme activity assay
+ that measures activity of beta esterase.
+ meaning: OBI:0002700
+ title: insecticide resistance by detecting beta esterase activity assay
+ OBI:0002701:
+ text: OBI:0002701
+ description: An insecticide resistance by detecting enzyme activity assay
+ that measures activity of acetylcholinesterase.
+ meaning: OBI:0002701
+ title: insecticide resistance by detecting acetylcholinesterase activity assay
+ OBI:0002702:
+ text: OBI:0002702
+ description: An insecticide resistance by detecting enzyme activity assay
+ that measures activity of glutathione S-transferase (GST).
+ meaning: OBI:0002702
+ title: insecticide resistance by detecting glutathione S-transferase activity
+ assay
+ OBI:0002703:
+ text: OBI:0002703
+ description: An insecticide resistance by detecting enzyme activity assay
+ that measures activity of carboxylic ester hydrolase using p-nitrophenyl
+ acetate as a substrate.
+ meaning: OBI:0002703
+ title: insecticide resistance by detecting carboxylic ester hydrolase activity
+ assay
+ OBI:0002704:
+ text: OBI:0002704
+ description: An insecticide resistance by detecting enzyme activity assay
+ that measures whether mixed-function oxidase activity present.
+ meaning: OBI:0002704
+ title: insecticide resistance by detecting mixed-function oxidase assay
+ OBI:0002705:
+ text: OBI:0002705
+ description: An insecticide resistance bioassay without the use of any synergist.
+ meaning: OBI:0002705
+ title: direct insecticide resistance bioassay
+ OBI:0002706:
+ text: OBI:0002706
+ description: An insecticide resistance bioassay by adding insecticide directly
+ to the thorax of the insect.
+ meaning: OBI:0002706
+ title: topical application insecticide resistance bioassay
+ OBI:0002707:
+ text: OBI:0002707
+ description: A direct insecticide resistance assay that at preset insecticide
+ dosage scoring mortality to determine resistance of a population.
+ meaning: OBI:0002707
+ title: direct insecticide resistance diagnostic assay
+ OBI:0002708:
+ text: OBI:0002708
+ description: A direct insecticide resistance assay in which an insect population
+ is exposed to a range of insecticide dosage scoring mortality to determine
+ resistance.
+ meaning: OBI:0002708
+ title: insecticide resistance dose response assay
+ OBI:0002709:
+ text: OBI:0002709
+ description: A direct insecticide resistance assay to determine resistance
+ as a consequence of the time of exposure to insecticide.
+ meaning: OBI:0002709
+ title: insecticide resistance time response assay
+ OBI:0002710:
+ text: OBI:0002710
+ description: A direct insecticide resistance diagnostic assay performs in
+ a glass bottle coated with insecticides for detecting resistance to insecticides
+ in vector populations.
+ meaning: OBI:0002710
+ title: Centre for Disease Control and Prevention bottle bioassay
+ OBI:0002711:
+ text: OBI:0002711
+ description: A direct insecticide resistance diagnostic assay uses WHO cone
+ kit.
+ meaning: OBI:0002711
+ title: WHO cone kit diagnostic assay
+ OBI:0002712:
+ text: OBI:0002712
+ description: A direct insecticide resistance diagnostic assay uses WHO paper
+ kit.
+ meaning: OBI:0002712
+ title: WHO paper kit diagnostic assay
+ OBI:0002713:
+ text: OBI:0002713
+ description: A direct insecticide resistance diagnostic assay tests survival
+ of larvae in a medium supplemented with insecticide.
+ meaning: OBI:0002713
+ title: WHO larvicide diagnostic assay
+ OBI:0002714:
+ text: OBI:0002714
+ description: An insecticide resistance dose response assay that performs in
+ a glass bottle coated with insecticides.
+ meaning: OBI:0002714
+ title: insecticide resistance dose response by bottle assay
+ OBI:0002715:
+ text: OBI:0002715
+ description: An insecticide resistance dose response assay that tests survival
+ of larvae in a medium supplemented with insecticide.
+ meaning: OBI:0002715
+ title: insecticide resistance dose response by survival of larvae assay
+ OBI:0002716:
+ text: OBI:0002716
+ description: An insecticide resistance dose response assay using WHO paper
+ kit.
+ meaning: OBI:0002716
+ title: insecticide resistance dose response by WHO paper kit assay
+ OBI:0002717:
+ text: OBI:0002717
+ description: An insecticide resistance time response assay that is performed
+ in a glass bottle coated with insecticides, with the presence of a synergist.
+ meaning: OBI:0002717
+ title: insecticide resistance time response by bottle assay
+ OBI:0002718:
+ text: OBI:0002718
+ description: An insecticide resistance time response assay using WHO paper
+ kit, with the presence of a synergist.
+ meaning: OBI:0002718
+ title: insecticide resistance time response by WHO paper kit assay
+ OBI:0002719:
+ text: OBI:0002719
+ description: An insecticide resistance by monitoring known mutations assay
+ that detects any mutation involving single base changes or small deletions
+ using amplification refractory mutation system (ARMS). The ARMS is based
+ on the use of sequence-specific PCR primers that allow amplification of
+ test DNA only when the target allele is contained within the sample. Following
+ an ARMS reaction the presence or absence of a PCR product is diagnostic
+ for the presence or absence of the target allele. It can be used to analyze
+ human genomic DNA for one or more mutations.
+ meaning: OBI:0002719
+ title: insecticide resistance by amplification refractory mutation system
+ assay
+ OBI:0002720:
+ text: OBI:0002720
+ description: An insecticide resistance by monitoring known mutations assay
+ that detects Single Nucleotide Polymorphisms (SNPs) using PCR technique
+ and mismatched primers that is close to the mutation of interest and digested
+ the PCR productions using restriction enzymes.
+ meaning: OBI:0002720
+ title: insecticide resistance by primer introduced restriction analysis PCR
+ assay
+ OBI:0002721:
+ text: OBI:0002721
+ description: An insecticide resistance by monitoring known mutations assay
+ that detects gene mutation based on nested polymerase chain reaction technique.
+ meaning: OBI:0002721
+ title: insecticide resistance by nested polymerase chain reaction assay
+ OBI:0002722:
+ text: OBI:0002722
+ description: An insecticide resistance assay that is based on monitoring known
+ mutations using ligase detection reaction exquisitely discriminate between
+ a mismatched and complementary DNA helix.
+ meaning: OBI:0002722
+ title: insecticide resistance by ligase detection reaction assay
+ OBI:0002723:
+ text: OBI:0002723
+ description: An insecticide resistance by ligase detection reaction assay
+ that uses fluorescently labeled conserved probes in ligase detection reaction.
+ meaning: OBI:0002723
+ title: insecticide resistance by ligase detection reaction-fluorescent microsphere
+ assay
+ OBI:0002724:
+ text: OBI:0002724
+ description: An insecticide resistance assay that is based on monitoring known
+ mutations by PCR amplification of specific alleles to detect polymorphic
+ or mutant alleles.
+ meaning: OBI:0002724
+ title: insecticide resistance by PCR amplification of specific alleles assay
+ OBI:0002725:
+ text: OBI:0002725
+ description: An insecticide resistance assay that is based on monitoring known
+ mutations by PCR technique that uses target specific probes labeled with
+ fluorogenic chromophores to detect gene mutation.
+ meaning: OBI:0002725
+ title: insecticide resistance by fluorogenic PCR assay
+ OBI:0002726:
+ text: OBI:0002726
+ description: An insecticide resistance by monitoring known mutations assay
+ based on restriction fragment length polymorphism assay.
+ meaning: OBI:0002726
+ title: insecticide resistance by PCR-RFLP assay
+ OBI:0002727:
+ text: OBI:0002727
+ description: An insecticide resistance assay that is based on monitoring known
+ mutations by PCR amplification of short interspersed elements (SINEs).
+ meaning: OBI:0002727
+ title: insecticide resistance by short interspersed elements PCR assay
+ OBI:0002728:
+ text: OBI:0002728
+ description: An organism detection assay that detects pathogens.
+ meaning: OBI:0002728
+ title: pathogen detection assay
+ OBI:0002729:
+ text: OBI:0002729
+ description: A pathogen detection assay that identifies the presence or absence
+ of specific peptide epitopes of circumsporozoite (CS) protein of the most
+ important Plasmodium falciparum and two strains (variants 210 and 247) of
+ the more widespread Plasmodium vivax using a dipstick wicking test strip.
+ meaning: OBI:0002729
+ title: VectorTest assay
+ OBI:0002730:
+ text: OBI:0002730
+ description: A pathogen detection assay that is based on Rapid Analyte Measurement
+ Platform (RAMP) technology to quantify immunologically active substances.
+ meaning: OBI:0002730
+ title: pathogen detection by Rapid Analyte Measurement Platform assay
+ OBI:0002731:
+ text: OBI:0002731
+ description: A pathogen detection assay that is based on loop-mediated isothermal
+ amplification.
+ meaning: OBI:0002731
+ title: pathogen detection by loop-mediated isothermal amplification assay
+ OBI:0002732:
+ text: OBI:0002732
+ description: An assay that analyzes the specimen taken from blood meal fed
+ organism, such as insect.
+ meaning: OBI:0002732
+ title: blood meal assay
+ OBI:0002733:
+ text: OBI:0002733
+ description: A blood meal assay that uses a counter current immunoelectrophoresis
+ technique.
+ meaning: OBI:0002733
+ title: blood meal by counter current immunoelectrophoresis assay
+ OBI:0002734:
+ text: OBI:0002734
+ description: A DNA fingerprinting assay that uses DNA extracted from blood
+ meal fed organism, such as insect.
+ meaning: OBI:0002734
+ title: DNA based blood meal finger printing assay
+ OBI:0002735:
+ text: OBI:0002735
+ description: An organism detection assay that is based on the size of organism.
+ meaning: OBI:0002735
+ title: organism detection by size assay
+ OBI:0002736:
+ text: OBI:0002736
+ description: An organism detection assay that is based on genetic crossings
+ between specimens collected in the field to determine whether fertile progeny
+ is produced.
+ meaning: OBI:0002736
+ title: organism detection by cross mating assay
+ OBI:0002737:
+ text: OBI:0002737
+ description: An organism detection assay that is based on analysis of polytene
+ chromosomes through cytological examination of the banding pattern of the
+ species.
+ meaning: OBI:0002737
+ title: organism detection by cytological chromosome examination assay
+ OBI:0002738:
+ text: OBI:0002738
+ description: An organism detection assay that is based on electrophoresis
+ to determine the isozymes that are present in a specific population to determine
+ the species.
+ meaning: OBI:0002738
+ title: organism detection by isoenzyme electrophoresis assay
+ OBI:0002739:
+ text: OBI:0002739
+ description: An organism detection assay that is based on examination of morphology
+ and the use of specific taxonomic keys to determine the species of the specimen.
+ meaning: OBI:0002739
+ title: organism detection by morphological examination assay
+ OBI:0002740:
+ text: OBI:0002740
+ description: An organism detection assay that is based on PCR.
+ meaning: OBI:0002740
+ title: organism detection by PCR assay
+ OBI:0002741:
+ text: OBI:0002741
+ description: An organism detection assay that is based on DNA hybrdization.
+ meaning: OBI:0002741
+ title: organism detection by specific DNA hybridization assay
+ OBI:0002742:
+ text: OBI:0002742
+ description: An organism detection assay of mosquito species that is on the
+ basis of mosquito survival depending on the salt concentration in the water
+ used to lay their eggs to differentiate between morphologically very similar
+ species.
+ meaning: OBI:0002742
+ title: organism detection by salinity tolerance assay
+ OBI:0002753:
+ text: OBI:0002753
+ description: Precision nuclear run-on and sequencing to detect Pol II initiation
+ sites
+ meaning: OBI:0002753
+ title: PRO-cap
+ OBI:0002759:
+ text: OBI:0002759
+ description: A transcription profiling by RNA sequencing assay in which highly
+ abundant ribosomal RNAs are removed from total RNA before sequencing, resulting
+ in more efficient transcript/gene detection.
+ meaning: OBI:0002759
+ title: ribosomal RNA-depleted RNA sequencing assay
+ OBI:0002760:
+ text: OBI:0002760
+ description: A transcription profiling by RNA sequencing assay that determines
+ the RNA sequence of microbial transcripts from a microbioal community of
+ mixed species from a given microbiome.
+ meaning: OBI:0002760
+ title: metatranscriptome profiling assay
+ OBI:0002761:
+ text: OBI:0002761
+ description: An analyte assay assay that detects and identifies lipids resulting
+ from biochemical and cellular metabolism.
+ meaning: OBI:0002761
+ title: lipid profiling assay
+ OBI:0002762:
+ text: OBI:0002762
+ description: An ATAC-seq assay in which single nuclei are isolated from frozen
+ tissue samples, through a protocol designed to maximally preserve nucleus
+ integrity during sample processing and optimize transposase-mediated fragmentation
+ of chromatin in individual nuclei.
+ meaning: OBI:0002762
+ title: single-nucleus ATAC-seq
+ OBI:0002763:
+ text: OBI:0002763
+ description: An amplicon sequencing assay in which the amplicon is derived
+ from universal primers used to amplify the 16S ribosomal RNA gene from isolate
+ bacterial genomic DNA or metagenomic DNA from a microbioal community. Resulting
+ sequences are compared to reference 16S sequence databases to identify or
+ classify bacteria present within a given sample.
+ meaning: OBI:0002763
+ title: 16s ribosomal gene sequencing assay
+ OBI:0002764:
+ text: OBI:0002764
+ description: An ATAC assay designed to robustly map the accessible genome
+ of individual cells, using sequencing integrated into a programmable microfluidics
+ platform, in order to provide insights into cell-to-cell variation in accessibility
+ profiles.
+ meaning: OBI:0002764
+ title: single-cell ATAC-seq
+ OBI:0002765:
+ text: OBI:0002765
+ description: A protein expression profiling assay of microbial proteins extracted
+ from a microbioal community of mixed species from a given microbiome.
+ meaning: OBI:0002765
+ title: microbiome protein expression profiling assay
+ OBI:0002766:
+ text: OBI:0002766
+ description: An analyte assay to study presence, concentration, or amount
+ of cytokines.
+ meaning: OBI:0002766
+ title: cytokine assay
+ OBI:0002767:
+ text: OBI:0002767
+ description: A sequencing assay in which a DNA or RNA input molecule is amplified
+ by PCR and the product sequenced.
+ meaning: OBI:0002767
+ title: amplicon sequencing assay
+ OBI:0002768:
+ text: OBI:0002768
+ description: A whole metagenome sequencing assay that intends to provide information
+ on multiple genome sequences from different viruses present in the same
+ input sample.
+ meaning: OBI:0002768
+ title: whole virome sequencing assay
+ OBI:0002773:
+ text: OBI:0002773
+ description: An assay that detects the linking of antigens and antibodies
+ via special signaling mechanisms, such as EIA, ELISA, chemiluminescence,
+ etc. that produces one measure (quantitative or qualitative) of the analyte
+ of interest
+ meaning: OBI:0002773
+ title: single-value binding of antibody with reporter to antigen assay
+ OBI:0002946:
+ text: OBI:0002946
+ description: A type of cytometry assay in which fluorescent dyes are used
+ to label and detect proteins or structures associated with molecular processes
+ of apoptosis.
+ meaning: OBI:0002946
+ title: fluorescence imaging-based apoptosis assay
+ OBI:0002947:
+ text: OBI:0002947
+ description: A type of cell proliferation assay in which fluorescent dyes
+ are ued to label and detect proteins or structures that can be used to count
+ cells.
+ meaning: OBI:0002947
+ title: fluorescence imaging-based cell proliferation assay
+ OBI:0002948:
+ text: OBI:0002948
+ description: A type of cytometry assay in which fluorescent dyes are used
+ to label and detect proteins or structures associated with particular cell
+ cycle states.
+ meaning: OBI:0002948
+ title: fluorescence imaging-based cell cycle state assay
+ OBI:0002949:
+ text: OBI:0002949
+ description: A type of cytometry assay in which fluorescent dyes are used
+ to label and detect proteins or structures associated with cell viability.
+ meaning: OBI:0002949
+ title: fluorescence imaging-based cell viability assay
+ OBI:0002950:
+ text: OBI:0002950
+ description: A type of cytometry assay in which fluorescent dyes are used
+ to label and detect proteins or structures to determine if drugs applied
+ to cells in combination have a greater effect together than the sum of their
+ separate effects.
+ meaning: OBI:0002950
+ title: fluorescence imaging-based drug synergy assay
+ OBI:0002951:
+ text: OBI:0002951
+ description: A type of cytometry assay in which fluorescent dyes are used
+ to label and detect proteins or structures in order to determine cell morphology.
+ meaning: OBI:0002951
+ title: fluorescence imaging-based cell morphology assay
+ OBI:0002952:
+ text: OBI:0002952
+ description: A type of cytometry assay in which fluorescent dyes are used
+ to stain seven major cellular components followed by automatic image capture
+ and analysis which extracts shape, texture, and intensity parameters.
+ meaning: OBI:0002952
+ title: fluorescence imaging multiplex cytological profiling
+ OBI:0002953:
+ text: OBI:0002953
+ description: A type of assay that measures the quantity and/or identity of
+ proteins in their modficied and unmodified states where modifications include
+ phosphorylation, methylation, acetylation, etc.
+ meaning: OBI:0002953
+ title: protein state assay
+ OBI:0002954:
+ text: OBI:0002954
+ description: A type of protein state assay that employs high-throughput microscopy
+ to measure levels of proteins in different phosphorylation states.
+ meaning: OBI:0002954
+ title: fluorescence imaging-based protein phosphorylation state assay
+ OBI:0002955:
+ text: OBI:0002955
+ description: A type of protein state assay that employs mass spectrometry
+ to measure levels of proteins in different phosphorylation states.
+ meaning: OBI:0002955
+ title: mass spectrometry-based protein state assay
+ OBI:0002956:
+ text: OBI:0002956
+ description: A type of mass spectrometry protein state assay that measures
+ levels of a targeted set of proteins in different phosphorylation states
+ in response to drug perturbations.
+ meaning: OBI:0002956
+ title: targeted, drug-modulated, mass spectrometry-based protein phoshporylation-state
+ assay
+ OBI:0002957:
+ text: OBI:0002957
+ description: A type of protein state assay where tissue or cell samples are
+ lysed and then spotted onto a slide which is probed with antibodies specific
+ to proteins with and without post-translational modifications.
+ meaning: OBI:0002957
+ title: reverse phase protein array profiling assay
+ OBI:0002958:
+ text: OBI:0002958
+ description: A type of mass spectrometry assay using a data-independent acquisition
+ method to identify target peptides.
+ meaning: OBI:0002958
+ title: SWATH-MS protein profiling assay
+ OBI:0002959:
+ text: OBI:0002959
+ description: A type of tandem mass spectrometry where isotopomer labels are
+ employed for accurate quantification and identification of specific proteins.
+ meaning: OBI:0002959
+ title: tandem mass tag mass spectrometry assay
+ OBI:0002960:
+ text: OBI:0002960
+ description: A type of reporter gene assay that employs fluorescence imaging
+ to detect a reporter gene's expression.
+ meaning: OBI:0002960
+ title: fluorescence imaging-based reporter gene assay
+ OBI:0002961:
+ text: OBI:0002961
+ description: A type of epigenetic modification assay that employs targeted
+ quantitative mass spectrometry to profile modifications of the core histones
+ of chromatin.
+ meaning: OBI:0002961
+ title: global chromatin profiling by mass spectrometry assay
+ OBI:0002962:
+ text: OBI:0002962
+ description: A type of assay that identifies compounds that inhibit the activity
+ of kinases.
+ meaning: OBI:0002962
+ title: kinase inhibitor assay
+ OBI:0002963:
+ text: OBI:0002963
+ description: A type of proprietary kinase inhibitor assay that and employs
+ a panel of kinases against which one can test compounds for their selectivity
+ and potency in interactions with kinases, without the need to add ATP to
+ the reactions.
+ meaning: OBI:0002963
+ title: KINOMEscan assay
+ OBI:0002964:
+ text: OBI:0002964
+ description: A type of proprietary in situ kinase inhibitor assay that employs
+ biotinylated acyl phosphates of ATP and ADP.
+ meaning: OBI:0002964
+ title: KiNativ assay
+ OBI:0002965:
+ text: OBI:0002965
+ description: A type of transcription profiling assay in which a set of landmark
+ transcripts that have been determined to provide a comprehensive profile
+ of cell activity, plus numerous steady-state controls, are assayed via ligation-mediated
+ amplification followed by capture on fluorescently labeled microspheres
+ followed by detection of fluorescence.
+ meaning: OBI:0002965
+ title: landmark transcript profiling assay
+ OBI:0002966:
+ text: OBI:0002966
+ description: A type of cytometry assay where cells are incubated for three
+ days with a standardized set of extracellular matrix proteins in combination
+ with various ligands creating varying microenvironment perterbations for
+ the cells. Immunofluorescent imaging of cells is used to measure features
+ such as morphology, metabolism, cell cycle, and nuclear activity.
+ meaning: OBI:0002966
+ title: microenvironment microarray assay
+ OBI:0002967:
+ text: OBI:0002967
+ description: A western blot assay that provides a high-throughput, sensitive,
+ and quantitative measurement of proteins from numerous samples via an array
+ of small western blots on a single sheet of nitrocellulose.
+ meaning: OBI:0002967
+ title: microwestern meso-scale quantitative western blot assay
+ OBI:0002968:
+ text: OBI:0002968
+ description: A type of metabolic profiling assay which employs a hybrid dual
+ quadrupole linear ion trap mass spectrometer for steady-state profiling
+ of endogenous polar metabolites from organic extractions from biological
+ samples.
+ meaning: OBI:0002968
+ title: positive/negative ion switching metabolite profiling assay
+ OBI:0002969:
+ text: OBI:0002969
+ description: A type of microscopy assay resulting in highly multiplexed immunofluorescence
+ imaging through sequential rounds of imaging followed by fluorophore inactivation.
+ meaning: OBI:0002969
+ title: cyclic immunofluoroescence assay
+ OBI:0002970:
+ text: OBI:0002970
+ description: A type of protein state assay in which antibodies attached to
+ different colored beads and fluorescent reporter dye labels are used in
+ a multiplexed mixture to assay for proteins in specific states.
+ meaning: OBI:0002970
+ title: multiplex bead-based protein state immunoassay
+ OBI:0002984:
+ text: OBI:0002984
+ description: A Hi-C assay in which a selection step is performed on ligated
+ fragments in order to enrich for ligation products containing specific regions
+ of interest.
+ meaning: OBI:0002984
+ title: capture Hi-C assay
+ OBI:0002985:
+ text: OBI:0002985
+ description: An imaging assay in which nuclear magnetic resonance is used
+ to produce information about the interior structure and composition of an
+ input material entity.
+ meaning: OBI:0002985
+ title: magnetic resonance imaging assay
+ OBI:0002986:
+ text: OBI:0002986
+ description: An imaging assay that uses a series of X-ray images to produce
+ information about the interior structure and composition of an input material
+ entity.
+ meaning: OBI:0002986
+ title: computed tomography imaging assay
+ OBI:0002987:
+ text: OBI:0002987
+ description: An imaging assay in which positron-emitting radionuclides are
+ used to visualize functional processes of an input material entity.
+ meaning: OBI:0002987
+ title: positron emission tomography imaging assay
+ OBI:0002990:
+ text: OBI:0002990
+ description: A sequencing assay that determines the sequences of DNA or RNA
+ molecules that encode the repertoire of T cell receptors within an input
+ sample.
+ meaning: OBI:0002990
+ title: T cell receptor repertoire sequencing assay
+ OBI:0002991:
+ text: OBI:0002991
+ description: A sequencing assay that determines the sequence of a DNA or RNA
+ molecules that encode the repertoire of B cell receptors within an input
+ sample.
+ meaning: OBI:0002991
+ title: B cell receptor repertoire sequencing assay
+ OBI:0003009:
+ text: OBI:0003009
+ description: An assay that measures ferritin
+ meaning: OBI:0003009
+ title: ferritin assay
+ OBI:0003010:
+ text: OBI:0003010
+ description: An assay that measures fibrinogen
+ meaning: OBI:0003010
+ title: fibrinogen assay
+ OBI:0003011:
+ text: OBI:0003011
+ description: An analyte assay that measures the abundance of iron
+ meaning: OBI:0003011
+ title: iron assay
+ OBI:0003012:
+ text: OBI:0003012
+ description: An analyte assay that measures the abundance of ionized calcium
+ meaning: OBI:0003012
+ title: ionized calcium assay
+ OBI:0003013:
+ text: OBI:0003013
+ description: An analyte assay that measures the abundance of transferrin
+ meaning: OBI:0003013
+ title: transferrin assay
+ OBI:0003014:
+ text: OBI:0003014
+ description: An analyte assay that measures the abundance of uric acid
+ meaning: OBI:0003014
+ title: uric acid assay
+ OBI:0003015:
+ text: OBI:0003015
+ description: An analyte assay that measures the abundance of globulin
+ meaning: OBI:0003015
+ title: globulin assay
+ OBI:0003016:
+ text: OBI:0003016
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of myelocytes
+ meaning: OBI:0003016
+ title: myelocyte assay
+ OBI:0003017:
+ text: OBI:0003017
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of metamyelocytes
+ meaning: OBI:0003017
+ title: metamyelocyte assay
+ OBI:0003018:
+ text: OBI:0003018
+ description: A cytometry assay that measures the proportion of red blood cells
+ meaning: OBI:0003018
+ title: hematocrit assay
+ OBI:0003019:
+ text: OBI:0003019
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of promyelocytes
+ meaning: OBI:0003019
+ title: promyelocyte assay
+ OBI:0003021:
+ text: OBI:0003021
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of basophils
+ meaning: OBI:0003021
+ title: basophil assay
+ OBI:0003022:
+ text: OBI:0003022
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of neutrophils
+ meaning: OBI:0003022
+ title: neutrophil assay
+ OBI:0003023:
+ text: OBI:0003023
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of eosinophils
+ meaning: OBI:0003023
+ title: eosinophil assay
+ OBI:0003024:
+ text: OBI:0003024
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of lymphocytes
+ meaning: OBI:0003024
+ title: lymphocyte assay
+ OBI:0003025:
+ text: OBI:0003025
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of monocytes
+ meaning: OBI:0003025
+ title: monocyte assay
+ OBI:0003026:
+ text: OBI:0003026
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of reticulocytes
+ meaning: OBI:0003026
+ title: reticulocyte assay
+ OBI:0003027:
+ text: OBI:0003027
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of macrophages
+ meaning: OBI:0003027
+ title: macrophage assay
+ OBI:0003028:
+ text: OBI:0003028
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of platelets
+ meaning: OBI:0003028
+ title: platelet assay
+ OBI:0003031:
+ text: OBI:0003031
+ description: A polymerase chain reaction assay that uses target specific probes
+ labeled with fluorogenic chromophores.
+ meaning: OBI:0003031
+ title: fluorogenic PCR assay
+ OBI:0003032:
+ text: OBI:0003032
+ description: A genotyping assay that uses polymerase chain reaction.
+ meaning: OBI:0003032
+ title: genotyping by PCR assay
+ OBI:0003033:
+ text: OBI:0003033
+ description: A type of DNA sequencing assay employing in situ chromatin profiling
+ in which antibody-targeted controlled cleavage by micrococcal nuclease releases
+ specific protein-DNA complexes into the the supernatant for sequencing.
+ meaning: OBI:0003033
+ title: cleavage under targets and release using nuclease assay
+ OBI:0003034:
+ text: OBI:0003034
+ description: A type of DNA sequencing assay employing in situ chromatin profiling
+ in which a chromatin protein is bound in situ by a specific antibody, which
+ then tethers to a protein A-Tn5 hyperactive transposase fusion protein (pA-Tn5)
+ loaded with sequence adapters. Activation of pA-Tn5 results in factor-targeted
+ tagmentation, generating fragments ready for PCR enrichment and DNA sequencing.
+ meaning: OBI:0003034
+ title: cleavage under targets and tagmentation
+ OBI:0003035:
+ text: OBI:0003035
+ description: A physical examination of an organism that has the objective
+ to determine the severity of coma in a patient.
+ meaning: OBI:0003035
+ title: coma severity assay
+ OBI:0003036:
+ text: OBI:0003036
+ description: An assay that detects Plasmodium gametocytes in a specimen.
+ meaning: OBI:0003036
+ title: Plasmodium gametocyte detection assay
+ OBI:0003037:
+ text: OBI:0003037
+ description: An assay that is quick and easy in the diagnosis of malaria by
+ detecting evidence of malaria parasites (antigens) in human blood.
+ meaning: OBI:0003037
+ title: malaria rapid diagnosis assay
+ OBI:0003038:
+ text: OBI:0003038
+ description: An assay that detects parasite in a specimen.
+ meaning: OBI:0003038
+ title: parasite detection assay
+ OBI:0003039:
+ text: OBI:0003039
+ description: An organism detection assay that detects microorganisms in a
+ feces specimen.
+ meaning: OBI:0003039
+ title: feces microbiology assay
+ OBI:0003040:
+ text: OBI:0003040
+ description: An assay that has a blood specimen as evaulant.
+ meaning: OBI:0003040
+ title: blood assay
+ OBI:0003041:
+ text: OBI:0003041
+ description: A parasite detection assay that can quickly establish the diagnosis
+ of P. falciparum or P. vivax malaria infection by detecting the antigens
+ in a person's blood.
+ meaning: OBI:0003041
+ title: falcivax rapid diagnostic test
+ OBI:0003042:
+ text: OBI:0003042
+ description: A parasite detection assay that is rapid, sensitive, and able
+ to differentiate between P. falciparum and other malaria parasites.
+ meaning: OBI:0003042
+ title: optimal-IT rapid diagnostic test
+ OBI:0003043:
+ text: OBI:0003043
+ description: An assay that has a urine specimen as evaluant.
+ meaning: OBI:0003043
+ title: urine assay
+ OBI:0003044:
+ text: OBI:0003044
+ description: A parasite detection by PCR assay that identifies the species
+ of parasite.
+ meaning: OBI:0003044
+ title: parasite species identification by PCR assay
+ OBI:0003045:
+ text: OBI:0003045
+ description: A parasite detection assay that uses PCR.
+ meaning: OBI:0003045
+ title: parasite detection by PCR assay
+ OBI:0003080:
+ text: OBI:0003080
+ description: An assay that detects body temperature of an organism.
+ meaning: OBI:0003080
+ title: organismal body temperature measurement assay
+ OBI:0003087:
+ text: OBI:0003087
+ description: A fluorescence detection assay in which the light that is naturally
+ emitted by a sample is visualized after excitation of the sample with light
+ at a suitable wavelength.
+ meaning: OBI:0003087
+ title: autofluorescence assay
+ OBI:0003088:
+ text: OBI:0003088
+ description: An autofluorescence assay in which the light that is naturally
+ emitted by a sample is visualized via microscopy after excitation of the
+ sample with light at a suitable wavelength.
+ meaning: OBI:0003088
+ title: autofluorescence microscopy assay
+ OBI:0003089:
+ text: OBI:0003089
+ description: An assay for transposase-accessible chromatin using sequencing
+ in which the sample that is sequenced is derived from a collection of cells,
+ such as a tissue sample or entire cell culture, and therefore provides results
+ representative of the aggregate of sample cells.
+ meaning: OBI:0003089
+ title: bulk assay for transposase-accessible chromatin using sequencing
+ OBI:0003090:
+ text: OBI:0003090
+ description: A transcription profiling by RNA sequencing assay in which the
+ sample that is sequenced is derived from a collection of cells, such as
+ a tissue sample or entire cell culture, and therefore provides results representative
+ of the aggregate of sample cells.
+ meaning: OBI:0003090
+ title: bulk RNA-seq assay
+ OBI:0003091:
+ text: OBI:0003091
+ description: An imaging assay in which multiple cycles consisting of fluorescent
+ labeling, imaging, and fluorophor deactivation are used to detect multiple
+ proteins and their locations in a given sample of tissues or cells.
+ meaning: OBI:0003091
+ title: multiplexed fluorescent antibody imaging assay
+ OBI:0003092:
+ text: OBI:0003092
+ description: A multiplexed fluorescent antibody imaging assay that involves
+ an iterative staining, imaging and dye inactivation workflow for over 60
+ biomarkers on a single fixed tissue section.
+ meaning: OBI:0003092
+ title: Cell DIVE multiplexed imaging assay
+ OBI:0003093:
+ text: OBI:0003093
+ description: A multiplexed fluorescent antibody imaging assay that involves
+ a highly multiplexed analysis of up to 40 proteins in a tissue using cyclic
+ detection of DNA-indexed antibody panels.
+ meaning: OBI:0003093
+ title: co-detection by indexing assay
+ OBI:0003094:
+ text: OBI:0003094
+ description: An in-situ hybridization assay in which fluorescently labeled
+ molecules are used to localize specific DNA or RNA sequences.
+ meaning: OBI:0003094
+ title: fluorescence in-situ hybridization assay
+ OBI:0003095:
+ text: OBI:0003095
+ description: A fluorescence in-situ hybridization assay which involves multiplex
+ in situ digital quantification of targeted RNA transcripts in fresh or frozen
+ tissue providing an understanding of the spatial organization of different
+ cell types.
+ meaning: OBI:0003095
+ title: decoding amplified targeted transcripts with fluorescence in situ hybridization
+ assay
+ OBI:0003096:
+ text: OBI:0003096
+ description: A cytometry time of flight assay in which molecules of interest
+ on or in cells are imaged through a system in which samples are labeled
+ with multiple different rare-earth tagged antibodies. The sample is then
+ ablated with a laser and the labeled material is detected by cytometry time
+ of flight mass spectrometry.
+ meaning: OBI:0003096
+ title: imaging mass cytometry assay
+ OBI:0003097:
+ text: OBI:0003097
+ description: A mass spectrometry assay where a sample mixture is first separated
+ by liquid chromatography before being converted into ions which are characterized
+ by using mass spectrometry based on their mass-to-charge ratio and relative
+ abundance.
+ meaning: OBI:0003097
+ title: liquid chromatography mass spectrometry assay
+ OBI:0003098:
+ text: OBI:0003098
+ description: A fluorescence microscopy that involves capturing of photons
+ emitted by fluorophores excited with a thin sheet of laser light in a sample
+ only in a relatively narrow plane by a detection objective oriented perpendicularly
+ to the light sheet and imaged onto a detection device such as a CCD camera.
+ meaning: OBI:0003098
+ title: lightsheet fluorescence microscopy assay
+ OBI:0003099:
+ text: OBI:0003099
+ description: A mass spectrometry assay that involves collection of spatially
+ resolved mass spectra of a sample during microscopy where a pulse laser
+ is used to produce both ionisation and vaporization. The sample is held
+ in a matrix (such as dihydrobenzoic acid) to protect it from direct laser
+ illumination and to separate the sample molecules. The spectra are used
+ to visualise the spatial distribution of biomolecules by their molecular
+ masses.
+ meaning: OBI:0003099
+ title: matrix assisted laser desorption ionization imaging mass spectrometry
+ assay
+ OBI:0003100:
+ text: OBI:0003100
+ description: A cytometry time of flight assay in which molecules of interest
+ on or in cells are imaged through a system in which samples are labeled
+ with multiple different rare-earth tagged antibodies. A primary ion beam
+ is ued to rasterize sections under vacuum, releasing showers of secondary
+ ions detected by cytometry time of flight mass spectrometry.
+ meaning: OBI:0003100
+ title: multiplexed ion beam imaging assay
+ OBI:0003101:
+ text: OBI:0003101
+ description: A mass spectrometry assay that analyzes organic and biological
+ molecules on a substrate by desorption of an analyte into a solvent bridge
+ formed between two capillaries and the analysis surface. One capillary supplies
+ solvent to create and maintain the bridge, while the second capillary transports
+ the dissolved analyte from the bridge to the mass spectrometer. A high voltage
+ applied between the inlet of mass spectrometer and the primary capillary
+ creates a self-aspirating nanospray.
+ meaning: OBI:0003101
+ title: nanospray desorption electrospray ionization assay
+ OBI:0003102:
+ text: OBI:0003102
+ description: A protein expression profiling assay in which proteomics sample
+ processing is performed in nanoliter volumes. Flow cytometry or laser microdissection
+ is employed to isolate a small population or single cells into a nanoPOTS
+ chip. Then, liquid chromatography mass spectrometry is used to measure the
+ global protein expression.
+ meaning: OBI:0003102
+ title: nanodroplet processing in one pot for trace samples assay
+ OBI:0003103:
+ text: OBI:0003103
+ description: A histological assay which is used on tissue samples to demonstrate
+ the presence of carbohydrates and carbohydrate compounds such as polysaccharides,
+ mucin, glycogen, or fungal cell wall components.
+ meaning: OBI:0003103
+ title: periodic acid-Schiff staining assay
+ OBI:0003104:
+ text: OBI:0003104
+ description: An assay for transposase-accessible chromatin that uses sequencing
+ which involves single cell combinatorial indexing ('sci-') strategy where
+ nucleic acids from each of many cells are uniquely tagged through several
+ rounds of split-pool barcoding which enables identification of single cells
+ without single cell isolation.
+ meaning: OBI:0003104
+ title: single cell combinatorial indexing assay for transposase-accessessable
+ chromatin using sequencing
+ OBI:0003105:
+ text: OBI:0003105
+ description: A single-cell transcription profiling by RNA sequencing assay
+ that involves single cell combinatorial indexing ('sci-') strategy to profile
+ the transcriptomes of single cells or nuclei without single cell isolation.
+ meaning: OBI:0003105
+ title: single-cell combinatorial indexing RNA sequencing assay
+ OBI:0003106:
+ text: OBI:0003106
+ description: A fluorescence in-situ hybridization assay that involves ultra-resolution
+ imaging of cell activity by targetting thousands of single molecules with
+ fluorescent probes which find and hybridize with complementary DNA or RNA
+ sequences in the tissue sample, thus enabling identification of those molecules
+ directly in single cells with their spatial context preserved.
+ meaning: OBI:0003106
+ title: sequential fluorescence in-situ hybridization assay
+ OBI:0003107:
+ text: OBI:0003107
+ description: A transcription profiling by RNA sequencing assay that involves
+ transfer of RNA from tissue sections onto a surface covered in DNA-barcoded
+ beads with known positions, allowing the locations of the RNA to be inferred
+ by sequencing.
+ meaning: OBI:0003107
+ title: slide-seq assay
+ OBI:0003108:
+ text: OBI:0003108
+ description: An assay that involves joint profiling of accessible chromatin
+ and RNA within the same cells which enables direct matching of transcriptional
+ regulation to its outputs.
+ meaning: OBI:0003108
+ title: single-nucleus chromatin accessibility and mRNA expression sequencing
+ assay
+ OBI:0003110:
+ text: OBI:0003110
+ description: A mass spectrometry assay combining mass spectrometry and gas
+ chromatography for the qualitative as well as quantitative determination
+ of compounds.
+ meaning: OBI:0003110
+ title: gas chromatography mass spectrometry assay
+ OBI:0003111:
+ text: OBI:0003111
+ description: An analyte assay that uses aptamers to detect protein analytes
+ in serum.
+ meaning: OBI:0003111
+ title: SOMAscan assay
+ OBI:0003112:
+ text: OBI:0003112
+ description: A proximity extension assay that uses quantitative polymerase
+ chain reaction (qPCR) technology to determine the concentration/presence
+ of proteins using a high-multiplex, high-throughput protein biomarker platform.
+ The assay utilizes two distinct oligonucleotide-labeled antibodies (‘probes’)
+ that bind at different sites for each detected protein. When the two probes
+ are in close proximity, a new PCR target sequence is formed by a proximity-dependent
+ DNA polymerization event. The resulting sequence is subsequently detected
+ and quantified using standard real-time PCR.
+ meaning: OBI:0003112
+ title: Olink assay
+ OBI:0003113:
+ text: OBI:0003113
+ description: An analyte assay that uses quantitative polymerase chain reaction
+ (qPCR) technology to determine the concentration/presence of an analyte
+ or analyte complex.
+ meaning: OBI:0003113
+ title: proximity extension assay
+ OBI:0003115:
+ text: OBI:0003115
+ description: A cytometric bead array assay in which a series of beads are
+ coated with antibodies specific to antigens of interest. Antigens of interest
+ attach to antibodies on the beads. Fluorescent labeled secondary antibodies
+ are used to detect the antigens of interest.
+ meaning: OBI:0003115
+ title: antigen detection by cytometric bead array assay
+ OBI:0003116:
+ text: OBI:0003116
+ description: A cytometric bead array assay that detects antigen-specific antibodies.
+ In the assay a series of beads are coated with antigens which capture antibodies
+ specific to the antigens. Fluorescent labeled secondary antibodies are used
+ to detect the antibodies of interest.
+ meaning: OBI:0003116
+ title: antibody detection by cytometric bead array assay
+ OBI:0003117:
+ text: OBI:0003117
+ description: An assay that determines the 3-dimensional configuration of a
+ molecular entity or molecular complex.
+ meaning: OBI:0003117
+ title: 3D molecular structure determination assay
+ OBI:0003118:
+ text: OBI:0003118
+ description: A 3D molecular structure determination assay that uses electron
+ microscopy imaging.
+ meaning: OBI:0003118
+ title: electron-microscopy 3D molecular structure determination assay
+ OBI:0003122:
+ text: OBI:0003122
+ description: A 3D structure determination assay that determines the 3-dimensional
+ configuration of a cell.
+ meaning: OBI:0003122
+ title: 3D cell structure determination assay
+ OBI:0003123:
+ text: OBI:0003123
+ description: A 3D cell structure determination assay that determines the 3-dimensional
+ configuration of a neural cell.
+ meaning: OBI:0003123
+ title: 3D neural cell structure determination assay
+ OBI:0003124:
+ text: OBI:0003124
+ description: A 3D neural cell structure determination assay that determines
+ the 3-dimensional configuration of a neuron.
+ meaning: OBI:0003124
+ title: neuron morphology assay
+ OBI:0003125:
+ text: OBI:0003125
+ description: A 3D neural cell structure determination assay where sparse and
+ stochastic methods are used to label genetically-defined neurons.
+ meaning: OBI:0003125
+ title: mosaicism with repeat frameshift genetic sparse labeling
+ OBI:0003126:
+ text: OBI:0003126
+ description: A neuron morphology assay where the morphology or structure of
+ a neuron is represented. Often, this assay is a combination of different
+ assays (sparse labelling, fluorescent labeling, fMOST).
+ meaning: OBI:0003126
+ title: neuron morphology reconstruction assay
+ OBI:0003127:
+ text: OBI:0003127
+ description: An immune epitope assay that characterizes the structrue of an
+ antibody-epitope complex, or measures the binding of an antibody receptor
+ to epitope, or the immune response process resulting from such a binding
+ event or the recognition of the epitope.
+ meaning: OBI:0003127
+ title: B cell epitope assay
+ OBI:0003128:
+ text: OBI:0003128
+ description: An immune epitope assay that characterizes the structrue of an
+ epitope-T cell receptor complex, or measures the binding of a T cell receptor
+ to epitope, or the immune response process resulting from such a binding
+ event or the recognition of the epitope.
+ meaning: OBI:0003128
+ title: T cell epitope assay
+ OBI:0003145:
+ text: OBI:0003145
+ description: An assay that detects the binding of a MHC molecule with a ligand,
+ and produces a quantitative measurement of the binding as an output.
+ meaning: OBI:0003145
+ title: assay measuring quantitative binding of a MHC:ligand complex
+ OBI:0003146:
+ text: OBI:0003146
+ description: An assay that detects the binding of an antigen with an antibody,
+ and produces a quantitative measurement of the binding as an output.
+ meaning: OBI:0003146
+ title: assay measuring quantitative binding of an antigen:antibody complex
+ OBI:0003147:
+ text: OBI:0003147
+ description: An assay that detects the binding of a MHC:epitope complex with
+ a T cell receptor, and produces a quantitative measurement of the binding
+ as an output.
+ meaning: OBI:0003147
+ title: assay measuring quantitative binding of an epitope:MHC:TCR complex
+ OBI:0003148:
+ text: OBI:0003148
+ description: An albumin assay that measures the concentration of albumin in
+ a specimen.
+ meaning: OBI:0003148
+ title: albumin concentration assay
+ OBI:0003149:
+ text: OBI:0003149
+ description: A basophil assay that measures the percentage of basophils in
+ a specimen.
+ meaning: OBI:0003149
+ title: basophil percentage assay
+ OBI:0003150:
+ text: OBI:0003150
+ description: A calcium cation assay that measures the concentration of calcium
+ cations in a specimen.
+ meaning: OBI:0003150
+ title: calcium cation concentration assay
+ OBI:0003151:
+ text: OBI:0003151
+ description: A chloride assay that measures the concentration of chloride
+ in a specimen.
+ meaning: OBI:0003151
+ title: chloride concentration assay
+ OBI:0003152:
+ text: OBI:0003152
+ description: A cholesterol assay that measures the concentration of cholesterol
+ in a specimen.
+ meaning: OBI:0003152
+ title: cholesterol concentration assay
+ OBI:0003153:
+ text: OBI:0003153
+ description: A creatinine assay that measures the concentration of creatinine
+ in a specimen.
+ meaning: OBI:0003153
+ title: creatinine concentration assay
+ OBI:0003154:
+ text: OBI:0003154
+ description: An eosinophil assay that measures the percentage of eosinophils
+ in a specimen.
+ meaning: OBI:0003154
+ title: eosinophil percentage assay
+ OBI:0003155:
+ text: OBI:0003155
+ description: A globulin assay that measures the concentration of globulin
+ in a specimen.
+ meaning: OBI:0003155
+ title: globulin concentration assay
+ OBI:0003156:
+ text: OBI:0003156
+ description: A hemoglobin assay that measures the amount of hemoglobin in
+ a specimen.
+ meaning: OBI:0003156
+ title: hemoglobin concentration assay
+ OBI:0003157:
+ text: OBI:0003157
+ description: A high-density lipoprotein cholesterol assay that measures the
+ concentration of high-density lipoprotein cholesterol in a specimen.
+ meaning: OBI:0003157
+ title: high-density lipoprotein cholesterol concentration assay
+ OBI:0003158:
+ text: OBI:0003158
+ description: An iron assay that measures the concentration of iron cation
+ in a specimen.
+ meaning: OBI:0003158
+ title: iron concentration assay
+ OBI:0003159:
+ text: OBI:0003159
+ description: A low-density lipoprotein cholesterol assay that measures the
+ concentration of low-density lipoprotein cholesterol in a specimen.
+ meaning: OBI:0003159
+ title: low-density lipoprotein cholesterol concentration assay
+ OBI:0003160:
+ text: OBI:0003160
+ description: A lymphocyte assay that measures the percentage of lymphocytes
+ in a specimen.
+ meaning: OBI:0003160
+ title: lymphocyte percentage assay
+ OBI:0003161:
+ text: OBI:0003161
+ description: A metamyelocyte assay that measures the number of metamyelocytes
+ in a specimen.
+ meaning: OBI:0003161
+ title: metamyelocyte count assay
+ OBI:0003162:
+ text: OBI:0003162
+ description: A metamyelocyte assay that measures the percentage of metamyelocytes
+ in a specimen.
+ meaning: OBI:0003162
+ title: metamyelocyte percentage assay
+ OBI:0003163:
+ text: OBI:0003163
+ description: A methemoglobin assay that measures the percentage of methemoglobin
+ in a specimen.
+ meaning: OBI:0003163
+ title: methemoglobin percentage assay
+ OBI:0003164:
+ text: OBI:0003164
+ description: A monocyte assay that measures the percentage of monocytes in
+ a specimen.
+ meaning: OBI:0003164
+ title: monocyte percentage assay
+ OBI:0003165:
+ text: OBI:0003165
+ description: A myelocyte assay that measures the number of myelocytes in a
+ specimen.
+ meaning: OBI:0003165
+ title: myelocyte count assay
+ OBI:0003166:
+ text: OBI:0003166
+ description: A neutrophil assay that measures the percentage of neutrophils
+ in a specimen.
+ meaning: OBI:0003166
+ title: neutrophil percentage assay
+ OBI:0003167:
+ text: OBI:0003167
+ description: A phosphate ion assay that measures the concentration of phosphate
+ ions in a specimen.
+ meaning: OBI:0003167
+ title: phosphate ion concentration assay
+ OBI:0003168:
+ text: OBI:0003168
+ description: A potassium(1+) assay that measures the concentration of potassium(1+)
+ in a specimen.
+ meaning: OBI:0003168
+ title: potassium(1+) concentration assay
+ OBI:0003170:
+ text: OBI:0003170
+ description: A reticulocyte assay that measures the percentage of reticulocytes
+ in a specimen.
+ meaning: OBI:0003170
+ title: reticulocyte percentage assay
+ OBI:0003171:
+ text: OBI:0003171
+ description: A sodium(1+) assay that measures the concentration of sodium(1+)
+ in a specimen.
+ meaning: OBI:0003171
+ title: sodium(1+) concentration assay
+ OBI:0003172:
+ text: OBI:0003172
+ description: A thyroid stimulating hormone assay that measures the concentration
+ of thyroid stimulating hormone in a specimen.
+ meaning: OBI:0003172
+ title: thyroid stimulating hormone concentration assay
+ OBI:0003173:
+ text: OBI:0003173
+ description: A triglyceride assay that measures the concentration of triglycerides
+ in a specimen.
+ meaning: OBI:0003173
+ title: triglyceride concentration assay
+ OBI:0003174:
+ text: OBI:0003174
+ description: A 3,3',5'-triiodothyronine assay that measures the concentration
+ of 3,3',5'-triiodothyronine in a specimen.
+ meaning: OBI:0003174
+ title: 3,3',5'-triiodothyronine concentration assay
+ OBI:0003175:
+ text: OBI:0003175
+ description: A fibrinogen assay that measures the concentration of fibrinogen
+ in a specimen.
+ meaning: OBI:0003175
+ title: fibrinogen concentration assay
+ OBI:0003176:
+ text: OBI:0003176
+ description: A thyroxine assay that measures the concentration of free thyroxine
+ in a specimen.
+ meaning: OBI:0003176
+ title: free thyroxine concentration assay
+ OBI:0003177:
+ text: OBI:0003177
+ description: A thyroxine assay that measures the concentration of total thyroxine
+ in a specimen.
+ meaning: OBI:0003177
+ title: total thyroxine concentration assay
+ OBI:0003180:
+ text: OBI:0003180
+ description: A bilirubin IXalpha assay that measures the concentration of
+ direct bilirubin in a specimen.
+ meaning: OBI:0003180
+ title: direct bilirubin concentration assay
+ OBI:0003181:
+ text: OBI:0003181
+ description: A bilirubin IXalpha assay that measures the concentration of
+ indirect bilirubin in a specimen.
+ meaning: OBI:0003181
+ title: indirect bilirubin concentration assay
+ OBI:0003182:
+ text: OBI:0003182
+ description: A bilirubin IXalpha assay that measures the concentration of
+ total bilirubin in a specimen.
+ meaning: OBI:0003182
+ title: total bilirubin concentration assay
+ OBI:0003183:
+ text: OBI:0003183
+ description: A hemoglobin assay that measures the average concentration of
+ hemoglobin in a population of erythrocytes.
+ meaning: OBI:0003183
+ title: mean cell hemoglobin assay
+ OBI:0003184:
+ text: OBI:0003184
+ description: A hemoglobin assay that measures the concentration of hemoglobin
+ in a specimen.
+ meaning: OBI:0003184
+ title: mean cell hemoglobin concentration assay
+ OBI:0003185:
+ text: OBI:0003185
+ description: A platelet assay that measures the average volume of platelets
+ in a specimen.
+ meaning: OBI:0003185
+ title: mean platelet volume assay
+ OBI:0003186:
+ text: OBI:0003186
+ description: A neutrophil assay that measures the number of immature neutrophils
+ in a specimen.
+ meaning: OBI:0003186
+ title: immature neutrophil count assay
+ OBI:0003187:
+ text: OBI:0003187
+ description: An neutrophil assay that measures the percentage of immature
+ neutrophils in a specimen.
+ meaning: OBI:0003187
+ title: immature neutrophil percentage assay
+ OBI:0003188:
+ text: OBI:0003188
+ description: An erythrocyte assay that measures the percentage of nucleated
+ erythrocytes in a specimen.
+ meaning: OBI:0003188
+ title: nucleated erythrocyte percentage assay
+ OBI:0003189:
+ text: OBI:0003189
+ description: An erythrocyte assay that measures the average volume of erythrocytes
+ in a specimen.
+ meaning: OBI:0003189
+ title: mean cell volume assay
+ OBI:0003190:
+ text: OBI:0003190
+ description: A cytometry assay that measures the abundance and/or characteristics
+ of erythrocytes.
+ meaning: OBI:0003190
+ title: erythrocyte assay
+ OBI:0003191:
+ text: OBI:0003191
+ description: A hematocrit assay that measures the percentage of erythrocytes
+ in a specimen by manual processes.
+ meaning: OBI:0003191
+ title: manual hematocrit assay
+ OBI:0003192:
+ text: OBI:0003192
+ description: An analyte assay that measures the abundance of adiponectin
+ meaning: OBI:0003192
+ title: adiponectin assay
+ OBI:0003193:
+ text: OBI:0003193
+ description: An adiponectin assay that measures the concentration of adiponectin
+ in a specimen.
+ meaning: OBI:0003193
+ title: adiponectin concentration assay
+ OBI:0003194:
+ text: OBI:0003194
+ description: An analyte assay that measures the abundance of creatine
+ meaning: OBI:0003194
+ title: creatine assay
+ OBI:0003195:
+ text: OBI:0003195
+ description: A creatine assay that measures the concentration of creatine
+ in a specimen.
+ meaning: OBI:0003195
+ title: creatine concentration assay
+ OBI:0003196:
+ text: OBI:0003196
+ description: An analyte assay that measures the abundance of estradiol
+ meaning: OBI:0003196
+ title: estradiol assay
+ OBI:0003197:
+ text: OBI:0003197
+ description: An estradiol assay that measures the concentration of estradiol
+ in a specimen.
+ meaning: OBI:0003197
+ title: estradiol concentration assay
+ OBI:0003202:
+ text: OBI:0003202
+ description: An analyte assay that measures the abundance of leptin
+ meaning: OBI:0003202
+ title: leptin assay
+ OBI:0003203:
+ text: OBI:0003203
+ description: An leptin assay that measures the concentration of leptin in
+ a specimen.
+ meaning: OBI:0003203
+ title: leptin concentration assay
+ OBI:0003204:
+ text: OBI:0003204
+ description: An analyte assay that measures the abundance of lipoprotein
+ meaning: OBI:0003204
+ title: lipoprotein concentration assay
+ OBI:0003205:
+ text: OBI:0003205
+ description: A lipoprotein concentration assay that measures the concentration
+ of high-density lipoprotein in a specimen.
+ meaning: OBI:0003205
+ title: high-density lipoprotein concentration assay
+ OBI:0003206:
+ text: OBI:0003206
+ description: A lipoprotein concentration assay that measures the concentration
+ of low-density lipoprotein in a specimen.
+ meaning: OBI:0003206
+ title: low-density lipoprotein concentration assay
+ OBI:0003207:
+ text: OBI:0003207
+ description: A lipoprotein concentration assay that measures the concentration
+ of very-low-density lipoprotein in a specimen.
+ meaning: OBI:0003207
+ title: very-low-density lipoprotein concentration assay
+ OBI:0003208:
+ text: OBI:0003208
+ description: An analyte assay that measures the abundance of luteinizing hormone
+ meaning: OBI:0003208
+ title: luteinizing hormone assay
+ OBI:0003209:
+ text: OBI:0003209
+ description: A luteinizing hormone assay that measures the concentration of
+ luteinizing hormone in a specimen.
+ meaning: OBI:0003209
+ title: luteinizing hormone concentration assay
+ OBI:0003210:
+ text: OBI:0003210
+ description: An analyte assay that measures the abundance of nitrite
+ meaning: OBI:0003210
+ title: nitrite assay
+ OBI:0003211:
+ text: OBI:0003211
+ description: A nitrite assay that measures the concentration of nitrite in
+ a specimen.
+ meaning: OBI:0003211
+ title: nitrite concentration assay
+ OBI:0003212:
+ text: OBI:0003212
+ description: An analyte assay that measures the abundance of phospholipid
+ meaning: OBI:0003212
+ title: phospholipid assay
+ OBI:0003213:
+ text: OBI:0003213
+ description: A phospholipid assay that measures the concentration of phospholipids
+ in a specimen.
+ meaning: OBI:0003213
+ title: phospholipid concentration assay
+ OBI:0003214:
+ text: OBI:0003214
+ description: An analyte assay that measures the abundance of progesterone
+ meaning: OBI:0003214
+ title: progesterone assay
+ OBI:0003215:
+ text: OBI:0003215
+ description: A progesterone assay that measures the concentration of progesterone
+ in a specimen.
+ meaning: OBI:0003215
+ title: progesterone concentration assay
+ OBI:0003216:
+ text: OBI:0003216
+ description: An analyte assay that measures the abundance of testosterone
+ meaning: OBI:0003216
+ title: testosterone assay
+ OBI:0003217:
+ text: OBI:0003217
+ description: A testosterone assay that measures the concentration of testosterone
+ in a specimen.
+ meaning: OBI:0003217
+ title: testosterone concentration assay
+ OBI:0003218:
+ text: OBI:0003218
+ description: An analyte assay that measures the abundance of bile salt
+ meaning: OBI:0003218
+ title: bile salt assay
+ OBI:0003219:
+ text: OBI:0003219
+ description: A bile salt assay that measures the concentration of bile salt
+ in a specimen.
+ meaning: OBI:0003219
+ title: bile salt concentration assay
+ OBI:0003220:
+ text: OBI:0003220
+ description: An analyte assay that measures the abundance of fatty acid
+ meaning: OBI:0003220
+ title: fatty acid assay
+ OBI:0003221:
+ text: OBI:0003221
+ description: A fatty acid assay that measures the concentration of free fatty
+ acids in a specimen.
+ meaning: OBI:0003221
+ title: free fatty acid concentration assay
+ OBI:0003222:
+ text: OBI:0003222
+ description: An analyte assay that measures the abundance of insulin
+ meaning: OBI:0003222
+ title: insulin assay
+ OBI:0003223:
+ text: OBI:0003223
+ description: A insulin assay that measures the concentration of insulin in
+ a specimen.
+ meaning: OBI:0003223
+ title: insulin concentration assay
+ OBI:0003224:
+ text: OBI:0003224
+ description: An analyte assay that measures the abundance of follicle stimulating
+ hormone
+ meaning: OBI:0003224
+ title: follicle stimulating hormone assay
+ OBI:0003225:
+ text: OBI:0003225
+ description: A follicle stimulating hormone assay that measures the concentration
+ of follicle stimulating hormone in a specimen.
+ meaning: OBI:0003225
+ title: follicle stimulating hormone concentration assay
+ OBI:0003226:
+ text: OBI:0003226
+ description: A lymphocyte assay that measures the number of lymphocytes and
+ large unstained cells in a specimen.
+ meaning: OBI:0003226
+ title: total lymphocyte count assay
+ OBI:0003227:
+ text: OBI:0003227
+ description: A lymphocyte assay that measures the percentage of lymphocytes
+ and large unstained cells in a specimen.
+ meaning: OBI:0003227
+ title: total lymphocyte percentage assay
+ OBI:0003228:
+ text: OBI:0003228
+ description: A cytometry assay that detects the presence of cells that secrete
+ a material of interest (analyte). In the assay, a plate is coated with an
+ antibody specific to the analyte of interest. These antibodies capture the
+ analytes secreted by the cells. The analytes are then detected using fluorescent
+ labeled secondary antibodies.
+ meaning: OBI:0003228
+ title: fluorescent immunospot assay
+ OBI:0003229:
+ text: OBI:0003229
+ description: A proteomics profiling assay that detects proteins in a blood
+ plasma specimen.
+ meaning: OBI:0003229
+ title: plasma proteomics assay
+ OBI:0003230:
+ text: OBI:0003230
+ description: A flow cytometry assay that detects the presence/amount of antigen-specific
+ T cells without the need to identify their cytokine production. Instead,
+ antigen-specific T cells are detected on the basis of upregulation of TCR
+ stimulation-induced surface markers.
+ meaning: OBI:0003230
+ title: T cell activation induced marker assay
+ OBI:0003232:
+ text: OBI:0003232
+ description: An assay that has a cerebrospinal fluid specimen as evaluant.
+ meaning: OBI:0003232
+ title: cerebrospinal fluid assay
+ OBI:0003233:
+ text: OBI:0003233
+ description: An assay that has an endotracheal aspirate specimen as evaluant.
+ meaning: OBI:0003233
+ title: endotracheal aspirate assay
+ OBI:0003234:
+ text: OBI:0003234
+ description: An assay that has an induced sputum specimen as evaluant.
+ meaning: OBI:0003234
+ title: induced sputum assay
+ OBI:0003235:
+ text: OBI:0003235
+ description: An assay that has a lung specimen as evaluant.
+ meaning: OBI:0003235
+ title: lung assay
+ OBI:0003236:
+ text: OBI:0003236
+ description: An assay that has a milk specimen as evaluant.
+ meaning: OBI:0003236
+ title: milk assay
+ OBI:0003237:
+ text: OBI:0003237
+ description: An assay that has a feces specimen as evaluant.
+ meaning: OBI:0003237
+ title: feces assay
+ OBI:0003238:
+ text: OBI:0003238
+ description: An assay that has an umbilical cord blood specimen as evaluant.
+ meaning: OBI:0003238
+ title: umbilical cord blood assay
+ OBI:0003239:
+ text: OBI:0003239
+ description: An assay that has a saliva specimen as evaluant.
+ meaning: OBI:0003239
+ title: saliva assay
+ OBI:0003240:
+ text: OBI:0003240
+ description: An organism detection assay that detects microorganisms in a
+ cerebrospinal fluid specimen.
+ meaning: OBI:0003240
+ title: cerebrospinal fluid microbiology assay
+ OBI:0003241:
+ text: OBI:0003241
+ description: An organism detection assay that detects microorganisms in an
+ endotracheal aspirate specimen.
+ meaning: OBI:0003241
+ title: endotracheal tube aspirate microbiology assay
+ OBI:0003242:
+ text: OBI:0003242
+ description: An organism detection assay that detects microorganisms in an
+ induced sputum specimen.
+ meaning: OBI:0003242
+ title: induced sputum microbiology assay
+ OBI:0003282:
+ text: OBI:0003282
+ description: An organism detection assay that detects microorganisms in a
+ lung specimen.
+ meaning: OBI:0003282
+ title: lung microbiology assay
+ OBI:0003283:
+ text: OBI:0003283
+ description: An organism detection assay that detects microorganisms in a
+ pleural fluid specimen.
+ meaning: OBI:0003283
+ title: pleural fluid microbiology assay
+ OBI:0003284:
+ text: OBI:0003284
+ description: An organism detection assay that detects microorganisms in an
+ umbilical cord blood specimen.
+ meaning: OBI:0003284
+ title: umbilical cord blood microbiology assay
+ OBI:0003285:
+ text: OBI:0003285
+ description: An organism detection assay that detects microorganisms in a
+ nasopharyngeal or oropharyngeal swab specimen.
+ meaning: OBI:0003285
+ title: nasopharyngeal or oropharyngeal swab microbiology assay
+ OBI:0003286:
+ text: OBI:0003286
+ description: An organism detection assay that detects microorganisms in a
+ urine specimen.
+ meaning: OBI:0003286
+ title: urine microbiology assay
+ OBI:0003287:
+ text: OBI:0003287
+ description: A real time polymerase chain reaction assay in which multiple
+ DNA sequences are amplified in a single cycle.
+ meaning: OBI:0003287
+ title: multiplex real time polymerase chain reaction assay
+ OBI:0003288:
+ text: OBI:0003288
+ description: A real time reverse-transcription polymerase chain reaction assay
+ in which multiple DNA sequences are amplified in a single cycle.
+ meaning: OBI:0003288
+ title: multiplex real time reverse-transcription polymerase chain reaction
+ assay
+ OBI:0003290:
+ text: OBI:0003290
+ description: An assay that evaluates host-to-mosquito transmission of a parasite
+ organism by feeding a specimen of host blood infected with the parasite
+ organism to a collection of mosquitoes through a mosquito membrane feeding
+ device and, after a given time, dissecting the mosquitoes and counting the
+ number of parasite organisms within them.
+ meaning: OBI:0003290
+ title: mosquito membrane feeding assay
+ OBI:0003292:
+ text: OBI:0003292
+ description: A cytometric bead array assay that detects epitope specific granulysin
+ release by T cells.
+ meaning: OBI:0003292
+ title: cytometric bead array assay measuring epitope specific granulysin release
+ by T cells
+ OBI:0003293:
+ text: OBI:0003293
+ description: A cytometric bead array assay that detects epitope specific perforin
+ release by T cells.
+ meaning: OBI:0003293
+ title: cytometric bead array assay measuring epitope specific perforin release
+ by T cells
+ OBI:0003294:
+ text: OBI:0003294
+ description: A microscopy assay that uses staining to identify acid-fast organisms
+ in a specimen and does not require heating.
+ meaning: OBI:0003294
+ title: modified acid-fast stain microscopy assay
+ OBI:0003296:
+ text: OBI:0003296
+ description: An assay that evaluates a blood specimen for antibodies currently
+ being produced by lymphocytes in the specimen, by separating peripheral
+ blood mononuclear cells, culturing them, and then collecting the supernatant
+ containing the antibodies secreted from those cells.
+ meaning: OBI:0003296
+ title: antibodies from lymphocyte secretions assay
+ OBI:0003297:
+ text: OBI:0003297
+ description: A DNA sequencing assay that uses tyramide signal amplification
+ (TSA) to assess distance of DNA regions to a targeted nuclear compartment
+ or protein, typically on a scale of 100-1000 nm.
+ meaning: OBI:0003297
+ title: tyramide signal amplification sequencing assay
+ OBI:0003298:
+ text: OBI:0003298
+ description: An assay for identifying DNA binding sites for a protein by fusing
+ it to Dam methylase, and expressing it so that bound DNA gets methylated.
+ The methylated DNA can then be isolated and analyzed.
+ meaning: OBI:0003298
+ title: DNA adenine methyltransferase identification assay
+ OBI:0003299:
+ text: OBI:0003299
+ description: A DNA adenine methyltransferase identification (DamID) assay
+ in which DamID-generated DNA fragments undergo high-throughput sequencing
+ to determine a protein's DNA-binding site.
+ meaning: OBI:0003299
+ title: DamID-seq
+ OBI:0003300:
+ text: OBI:0003300
+ description: A DNA sequencing assay in which nucleoli are isolated and the
+ DNA associated with them is sequenced to identify nucleoli-associating domains.
+ meaning: OBI:0003300
+ title: nucleolus-associated domain sequencing assay
+ OBI:0003301:
+ text: OBI:0003301
+ description: A Hi-C assay in which DNase I is used for digesting DNA fragments
+ rather than a restriction enzyme, which can result in a higher resolution
+ of mapped chromosome contacts.
+ meaning: OBI:0003301
+ title: DNase Hi-C assay
+ OBI:0003302:
+ text: OBI:0003302
+ description: A Hi-C assay which uses micrococcal nuclease digestion in place
+ of the restriction enzyme digestion step.
+ meaning: OBI:0003302
+ title: micro-C assay
+ OBI:0003303:
+ text: OBI:0003303
+ description: A Hi-C assay performed on massively multiplexed single-cell samples.
+ meaning: OBI:0003303
+ title: single cell combinatorial indexing Hi-C assay
+ OBI:0003304:
+ text: OBI:0003304
+ description: A Hi-C assay performed on isolated nuclei.
+ meaning: OBI:0003304
+ title: single nucleus Hi-C assay
+ OBI:0003305:
+ text: OBI:0003305
+ description: A Hi-C assay performed on a single cell.
+ meaning: OBI:0003305
+ title: single cell Hi-C assay
+ OBI:0003306:
+ text: OBI:0003306
+ description: A Hi-C assay in which the sample that is sequenced is derived
+ from a collection of cells, such as a tissue sample or entire cell culture,
+ and therefore provides results representative of the aggregate of sample
+ cells.
+ meaning: OBI:0003306
+ title: bulk Hi-C assay
+ OBI:0003307:
+ text: OBI:0003307
+ description: A Hi-C assay that assesses interactions between multiple DNA
+ fragments rather than only pairwise interactions as in traditional Hi-C.
+ The experimental procedure of cross-linking, digestion, and ligation is
+ performed similarly to traditional Hi-C, but after DNA is purified a long-read
+ library is produced in which many ligated fragments may be contained in
+ a single molecule. The library is then sequenced on a long read sequencer.
+ meaning: OBI:0003307
+ title: multi-contact Hi-C assay
+ OBI:0003309:
+ text: OBI:0003309
+ description: A DNA sequencing assay designed to detect interacting genomic
+ regions. Rather than the traditional Hi-C approach of digestion and proximity
+ ligation, the procedure involves transposase-mediated insertion of an oligonucleotide
+ linker between the pair of interacting regions.
+ meaning: OBI:0003309
+ title: transposase-mediated analysis of chromatin looping assay
+ OBI:0003310:
+ text: OBI:0003310
+ description: A sequencing assay designed to detect multi-way interactions
+ between nucleic acids. The procedure involves crosslinking nuclei, and then
+ splitting the lysate among wells in a 96-well or other multi-well plate.
+ A different barcode is ligated to the fragments in each well, and the lysates
+ are pooled together again. This sequence of splitting, tagging, and re-combining
+ is repeated several times so that fragments with the same sequences of barcodes
+ represent fragments that have co-associated throughout the experiment. Finally,
+ a sequencing library is constructed and high-throughput sequencing is performed.
+ meaning: OBI:0003310
+ title: split-pool recognition of interactions and tag extension assay
+ OBI:0003311:
+ text: OBI:0003311
+ description: A split-pool recognition of interactions and tag extension (SPRITE)
+ assay that only assays interactions between regions of genomic DNA.
+ meaning: OBI:0003311
+ title: DNA split-pool recognition of interactions and tag extension assay
+ OBI:0003312:
+ text: OBI:0003312
+ description: A split-pool recognition of interactions and tag extension (SPRITE)
+ assay in which RNA in the cross-linked complexes is converted to cDNA before
+ the initial splitting step, allowing analysis of RNA-DNA interactions.
+ meaning: OBI:0003312
+ title: RNA-DNA split-pool recognition of interactions and tag extension assay
+ OBI:0003313:
+ text: OBI:0003313
+ description: A DNA sequencing assay designed to analyze 3D chromatin structure
+ without relying on digestion and ligation. The procedure involves cryosectioning
+ samples in random orientation, and then single nuclear profiles are isolated
+ by laser microdissection. Each nuclear profile then undergoes high-throughput
+ sequencing, and subsequent analysis can generate a matrix of inferred proximity
+ between genomic regions.
+ meaning: OBI:0003313
+ title: genome architecture mapping assay
+ OBI:0003314:
+ text: OBI:0003314
+ description: A nuclear ligation assay for probing RNA-DNA interactions in
+ the nucleus. Nuclei are crosslinked, and RNA fragments are ligated to proximal
+ DNA fragments via a special linker molecule. After reverse transcription,
+ high-throughput sequencing is performed.
+ meaning: OBI:0003314
+ title: mapping RNA-genome interactions assay
+ OBI:0003315:
+ text: OBI:0003315
+ description: A T cell epitope specific cytokine production assay that detects
+ amphiregulin production by T cells.
+ meaning: OBI:0003315
+ title: assay measuring epitope specific amphiregulin production by T cells
+ OBI:0003316:
+ text: OBI:0003316
+ description: An enzyme-linked immunosorbent assay that detects amphiregulin
+ production by T cells.
+ meaning: OBI:0003316
+ title: ELISA measuring epitope specific amphiregulin production by T cells
+ OBI:0003321:
+ text: OBI:0003321
+ description: A blood microbiology assay that detects a microorganism in a
+ venous blood specimen.
+ meaning: OBI:0003321
+ title: venous blood microbiology assay
+ OBI:0003323:
+ text: OBI:0003323
+ description: A B cell epitope assay that measures the binding of an antibody
+ receptor to an epitope using a high throughput multiplexed assay.
+ meaning: OBI:0003323
+ title: high throughput multiplexed assay measuring binding of a B cell epitope:antibody
+ complex
+ OBI:0003324:
+ text: OBI:0003324
+ description: A T cell epitope assay that measures the binding of T cell receptor
+ to an epitope using a high throughput multiplexed assay.
+ meaning: OBI:0003324
+ title: high throughput multiplexed assay measuring binding of a T cell epitope:MHC:TCR
+ complex
+ OBI:0003325:
+ text: OBI:0003325
+ description: A MHC ligand assay that detects the binding of a ligand to an
+ MHC molecule using a high throughput multiplexed assay.
+ meaning: OBI:0003325
+ title: high throughput multiplexed assay measuring binding of a MHC:ligand
+ complex
+ OBI:0003326:
+ text: OBI:0003326
+ description: A MHC ligand assay that determines what ligands are processed
+ and loaded onto MHC molecules by eluting ligands and identifying them using
+ a high throughput multiplexed assay.
+ meaning: OBI:0003326
+ title: high throughput multiplexed assay measuring MHC ligand processing and
+ presentation
+ OBI:0003368:
+ text: OBI:0003368
+ description: An assay (A) that is part of another assay (B), where the target
+ entities of A and B are disjoint, and the target entity of A is a proxy
+ for the target of assay B.
+ meaning: OBI:0003368
+ title: detection technique
+ OBI:0003372:
+ text: OBI:0003372
+ description: A T cell epitope specific cytokine production assay that detects
+ lymphotactin production by T cells.
+ meaning: OBI:0003372
+ title: assay measuring epitope specific lymphotactin production by T cells
+ OBI:0003373:
+ text: OBI:0003373
+ description: An enzyme-linked immunosorbent assay that detects lymphotactin
+ production by T cells.
+ meaning: OBI:0003373
+ title: ELISA measuring epitope specific lymphotactin production by T cells
+ OBI:0003375:
+ text: OBI:0003375
+ description: An assay that combines electrophysiological, transcriptomic,
+ and morphological characterization of individual neurons. In this approach,
+ patch-clamp is used to generate an electrophysiological recording of the
+ neuron, then the neuron's cytoplasm and/or nucleus is collected and processed
+ for RNAseq, and finally the cell is simultaneously filled with a dye that
+ allows for subsequent morphological reconstruction.
+ meaning: OBI:0003375
+ title: patch-seq assay
+ OBI:0003376:
+ text: OBI:0003376
+ description: 'A single-cell transcription profiling by RNA sequencing assay
+ that analyzes mRNA transcripts from droplets of individual cells. The process
+ involves the following steps: (1) prepare a single-cell suspension from
+ a tissue; (2) co-encapsulate each cell with a distinctly barcoded microparticle
+ (bead) in a nanoliter-scale droplet; (3) lyse cells after they have been
+ isolated in droplets; (4) capture a cell’s mRNAs on its companion microparticle,
+ forming STAMPs (single-cell transcriptomes attached to microparticles);
+ (5) reverse-transcribe, amplify, and sequence.'
+ meaning: OBI:0003376
+ title: droplet-based single-cell RNA sequencing assay
+ OBI:0003377:
+ text: OBI:0003377
+ description: An assay that uses combinatorial indexing to generate a library
+ of cDNA and open chromatin gDNA fragments by tagmenting a single nuclei
+ and open chromatin, and encapsulating those in a droplet including both
+ an oligo-dT-containing barcoded bead and a splint oligonucleotide, which
+ links the tagmented gDNA fragments to the bead which capture both mRNAs
+ and open chromatin fragments.
+ meaning: OBI:0003377
+ title: single-nucleus chromatin accessibility and mRNA expression sequencing
+ 2 assay
+ OBI:0003378:
+ text: OBI:0003378
+ description: A single cell transcription profiling by RNA sequencing assay
+ wherein cells are lysed and their recovered RNA is hybridized to an oligo(dT)
+ that primes a reverse transcription reaction, the outcome of which are cDNA’s
+ that have PCR handles on both ends. The cDNA's are then amplified using
+ PCR, and the products are sequenced.
+ meaning: OBI:0003378
+ title: switching mechanism at the 5' end of RNA template sequencing assay
+ OBI:0003379:
+ text: OBI:0003379
+ description: A single cell transcription profiling by RNA sequencing assay
+ that is a variation on the switching mechanism at the 5' end of RNA template
+ sequencing assay (SMARTseq) that allows the generation of full-length cDNA
+ and sequencing libraries by using standard reagents.
+ meaning: OBI:0003379
+ title: switching mechanism at the 5' end of RNA template sequencing 2 assay
+ OBI:0003381:
+ text: OBI:0003381
+ description: A blood microbiology assay that detects microorganisms in a placental
+ blood specimen.
+ meaning: OBI:0003381
+ title: placental blood microbiology assay
+ OBI:0003412:
+ text: OBI:0003412
+ description: A DNA sequencing assay that uses microfluidics to partition and
+ barcode high molecular weight DNA such that short reads derived from fragments
+ of the large piece of DNA can be assembled within the context of the high
+ molecular weight piece of DNA they are derived from, facilitating the use
+ of short read data to sequence and assemble large genomes.
+ meaning: OBI:0003412
+ title: linked-read sequencing assay
+ OBI:0003418:
+ text: OBI:0003418
+ description: An antigen specific antibodies assay that has a blood specimen
+ as evaluant.
+ meaning: OBI:0003418
+ title: antigen specific antibodies in blood assay
+ OBI:0003419:
+ text: OBI:0003419
+ description: An antigen specific antibodies assay that has a milk specimen
+ as evaluant.
+ meaning: OBI:0003419
+ title: antigen specific antibodies in milk assay
+ OBI:0003422:
+ text: OBI:0003422
+ description: An assay in which the level of catalytic activity of an enzyme
+ is determined.
+ meaning: OBI:0003422
+ title: enzymatic activity level assay
+ OBI:0003423:
+ text: OBI:0003423
+ description: An enzymatic activity level assay that measures the activity
+ of 5'-nucleotidase in a sample.
+ meaning: OBI:0003423
+ title: 5'-nucleotidase activity level assay
+ OBI:0003424:
+ text: OBI:0003424
+ description: An enzymatic activity level assay that measures the activity
+ of alanine aminotransferase in a sample.
+ meaning: OBI:0003424
+ title: alanine aminotransferase activity level assay
+ OBI:0003425:
+ text: OBI:0003425
+ description: An enzymatic activity level assay that measures the activity
+ of alkaline phosphatase in a sample.
+ meaning: OBI:0003425
+ title: alkaline phosphatase activity level assay
+ OBI:0003426:
+ text: OBI:0003426
+ description: An enzymatic activity level assay that measures the activity
+ of amylase in a sample.
+ meaning: OBI:0003426
+ title: amylase activity level assay
+ OBI:0003427:
+ text: OBI:0003427
+ description: An enzymatic activity level assay that measures the activity
+ of aspartate aminotransferase in a sample.
+ meaning: OBI:0003427
+ title: aspartate aminotransferase activity level assay
+ OBI:0003428:
+ text: OBI:0003428
+ description: An enzymatic activity level assay that measures the activity
+ of cholinesterase in a sample.
+ meaning: OBI:0003428
+ title: cholinesterase activity level assay
+ OBI:0003429:
+ text: OBI:0003429
+ description: An enzymatic activity level assay that measures the activity
+ of creatine kinase in a sample.
+ meaning: OBI:0003429
+ title: creatine kinase activity level assay
+ OBI:0003430:
+ text: OBI:0003430
+ description: An enzymatic activity level assay that measures the activity
+ of gamma-glutamyltransferase in a sample.
+ meaning: OBI:0003430
+ title: gamma-glutamyltransferase activity level assay
+ OBI:0003431:
+ text: OBI:0003431
+ description: An enzymatic activity level assay that measures the activity
+ of glutamate dehydrogenase in a sample.
+ meaning: OBI:0003431
+ title: glutamate dehydrogenase activity level assay
+ OBI:0003432:
+ text: OBI:0003432
+ description: An enzymatic activity level assay that measures the activity
+ of isocitrate dehydrogenase in a sample.
+ meaning: OBI:0003432
+ title: isocitrate dehydrogenase activity level assay
+ OBI:0003433:
+ text: OBI:0003433
+ description: An enzymatic activity level assay that measures the activity
+ of lactate dehydrogenase in a sample.
+ meaning: OBI:0003433
+ title: lactate dehydrogenase activity level assay
+ OBI:0003434:
+ text: OBI:0003434
+ description: An enzymatic activity level assay that measures the activity
+ of sorbitol dehydrogenase in a sample.
+ meaning: OBI:0003434
+ title: sorbitol dehydrogenase activity level assay
+ OBI:0003435:
+ text: OBI:0003435
+ description: An enzymatic activity level assay that measures the activity
+ of Acyl-CoA oxidase in a sample.
+ meaning: OBI:0003435
+ title: acyl-CoA oxidase activity level assay
+ OBI:0003436:
+ text: OBI:0003436
+ description: An enzymatic activity level assay that measures the activity
+ of N-acetyl-beta-glucosaminidase in a sample.
+ meaning: OBI:0003436
+ title: N-acetyl-beta-glucosaminidase activity level assay
+ OBI:0003437:
+ text: OBI:0003437
+ description: An enzymatic activity level assay that measures the activity
+ of ribonuclease in a sample.
+ meaning: OBI:0003437
+ title: ribonuclease activity level assay
+ OBI:0003438:
+ text: OBI:0003438
+ description: An enzymatic activity level assay that measures the activity
+ of galactosidase in a sample.
+ meaning: OBI:0003438
+ title: galactosidase activity level assay
+ OBI:0003457:
+ text: OBI:0003457
+ description: An epitope protection from infectious challenge experiment that
+ determines the success of the epitope intervention based on increased survival
+ of the host compared to controls.
+ meaning: OBI:0003457
+ title: epitope protection from infectious challenge experiment based on survival
+ OBI:0003458:
+ text: OBI:0003458
+ description: An epitope protection from tumor challenge experiment in which
+ the readout is a reduction in the presence of malignant cells in the host
+ compared to controls.
+ meaning: OBI:0003458
+ title: epitope protection from tumor challenge experiment based on burden
+ OBI:0003459:
+ text: OBI:0003459
+ description: An epitope protection from tumor challenge experiment that determines
+ the success of the epitope intervention based on increased survival of the
+ host compared to controls.
+ meaning: OBI:0003459
+ title: epitope protection from tumor challenge experiment based on survival
+ OBI:0003460:
+ text: OBI:0003460
+ description: An in vivo assay measuring T cell epitope specific protection
+ from pathogen challenge.
+ meaning: OBI:0003460
+ title: in vivo assay measuring T cell epitope specific protection from pathogen
+ challenge
+ OBI:0003461:
+ text: OBI:0003461
+ description: An in vivo assay measuring T cell epitope specific protection
+ from tumor challenge.
+ meaning: OBI:0003461
+ title: in vivo assay measuring T cell epitope specific protection from tumor
+ challenge
+ OBI:0003462:
+ text: OBI:0003462
+ description: An in vivo assay measuring T cell epitope specific protection
+ from a challenge other than pathogen, infection, or tumor.
+ meaning: OBI:0003462
+ title: in vivo assay measuring T cell epitope specific protection from other
+ challenge
+ OBI:0003463:
+ text: OBI:0003463
+ description: An in vivo assay measuring T cell epitope specific protection
+ from tumor challenge using survival.
+ meaning: OBI:0003463
+ title: in vivo assay measuring T cell epitope specific survival after tumor
+ challenge
+ OBI:0003464:
+ text: OBI:0003464
+ description: An in vivo assay measuring T cell epitope specific protection
+ from pathogen challenge using survival.
+ meaning: OBI:0003464
+ title: in vivo assay measuring T cell epitope specific survival after pathogen
+ challenge
+ OBI:0003465:
+ text: OBI:0003465
+ description: An in vivo assay measuring B cell epitope specific protection
+ from pathogen challenge.
+ meaning: OBI:0003465
+ title: in vivo assay measuring B cell epitope specific protection from pathogen
+ challenge
+ OBI:0003466:
+ text: OBI:0003466
+ description: An in vivo assay measuring B cell epitope specific protection
+ from tumor challenge.
+ meaning: OBI:0003466
+ title: in vivo assay measuring B cell epitope specific protection from tumor
+ challenge
+ OBI:0003467:
+ text: OBI:0003467
+ description: An in vivo assay measuring B cell epitope specific protection
+ from a challenge other than pathogen, infection, or tumor.
+ meaning: OBI:0003467
+ title: in vivo assay measuring B cell epitope specific protection from other
+ challenge
+ OBI:0003468:
+ text: OBI:0003468
+ description: An in vivo assay measuring B cell epitope specific protection
+ from pathogen challenge using survival.
+ meaning: OBI:0003468
+ title: in vivo assay measuring B cell epitope specific survival after pathogen
+ challenge
+ OBI:0003469:
+ text: OBI:0003469
+ description: An in vivo assay measuring B cell epitope specific protection
+ from tumor challenge using survival.
+ meaning: OBI:0003469
+ title: in vivo assay measuring B cell epitope specific survival after tumor
+ challenge
+ OBI:0003470:
+ text: OBI:0003470
+ description: An in vivo assay measuring a T cell epitope specific protection
+ from a pathogen challenge after adoptive transfer of epitope specific antibodies
+ or B cells.
+ meaning: OBI:0003470
+ title: in vivo assay measuring T cell epitope specific protection from pathogen
+ challenge resulting from the adoptive transfer of epitope specific T cells
+ OBI:0003471:
+ text: OBI:0003471
+ description: An in vivo assay measuring T cell epitope specific protection
+ from pathogen challenge resulting from the adoptive transfer of epitope
+ specific T cells using survival.
+ meaning: OBI:0003471
+ title: in vivo assay measuring T cell epitope specific pathogen protection
+ from challenge resulting from the adoptive transfer of epitope specific
+ T cells based on survival
+ OBI:0003472:
+ text: OBI:0003472
+ description: An in vivo assay measuring a T cell epitope specific protection
+ from a tumor challenge after adoptive transfer of epitope specific T cells.
+ meaning: OBI:0003472
+ title: in vivo assay measuring T cell epitope specific protection from tumor
+ challenge resulting from the adoptive transfer of epitope specific T cells
+ OBI:0003473:
+ text: OBI:0003473
+ description: An in vivo assay measuring T cell epitope specific protection
+ from tumor challenge resulting from the adoptive transfer of epitope specific
+ T cells using survival.
+ meaning: OBI:0003473
+ title: in vivo assay measuring T cell epitope specific protection from tumor
+ challenge resulting from the adoptive transfer of epitope specific T cells
+ based on survival
+ OBI:0003474:
+ text: OBI:0003474
+ description: An in vivo assay measuring a T cell epitope specific protection
+ from other challenge after adoptive transfer of epitope specific T cells.
+ meaning: OBI:0003474
+ title: in vivo assay measuring T cell epitope specific protection from other
+ challenge resulting from the adoptive transfer of epitope specific T cells
+ OBI:0003475:
+ text: OBI:0003475
+ description: An in vivo assay measuring a B cell epitope specific protection
+ from a pathogen challenge after adoptive transfer of epitope specific antibodies
+ or B cells.
+ meaning: OBI:0003475
+ title: in vivo assay measuring B cell epitope specific protection from pathogen
+ challenge resulting from the adoptive transfer of epitope specific antibodies
+ or B cells
+ OBI:0003476:
+ text: OBI:0003476
+ description: An in vivo assay measuring B cell epitope specific protection
+ from pathogen challenge resulting from the adoptive transfer of epitope
+ specific antibodies or B cells using survival.
+ meaning: OBI:0003476
+ title: in vivo assay measuring B cell epitope specific pathogen protection
+ from challenge resulting from the adoptive transfer of epitope specific
+ antibodies or B cells based on survival
+ OBI:0003477:
+ text: OBI:0003477
+ description: An in vivo assay measuring a B cell epitope specific protection
+ from a tumor challenge after adoptive transfer of epitope specific antibodies
+ or B cells.
+ meaning: OBI:0003477
+ title: in vivo assay measuring B cell epitope specific protection from tumor
+ challenge resulting from the adoptive transfer of epitope specific antibodies
+ or B cells
+ OBI:0003478:
+ text: OBI:0003478
+ description: An in vivo assay measuring B cell epitope specific protection
+ from tumor challenge resulting from the adoptive transfer of epitope specific
+ antibodies or B cells using survival.
+ meaning: OBI:0003478
+ title: in vivo assay measuring B cell epitope specific protection from tumor
+ challenge resulting from the adoptive transfer of epitope specific antibodies
+ or B cells based on survival
+ OBI:0003479:
+ text: OBI:0003479
+ description: An in vivo assay measuring a B cell epitope specific protection
+ from other challenge after adoptive transfer of epitope specific antibodies
+ or B cells.
+ meaning: OBI:0003479
+ title: in vivo assay measuring B cell epitope specific protection from other
+ challenge resulting from the adoptive transfer of epitope specific antibodies
+ or B cells
+ OBI:0003480:
+ text: OBI:0003480
+ description: An organism detection assay that identifies bacteria based on
+ the differential retention of a crystal violet-iodine complex within the
+ cell wall.
+ meaning: OBI:0003480
+ title: Gram stain assay
+ OBI:0003484:
+ text: OBI:0003484
+ description: A T cell epitope specific cytokine production assay that detects
+ interleukin-25 production by T cells.
+ meaning: OBI:0003484
+ title: assay measuring epitope specific interleukin-25 production by T cells
+ OBI:0003485:
+ text: OBI:0003485
+ description: A detection of specific nucleic acid polymers with complementary
+ probes that detects interleukin-25 production by T cells.
+ meaning: OBI:0003485
+ title: detection of specific nucleic acids with complementary probes assay
+ measuring epitope specific interleukin-25 production by T cells
+ OBI:0003486:
+ text: OBI:0003486
+ description: A flow cytometry assay that detects interleukin-25 production
+ by T cells.
+ meaning: OBI:0003486
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-25
+ production by T cells
+ OBI:0003487:
+ text: OBI:0003487
+ description: An enzyme-linked immunosorbent assay that detects interleukin-25
+ production by T cells.
+ meaning: OBI:0003487
+ title: ELISA measuring epitope specific interleukin-25 production by T cells
+ OBI:0003488:
+ text: OBI:0003488
+ description: A reporter cell line analyte detection bioassay that detects
+ tumor necrosis factor superfamily cytokine production by T cells.
+ meaning: OBI:0003488
+ title: cell culture analyte detection bioassay measuring epitope specific
+ tumor necrosis factor superfamily cytokine production by T cells
+ OBI:0003498:
+ text: OBI:0003498
+ description: An assay that detects a type of organism and/or the quantity
+ of individuals of a type of organism.
+ meaning: OBI:0003498
+ title: organism detection assay
+ OBI:0003501:
+ text: OBI:0003501
+ description: A physical examination of an organism's ability to perform functional
+ activities.
+ meaning: OBI:0003501
+ title: functional assessment of individual
+ OBI:0003502:
+ text: OBI:0003502
+ description: An observational assessment of the loss of facial muscle tissue
+ due to inactivity or disease.
+ meaning: OBI:0003502
+ title: facial atrophy assessment
+ OBI:0003503:
+ text: OBI:0003503
+ description: An observational assessment of the loss of muscle tissue related
+ to tongue movement due to inactivity or disease.
+ meaning: OBI:0003503
+ title: tongue atrophy assessment
+ OBI:0003504:
+ text: OBI:0003504
+ description: A functional assessment of an individual's ability to cough forcefully.
+ meaning: OBI:0003504
+ title: forced cough assessment
+ OBI:0003505:
+ text: OBI:0003505
+ description: A functional assessment of an individual's ability to understandably
+ repeat spoken sentences.
+ meaning: OBI:0003505
+ title: speech test assessment
+ OBI:0003506:
+ text: OBI:0003506
+ description: A functional assessment of an individual's ability to touch index
+ fingers together in front of the sternum without oscillation for a specified
+ duration of time
+ meaning: OBI:0003506
+ title: finger to finger assessment
+ OBI:0003507:
+ text: OBI:0003507
+ description: A functional assessment of an individual's ability to touch their
+ own nose and then touch an examiners finger in front of them and then touch
+ their own nose once more.
+ meaning: OBI:0003507
+ title: nose to finger assessment
+ OBI:0003508:
+ text: OBI:0003508
+ description: A functional assessment of an individual's ability to accurately
+ touch a moving target with their finger and then touch their own chin a
+ number of times in a row.
+ meaning: OBI:0003508
+ title: dysmetria assessment
+ OBI:0003509:
+ text: OBI:0003509
+ description: A functional assessment of an individual's ability to alternate
+ the forearm between pronation and suppination as quickly as possible during
+ a specified duration of time
+ meaning: OBI:0003509
+ title: rapid alternating hands assessment
+ OBI:0003510:
+ text: OBI:0003510
+ description: A functional assessment of an individual's ability to touch their
+ finger-tip to thumb as many times as possible during a specified duration
+ of time.
+ meaning: OBI:0003510
+ title: finger taps assessment
+ OBI:0003511:
+ text: OBI:0003511
+ description: A functional assessment of an individual's ability to slide their
+ heel back and forth along their contralateral tibia from the patella to
+ the ankle with the contralateral leg extended.
+ meaning: OBI:0003511
+ title: heel along shin assessment
+ OBI:0003512:
+ text: OBI:0003512
+ description: A functional assessment of an individual's ability to tap their
+ heel to the midpoint of the contralateral shin a number of times.
+ meaning: OBI:0003512
+ title: heel to shin assessment
+ OBI:0003513:
+ text: OBI:0003513
+ description: An observational assesment of an individual's muscle tissue loss
+ due to inactivity or disease.
+ meaning: OBI:0003513
+ title: muscle atrophy assessment
+ OBI:0003514:
+ text: OBI:0003514
+ description: A functional assessment of an individual's ability to perform
+ muscle movement to overcome gravity or physical resistence.
+ meaning: OBI:0003514
+ title: muscle weakness assessment
+ OBI:0003515:
+ text: OBI:0003515
+ description: A functional assessment of an individual's ability to sense vibration.
+ meaning: OBI:0003515
+ title: vibratory sense assessment
+ OBI:0003516:
+ text: OBI:0003516
+ description: A functional assessment of an individual's ability to sense the
+ position of a finger or toe that has been manipulated by minimal random
+ movements.
+ meaning: OBI:0003516
+ title: position sense assessment
+ OBI:0003517:
+ text: OBI:0003517
+ description: A functional assessment of an individual's muscle contraction
+ when a muscle is triggered by a signal from a muscle spindle in response
+ to a stimulus applied to a specific trigger point on the body.
+ meaning: OBI:0003517
+ title: deep tendon reflex assessment
+ OBI:0003518:
+ text: OBI:0003518
+ description: The functional assessment of an individual's ability to maintain
+ balance, posture or upright stability.
+ meaning: OBI:0003518
+ title: limits of stability assessment
+ OBI:0003519:
+ text: OBI:0003519
+ description: A limits of stability assessment designed to assess an individual's
+ ability to maintain unsupported posture while sitting over a given time
+ period.
+ meaning: OBI:0003519
+ title: sitting posture assessment
+ OBI:0003520:
+ text: OBI:0003520
+ description: A limits of stability assessment designed to assess an individual's
+ ability to maintain a stable stance with feet 20 cm apart.
+ meaning: OBI:0003520
+ title: stance feet apart assessment
+ OBI:0003521:
+ text: OBI:0003521
+ description: A limits of stability assessment designed to assess an individual's
+ ability to maintain a stable stance with their eyes closed.
+ meaning: OBI:0003521
+ title: stance feet apart assessment, with eyes closed
+ OBI:0003522:
+ text: OBI:0003522
+ description: A limits of stability assessment designed to assess an individual's
+ ability to maintain a stable stance with feet together.
+ meaning: OBI:0003522
+ title: stance feet together assessment
+ OBI:0003523:
+ text: OBI:0003523
+ description: A limits of stability assessment designed to assess an individual's
+ ability to maintain a stable stance with feet together and eyes closed.
+ meaning: OBI:0003523
+ title: stance feet together assessment, with eyes closed
+ OBI:0003524:
+ text: OBI:0003524
+ description: A limits of stability assessment designed to assess an individual's
+ ability to maintain a stable stance with feet in tandem placement.
+ meaning: OBI:0003524
+ title: tandem stance assessment
+ OBI:0003525:
+ text: OBI:0003525
+ description: A limits of stability assessment designed to assess an individual's
+ ability to maintain a stable stance on one foot.
+ meaning: OBI:0003525
+ title: stance on one foot assessment
+ OBI:0003526:
+ text: OBI:0003526
+ description: A limits of stability assessment designed to assess an individual's
+ ability to maintain balance while walking in a straight line placing steps
+ in tandem.
+ meaning: OBI:0003526
+ title: tandem walk assessment
+ OBI:0003527:
+ text: OBI:0003527
+ description: A limits of stability assessment designed to assess an individual's
+ manner or pattern of walking.
+ meaning: OBI:0003527
+ title: gait assessment
+ OBI:0003528:
+ text: OBI:0003528
+ description: A functional assessment of an individual's lower cranial nerve
+ function via proxy of facial muscle performance.
+ meaning: OBI:0003528
+ title: bulbar assessment
+ OBI:0003529:
+ text: OBI:0003529
+ description: A functional assessment of an individual's ability to articulate
+ spoken words.
+ meaning: OBI:0003529
+ title: spontaneous speech assessment
+ OBI:0003530:
+ text: OBI:0003530
+ description: A functional assessment of an individual's ability to coordinate
+ limb movement.
+ meaning: OBI:0003530
+ title: limb coordination assessment
+ OBI:0003531:
+ text: OBI:0003531
+ description: A limb coordination assessment designed to assess an individual's
+ ability to coordinate upper limb movement.
+ meaning: OBI:0003531
+ title: upper limb coordination assessment
+ OBI:0003532:
+ text: OBI:0003532
+ description: A limb coordination assessment designed to assess an individual's
+ ability to coordinate lower limb movement.
+ meaning: OBI:0003532
+ title: lower limb coordination assessment
+ OBI:0003533:
+ text: OBI:0003533
+ description: A functional assesment of an individual's nerve performance.
+ Specifically the nerves connecting the sensory and motor structures with
+ the central nervous system.
+ meaning: OBI:0003533
+ title: nervous system functionality assessment
+ OBI:0003534:
+ text: OBI:0003534
+ description: A functional assessment of an individual's ability to maintain
+ upright body posture.
+ meaning: OBI:0003534
+ title: upright stability assessment
+ OBI:0003535:
+ text: OBI:0003535
+ description: A deep tendon reflex assessment of an individual's reaction to
+ stimulus applied to a knee joint.
+ meaning: OBI:0003535
+ title: deep tendon reflex assessment of the knee joint
+ OBI:0003536:
+ text: OBI:0003536
+ description: A physical examination of an organism through visual assesment.
+ meaning: OBI:0003536
+ title: observational assessment of individual
+ OBI:0003537:
+ text: OBI:0003537
+ description: A deep tendon reflex assessment of an individual's reaction to
+ stimulus applied to an ankle joint.
+ meaning: OBI:0003537
+ title: deep tendon reflex assessment of the ankle joint
+ OBI:0003538:
+ text: OBI:0003538
+ description: A deep tendon reflex assessment of an individual's reaction to
+ stimulus applied to a tendon of biceps brachii.
+ meaning: OBI:0003538
+ title: deep tendon reflex assessment of the tendon of biceps brachii
+ OBI:0003539:
+ text: OBI:0003539
+ description: A deep tendon reflex assessment of an individual's reaction to
+ stimulus applied to a brachioradialis.
+ meaning: OBI:0003539
+ title: deep tendon reflex assessment of the brachioradialis
+ OBI:0003540:
+ text: OBI:0003540
+ description: A mass spectrometry assay that uses two or more analyzers separated
+ by a region in which ions can be induced to fragment by transfer of energy
+ (frequently by collision with other molecules).
+ meaning: OBI:0003540
+ title: tandem mass spectrometry assay
+ OBI:0003541:
+ text: OBI:0003541
+ description: An enzyme-linked immunosorbent assay that detects the IgM antibody
+ that binds Orientia tsutsugamushi.
+ meaning: OBI:0003541
+ title: ELISA measuring Orientia tsutsugamushi IgM antibody
+ OBI:0003542:
+ text: OBI:0003542
+ description: A microarray assay that detects the IgM antibody that binds Dengue.
+ meaning: OBI:0003542
+ title: microarray assay measuring Dengue IgM antibody
+ OBI:0003543:
+ text: OBI:0003543
+ description: A microarray assay that detects NS1.
+ meaning: OBI:0003543
+ title: microarray assay measuring NS1
+ OBI:0003544:
+ text: OBI:0003544
+ description: Analytical chromatography that detects the IgM antibody that
+ binds Chikungunya.
+ meaning: OBI:0003544
+ title: analytical chromatography measuring Chikungunya IgM antibody
+ OBI:0003545:
+ text: OBI:0003545
+ description: An enzyme-linked immunosorbent assay that detects the IgM antibody
+ that binds Chikungunya.
+ meaning: OBI:0003545
+ title: ELISA measuring Chikungunya IgM antibody
+ OBI:0003546:
+ text: OBI:0003546
+ description: An enzyme-linked immunosorbent assay that uses a microarray as
+ the solid support and detects the IgM antibody that binds Chikungunya.
+ meaning: OBI:0003546
+ title: microarray ELISA measuring Chikungunya IgM antibody
+ OBI:0003552:
+ text: OBI:0003552
+ description: A chromosome conformation capture assay in which proximity ligation
+ is conducted in nuclei prior to chromatin shearing and immunoprecipitation.
+ Immunopreciptation with an antibody that targets a transcription factor
+ or histone modification allows for selection and enrichment of specific
+ genomic regions for investigation of long-range chromosomal interactions.
+ meaning: OBI:0003552
+ title: proximity ligation-assisted ChIP-seq
+ OBI:0003576:
+ text: OBI:0003576
+ description: An organism detection assay that detects microorganisms in a
+ skin of body specimen.
+ meaning: OBI:0003576
+ title: skin of body microbiology assay
+ OBI:0003578:
+ text: OBI:0003578
+ description: An organism detection assay that detects microorganisms in a
+ bone marrow specimen.
+ meaning: OBI:0003578
+ title: bone marrow microbiology assay
+ OBI:0003580:
+ text: OBI:0003580
+ description: An organism detection assay that detects microorganisms in a
+ nasal aspirate specimen.
+ meaning: OBI:0003580
+ title: nasal aspirate microbiology assay
+ OBI:0003582:
+ text: OBI:0003582
+ description: A cell proliferation assay that uses carboxyfluorescein succinimidyl
+ ester staining to detect cell division.
+ meaning: OBI:0003582
+ title: cell proliferation assay using carboxyfluorescein succinimidyl ester
+ staining
+ OBI:0003583:
+ text: OBI:0003583
+ description: A cytometry assay which measures the number of living cells in
+ a population.
+ meaning: OBI:0003583
+ title: cell viability assay
+ OBI:0003584:
+ text: OBI:0003584
+ description: A cell viability assay that uses Annexin V staining to detect
+ apoptotic cells.
+ meaning: OBI:0003584
+ title: cell viability assay using Annexin V staining
+ OBI:0003587:
+ text: OBI:0003587
+ description: An assay that has cell culture as an input.
+ meaning: OBI:0003587
+ title: cell culture assay
+ OBI:0003589:
+ text: OBI:0003589
+ description: An antigen specific antibodies assay that is meant to detect
+ antibodies that bind to Epstein-Barr virus (EBV) antigens in a serum sample.
+ meaning: OBI:0003589
+ title: serum anti-Epstein-Barr virus antibody level assay
+ OBI:0003590:
+ text: OBI:0003590
+ description: A CMV antibody assay that has serum as an input.
+ meaning: OBI:0003590
+ title: serum anti-cytomegalovirus antibody level assay
+ OBI:0003598:
+ text: OBI:0003598
+ description: A B cell receptor repertoire sequencing assay that determines
+ the sequence of DNA or RNA molecules that encode the repertoire of B cell
+ receptors that can be traced to a single cell of origin.
+ meaning: OBI:0003598
+ title: single cell B cell receptor repertoire sequencing assay
+ OBI:0003599:
+ text: OBI:0003599
+ description: A T cell receptor repertoire sequencing assay that determines
+ the sequence of DNA or RNA molecules that encode the repertoire of T cell
+ receptors that can be traced to a single cell of origin.
+ meaning: OBI:0003599
+ title: single cell T cell receptor repertoire sequencing assay
+ OBI:0003601:
+ text: OBI:0003601
+ description: An assay that measures the change in frequency of a quartz crystal
+ resonator resulting from the addition or removal of a small mass of a ligand
+ specifically binding at the surface of the resonator.
+ meaning: OBI:0003601
+ title: quartz crystal microbalance assay
+ OBI:0003602:
+ text: OBI:0003602
+ description: A quartz crystal microbalance assay that measures the dissociation
+ constant [KD] of an antigen binding with an antibody.
+ meaning: OBI:0003602
+ title: quartz crystal microbalance assay measuring the dissociation constant
+ [KD] of a B cell epitope:antibody complex
+ OBI:0003604:
+ text: OBI:0003604
+ description: A fluorescence in-situ hybridization assay that uses combinatorial
+ FISH labeling with error resistant encoding schemes for highly multiplexed
+ single-molecule imaging.
+ meaning: OBI:0003604
+ title: multiplexed error-robust fluorescence in situ hybridization assay
+ OBI:0003605:
+ text: OBI:0003605
+ description: A fluorescence in-situ hybridization assay that detects single
+ RNA molecules in fixed cells, allowing for both the quantification and localization
+ at the single-cell level and single-molecule resolution.
+ meaning: OBI:0003605
+ title: single molecule fluorescence in situ hybridization
+ OBI:0003612:
+ text: OBI:0003612
+ description: An electron-microscopy 3D molecular structure determination assay
+ that characterizes the 3-dimensional molecular structrue of a T cell epitope:MHC:TCR
+ complex.
+ meaning: OBI:0003612
+ title: electron microscopy assay determining the 3D structure of a T cell
+ epitope:MHC:TCR complex
+ OBI:0003613:
+ text: OBI:0003613
+ description: An electron-microscopy 3D molecular structure determination assay
+ that characterizes the 3-dimensional molecular structrue of a MHC:ligand
+ complex.
+ meaning: OBI:0003613
+ title: electron microscopy assay determining the 3D structure of a MHC:ligand
+ complex
+ OBI:0003659:
+ text: OBI:0003659
+ description: An assay in which cells expressing a Cas system are infected
+ with a library of guide RNAs with the intent of causing a perturbation at
+ the target of the guide RNAs.
+ meaning: OBI:0003659
+ title: in vitro CRISPR screen assay
+ OBI:0003660:
+ text: OBI:0003660
+ description: An in vitro CRISPR screen assay that uses single-cell RNA-Seq
+ to detect induced changes in gene expression.
+ meaning: OBI:0003660
+ title: in vitro CRISPR screen using single-cell RNA-seq
+ OBI:0003661:
+ text: OBI:0003661
+ description: An in vitro CRISPR screen assay that uses flow cytometry to detect
+ induced changes in gene expression of the targeted genes.
+ meaning: OBI:0003661
+ title: in vitro CRISPR screen using flow cytometry
+ OBI:0003662:
+ text: OBI:0003662
+ description: A DNA methylation profiling by high throughput sequencing assay
+ that measures the cytosine DNA methylation and gene expression signature
+ of single nuclei.
+ meaning: OBI:0003662
+ title: single-nucleus methylcytosine and transcriptome sequencing assay
+ OBI:0003686:
+ text: OBI:0003686
+ description: An assay that determines which regions of a DNA molecule are
+ in the form of euchromatin and thus able to make direct physical contact
+ with (i.e. are accessible to) other molecules such as RNA polymerase, transcription
+ factors, etc.
+ meaning: OBI:0003686
+ title: chromatin accessibility assay
+ OBI:0003687:
+ text: OBI:0003687
+ description: A DNA methylation profiling assay in which chromatin stencils
+ are created by treating nuclei with m6A methyltransferase (MTase) and then
+ sequenced using single-molecule circular consensus sequencing to identify
+ regions of accessible DNA at nucleotide resolution.
+ meaning: OBI:0003687
+ title: m6A-MTase sequencing assay
+ OBI:0003709:
+ text: OBI:0003709
+ description: A nervous system functionality assessment of learning or memory
+ in an organism
+ meaning: OBI:0003709
+ title: assessment of learning and/or memory response in an organism
+ OBI:0003710:
+ text: OBI:0003710
+ description: A nervous system functionality assessment of auditory startle
+ response in an organism in an anechoic chamber by exposing to sound.
+ meaning: OBI:0003710
+ title: assessment of startle response in an organism
+ OBI:0003711:
+ text: OBI:0003711
+ description: A nervous system functionality assessment that uses the grip
+ strength of a lab animal to measure neuromuscular function.
+ meaning: OBI:0003711
+ title: grip strength assay
+ OBI:0003712:
+ text: OBI:0003712
+ description: A physical examination to assess behavior quality in a live organism.
+ meaning: OBI:0003712
+ title: assay of organismal behavior
+ OBI:0003713:
+ text: OBI:0003713
+ description: A physical examination of an organism that provides information
+ about some developmental process in that organism.
+ meaning: OBI:0003713
+ title: organism development assay
+ OBI:0003714:
+ text: OBI:0003714
+ description: A physical examination of an organism that provides information
+ about some reproductive process in that organism.
+ meaning: OBI:0003714
+ title: reproductive assay
+ OBI:0003715:
+ text: OBI:0003715
+ description: An assay of a organism to measure basic physiological functions
+ such as breathing, pulse, etc. (phylum bilateral).
+ meaning: OBI:0003715
+ title: vital sign assay
+ OBI:0003716:
+ text: OBI:0003716
+ description: A vital sign assay that determines the blood pressure (force
+ of blood against the artery walls) of an organism.
+ meaning: OBI:0003716
+ title: blood pressure assay
+ OBI:0003717:
+ text: OBI:0003717
+ description: A pulse rate assay that measures beat to beat variability in
+ heart beats.
+ meaning: OBI:0003717
+ title: heart rate variability assay
+ OBI:0003718:
+ text: OBI:0003718
+ description: A vital sign assay that measures the heart beat rate of an organism.
+ meaning: OBI:0003718
+ title: pulse rate assay
+ OBI:0003719:
+ text: OBI:0003719
+ description: A vital sign assay that measures the quality of respiration /
+ respiratory system of an organism
+ meaning: OBI:0003719
+ title: respiratory assay
+ OBI:0003720:
+ text: OBI:0003720
+ description: A cytometry assay that monitors the differentiation stage of
+ cells in culture.
+ meaning: OBI:0003720
+ title: cell differentiation assay
+ OBI:0003721:
+ text: OBI:0003721
+ description: A cytometry assay that measures DNA damage in cells.
+ meaning: OBI:0003721
+ title: cell based DNA damage assay
+ OBI:0003722:
+ text: OBI:0003722
+ description: A cytometry assay to determine the number of natural killer cells
+ in a specimen
+ meaning: OBI:0003722
+ title: natural killer cell count assay
+ OBI:0003723:
+ text: OBI:0003723
+ description: A cytometry assay that measures the percentage of natural killer
+ cells in a specimen.
+ meaning: OBI:0003723
+ title: natural killer cell percentage assay
+ OBI:0003724:
+ text: OBI:0003724
+ description: A cytometry assay to count the number of mature sperm in a specimen.
+ meaning: OBI:0003724
+ title: sperm count assay
+ OBI:0003725:
+ text: OBI:0003725
+ description: An assay that obtains data from one or more participants by using
+ a survey or questionnaire
+ meaning: OBI:0003725
+ title: survey administration assay
+ OBI:0003734:
+ text: OBI:0003734
+ description: A clinical assay that produces a data item indicating whether
+ an organism has ever had a particular disease, lifestyle factor, immune
+ exposure, or medical procedure.
+ meaning: OBI:0003734
+ title: clinical history collection assay
+ OBI:0003735:
+ text: OBI:0003735
+ description: An assay that measures the severity of a disease in an organism.
+ meaning: OBI:0003735
+ title: disease severity assay
+ OBI:0003736:
+ text: OBI:0003736
+ description: An assay that produces information about a genetic characteristic
+ of an organism.
+ meaning: OBI:0003736
+ title: genetic characteristic assay
+ OBI:0003738:
+ text: OBI:0003738
+ description: An assay that classifies an organism's blood within one or more
+ blood group classification systems by identifying antigens present in the
+ blood.
+ meaning: OBI:0003738
+ title: blood type assay
+ OBI:0003741:
+ text: OBI:0003741
+ description: A mass spectrometry assay where a sample mixture is first separated
+ by capillary electrophoresis before being analysed by mass spectrometry.
+ meaning: OBI:0003741
+ title: capillary electrophoresis mass spectrometry assay
+ OBI:0003750:
+ text: OBI:0003750
+ description: A cell differentiation assay that detects neurite outgrowth and/or
+ branching
+ meaning: OBI:0003750
+ title: neurite outgrowth assay
+ OBI:0003751:
+ text: OBI:0003751
+ description: A cell differentiation assay that measures differentiation of
+ neurons.
+ meaning: OBI:0003751
+ title: neuronal differentiation assay
+ OBI:0003752:
+ text: OBI:0003752
+ description: A cell differentiation assay that measures differentiation of
+ oligodendrocytes.
+ meaning: OBI:0003752
+ title: oligodendrocyte differentiation assay
+ OBI:0003753:
+ text: OBI:0003753
+ description: A cell differentiation assay that measures synapse formation
+ and maturation using antibodies to protein found in synaptic puncta.
+ meaning: OBI:0003753
+ title: regulation of synapse maturation assay
+ OBI:0003754:
+ text: OBI:0003754
+ description: A cell based DNA damage assay that uses several constructed bacterial
+ strains to detect mutations.
+ meaning: OBI:0003754
+ title: Ames assay
+ OBI:0003755:
+ text: OBI:0003755
+ description: A cell based DNA damage assay in eukaryotic cells that detects
+ cytoplasmic micronuclei.
+ meaning: OBI:0003755
+ title: micronucleus assay
+ OBI:0003756:
+ text: OBI:0003756
+ description: A cell based DNA damage assay in eukaryotic cells that detects
+ loss of function through mutation of the X-linked (single-copy) Pig-a gene.
+ meaning: OBI:0003756
+ title: PIG-a assay
+ OBI:0003757:
+ text: OBI:0003757
+ description: A cell viability assay using the NAD(P)H-aided conversion of
+ resazurin to resorufin by metabolically active cells.
+ meaning: OBI:0003757
+ title: cell viability assay based on detection of resorufin
+ OBI:0003758:
+ text: OBI:0003758
+ description: A cell death assay that uses fluorescence imaging-based detection
+ of caspases involved in apoptosis
+ meaning: OBI:0003758
+ title: cell death assay using caspase abundance to detect apoptosis
+ OBI:0003759:
+ text: OBI:0003759
+ description: A cell viability assay which measures the number or proportion
+ of dead cells in a population.
+ meaning: OBI:0003759
+ title: cell death assay
+ OBI:0003760:
+ text: OBI:0003760
+ description: A cell viability assay based on detection of resorufin that uses
+ fluorescence to quantify resorufin
+ meaning: OBI:0003760
+ title: cell viability assay based on detection of resorufin using fluorescence
+ to qualtify the presence of resorufin.
+ OBI:0003761:
+ text: OBI:0003761
+ description: A cell death assay that measures the release of intracellular
+ LDH.
+ meaning: OBI:0003761
+ title: cell death assay detecting lactate dehydrogenase (LDH) release
+ OBI:0003762:
+ text: OBI:0003762
+ description: A cell death assay detecting lactate dehydrogenase (LDH) release
+ by absorbance of substrate
+ meaning: OBI:0003762
+ title: cell death assay detecting lactate dehydrogenase (LDH) release using
+ absorbance detection.
+ OBI:0003763:
+ text: OBI:0003763
+ description: A histological assay that measures the number of corpora lutea
+ (UBERON:0002512) in the ovary of an organism; corpora lutea develop from
+ the postovulatory follicle.
+ meaning: OBI:0003763
+ title: ovulation assessment in rodent assay
+ OBI:0003764:
+ text: OBI:0003764
+ description: An assay that performs a macroscopic assessment of a material
+ anatomical entity using the sense of sight.
+ meaning: OBI:0003764
+ title: macroscopic examination of material anatomical entity assay
+ OBI:0003765:
+ text: OBI:0003765
+ description: A macroscopic examination of material anatomical entity assay
+ performed on a post-mortem anatomical specimen.
+ meaning: OBI:0003765
+ title: pathological macroscopic examination of specimen assay
+ OBI:0003766:
+ text: OBI:0003766
+ description: A histological assay that evaluates cells in the vaginal endometrium
+ to assess the estrous cycle phase the subject was in at the time of specimen
+ collection.
+ meaning: OBI:0003766
+ title: estrous cycle assay based on tissue morphology
+ OBI:0003767:
+ text: OBI:0003767
+ description: An organism development assay performed with a late embryo stage
+ subject.
+ meaning: OBI:0003767
+ title: organism development assay in late embryo
+ OBI:0003768:
+ text: OBI:0003768
+ description: A histological assay that measures the number of implantation
+ sites in an organism.
+ meaning: OBI:0003768
+ title: pregnancy assessment based on tissue morphology assay
+ OBI:0003769:
+ text: OBI:0003769
+ description: A cell death assay that uses the Trypan blue vital dye to stain
+ cells which have lost membrane integrity.
+ meaning: OBI:0003769
+ title: cell death assay using vital dye
+ OBI:0003770:
+ text: OBI:0003770
+ description: A cytometry assay that uses a distance measurement assay to determine
+ the length of a neurite.
+ meaning: OBI:0003770
+ title: neurite length assay
+ OBI:0003771:
+ text: OBI:0003771
+ description: A cytometry assay that measures the degree of arborization, or
+ branching, in neuronal processes
+ meaning: OBI:0003771
+ title: neurite degree of arborization assay
+ OBI:0003772:
+ text: OBI:0003772
+ description: A cytometry assay that measures the number of neurites in a cultured
+ specimen.
+ meaning: OBI:0003772
+ title: neurite count assay
+ OBI:0003773:
+ text: OBI:0003773
+ description: A cytometry assay that measures the number of neurons in a sample
+ meaning: OBI:0003773
+ title: neuron count assay
+ OBI:0003774:
+ text: OBI:0003774
+ description: A regulation of synapse maturation assay that determines the
+ number of synaptic puncta in the cell body compartment of a neuron.
+ meaning: OBI:0003774
+ title: cell-body-associated presynaptic puncta count assay
+ OBI:0003775:
+ text: OBI:0003775
+ description: A regulation of synapse maturation assay that determines the
+ number of synaptic puncta in the dendritic compartment of a neuron.
+ meaning: OBI:0003775
+ title: dendrite-associated presynaptic puncta count assay
+ OBI:0003776:
+ text: OBI:0003776
+ description: A regulation of synapse maturation assay that determines the
+ number of synaptic puncta in a culture and normalizes it by the number of
+ neurons in the culture.
+ meaning: OBI:0003776
+ title: synapse per neuron assay
+ OBI:0003777:
+ text: OBI:0003777
+ description: An assay that measures the absorbance quality of the evaluant
+ meaning: OBI:0003777
+ title: absorbance quality detection assay
+ OBI:0003778:
+ text: OBI:0003778
+ description: The analyte assay that measures the abundance of a hormone in
+ a specimen.
+ meaning: OBI:0003778
+ title: hormone assay
+ OBI:0003779:
+ text: OBI:0003779
+ description: An analyte assay that detects a substance by measuring the release
+ of light triggered by a chemical reaction.
+ meaning: OBI:0003779
+ title: chemiluminescent assay
+ OBI:0003780:
+ text: OBI:0003780
+ description: A chemiluminescent assay that detects a substance by measuring
+ the release of light triggered by an electrochemical reaction.
+ meaning: OBI:0003780
+ title: electrochemiluminescence assay
+ OBI:0003781:
+ text: OBI:0003781
+ description: A mass spectrometry assay that identifies and measures proteins.
+ meaning: OBI:0003781
+ title: proteomics by mass spectrometry assay
+ OBI:0003782:
+ text: OBI:0003782
+ description: A mass spectrometry assay that identifies and measures metabolites.
+ meaning: OBI:0003782
+ title: metabolomics by mass spectrometry assay
+ OBI:0003788:
+ text: OBI:0003788
+ description: An assay performed on single cells that simultaneously measures
+ transcript expression via single-cell RNA sequencing and profiles surface
+ proteins via sequencing of DNA-barcodes attached to antibodies recognizing
+ particular surface proteins from individual cells.
+ meaning: OBI:0003788
+ title: cellular indexing of transcriptomes and epitopes by sequencing
+ OBI:0003789:
+ text: OBI:0003789
+ description: An assay that determines the sequence of a DNA or RNA molecules
+ that encode the repertoire of B cell receptors or T cell receptors within
+ an input sample.
+ meaning: OBI:0003789
+ title: immune receptor repertoire profiling assay
+ OBI:0003790:
+ text: OBI:0003790
+ description: An assay measuring antibody-dependent complement-dependent cytotoxicity.
+ meaning: OBI:0003790
+ title: antibody-dependent complement deposition assay
+ OBI:0003791:
+ text: OBI:0003791
+ description: An analyte assay measuring bacterial flagellin in a plasma sample.
+ meaning: OBI:0003791
+ title: bacterial flagellin detection in plasma assay
+ OBI:0003792:
+ text: OBI:0003792
+ description: An analyte assay measuring bacterial flagellin in a feces sample.
+ meaning: OBI:0003792
+ title: bacterial flagellin detection in feces assay
+ OBI:0003793:
+ text: OBI:0003793
+ description: An analyte assay measuring bacterial lipopolysaccharide in a
+ plasma sample.
+ meaning: OBI:0003793
+ title: bacterial lipopolysaccharide detection in plasma assay
+ OBI:0003794:
+ text: OBI:0003794
+ description: An analyte assay measuring bacterial lipopolysaccharide in a
+ feces sample.
+ meaning: OBI:0003794
+ title: bacterial lipopolysaccharide detection in feces assay
+ OBI:0003795:
+ text: OBI:0003795
+ description: An analyte assay measuring adenosine deaminase activity in a
+ sample.
+ meaning: OBI:0003795
+ title: adenosine deaminase activity assay
+ OBI:0003796:
+ text: OBI:0003796
+ description: An assay that measures neutralization of a pathogen.
+ meaning: OBI:0003796
+ title: pathogen neutralization assay
+ OBI:0003797:
+ text: OBI:0003797
+ description: A pathogen neutralization assay measuring neutralization of bacteria.
+ meaning: OBI:0003797
+ title: bacterial neutralization assay
+ OBI:0003798:
+ text: OBI:0003798
+ description: An analyte assay measuring the number of discrete viral plaques.
+ meaning: OBI:0003798
+ title: viral plaque assay
+ OBI:0003799:
+ text: OBI:0003799
+ description: An analyte assay that uses beads to measure the concentration
+ of an analyte with a flow cytometer.
+ meaning: OBI:0003799
+ title: analyte detection by flow based bead assay
+ OBI:0003801:
+ text: OBI:0003801
+ description: A histological assay with urine evaluant that measures opacity
+ of the urine
+ meaning: OBI:0003801
+ title: urine opacity assay
+ OBI:0003802:
+ text: OBI:0003802
+ description: A histological assay with urine evaluant that measures color.
+ meaning: OBI:0003802
+ title: urine color assay
+ OBI:0003803:
+ text: OBI:0003803
+ description: A histological assay with urine sediment as evaluant.
+ meaning: OBI:0003803
+ title: urine histological assay
+ OBI:0003804:
+ text: OBI:0003804
+ description: An assay that measures the color of the evaluant
+ meaning: OBI:0003804
+ title: color detection assay
+ OBI:0003805:
+ text: OBI:0003805
+ description: An assay that measures the opacity of the evaluant
+ meaning: OBI:0003805
+ title: opacity determination assay
+ OBI:0003811:
+ text: OBI:0003811
+ description: An estrous cycle assay based on tissue morphology that determines
+ the number of estrous cycles observed in a defined time.
+ meaning: OBI:0003811
+ title: estrous cycle count assay
+ OBI:0003812:
+ text: OBI:0003812
+ description: An estrous cycle assay based on tissue morphology that determines
+ the average length of a full estrous cycle observed in a defined time.
+ meaning: OBI:0003812
+ title: estrous cycle duration assay
+ OBI:0003813:
+ text: OBI:0003813
+ description: An organism development assay in late embryo that evaluates only
+ the external surface structure of the organism
+ meaning: OBI:0003813
+ title: organism development assay in late embryo based on examination of surface
+ structure
+ OBI:0003814:
+ text: OBI:0003814
+ description: An organism development assay in late embryo that evaluates the
+ skeletal system of the organism
+ meaning: OBI:0003814
+ title: organism development assay in late embryo based on examination of skeletal
+ system
+ OBI:0003815:
+ text: OBI:0003815
+ description: An organism development assay in late embryo that evaluates the
+ anatomical system of the organism
+ meaning: OBI:0003815
+ title: organism development assay in late embryo based on examination of anatomical
+ system
+ OBI:0003816:
+ text: OBI:0003816
+ description: An assay that measures the space between two entities.
+ meaning: OBI:0003816
+ title: distance measurement assay
+ OBI:0003817:
+ text: OBI:0003817
+ description: An assay that measures the distance between two points.
+ meaning: OBI:0003817
+ title: length measurement assay
+ OBI:0003818:
+ text: OBI:0003818
+ description: A length measurement assay that measures the length of a neonate
+ or fetus from crown of head to base of torso (rump)
+ meaning: OBI:0003818
+ title: crown rump length
+ OBI:0003819:
+ text: OBI:0003819
+ description: An assay that measures the distance traveled in a defined period
+ of time.
+ meaning: OBI:0003819
+ title: path length assay
+ OBI:0003820:
+ text: OBI:0003820
+ description: A distance measurement assay in which the migration of cells
+ in culture is monitored by measuring the distance between the start position
+ and the cell's location when observed.
+ meaning: OBI:0003820
+ title: cell migration assay
+ OBI:0003821:
+ text: OBI:0003821
+ description: A cell migration assay that measures migration of an oligodendrocyte
+ meaning: OBI:0003821
+ title: oligodendrocyte migration assay
+ OBI:0003822:
+ text: OBI:0003822
+ description: A cell migration assay that measures migration of a radial glia
+ cell
+ meaning: OBI:0003822
+ title: radial glial migration assay
+ OBI:0003823:
+ text: OBI:0003823
+ description: A cell migration assay that measures migration of a neuron
+ meaning: OBI:0003823
+ title: neuron migration assay
+ OBI:0003824:
+ text: OBI:0003824
+ description: A cell migration assay that measures migration of a neural crest
+ cell
+ meaning: OBI:0003824
+ title: neural crest cell migration assay
+ OBI:0003825:
+ text: OBI:0003825
+ description: An assay that measures the acidity of a specimen on the pH scale.
+ meaning: OBI:0003825
+ title: acidity quality assay
+ OBI:0003826:
+ text: OBI:0003826
+ description: An assay that measures the specific gravity of a sample.
+ meaning: OBI:0003826
+ title: specific gravity assay
+ OBI:0003827:
+ text: OBI:0003827
+ description: An assay to determine the speed of an evaluant.
+ meaning: OBI:0003827
+ title: speed measurement assay
+ OBI:0003828:
+ text: OBI:0003828
+ description: An assay to measure the velocity of an evaluant
+ meaning: OBI:0003828
+ title: velocity measurement assay
+ OBI:0003829:
+ text: OBI:0003829
+ description: An assay that measures the luminescence of the evaluant
+ meaning: OBI:0003829
+ title: luminescence detection assay
+ OBI:0003830:
+ text: OBI:0003830
+ description: A cell viability assay that uses an ATP bioluminescence assay
+ to detect ATP in the living cell
+ meaning: OBI:0003830
+ title: cell viability assay using luciferase to detect ATP in the cell
+ OBI:0003831:
+ text: OBI:0003831
+ description: An assay that measures the number of elements in a portion of
+ a population
+ meaning: OBI:0003831
+ title: population count assay
+ OBI:0003832:
+ text: OBI:0003832
+ description: A hematology assay that measures the fragility of red blood cells
+ by observing spillage of hemoglobin from burst cells.
+ meaning: OBI:0003832
+ title: hemolysis assay
+ OBI:0003833:
+ text: OBI:0003833
+ description: An electrophysiology assay that measures action potential events
+ in neurons during a time period.
+ meaning: OBI:0003833
+ title: neuron action potential rate assay
+ OBI:0003834:
+ text: OBI:0003834
+ description: An electrophysiology assay that measures the number of action
+ potential bursts in neurons during a time period.
+ meaning: OBI:0003834
+ title: neuron burst rate assay
+ OBI:0003835:
+ text: OBI:0003835
+ description: An electrophysiology assay that measures the elapsed time between
+ consecutive action potential bursts in neurons.
+ meaning: OBI:0003835
+ title: neuron interburst interval assay
+ OBI:0003836:
+ text: OBI:0003836
+ description: An electrophysiology assay that measures the time elapsed between
+ the first action potential in a neuron burst and the last in that burst.
+ meaning: OBI:0003836
+ title: neuron burst duration assay
+ OBI:0003837:
+ text: OBI:0003837
+ description: An electrophysiology assay that measures the time elapsed between
+ the peaks of consecutive action potential spikes in a neuron burst.
+ meaning: OBI:0003837
+ title: action potential interval assay
+ OBI:0003838:
+ text: OBI:0003838
+ description: An electrophysiology assay that measures the number of action
+ potential spikes occurring within a neuron burst
+ meaning: OBI:0003838
+ title: rate of action potentials in neuron burst assay
+ OBI:0003839:
+ text: OBI:0003839
+ description: A mass measurement assay with evaluant an individual organism.
+ meaning: OBI:0003839
+ title: body mass assay
+ OBI:0003840:
+ text: OBI:0003840
+ description: A body mass assay that measures the change in body mass for a
+ subject over a period of time.
+ meaning: OBI:0003840
+ title: body mass change assay
+ OBI:0003841:
+ text: OBI:0003841
+ description: A body weight assay with evaluant individual organism specimen
+ with quality dead.
+ meaning: OBI:0003841
+ title: body weight assay at death
+ OBI:0003842:
+ text: OBI:0003842
+ description: A mass measurement assay with evaluant tissue or bodily fluid
+ specimen.
+ meaning: OBI:0003842
+ title: tissue mass assay
+ OBI:0003843:
+ text: OBI:0003843
+ description: A mass measurement assay with evaluant tissue expressed as a
+ percentage of the body weight of the organism from which the specimen was
+ derived.
+ meaning: OBI:0003843
+ title: tissue mass percent of body mass assay
+ OBI:0003844:
+ text: OBI:0003844
+ description: An age determination assay which determines the age of the subject
+ at the time of the change from a state where it did not have a developmental
+ stage marker to one in which it does.
+ meaning: OBI:0003844
+ title: developmental marker age of attainment assessment
+ OBI:0003850:
+ text: OBI:0003850
+ description: A protein assay that measures the abundance of cytochrome P450
+ in a specimen.
+ meaning: OBI:0003850
+ title: cytochrome P450 assay
+ OBI:0003851:
+ text: OBI:0003851
+ description: An analyte assay to measure the abundance of one or more growth
+ factors in a volume of sample.
+ meaning: OBI:0003851
+ title: growth factor assay
+ OBI:0003852:
+ text: OBI:0003852
+ description: A fluorescence imaging-based cell morphology assay that uses
+ Hoechst dye 33342
+ meaning: OBI:0003852
+ title: Hoechst dye assay
+ OBI:0003853:
+ text: OBI:0003853
+ description: An immune response assay to assess the hypersensitivity response
+ in an organism or cell culture.
+ meaning: OBI:0003853
+ title: hypersensitivity assay
+ OBI:0003882:
+ text: OBI:0003882
+ description: A type of light microscopy assay where the images are taken with
+ a resolution higher than the diffraction limit.
+ meaning: OBI:0003882
+ title: super-resolution microscopy assay
+ OBI:0003885:
+ text: OBI:0003885
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using 1-methyl-7-nitroisatoic anhydride as reagent and
+ chemical probe
+ meaning: OBI:0003885
+ title: 1M7 RNA structure mapping assay
+ OBI:0003886:
+ text: OBI:0003886
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using 2-methylnicotinic acid imidazolide as reagent and
+ chemical probe
+ meaning: OBI:0003886
+ title: NAI RNA structure mapping assay
+ OBI:0003887:
+ text: OBI:0003887
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using 2-(azidomethyl)nicotinic acid imidazolide as reagent
+ and chemical probe
+ meaning: OBI:0003887
+ title: NAI-N3 RNA structure mapping assay
+ OBI:0003888:
+ text: OBI:0003888
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using 2-aminopyridine-3-carboxylic acid imidazolide as
+ reagent and chemical probe
+ meaning: OBI:0003888
+ title: 2A3 RNA structure mapping assay
+ OBI:0003889:
+ text: OBI:0003889
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using indoline-5-carboxylic acid imidazolide as reagent
+ and chemical probe
+ meaning: OBI:0003889
+ title: I5 RNA structure mapping assay
+ OBI:0003890:
+ text: OBI:0003890
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using 1-methylimidazole-4-carboxylic acid imidazolide as
+ reagent and chemical probe
+ meaning: OBI:0003890
+ title: 1M4 RNA structure mapping assay
+ OBI:0003891:
+ text: OBI:0003891
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using 6-aminopyridine-3-carboxylic acid imidazolide as
+ reagent and chemical probe
+ meaning: OBI:0003891
+ title: 6A3 RNA structure mapping assay
+ OBI:0003892:
+ text: OBI:0003892
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using benzotriazole-5-carboxylic acid imidazolide as reagent
+ and chemical probe
+ meaning: OBI:0003892
+ title: B5 RNA structure mapping assay
+ OBI:0003893:
+ text: OBI:0003893
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using nicotinic acid imidazolide as reagent and chemical
+ probe
+ meaning: OBI:0003893
+ title: NIC RNA structure mapping assay
+ OBI:0003894:
+ text: OBI:0003894
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using benzoyl cyanide as reagent and chemical probe
+ meaning: OBI:0003894
+ title: BzCN RNA structure mapping assay
+ OBI:0003895:
+ text: OBI:0003895
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using 1-methyl-6-nitroisatoic anhydride as reagent and
+ chemical probe
+ meaning: OBI:0003895
+ title: 1M6 RNA structure mapping assay
+ OBI:0003896:
+ text: OBI:0003896
+ description: A single-nucleotide-resolution ribonucleic acid structure mapping
+ assay that determines nucleic acid secondary structure at the nucleotide
+ resolution scale using 5-nitroisatoic anhydride as reagent and chemical
+ probe
+ meaning: OBI:0003896
+ title: 5NIA RNA structure mapping assay
+ OBI:0003897:
+ text: OBI:0003897
+ description: An assay that measures the number of cells in a portion of a
+ cell culture or tissue or bodily fluid
+ meaning: OBI:0003897
+ title: cell count assay
+ OBI:0003898:
+ text: OBI:0003898
+ description: A hematology assay that measures the percentage of classes of
+ leukocytes in a sample.
+ meaning: OBI:0003898
+ title: differential leukocyte count assay
+ OBI:0003899:
+ text: OBI:0003899
+ description: An electrophysiology assay that measures heart activity using
+ electrodes placed to detect electrical signals from the heart.
+ meaning: OBI:0003899
+ title: electrocardiogram assay
+ OBI:0003900:
+ text: OBI:0003900
+ description: An assay which uses an implanted telemeter to measure physiological
+ data in a living organism and transmit the measures via radio waves to a
+ recording device.
+ meaning: OBI:0003900
+ title: telemeter sensor detection assay
+ OBI:0003901:
+ text: OBI:0003901
+ description: A multi-unit recording assay using a multi-electrode array (MEA)
+ on the surface of a well on a cell culture plate.
+ meaning: OBI:0003901
+ title: multi-electrode array assay
+ OBI:0003902:
+ text: OBI:0003902
+ description: An extracellular electrophysiology recording assay to measure
+ the integrity of a cell monolayer
+ meaning: OBI:0003902
+ title: transepithelial / transendothelial electrical resistance (TEER) assay
+ OBI:0003903:
+ text: OBI:0003903
+ description: A multi-electrode array assay that measures the number of electrodes
+ in a well where the mean rate of action potentials is at least 5 spikes
+ per minute.
+ meaning: OBI:0003903
+ title: count of multi-electrode plate electrodes detecting action potential
+ assay
+ OBI:0003904:
+ text: OBI:0003904
+ description: A multi-electrode array assay that measures the number of electrodes
+ in a well where the burst rate is at least 0.5 bursts per minute.
+ meaning: OBI:0003904
+ title: count of multi-electrode plate electrodes detecting neuron burst assay
+ OBI:0003905:
+ text: OBI:0003905
+ description: An multi-electrode assay that measures the number of events when
+ multiple electrodes simultaneously detect an action potential during a time
+ period.
+ meaning: OBI:0003905
+ title: neural network spike rate assay
+ OBI:0003906:
+ text: OBI:0003906
+ description: A multi-electrode assay that measures the mean duration of events
+ when multiple electrodes detect an action potential
+ meaning: OBI:0003906
+ title: neural network spike duration assay
+ OBI:0003907:
+ text: OBI:0003907
+ description: A multi-electrode array assay that measures the average number
+ of electrodes detecting a network spike, measured at the peak of a network
+ spike.
+ meaning: OBI:0003907
+ title: count of multi-electrode plate electrodes detecting spike peak assay
+ OBI:0003908:
+ text: OBI:0003908
+ description: A multi-electrode assay that measures the average interval between
+ network spikes, events where multiple electrodes simultaneously detect an
+ action potential.
+ meaning: OBI:0003908
+ title: mean interspike interval in network spike
+ OBI:0003909:
+ text: OBI:0003909
+ description: An analyte assay that measures the abundance of bile acid in
+ a volume of sample.
+ meaning: OBI:0003909
+ title: bile acid concentration assay
+ OBI:0003910:
+ text: OBI:0003910
+ description: An analyte assay that measures the abundance of urea nitrogen.
+ meaning: OBI:0003910
+ title: urea nitrogen assay
+ OBI:0003911:
+ text: OBI:0003911
+ description: A urea nitrogen assay that measures the abundance of urea nitrogen
+ in a specimen
+ meaning: OBI:0003911
+ title: urea nitrogen concentration assay
+ OBI:0003912:
+ text: OBI:0003912
+ description: An in vitro CRISPR screen assay that uses single-cell ATAC-Seq
+ to detect induced changes in chromatin accessibility
+ meaning: OBI:0003912
+ title: in vitro CRISPR screen using single-cell ATAC-seq
+ OBI:0003913:
+ text: OBI:0003913
+ description: A single-cell transcription profiling by RNA sequencing assay
+ in which mRNA transcripts are metabolically labeled with 4-thiouridine to
+ investigate temporal RNA dynamics.
+ meaning: OBI:0003913
+ title: single-cell metabolically labeled new RNA tagging sequencing
+ OBI:0003914:
+ text: OBI:0003914
+ description: A massively parallel reporter assay in which libraries of reporter
+ constructs are transfected into samples and then measured via single cell
+ transcriptomic methods to enable discovery of cell-specific transcriptional
+ regulatory activity
+ meaning: OBI:0003914
+ title: single cell massively parallel reporter assay
+ OBI:0003915:
+ text: OBI:0003915
+ description: A single-cell transcription profiling by RNA sequencing assay
+ that involves single cell combinatorial indexing ('sci-') to profile the
+ transcriptomes of single cells or nuclei in an ultra high-throughput manor
+ via changes to the method, as compared to sci-RNA-seq, that include extraction
+ of nuclei directly from fresh tissue, use of hairpin ligation for the third
+ level of indexing, optimization of enxymatic reactions, and use of dilution
+ instead of FACS sorting.
+ meaning: OBI:0003915
+ title: ultra high throughput single-cell combinatorial indexing RNA sequencing
+ 3 assay
+ OBI:0302736:
+ text: OBI:0302736
+ description: A cell based DNA damage assay that measures DNA damage (DNA breakage)
+ in eucaryotic cells exposed to a challenge by determining the size and shape
+ of DNA migration by detecting fluorescently labeled DNA from a cell placed
+ in an electric field using gel electrophoresis
+ meaning: OBI:0302736
+ title: DNA damage comet assay
+ OBI:0302737:
+ text: OBI:0302737
+ description: An assay that identifies DNA sequence variation (mutation, deletion,
+ insertions) in target DNA sequences amplified using polymerase chain reaction
+ using gel electrophoresis and denaturating conditions
+ meaning: OBI:0302737
+ title: PCR-SSCP assay
+ OBI:0600002:
+ text: OBI:0600002
+ description: An assay that determines the grade (severity/stage) of a tumor
+ sample, used in cancer biology to describe abnormalities/qualities of tumor
+ cells or tissues. Values can be described by terms from NCI Thesaurus.
+ meaning: OBI:0600002
+ title: tumor grading
+ OBI:0600017:
+ text: OBI:0600017
+ description: An assay that detects the presence or a quality of a molecular
+ label which is a proxy for the detection of the molecular target to which
+ the label is attached
+ meaning: OBI:0600017
+ title: assay detecting a molecular label
+ OBI:0600020:
+ text: OBI:0600020
+ description: An assay that uses visual examination of cells or tissue (or
+ images of them) to make an assessment regarding a quality of the cells or
+ tissue. This assay can include steps of staining, imaging, and judgement.
+ meaning: OBI:0600020
+ title: histological assay
+ OBI:0600025:
+ text: OBI:0600025
+ description: An assay that detects a specified substance
+ meaning: OBI:0600025
+ title: substance detection assay
+ OBI:0600026:
+ text: OBI:0600026
+ description: An assay that measures the mass of a material at two or more
+ time points
+ meaning: OBI:0600026
+ title: longitudinal mass measurement assay
+ OBI:0600031:
+ text: OBI:0600031
+ description: A cytometry assay in which cells are cultured on a surface coated
+ with a capture antibody binding a secretory material of interest which subsequently
+ gets stained resulting in a spot for each cell producing the secretory material
+ of interest.
+ meaning: OBI:0600031
+ title: enzyme-linked immunospot assay
+ OBI:0600045:
+ text: OBI:0600045
+ description: An assay that determines the 3-dimensional configuration of an
+ input material.
+ meaning: OBI:0600045
+ title: 3D structure determination assay
+ OBI:0600047:
+ text: OBI:0600047
+ description: An assay the uses chemical or biochemical means to infer the
+ sequence of a biomaterial
+ meaning: OBI:0600047
+ title: sequencing assay
+ OBI:1110013:
+ text: OBI:1110013
+ description: An enzyme-linked immunospot assay that detects interleukin-2
+ production by T cells.
+ meaning: OBI:1110013
+ title: ELISPOT assay measuring epitope specific interleukin-2 production by
+ T cells
+ OBI:1110037:
+ text: OBI:1110037
+ description: A T cell epitope assay that measures the binding of T cell receptor
+ to an epitope.
+ meaning: OBI:1110037
+ title: assay measuring binding of a T cell epitope:MHC:TCR complex
+ OBI:1110059:
+ text: OBI:1110059
+ description: An enzyme-linked immunospot assay that detects interferon-gamma
+ production by T cells.
+ meaning: OBI:1110059
+ title: ELISPOT assay measuring epitope specific interferon-gamma production
+ by T cells
+ OBI:1110124:
+ text: OBI:1110124
+ description: An assay that detects the binding of a MHC:epitope complex with
+ a T cell receptor, and produces a qualitative measurement of the binding
+ as an output.
+ meaning: OBI:1110124
+ title: assay measuring qualitative binding of a T cell epitope:MHC:TCR complex
+ OBI:1110125:
+ text: OBI:1110125
+ description: A MHC ligand assay that determines what ligands are processed
+ and loaded onto MHC molecules by eluting ligands and identifying them.
+ meaning: OBI:1110125
+ title: assay measuring MHC ligand processing and presentation
+ OBI:1110126:
+ text: OBI:1110126
+ description: A MHC ligand assay that detects the binding of a ligand to an
+ MHC molecule.
+ meaning: OBI:1110126
+ title: assay measuring binding of a MHC:ligand complex
+ OBI:1110127:
+ text: OBI:1110127
+ description: A B cell epitope assay that measures the binding of an antibody
+ receptor to an epitope.
+ meaning: OBI:1110127
+ title: assay measuring binding of a B cell epitope:antibody complex
+ OBI:1110128:
+ text: OBI:1110128
+ description: An assay that detects the binding of an epitope to an adaptive
+ immune receptor, or an immune process resulting from such a binding event,
+ or characterizes the structrue of the complex resulting from such a binding
+ event.
+ meaning: OBI:1110128
+ title: immune epitope assay
+ OBI:1110129:
+ text: OBI:1110129
+ description: A T cell epitope assay that detects cytokine production by T
+ cells.
+ meaning: OBI:1110129
+ title: assay measuring epitope specific cytokine production by T cells
+ OBI:1110130:
+ text: OBI:1110130
+ description: A T cell epitope dependent biological activity assay that detects
+ the killing of an antigen presenting cell (APC) by a T cell whose TCR recognizes
+ an epitope presented by the APC.
+ meaning: OBI:1110130
+ title: assay measuring epitope specific T cell killing
+ OBI:1110131:
+ text: OBI:1110131
+ description: A T cell epitope dependent biological activity assay that detects
+ T cell proliferation.
+ meaning: OBI:1110131
+ title: assay measuring epitope specific proliferation of T cells
+ OBI:1110150:
+ text: OBI:1110150
+ description: A chromium release assay that detects the killing of an antigen
+ presenting cell (APC) by a T cell whose TCR recognizes an epitope presented
+ by the APC.
+ meaning: OBI:1110150
+ title: 51 chromium assay measuring epitope specific T cell killing
+ OBI:1110151:
+ text: OBI:1110151
+ description: An enzyme-linked immunosorbent assay that detects interferon-gamma
+ production by T cells.
+ meaning: OBI:1110151
+ title: ELISA measuring epitope specific interferon-gamma production by T cells
+ OBI:1110152:
+ text: OBI:1110152
+ description: An enzyme-linked immunosorbent assay that detects interleukin-2
+ production by T cells.
+ meaning: OBI:1110152
+ title: ELISA measuring epitope specific interleukin-2 production by T cells
+ OBI:1110153:
+ text: OBI:1110153
+ description: An enzyme-linked immunosorbent assay that detects interleukin-4
+ production by T cells.
+ meaning: OBI:1110153
+ title: ELISA measuring epitope specific interleukin-4 production by T cells
+ OBI:1110154:
+ text: OBI:1110154
+ description: An enzyme-linked immunosorbent assay that detects interleukin-5
+ production by T cells.
+ meaning: OBI:1110154
+ title: ELISA measuring epitope specific interleukin-5 production by T cells
+ OBI:1110155:
+ text: OBI:1110155
+ description: An enzyme-linked immunosorbent assay that detects tumor necrosis
+ factor alpha production by T cells.
+ meaning: OBI:1110155
+ title: ELISA measuring epitope specific tumor necrosis factor alpha production
+ by T cells
+ OBI:1110156:
+ text: OBI:1110156
+ description: An enzyme-linked immunosorbent assay that detects interleukin-10
+ production by T cells.
+ meaning: OBI:1110156
+ title: ELISA measuring epitope specific interleukin-10 production by T cells
+ OBI:1110157:
+ text: OBI:1110157
+ description: An enzyme-linked immunosorbent assay that detects granulocyte
+ macrophage colony stimulating factor production by T cells.
+ meaning: OBI:1110157
+ title: ELISA measuring epitope specific granulocyte macrophage colony-stimulating
+ factor production by T cells
+ OBI:1110158:
+ text: OBI:1110158
+ description: An enzyme-linked immunosorbent assay that detects interleukin-6
+ production by T cells.
+ meaning: OBI:1110158
+ title: ELISA measuring epitope specific interleukin-6 production by T cells
+ OBI:1110159:
+ text: OBI:1110159
+ description: An enzyme-linked immunosorbent assay that detects interleukin-13
+ production by T cells.
+ meaning: OBI:1110159
+ title: ELISA measuring epitope specific interleukin-13 production by T cells
+ OBI:1110160:
+ text: OBI:1110160
+ description: An enzyme-linked immunosorbent assay that detects interleukin-12
+ production by T cells.
+ meaning: OBI:1110160
+ title: ELISA measuring epitope specific interleukin-12 production by T cells
+ OBI:1110161:
+ text: OBI:1110161
+ description: An enzyme-linked immunosorbent assay that detects interleukin-1
+ beta production by T cells.
+ meaning: OBI:1110161
+ title: ELISA measuring epitope specific interleukin-1 beta production by T
+ cells
+ OBI:1110162:
+ text: OBI:1110162
+ description: An enzyme-linked immunosorbent assay that detects interleukin-17
+ production by T cells.
+ meaning: OBI:1110162
+ title: ELISA measuring epitope specific interleukin-17 production by T cells
+ OBI:1110163:
+ text: OBI:1110163
+ description: An enzyme-linked immunosorbent assay that detects interleukin-18
+ production by T cells.
+ meaning: OBI:1110163
+ title: ELISA measuring epitope specific interleukin-18 production by T cells
+ OBI:1110167:
+ text: OBI:1110167
+ description: An enzyme-linked immunospot assay that detects interleukin-4
+ production by T cells.
+ meaning: OBI:1110167
+ title: ELISPOT assay measuring epitope specific interleukin-4 production by
+ T cells
+ OBI:1110168:
+ text: OBI:1110168
+ description: An enzyme-linked immunospot assay that detects tumor necrosis
+ factor alpha production by T cells
+ meaning: OBI:1110168
+ title: ELISPOT assay measuring epitope specific tumor necrosis factor alpha
+ production by T cells
+ OBI:1110170:
+ text: OBI:1110170
+ description: An enzyme-linked immunospot assay that detects interleukin-10
+ production by T cells.
+ meaning: OBI:1110170
+ title: ELISPOT assay measuring epitope specific interleukin-10 production
+ by T cells
+ OBI:1110171:
+ text: OBI:1110171
+ description: An enzyme-linked immunospot assay that detects interleukin-13
+ production by T cells.
+ meaning: OBI:1110171
+ title: ELISPOT assay measuring epitope specific interleukin-13 production
+ by T cells
+ OBI:1110172:
+ text: OBI:1110172
+ description: A flow cytometry assay that detects interferon-gamma production
+ by T cells.
+ meaning: OBI:1110172
+ title: intracellular cytokine staining assay measuring epitope specific interferon-gamma
+ production by T cells
+ OBI:1110173:
+ text: OBI:1110173
+ description: A flow cytometry assay that detects interleukin-2 production
+ by T cells.
+ meaning: OBI:1110173
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-2
+ production by T cells
+ OBI:1110174:
+ text: OBI:1110174
+ description: A flow cytometry assay that detects tumor necrosis factor alpha
+ production by T cells.
+ meaning: OBI:1110174
+ title: intracellular cytokine staining assay measuring epitope specific tumor
+ necrosis factor alpha production by T cells
+ OBI:1110175:
+ text: OBI:1110175
+ description: A flow cytometry assay that detects interleukin-4 production
+ by T cells.
+ meaning: OBI:1110175
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-4
+ production by T cells
+ OBI:1110177:
+ text: OBI:1110177
+ description: A flow cytometry assay that detects interleukin-10 production
+ by T cells.
+ meaning: OBI:1110177
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-10
+ production by T cells
+ OBI:1110178:
+ text: OBI:1110178
+ description: A flow cytometry assay that detects interleukin-17 production
+ by T cells.
+ meaning: OBI:1110178
+ title: intracellular cytokine staining assay measuring epitope specific interleukin-17
+ production by T cells
+ OBI:1110179:
+ text: OBI:1110179
+ description: A MHC tetramer/multimer assay that measures the binding of an
+ epitope:MHC complex binding with a T cell receptor.
+ meaning: OBI:1110179
+ title: MHC tetramer/multimer assay measuring binding of a T cell epitope:MHC:TCR
+ complex
+ OBI:1110180:
+ text: OBI:1110180
+ description: A tritiated thymidine incorporation assay that detects T cell
+ epitope specific proliferation in vitro.
+ meaning: OBI:1110180
+ title: 3H-thymidine assay measuring epitope specific proliferation of T cells
+ OBI:1110181:
+ text: OBI:1110181
+ description: A BrdU incorporation assay that detects T cell epitope specific
+ proliferation in vitro.
+ meaning: OBI:1110181
+ title: BrdU assay measuring epitope specific proliferation of T cells
+ OBI:1110207:
+ text: OBI:1110207
+ description: An assay that determines information about the production of
+ the cytokine interferon gamma
+ meaning: OBI:1110207
+ title: assay detecting IFN-gamma production
+ OBI:2100001:
+ text: OBI:2100001
+ description: An analyte assay that measures the abundance of carbon dioxide
+ meaning: OBI:2100001
+ title: carbon dioxide assay
+ OBI:2100002:
+ text: OBI:2100002
+ description: An analyte assay that measures the abundance of sodium(1+)
+ meaning: OBI:2100002
+ title: sodium(1+) assay
+ OBI:2100003:
+ text: OBI:2100003
+ description: An analyte assay that measures the abundance of creatinine
+ meaning: OBI:2100003
+ title: creatinine assay
+ OBI:2100004:
+ text: OBI:2100004
+ description: An analyte assay that measures the abundance of potassium(1+)
+ meaning: OBI:2100004
+ title: potassium(1+) assay
+ OBI:2100005:
+ text: OBI:2100005
+ description: A cytometry assay that measures the count of basophils
+ meaning: OBI:2100005
+ title: basophil count assay
+ OBI:2100006:
+ text: OBI:2100006
+ description: A cytometry assay that measures the count of neutrophils
+ meaning: OBI:2100006
+ title: neutrophil count assay
+ OBI:2100007:
+ text: OBI:2100007
+ description: A cytometry assay that measures the count of eosinophils
+ meaning: OBI:2100007
+ title: eosinophil count assay
+ OBI:2100008:
+ text: OBI:2100008
+ description: A cytometry assay that measures the count of lymphocytes
+ meaning: OBI:2100008
+ title: lymphocyte count assay
+ OBI:2100009:
+ text: OBI:2100009
+ description: A cytometry assay that measures the count of monocytes
+ meaning: OBI:2100009
+ title: monocyte count assay
+ OBI:2100010:
+ text: OBI:2100010
+ description: An analyte assay that measures the abundance of chloride
+ meaning: OBI:2100010
+ title: chloride assay
+ OBI:2100011:
+ text: OBI:2100011
+ description: A cytometry assay that measures the count of erythrocytes
+ meaning: OBI:2100011
+ title: erythrocyte count assay
+ OBI:2100012:
+ text: OBI:2100012
+ description: A cytometry assay that measures the count of platelets
+ meaning: OBI:2100012
+ title: platelet count assay
+ OBI:2100013:
+ text: OBI:2100013
+ description: A cytometry assay that measures the count of leukocytes
+ meaning: OBI:2100013
+ title: leukocyte count assay
+ OBI:2100014:
+ text: OBI:2100014
+ description: An analyte assay that measures the abundance of hemoglobin
+ meaning: OBI:2100014
+ title: hemoglobin assay
+ OBI:2100015:
+ text: OBI:2100015
+ description: An analyte assay that measures the abundance of phosphate ion
+ meaning: OBI:2100015
+ title: phosphate ion assay
+ OBI:2100016:
+ text: OBI:2100016
+ description: An analyte assay that measures the abundance of alanine aminotransferase
+ meaning: OBI:2100016
+ title: alanine aminotransferase assay
+ OBI:2100017:
+ text: OBI:2100017
+ description: An analyte assay that measures the abundance of alkaline phosphatase
+ (human)
+ meaning: OBI:2100017
+ title: alkaline phosphatase (human) assay
+ OBI:2100018:
+ text: OBI:2100018
+ description: An analyte assay that measures the abundance of bilirubin IXalpha
+ meaning: OBI:2100018
+ title: bilirubin IXalpha assay
+ OBI:2100019:
+ text: OBI:2100019
+ description: An analyte assay that measures the abundance of aspartate aminotransferase
+ (human)
+ meaning: OBI:2100019
+ title: aspartate aminotransferase (human) assay
+ OBI:2100020:
+ text: OBI:2100020
+ description: An analyte assay that measures the abundance of glucose
+ meaning: OBI:2100020
+ title: glucose assay
+ OBI:2100021:
+ text: OBI:2100021
+ description: An analyte assay that measures the abundance of magnesium cation
+ meaning: OBI:2100021
+ title: magnesium cation assay
+ OBI:2100022:
+ text: OBI:2100022
+ description: An analyte assay that measures the abundance of albumin
+ meaning: OBI:2100022
+ title: albumin assay
+ OBI:2100023:
+ text: OBI:2100023
+ description: An analyte assay that measures the abundance of protein
+ meaning: OBI:2100023
+ title: protein assay
+ OBI:2100024:
+ text: OBI:2100024
+ description: An analyte assay that measures the abundance of calcium cation
+ meaning: OBI:2100024
+ title: calcium cation assay
+ OBI:2100025:
+ text: OBI:2100025
+ description: An analyte assay that measures the abundance of creatine kinase
+ meaning: OBI:2100025
+ title: creatine kinase assay
+ OBI:2100026:
+ text: OBI:2100026
+ description: A cytometry assay that measures the count of nucleate erythrocytes
+ meaning: OBI:2100026
+ title: nucleate erythrocyte count assay
+ OBI:2100027:
+ text: OBI:2100027
+ description: A cytometry assay that measures the count of segmented neutrophil
+ of bone marrows
+ meaning: OBI:2100027
+ title: segmented neutrophil of bone marrow count assay
+ OBI:2100028:
+ text: OBI:2100028
+ description: An assay that measures lactate dehydrogenase complex
+ meaning: OBI:2100028
+ title: lactate dehydrogenase complex assay
+ OBI:2100029:
+ text: OBI:2100029
+ description: An analyte assay that measures the abundance of triglyceride
+ meaning: OBI:2100029
+ title: triglyceride assay
+ OBI:2100030:
+ text: OBI:2100030
+ description: An analyte assay that measures the abundance of high-density
+ lipoprotein cholesterol
+ meaning: OBI:2100030
+ title: high-density lipoprotein cholesterol assay
+ OBI:2100031:
+ text: OBI:2100031
+ description: An analyte assay that measures the abundance of cholesterol
+ meaning: OBI:2100031
+ title: cholesterol assay
+ OBI:2100032:
+ text: OBI:2100032
+ description: An analyte assay that measures the abundance of low-density lipoprotein
+ cholesterol
+ meaning: OBI:2100032
+ title: low-density lipoprotein cholesterol assay
+ OBI:2100033:
+ text: OBI:2100033
+ description: An analyte assay that measures the abundance of thyroid stimulating
+ hormone
+ meaning: OBI:2100033
+ title: thyroid stimulating hormone assay
+ OBI:2100034:
+ text: OBI:2100034
+ description: An analyte assay that measures the abundance of prostate-specific
+ antigen
+ meaning: OBI:2100034
+ title: prostate-specific antigen assay
+ OBI:2100035:
+ text: OBI:2100035
+ description: An analyte assay that measures the abundance of thyroxine
+ meaning: OBI:2100035
+ title: thyroxine assay
+ OBI:2100036:
+ text: OBI:2100036
+ description: An analyte assay that measures the abundance of elemental oxygen
+ meaning: OBI:2100036
+ title: elemental oxygen assay
+ OBI:2100037:
+ text: OBI:2100037
+ description: An analyte assay that measures the abundance of folic acids
+ meaning: OBI:2100037
+ title: folic acids assay
+ OBI:2100038:
+ text: OBI:2100038
+ description: A cytometry assay that measures the count of reticulocytes
+ meaning: OBI:2100038
+ title: reticulocyte count assay
+ OBI:2100039:
+ text: OBI:2100039
+ description: An assay that measures osmolality
+ meaning: OBI:2100039
+ title: osmolality assay
+ OBI:2100040:
+ text: OBI:2100040
+ description: An analyte assay that measures the abundance of methemoglobin
+ meaning: OBI:2100040
+ title: methemoglobin assay
+ OBI:2100041:
+ text: OBI:2100041
+ description: An assay that measures cytosolic creatine kinase complex, MB-type
+ meaning: OBI:2100041
+ title: cytosolic creatine kinase complex, MB-type assay
+ OBI:2100042:
+ text: OBI:2100042
+ description: An assay that measures rac-lactic acid
+ meaning: OBI:2100042
+ title: rac-lactic acid assay
+ OBI:2100043:
+ text: OBI:2100043
+ description: An analyte assay that measures the abundance of hydrogencarbonate
+ meaning: OBI:2100043
+ title: hydrogencarbonate assay
+ OBI:2100044:
+ text: OBI:2100044
+ description: An analyte assay that measures the abundance of vancomycin
+ meaning: OBI:2100044
+ title: vancomycin assay
+ OBI:2100045:
+ text: OBI:2100045
+ description: An analyte assay that measures the abundance of tobramycin
+ meaning: OBI:2100045
+ title: tobramycin assay
+ OBI:2100046:
+ text: OBI:2100046
+ description: An analyte assay that measures the abundance of 3,3',5'-triiodothyronine
+ meaning: OBI:2100046
+ title: 3,3',5'-triiodothyronine assay
+ OBI:2100047:
+ text: OBI:2100047
+ description: An analyte assay that measures the abundance of C-reactive protein
+ meaning: OBI:2100047
+ title: C-reactive protein assay
+ OBI:2100048:
+ text: OBI:2100048
+ description: A cytometry assay that measures the count of megakaryocytes
+ meaning: OBI:2100048
+ title: megakaryocyte count assay
+ OBI:2100049:
+ text: OBI:2100049
+ description: A cytometry assay that measures the count of mesothelial cells
+ meaning: OBI:2100049
+ title: mesothelial cell count assay
+ OBI:2100050:
+ text: OBI:2100050
+ description: A cytometry assay that measures the count of macrophages
+ meaning: OBI:2100050
+ title: macrophage count assay
+ OBI:2100051:
+ text: OBI:2100051
+ description: An analyte assay that measures the abundance of 3-hydroxybutyric
+ acid
+ meaning: OBI:2100051
+ title: 3-hydroxybutyric acid assay
+ OBI:2100052:
+ text: OBI:2100052
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in venous blood as part of a panel5 order
+ meaning: OBI:2100052
+ title: panel5 venous blood carbon dioxide assay
+ OBI:2100053:
+ text: OBI:2100053
+ description: An analyte assay that measures the abundance of sodium in venous
+ blood as part of a panel5 order
+ meaning: OBI:2100053
+ title: panel5 venous blood sodium assay
+ OBI:2100054:
+ text: OBI:2100054
+ description: An analyte assay that measures the abundance of creatinine in
+ venous blood as part of a panel5 order
+ meaning: OBI:2100054
+ title: panel5 venous blood creatinine assay
+ OBI:2100055:
+ text: OBI:2100055
+ description: An analyte assay that measures the abundance of potassium in
+ venous blood as part of a panel5 order
+ meaning: OBI:2100055
+ title: panel5 venous blood potassium assay
+ OBI:2100056:
+ text: OBI:2100056
+ description: A cytometry assay that measures the count of basophils in venous
+ blood as part of a automated differential order
+ meaning: OBI:2100056
+ title: automated differential venous blood basophil count assay
+ OBI:2100057:
+ text: OBI:2100057
+ description: A cytometry assay that measures the count of neutrophils in venous
+ blood as part of a automated differential order
+ meaning: OBI:2100057
+ title: automated differential venous blood neutrophil count assay
+ OBI:2100058:
+ text: OBI:2100058
+ description: A cytometry assay that measures the count of eosinophils in venous
+ blood as part of a automated differential order
+ meaning: OBI:2100058
+ title: automated differential venous blood eosinophil count assay
+ OBI:2100059:
+ text: OBI:2100059
+ description: A cytometry assay that measures the count of lymphocytes in venous
+ blood as part of a automated differential order
+ meaning: OBI:2100059
+ title: automated differential venous blood lymphocyte count assay
+ OBI:2100060:
+ text: OBI:2100060
+ description: A cytometry assay that measures the count of monocytes in venous
+ blood as part of a automated differential order
+ meaning: OBI:2100060
+ title: automated differential venous blood monocyte count assay
+ OBI:2100061:
+ text: OBI:2100061
+ description: An analyte assay that measures the abundance of chloride in venous
+ blood
+ meaning: OBI:2100061
+ title: venous blood chloride assay
+ OBI:2100062:
+ text: OBI:2100062
+ description: A cytometry assay that measures the count of RBCs in venous blood
+ as part of a CBC with automated differential order
+ meaning: OBI:2100062
+ title: CBC with automated differential venous blood RBC count assay
+ OBI:2100063:
+ text: OBI:2100063
+ description: A cytometry assay that measures the count of platelets in venous
+ blood as part of a CBC with automated differential order
+ meaning: OBI:2100063
+ title: CBC with automated differential venous blood platelet count assay
+ OBI:2100064:
+ text: OBI:2100064
+ description: A cytometry assay that measures the count of WBCs in venous blood
+ as part of a CBC with automated differential order
+ meaning: OBI:2100064
+ title: CBC with automated differential venous blood WBC count assay
+ OBI:2100065:
+ text: OBI:2100065
+ description: A cytometry assay that measures the proportion of red blood cells
+ in venous blood as part of a CBC with automated differential order
+ meaning: OBI:2100065
+ title: CBC with automated differential venous blood hematocrit assay
+ OBI:2100066:
+ text: OBI:2100066
+ description: An analyte assay that measures the abundance of hemoglobin in
+ venous blood as part of a CBC with automated differential order
+ meaning: OBI:2100066
+ title: CBC with automated differential venous blood hemoglobin assay
+ OBI:2100067:
+ text: OBI:2100067
+ description: An analyte assay that measures the abundance of phosphate in
+ venous blood
+ meaning: OBI:2100067
+ title: venous blood phosphate assay
+ OBI:2100068:
+ text: OBI:2100068
+ description: An analyte assay that measures the abundance of alanine aminotransferase
+ in venous blood as part of a liver injury order
+ meaning: OBI:2100068
+ title: liver injury venous blood alanine aminotransferase assay
+ OBI:2100069:
+ text: OBI:2100069
+ description: An analyte assay that measures the abundance of human alkaline
+ phosphatase in venous blood as part of a liver injury order
+ meaning: OBI:2100069
+ title: liver injury venous blood human alkaline phosphatase assay
+ OBI:2100070:
+ text: OBI:2100070
+ description: An analyte assay that measures the abundance of bilirubin in
+ venous blood as part of a liver injury order
+ meaning: OBI:2100070
+ title: liver injury venous blood bilirubin assay
+ OBI:2100071:
+ text: OBI:2100071
+ description: An analyte assay that measures the abundance of human aspartate
+ aminotransferase in venous blood as part of a liver injury order
+ meaning: OBI:2100071
+ title: liver injury venous blood human aspartate aminotransferase assay
+ OBI:2100072:
+ text: OBI:2100072
+ description: An analyte assay that measures the abundance of glucose in venous
+ blood
+ meaning: OBI:2100072
+ title: venous blood glucose assay
+ OBI:2100073:
+ text: OBI:2100073
+ description: An analyte assay that measures the abundance of magnesium in
+ venous blood
+ meaning: OBI:2100073
+ title: venous blood magnesium assay
+ OBI:2100074:
+ text: OBI:2100074
+ description: A cytometry assay that measures the count of RBCs in venous blood
+ as part of a CBC order
+ meaning: OBI:2100074
+ title: CBC venous blood RBC count assay
+ OBI:2100075:
+ text: OBI:2100075
+ description: A cytometry assay that measures the count of WBCs in venous blood
+ as part of a CBC order
+ meaning: OBI:2100075
+ title: CBC venous blood WBC count assay
+ OBI:2100076:
+ text: OBI:2100076
+ description: A cytometry assay that measures the proportion of red blood cells
+ in venous blood as part of a CBC order
+ meaning: OBI:2100076
+ title: CBC venous blood hematocrit assay
+ OBI:2100077:
+ text: OBI:2100077
+ description: A cytometry assay that measures the count of platelets in venous
+ blood as part of a CBC order
+ meaning: OBI:2100077
+ title: CBC venous blood platelet count assay
+ OBI:2100078:
+ text: OBI:2100078
+ description: An analyte assay that measures the abundance of hemoglobin in
+ venous blood as part of a CBC order
+ meaning: OBI:2100078
+ title: CBC venous blood hemoglobin assay
+ OBI:2100079:
+ text: OBI:2100079
+ description: A cytometry assay that measures the count of leukocytes in venous
+ blood as part of a corrected order
+ meaning: OBI:2100079
+ title: corrected venous blood leukocyte count assay
+ OBI:2100080:
+ text: OBI:2100080
+ description: An analyte assay that measures the abundance of bilirubin in
+ venous blood as part of a liver evaluation order
+ meaning: OBI:2100080
+ title: liver evaluation venous blood bilirubin assay
+ OBI:2100081:
+ text: OBI:2100081
+ description: An analyte assay that measures the abundance of globulin in venous
+ blood as part of a liver evaluation order
+ meaning: OBI:2100081
+ title: liver evaluation venous blood globulin assay
+ OBI:2100082:
+ text: OBI:2100082
+ description: An analyte assay that measures the abundance of albumin in venous
+ blood as part of a liver evaluation order
+ meaning: OBI:2100082
+ title: liver evaluation venous blood albumin assay
+ OBI:2100083:
+ text: OBI:2100083
+ description: An analyte assay that measures the abundance of human aspartate
+ aminotransferase in venous blood as part of a liver evaluation order
+ meaning: OBI:2100083
+ title: liver evaluation venous blood human aspartate aminotransferase assay
+ OBI:2100084:
+ text: OBI:2100084
+ description: An analyte assay that measures the abundance of alanine aminotransferase
+ in venous blood as part of a liver evaluation order
+ meaning: OBI:2100084
+ title: liver evaluation venous blood alanine aminotransferase assay
+ OBI:2100085:
+ text: OBI:2100085
+ description: An analyte assay that measures the abundance of human alkaline
+ phosphatase in venous blood as part of a liver evaluation order
+ meaning: OBI:2100085
+ title: liver evaluation venous blood human alkaline phosphatase assay
+ OBI:2100086:
+ text: OBI:2100086
+ description: An analyte assay that measures the abundance of protein in venous
+ blood as part of a liver evaluation order
+ meaning: OBI:2100086
+ title: liver evaluation venous blood protein assay
+ OBI:2100087:
+ text: OBI:2100087
+ description: An analyte assay that measures the abundance of chloride in venous
+ blood as part of a basic metabolic panel order
+ meaning: OBI:2100087
+ title: basic metabolic panel venous blood chloride assay
+ OBI:2100088:
+ text: OBI:2100088
+ description: An analyte assay that measures the abundance of potassium in
+ venous blood as part of a basic metabolic panel order
+ meaning: OBI:2100088
+ title: basic metabolic panel venous blood potassium assay
+ OBI:2100089:
+ text: OBI:2100089
+ description: An analyte assay that measures the abundance of sodium in venous
+ blood as part of a basic metabolic panel order
+ meaning: OBI:2100089
+ title: basic metabolic panel venous blood sodium assay
+ OBI:2100090:
+ text: OBI:2100090
+ description: An analyte assay that measures the abundance of creatinine in
+ venous blood as part of a basic metabolic panel order
+ meaning: OBI:2100090
+ title: basic metabolic panel venous blood creatinine assay
+ OBI:2100091:
+ text: OBI:2100091
+ description: An analyte assay that measures the abundance of glucose in venous
+ blood as part of a basic metabolic panel order
+ meaning: OBI:2100091
+ title: basic metabolic panel venous blood glucose assay
+ OBI:2100092:
+ text: OBI:2100092
+ description: An analyte assay that measures the abundance of calcium in venous
+ blood as part of a basic metabolic panel order
+ meaning: OBI:2100092
+ title: basic metabolic panel venous blood calcium assay
+ OBI:2100093:
+ text: OBI:2100093
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in venous blood as part of a basic metabolic panel order
+ meaning: OBI:2100093
+ title: basic metabolic panel venous blood carbon dioxide assay
+ OBI:2100094:
+ text: OBI:2100094
+ description: An analyte assay that measures the abundance of creatine kinase
+ in venous blood
+ meaning: OBI:2100094
+ title: venous blood creatine kinase assay
+ OBI:2100095:
+ text: OBI:2100095
+ description: An analyte assay that measures the abundance of calcium in venous
+ blood
+ meaning: OBI:2100095
+ title: venous blood calcium assay
+ OBI:2100096:
+ text: OBI:2100096
+ description: An assay that measures ferritin in venous blood
+ meaning: OBI:2100096
+ title: venous blood ferritin assay
+ OBI:2100097:
+ text: OBI:2100097
+ description: An analyte assay that measures the abundance of calcium in venous
+ blood as part of a total order
+ meaning: OBI:2100097
+ title: total venous blood calcium assay
+ OBI:2100098:
+ text: OBI:2100098
+ description: An analyte assay that measures the abundance of iron in venous
+ blood
+ meaning: OBI:2100098
+ title: venous blood iron assay
+ OBI:2100099:
+ text: OBI:2100099
+ description: A cytometry assay that measures the count of band neutrophils
+ in venous blood as part of a CBC with manual differential order
+ meaning: OBI:2100099
+ title: CBC with manual differential venous blood band neutrophil count assay
+ OBI:2100100:
+ text: OBI:2100100
+ description: A cytometry assay that measures the count of WBCs in venous blood
+ as part of a CBC with manual differential order
+ meaning: OBI:2100100
+ title: CBC with manual differential venous blood WBC count assay
+ OBI:2100101:
+ text: OBI:2100101
+ description: A cytometry assay that measures the count of eosinophils in venous
+ blood as part of a CBC with manual differential order
+ meaning: OBI:2100101
+ title: CBC with manual differential venous blood eosinophil count assay
+ OBI:2100102:
+ text: OBI:2100102
+ description: A cytometry assay that measures the count of lymphocytes in venous
+ blood as part of a CBC with manual differential order
+ meaning: OBI:2100102
+ title: CBC with manual differential venous blood lymphocyte count assay
+ OBI:2100103:
+ text: OBI:2100103
+ description: A cytometry assay that measures the count of nucleated RBCs in
+ venous blood as part of a CBC with manual differential order
+ meaning: OBI:2100103
+ title: CBC with manual differential venous blood nucleated RBC count assay
+ OBI:2100104:
+ text: OBI:2100104
+ description: A cytometry assay that measures the count of monocytes in venous
+ blood as part of a CBC with manual differential order
+ meaning: OBI:2100104
+ title: CBC with manual differential venous blood monocyte count assay
+ OBI:2100105:
+ text: OBI:2100105
+ description: A cytometry assay that measures the count of segmented neutrophils
+ in venous blood as part of a CBC with manual differential order
+ meaning: OBI:2100105
+ title: CBC with manual differential venous blood segmented neutrophil count
+ assay
+ OBI:2100106:
+ text: OBI:2100106
+ description: A cytometry assay that measures the count of basophils in venous
+ blood as part of a CBC with manual differential order
+ meaning: OBI:2100106
+ title: CBC with manual differential venous blood basophil count assay
+ OBI:2100107:
+ text: OBI:2100107
+ description: An analyte assay that measures the abundance of albumin in venous
+ blood
+ meaning: OBI:2100107
+ title: venous blood albumin assay
+ OBI:2100108:
+ text: OBI:2100108
+ description: An analyte assay that measures the abundance of creatine kinase
+ in venous blood as part of a cardiac enzymes order
+ meaning: OBI:2100108
+ title: cardiac enzymes venous blood creatine kinase assay
+ OBI:2100109:
+ text: OBI:2100109
+ description: An analyte assay that measures the abundance of haptoglobin in
+ venous blood
+ meaning: OBI:2100109
+ title: venous blood haptoglobin assay
+ OBI:2100110:
+ text: OBI:2100110
+ description: An assay that measures lactate dehydrogenase in venous blood
+ meaning: OBI:2100110
+ title: venous blood lactate dehydrogenase assay
+ OBI:2100111:
+ text: OBI:2100111
+ description: An analyte assay that measures the abundance of prealbunin in
+ venous blood
+ meaning: OBI:2100111
+ title: venous blood prealbunin assay
+ OBI:2100112:
+ text: OBI:2100112
+ description: An analyte assay that measures the abundance of triglyceride
+ in venous blood as part of a lipid panel order
+ meaning: OBI:2100112
+ title: lipid panel venous blood triglyceride assay
+ OBI:2100113:
+ text: OBI:2100113
+ description: An analyte assay that measures the abundance of high density
+ lipoprotein in venous blood as part of a lipid panel order
+ meaning: OBI:2100113
+ title: lipid panel venous blood high density lipoprotein assay
+ OBI:2100114:
+ text: OBI:2100114
+ description: An analyte assay that measures the abundance of cholesterol in
+ venous blood as part of a lipid panel order
+ meaning: OBI:2100114
+ title: lipid panel venous blood cholesterol assay
+ OBI:2100115:
+ text: OBI:2100115
+ description: An analyte assay that measures the abundance of low density lipoprotein
+ in venous blood as part of a lipid panel order
+ meaning: OBI:2100115
+ title: lipid panel venous blood low density lipoprotein assay
+ OBI:2100116:
+ text: OBI:2100116
+ description: An assay that measures hemoglobin A1c in venous blood
+ meaning: OBI:2100116
+ title: venous blood hemoglobin A1c assay
+ OBI:2100117:
+ text: OBI:2100117
+ description: An analyte assay that measures the abundance of uric acid in
+ venous blood
+ meaning: OBI:2100117
+ title: venous blood uric acid assay
+ OBI:2100118:
+ text: OBI:2100118
+ description: An analyte assay that measures the abundance of protein in venous
+ blood as part of a total order
+ meaning: OBI:2100118
+ title: total venous blood protein assay
+ OBI:2100119:
+ text: OBI:2100119
+ description: An analyte assay that measures the abundance of thyroid stimulating
+ hormone in venous blood
+ meaning: OBI:2100119
+ title: venous blood thyroid stimulating hormone assay
+ OBI:2100120:
+ text: OBI:2100120
+ description: An analyte assay that measures the abundance of prostate specific
+ antigen in venous blood
+ meaning: OBI:2100120
+ title: venous blood prostate specific antigen assay
+ OBI:2100121:
+ text: OBI:2100121
+ description: An assay that measures volume in urine as part of a 24 hour total
+ order
+ meaning: OBI:2100121
+ title: 24 hour total urine volume assay
+ OBI:2100122:
+ text: OBI:2100122
+ description: An analyte assay that measures the abundance of T4 in venous
+ blood as part of a T4 uptake order
+ meaning: OBI:2100122
+ title: T4 uptake venous blood T4 assay
+ OBI:2100123:
+ text: OBI:2100123
+ description: An analyte assay that measures the abundance of glucose in arterial
+ blood
+ meaning: OBI:2100123
+ title: arterial blood glucose assay
+ OBI:2100124:
+ text: OBI:2100124
+ description: A cytometry assay that measures the count of cells in venous
+ blood as part of a CBC with manual differential order
+ meaning: OBI:2100124
+ title: CBC with manual differential venous blood cell count assay
+ OBI:2100125:
+ text: OBI:2100125
+ description: An analyte assay that measures the abundance of oxygen in arterial
+ blood as part of a hemoglobin oxygen saturation order
+ meaning: OBI:2100125
+ title: hemoglobin oxygen saturation arterial blood oxygen assay
+ OBI:2100126:
+ text: OBI:2100126
+ description: An analyte assay that measures the abundance of hemoglobin in
+ arterial blood as part of a hemoglobin oxygen saturation order
+ meaning: OBI:2100126
+ title: hemoglobin oxygen saturation arterial blood hemoglobin assay
+ OBI:2100127:
+ text: OBI:2100127
+ description: An analyte assay that measures the abundance of sodium in venous
+ blood as part of a inpatient profile order
+ meaning: OBI:2100127
+ title: inpatient profile venous blood sodium assay
+ OBI:2100128:
+ text: OBI:2100128
+ description: An analyte assay that measures the abundance of creatinine in
+ venous blood as part of a inpatient profile order
+ meaning: OBI:2100128
+ title: inpatient profile venous blood creatinine assay
+ OBI:2100129:
+ text: OBI:2100129
+ description: An analyte assay that measures the abundance of potassium in
+ venous blood as part of a inpatient profile order
+ meaning: OBI:2100129
+ title: inpatient profile venous blood potassium assay
+ OBI:2100130:
+ text: OBI:2100130
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in venous blood as part of a inpatient profile order
+ meaning: OBI:2100130
+ title: inpatient profile venous blood carbon dioxide assay
+ OBI:2100131:
+ text: OBI:2100131
+ description: An analyte assay that measures the abundance of folic acid in
+ venous blood
+ meaning: OBI:2100131
+ title: venous blood folic acid assay
+ OBI:2100132:
+ text: OBI:2100132
+ description: A cytometry assay that measures the count of reticulocytes in
+ venous blood as part of a count order
+ meaning: OBI:2100132
+ title: count venous blood reticulocyte count assay
+ OBI:2100133:
+ text: OBI:2100133
+ description: An analyte assay that measures the abundance of potassium in
+ venous blood
+ meaning: OBI:2100133
+ title: venous blood potassium assay
+ OBI:2100134:
+ text: OBI:2100134
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in venous blood
+ meaning: OBI:2100134
+ title: venous blood carbon dioxide assay
+ OBI:2100135:
+ text: OBI:2100135
+ description: An analyte assay that measures the abundance of transferrin in
+ venous blood
+ meaning: OBI:2100135
+ title: venous blood transferrin assay
+ OBI:2100136:
+ text: OBI:2100136
+ description: An analyte assay that measures the abundance of sodium in venous
+ blood
+ meaning: OBI:2100136
+ title: venous blood sodium assay
+ OBI:2100137:
+ text: OBI:2100137
+ description: An analyte assay that measures the abundance of sodium in urine
+ as part of a random electrolytes order
+ meaning: OBI:2100137
+ title: random electrolytes urine sodium assay
+ OBI:2100138:
+ text: OBI:2100138
+ description: An analyte assay that measures the abundance of potassium in
+ urine as part of a random electrolytes order
+ meaning: OBI:2100138
+ title: random electrolytes urine potassium assay
+ OBI:2100139:
+ text: OBI:2100139
+ description: An analyte assay that measures the abundance of creatinine in
+ urine
+ meaning: OBI:2100139
+ title: urine creatinine assay
+ OBI:2100140:
+ text: OBI:2100140
+ description: An assay that measures osmolality in urine
+ meaning: OBI:2100140
+ title: urine osmolality assay
+ OBI:2100141:
+ text: OBI:2100141
+ description: An analyte assay that measures the abundance of oxygen in arterial
+ blood as part of a cooximitery order
+ meaning: OBI:2100141
+ title: cooximitery arterial blood oxygen assay
+ OBI:2100142:
+ text: OBI:2100142
+ description: An analyte assay that measures the abundance of hemoglobin in
+ arterial blood as part of a cooximitery order
+ meaning: OBI:2100142
+ title: cooximitery arterial blood hemoglobin assay
+ OBI:2100143:
+ text: OBI:2100143
+ description: An analyte assay that measures the abundance of methemoglobin
+ in arterial blood as part of a cooximitery order
+ meaning: OBI:2100143
+ title: cooximitery arterial blood methemoglobin assay
+ OBI:2100144:
+ text: OBI:2100144
+ description: An analyte assay that measures the abundance of sodium in urine
+ as part of a electrolytes order
+ meaning: OBI:2100144
+ title: electrolytes urine sodium assay
+ OBI:2100145:
+ text: OBI:2100145
+ description: An analyte assay that measures the abundance of potassium in
+ urine as part of a electrolytes order
+ meaning: OBI:2100145
+ title: electrolytes urine potassium assay
+ OBI:2100146:
+ text: OBI:2100146
+ description: An assay that measures creatine kinase MB in arterial blood as
+ part of a Biosite cardiac panel order
+ meaning: OBI:2100146
+ title: Biosite cardiac panel arterial blood creatine kinase MB assay
+ OBI:2100147:
+ text: OBI:2100147
+ description: An assay that measures fibrinogen in venous blood
+ meaning: OBI:2100147
+ title: venous blood fibrinogen assay
+ OBI:2100148:
+ text: OBI:2100148
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in venous blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100148
+ title: comprehensive metabolic panel venous blood carbon dioxide assay
+ OBI:2100149:
+ text: OBI:2100149
+ description: An analyte assay that measures the abundance of calcium in venous
+ blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100149
+ title: comprehensive metabolic panel venous blood calcium assay
+ OBI:2100150:
+ text: OBI:2100150
+ description: An analyte assay that measures the abundance of potassium in
+ venous blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100150
+ title: comprehensive metabolic panel venous blood potassium assay
+ OBI:2100151:
+ text: OBI:2100151
+ description: An analyte assay that measures the abundance of sodium in venous
+ blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100151
+ title: comprehensive metabolic panel venous blood sodium assay
+ OBI:2100152:
+ text: OBI:2100152
+ description: An analyte assay that measures the abundance of glucose in venous
+ blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100152
+ title: comprehensive metabolic panel venous blood glucose assay
+ OBI:2100153:
+ text: OBI:2100153
+ description: An analyte assay that measures the abundance of albumin in venous
+ blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100153
+ title: comprehensive metabolic panel venous blood albumin assay
+ OBI:2100154:
+ text: OBI:2100154
+ description: An analyte assay that measures the abundance of human alkaline
+ phosphatase in venous blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100154
+ title: comprehensive metabolic panel venous blood human alkaline phosphatase
+ assay
+ OBI:2100155:
+ text: OBI:2100155
+ description: An analyte assay that measures the abundance of bilirubin in
+ venous blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100155
+ title: comprehensive metabolic panel venous blood bilirubin assay
+ OBI:2100156:
+ text: OBI:2100156
+ description: An analyte assay that measures the abundance of chloride in venous
+ blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100156
+ title: comprehensive metabolic panel venous blood chloride assay
+ OBI:2100157:
+ text: OBI:2100157
+ description: An analyte assay that measures the abundance of human aspartate
+ aminotransferase in venous blood as part of a comprehensive metabolic panel
+ order
+ meaning: OBI:2100157
+ title: comprehensive metabolic panel venous blood human aspartate aminotransferase
+ assay
+ OBI:2100158:
+ text: OBI:2100158
+ description: An analyte assay that measures the abundance of protein in venous
+ blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100158
+ title: comprehensive metabolic panel venous blood protein assay
+ OBI:2100159:
+ text: OBI:2100159
+ description: An analyte assay that measures the abundance of creatinine in
+ venous blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100159
+ title: comprehensive metabolic panel venous blood creatinine assay
+ OBI:2100160:
+ text: OBI:2100160
+ description: An analyte assay that measures the abundance of alanine aminotransferase
+ in venous blood as part of a comprehensive metabolic panel order
+ meaning: OBI:2100160
+ title: comprehensive metabolic panel venous blood alanine aminotransferase
+ assay
+ OBI:2100161:
+ text: OBI:2100161
+ description: An assay that measures LDH in venous blood
+ meaning: OBI:2100161
+ title: venous blood LDH assay
+ OBI:2100162:
+ text: OBI:2100162
+ description: An assay that measures creatine kinase MB in venous blood
+ meaning: OBI:2100162
+ title: venous blood creatine kinase MB assay
+ OBI:2100163:
+ text: OBI:2100163
+ description: An assay that measures lactic acid in venous blood
+ meaning: OBI:2100163
+ title: venous blood lactic acid assay
+ OBI:2100164:
+ text: OBI:2100164
+ description: A cytometry assay that measures the proportion of red blood cells
+ in venous blood
+ meaning: OBI:2100164
+ title: venous blood hematocrit assay
+ OBI:2100165:
+ text: OBI:2100165
+ description: An analyte assay that measures the abundance of creatinine in
+ venous blood
+ meaning: OBI:2100165
+ title: venous blood creatinine assay
+ OBI:2100166:
+ text: OBI:2100166
+ description: An analyte assay that measures the abundance of oxygen in venous
+ blood as part of a blood gas order
+ meaning: OBI:2100166
+ title: blood gas venous blood oxygen assay
+ OBI:2100167:
+ text: OBI:2100167
+ description: An analyte assay that measures the abundance of ionized calcium
+ in venous blood as part of a ionized order
+ meaning: OBI:2100167
+ title: ionized venous blood ionized calcium assay
+ OBI:2100168:
+ text: OBI:2100168
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in venous blood as part of a blood gas order
+ meaning: OBI:2100168
+ title: blood gas venous blood carbon dioxide assay
+ OBI:2100169:
+ text: OBI:2100169
+ description: An analyte assay that measures the abundance of bicarbonate in
+ venous blood as part of a blood gas order
+ meaning: OBI:2100169
+ title: blood gas venous blood bicarbonate assay
+ OBI:2100170:
+ text: OBI:2100170
+ description: An analyte assay that measures the abundance of creatinine in
+ arterial blood
+ meaning: OBI:2100170
+ title: arterial blood creatinine assay
+ OBI:2100171:
+ text: OBI:2100171
+ description: An analyte assay that measures the abundance of tacrolimus in
+ venous blood
+ meaning: OBI:2100171
+ title: venous blood tacrolimus assay
+ OBI:2100172:
+ text: OBI:2100172
+ description: An analyte assay that measures the abundance of vancomycin in
+ venous blood as part of a random order
+ meaning: OBI:2100172
+ title: random venous blood vancomycin assay
+ OBI:2100173:
+ text: OBI:2100173
+ description: An analyte assay that measures the abundance of mycophenolic
+ acid in venous blood
+ meaning: OBI:2100173
+ title: venous blood mycophenolic acid assay
+ OBI:2100174:
+ text: OBI:2100174
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in arterial blood as part of a non-vented blood gas order
+ meaning: OBI:2100174
+ title: non-vented blood gas arterial blood carbon dioxide assay
+ OBI:2100175:
+ text: OBI:2100175
+ description: An analyte assay that measures the abundance of oxygen in arterial
+ blood as part of a non-vented blood gas order
+ meaning: OBI:2100175
+ title: non-vented blood gas arterial blood oxygen assay
+ OBI:2100176:
+ text: OBI:2100176
+ description: An analyte assay that measures the abundance of bicarbonate in
+ arterial blood as part of a non-vented blood gas order
+ meaning: OBI:2100176
+ title: non-vented blood gas arterial blood bicarbonate assay
+ OBI:2100177:
+ text: OBI:2100177
+ description: An assay that measures IgG in venous blood as part of a quantitative
+ order
+ meaning: OBI:2100177
+ title: quantitative venous blood IgG assay
+ OBI:2100178:
+ text: OBI:2100178
+ description: An assay that measures IgM in venous blood as part of a quantitative
+ order
+ meaning: OBI:2100178
+ title: quantitative venous blood IgM assay
+ OBI:2100179:
+ text: OBI:2100179
+ description: An assay that measures IgA in venous blood as part of a quantitative
+ order
+ meaning: OBI:2100179
+ title: quantitative venous blood IgA assay
+ OBI:2100180:
+ text: OBI:2100180
+ description: An analyte assay that measures the abundance of sodium in arterial
+ blood
+ meaning: OBI:2100180
+ title: arterial blood sodium assay
+ OBI:2100181:
+ text: OBI:2100181
+ description: An analyte assay that measures the abundance of potassium in
+ arterial blood
+ meaning: OBI:2100181
+ title: arterial blood potassium assay
+ OBI:2100182:
+ text: OBI:2100182
+ description: An analyte assay that measures the abundance of calcium in arterial
+ blood as part of a ionized order
+ meaning: OBI:2100182
+ title: ionized arterial blood calcium assay
+ OBI:2100183:
+ text: OBI:2100183
+ description: An analyte assay that measures the abundance of bicarbonate in
+ arterial blood as part of a vented blood gas order
+ meaning: OBI:2100183
+ title: vented blood gas arterial blood bicarbonate assay
+ OBI:2100184:
+ text: OBI:2100184
+ description: An analyte assay that measures the abundance of oxygen in arterial
+ blood as part of a vented blood gas order
+ meaning: OBI:2100184
+ title: vented blood gas arterial blood oxygen assay
+ OBI:2100185:
+ text: OBI:2100185
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in arterial blood as part of a vented blood gas order
+ meaning: OBI:2100185
+ title: vented blood gas arterial blood carbon dioxide assay
+ OBI:2100186:
+ text: OBI:2100186
+ description: A cytometry assay that measures the proportion of red blood cells
+ in arterial blood
+ meaning: OBI:2100186
+ title: arterial blood hematocrit assay
+ OBI:2100187:
+ text: OBI:2100187
+ description: An analyte assay that measures the abundance of chloride in arterial
+ blood
+ meaning: OBI:2100187
+ title: arterial blood chloride assay
+ OBI:2100188:
+ text: OBI:2100188
+ description: An analyte assay that measures the abundance of hemoglobin in
+ arterial blood
+ meaning: OBI:2100188
+ title: arterial blood hemoglobin assay
+ OBI:2100189:
+ text: OBI:2100189
+ description: A cytometry assay that measures the proportion of red blood cells
+ in venous blood as part of a GEM premier blood gas order
+ meaning: OBI:2100189
+ title: GEM premier blood gas venous blood hematocrit assay
+ OBI:2100190:
+ text: OBI:2100190
+ description: An analyte assay that measures the abundance of ionized calcium
+ in venous blood as part of a GEM premier blood gas order
+ meaning: OBI:2100190
+ title: GEM premier blood gas venous blood ionized calcium assay
+ OBI:2100191:
+ text: OBI:2100191
+ description: An analyte assay that measures the abundance of potassium in
+ venous blood as part of a GEM premier blood gas order
+ meaning: OBI:2100191
+ title: GEM premier blood gas venous blood potassium assay
+ OBI:2100192:
+ text: OBI:2100192
+ description: An analyte assay that measures the abundance of oxygen in venous
+ blood as part of a GEM premier blood gas order
+ meaning: OBI:2100192
+ title: GEM premier blood gas venous blood oxygen assay
+ OBI:2100193:
+ text: OBI:2100193
+ description: An analyte assay that measures the abundance of hemoglobin in
+ venous blood as part of a GEM premier blood gas order
+ meaning: OBI:2100193
+ title: GEM premier blood gas venous blood hemoglobin assay
+ OBI:2100194:
+ text: OBI:2100194
+ description: An analyte assay that measures the abundance of bicarbonate in
+ venous blood as part of a GEM premier blood gas order
+ meaning: OBI:2100194
+ title: GEM premier blood gas venous blood bicarbonate assay
+ OBI:2100195:
+ text: OBI:2100195
+ description: An analyte assay that measures the abundance of glucose in venous
+ blood as part of a GEM premier blood gas order
+ meaning: OBI:2100195
+ title: GEM premier blood gas venous blood glucose assay
+ OBI:2100196:
+ text: OBI:2100196
+ description: An analyte assay that measures the abundance of sodium in venous
+ blood as part of a GEM premier blood gas order
+ meaning: OBI:2100196
+ title: GEM premier blood gas venous blood sodium assay
+ OBI:2100197:
+ text: OBI:2100197
+ description: An assay that measures lactic acid in venous blood as part of
+ a GEM premier blood gas order
+ meaning: OBI:2100197
+ title: GEM premier blood gas venous blood lactic acid assay
+ OBI:2100198:
+ text: OBI:2100198
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in venous blood as part of a GEM premier blood gas order
+ meaning: OBI:2100198
+ title: GEM premier blood gas venous blood carbon dioxide assay
+ OBI:2100199:
+ text: OBI:2100199
+ description: An analyte assay that measures the abundance of tobramycin in
+ venous blood as part of a trough order
+ meaning: OBI:2100199
+ title: trough venous blood tobramycin assay
+ OBI:2100200:
+ text: OBI:2100200
+ description: An analyte assay that measures the abundance of tobramycin in
+ venous blood as part of a random order
+ meaning: OBI:2100200
+ title: random venous blood tobramycin assay
+ OBI:2100201:
+ text: OBI:2100201
+ description: A cytometry assay that measures the count of metamyelocytes in
+ venous blood as part of a CBC with manual differential order
+ meaning: OBI:2100201
+ title: CBC with manual differential venous blood metamyelocyte count assay
+ OBI:2100202:
+ text: OBI:2100202
+ description: An assay that measures lactic acid in arterial blood
+ meaning: OBI:2100202
+ title: arterial blood lactic acid assay
+ OBI:2100203:
+ text: OBI:2100203
+ description: An analyte assay that measures the abundance of 25-hydroxyvitamin
+ D2 in venous blood
+ meaning: OBI:2100203
+ title: venous blood 25-hydroxyvitamin D2 assay
+ OBI:2100204:
+ text: OBI:2100204
+ description: An analyte assay that measures the abundance of digoxin in venous
+ blood
+ meaning: OBI:2100204
+ title: venous blood digoxin assay
+ OBI:2100205:
+ text: OBI:2100205
+ description: An analyte assay that measures the abundance of protein in urine
+ meaning: OBI:2100205
+ title: urine protein assay
+ OBI:2100206:
+ text: OBI:2100206
+ description: An analyte assay that measures the abundance of tobramycin in
+ venous blood
+ meaning: OBI:2100206
+ title: venous blood tobramycin assay
+ OBI:2100207:
+ text: OBI:2100207
+ description: A cytometry assay that measures the count of myelocytes in venous
+ blood as part of a CBC with manual differential order
+ meaning: OBI:2100207
+ title: CBC with manual differential venous blood myelocyte count assay
+ OBI:2100208:
+ text: OBI:2100208
+ description: An analyte assay that measures the abundance of beta-globin in
+ venous blood as part of a SPEP protein electrophoresis order
+ meaning: OBI:2100208
+ title: SPEP protein electrophoresis venous blood beta-globin assay
+ OBI:2100209:
+ text: OBI:2100209
+ description: An analyte assay that measures the abundance of albumin in venous
+ blood as part of a SPEP protein electrophoresis order
+ meaning: OBI:2100209
+ title: SPEP protein electrophoresis venous blood albumin assay
+ OBI:2100210:
+ text: OBI:2100210
+ description: An analyte assay that measures the abundance of protein in venous
+ blood as part of a SPEP protein electrophoresis order
+ meaning: OBI:2100210
+ title: SPEP protein electrophoresis venous blood protein assay
+ OBI:2100211:
+ text: OBI:2100211
+ description: An analyte assay that measures the abundance of vancomycin in
+ venous blood as part of a trough order
+ meaning: OBI:2100211
+ title: trough venous blood vancomycin assay
+ OBI:2100212:
+ text: OBI:2100212
+ description: An analyte assay that measures the abundance of protein in venous
+ blood as part of a hepatic panel order
+ meaning: OBI:2100212
+ title: hepatic panel venous blood protein assay
+ OBI:2100213:
+ text: OBI:2100213
+ description: An analyte assay that measures the abundance of bilirubin in
+ venous blood as part of a hepatic panel order
+ meaning: OBI:2100213
+ title: hepatic panel venous blood bilirubin assay
+ OBI:2100214:
+ text: OBI:2100214
+ description: An analyte assay that measures the abundance of alanine aminotransferase
+ in venous blood as part of a hepatic panel order
+ meaning: OBI:2100214
+ title: hepatic panel venous blood alanine aminotransferase assay
+ OBI:2100215:
+ text: OBI:2100215
+ description: An analyte assay that measures the abundance of human aspartate
+ aminotransferase in venous blood as part of a hepatic panel order
+ meaning: OBI:2100215
+ title: hepatic panel venous blood human aspartate aminotransferase assay
+ OBI:2100216:
+ text: OBI:2100216
+ description: An analyte assay that measures the abundance of albumin in venous
+ blood as part of a hepatic panel order
+ meaning: OBI:2100216
+ title: hepatic panel venous blood albumin assay
+ OBI:2100217:
+ text: OBI:2100217
+ description: An analyte assay that measures the abundance of human alkaline
+ phosphatase in venous blood as part of a hepatic panel order
+ meaning: OBI:2100217
+ title: hepatic panel venous blood human alkaline phosphatase assay
+ OBI:2100218:
+ text: OBI:2100218
+ description: An assay that measures glomerular filtration in venous blood
+ as part of a estimated order
+ meaning: OBI:2100218
+ title: estimated venous blood glomerular filtration assay
+ OBI:2100219:
+ text: OBI:2100219
+ description: An analyte assay that measures the abundance of creatinine in
+ venous blood as part of a DT60 order
+ meaning: OBI:2100219
+ title: DT60 venous blood creatinine assay
+ OBI:2100220:
+ text: OBI:2100220
+ description: An analyte assay that measures the abundance of glucose in venous
+ blood as part of a fasting order
+ meaning: OBI:2100220
+ title: fasting venous blood glucose assay
+ OBI:2100221:
+ text: OBI:2100221
+ description: An analyte assay that measures the abundance of amikacin in venous
+ blood as part of a random order
+ meaning: OBI:2100221
+ title: random venous blood amikacin assay
+ OBI:2100222:
+ text: OBI:2100222
+ description: An analyte assay that measures the abundance of ammonia in venous
+ blood
+ meaning: OBI:2100222
+ title: venous blood ammonia assay
+ OBI:2100223:
+ text: OBI:2100223
+ description: An analyte assay that measures the abundance of GGT in venous
+ blood
+ meaning: OBI:2100223
+ title: venous blood GGT assay
+ OBI:2100224:
+ text: OBI:2100224
+ description: An analyte assay that measures the abundance of phosphate in
+ venous blood as part of a chem11 order
+ meaning: OBI:2100224
+ title: chem11 venous blood phosphate assay
+ OBI:2100225:
+ text: OBI:2100225
+ description: An analyte assay that measures the abundance of potassium in
+ venous blood as part of a chem11 order
+ meaning: OBI:2100225
+ title: chem11 venous blood potassium assay
+ OBI:2100226:
+ text: OBI:2100226
+ description: An analyte assay that measures the abundance of calcium in venous
+ blood as part of a chem11 order
+ meaning: OBI:2100226
+ title: chem11 venous blood calcium assay
+ OBI:2100227:
+ text: OBI:2100227
+ description: An analyte assay that measures the abundance of glucose in venous
+ blood as part of a chem11 order
+ meaning: OBI:2100227
+ title: chem11 venous blood glucose assay
+ OBI:2100228:
+ text: OBI:2100228
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in venous blood as part of a chem11 order
+ meaning: OBI:2100228
+ title: chem11 venous blood carbon dioxide assay
+ OBI:2100229:
+ text: OBI:2100229
+ description: An analyte assay that measures the abundance of albumin in venous
+ blood as part of a chem11 order
+ meaning: OBI:2100229
+ title: chem11 venous blood albumin assay
+ OBI:2100230:
+ text: OBI:2100230
+ description: An analyte assay that measures the abundance of sodium in venous
+ blood as part of a chem11 order
+ meaning: OBI:2100230
+ title: chem11 venous blood sodium assay
+ OBI:2100231:
+ text: OBI:2100231
+ description: An analyte assay that measures the abundance of magnesium in
+ venous blood as part of a chem11 order
+ meaning: OBI:2100231
+ title: chem11 venous blood magnesium assay
+ OBI:2100232:
+ text: OBI:2100232
+ description: An analyte assay that measures the abundance of creatinine in
+ venous blood as part of a chem11 order
+ meaning: OBI:2100232
+ title: chem11 venous blood creatinine assay
+ OBI:2100233:
+ text: OBI:2100233
+ description: An analyte assay that measures the abundance of chloride in venous
+ blood as part of a chem11 order
+ meaning: OBI:2100233
+ title: chem11 venous blood chloride assay
+ OBI:2100234:
+ text: OBI:2100234
+ description: An assay that measures IgE in venous blood as part of a total
+ order
+ meaning: OBI:2100234
+ title: total venous blood IgE assay
+ OBI:2100235:
+ text: OBI:2100235
+ description: An analyte assay that measures the abundance of human aspartate
+ aminotransferase in venous blood as part of a chem16 order
+ meaning: OBI:2100235
+ title: chem16 venous blood human aspartate aminotransferase assay
+ OBI:2100236:
+ text: OBI:2100236
+ description: An analyte assay that measures the abundance of creatinine in
+ venous blood as part of a chem16 order
+ meaning: OBI:2100236
+ title: chem16 venous blood creatinine assay
+ OBI:2100237:
+ text: OBI:2100237
+ description: An analyte assay that measures the abundance of magnesium in
+ venous blood as part of a chem16 order
+ meaning: OBI:2100237
+ title: chem16 venous blood magnesium assay
+ OBI:2100238:
+ text: OBI:2100238
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in venous blood as part of a chem16 order
+ meaning: OBI:2100238
+ title: chem16 venous blood carbon dioxide assay
+ OBI:2100239:
+ text: OBI:2100239
+ description: An analyte assay that measures the abundance of glucose in venous
+ blood as part of a chem16 order
+ meaning: OBI:2100239
+ title: chem16 venous blood glucose assay
+ OBI:2100240:
+ text: OBI:2100240
+ description: An analyte assay that measures the abundance of calcium in venous
+ blood as part of a chem16 order
+ meaning: OBI:2100240
+ title: chem16 venous blood calcium assay
+ OBI:2100241:
+ text: OBI:2100241
+ description: An analyte assay that measures the abundance of triglyceride
+ in venous blood as part of a chem16 order
+ meaning: OBI:2100241
+ title: chem16 venous blood triglyceride assay
+ OBI:2100242:
+ text: OBI:2100242
+ description: An analyte assay that measures the abundance of sodium in venous
+ blood as part of a chem16 order
+ meaning: OBI:2100242
+ title: chem16 venous blood sodium assay
+ OBI:2100243:
+ text: OBI:2100243
+ description: An analyte assay that measures the abundance of phosphate in
+ venous blood as part of a chem16 order
+ meaning: OBI:2100243
+ title: chem16 venous blood phosphate assay
+ OBI:2100244:
+ text: OBI:2100244
+ description: An analyte assay that measures the abundance of human alkaline
+ phosphatase in venous blood as part of a chem16 order
+ meaning: OBI:2100244
+ title: chem16 venous blood human alkaline phosphatase assay
+ OBI:2100245:
+ text: OBI:2100245
+ description: An analyte assay that measures the abundance of albumin in venous
+ blood as part of a chem16 order
+ meaning: OBI:2100245
+ title: chem16 venous blood albumin assay
+ OBI:2100246:
+ text: OBI:2100246
+ description: An analyte assay that measures the abundance of bilirubin in
+ venous blood as part of a chem16 order
+ meaning: OBI:2100246
+ title: chem16 venous blood bilirubin assay
+ OBI:2100247:
+ text: OBI:2100247
+ description: An analyte assay that measures the abundance of chloride in venous
+ blood as part of a chem16 order
+ meaning: OBI:2100247
+ title: chem16 venous blood chloride assay
+ OBI:2100248:
+ text: OBI:2100248
+ description: An analyte assay that measures the abundance of alanine aminotransferase
+ in venous blood as part of a chem16 order
+ meaning: OBI:2100248
+ title: chem16 venous blood alanine aminotransferase assay
+ OBI:2100249:
+ text: OBI:2100249
+ description: An analyte assay that measures the abundance of potassium in
+ venous blood as part of a chem16 order
+ meaning: OBI:2100249
+ title: chem16 venous blood potassium assay
+ OBI:2100250:
+ text: OBI:2100250
+ description: An analyte assay that measures the abundance of glucose in arterial
+ blood as part of a POC chem8 order
+ meaning: OBI:2100250
+ title: POC chem8 arterial blood glucose assay
+ OBI:2100251:
+ text: OBI:2100251
+ description: An analyte assay that measures the abundance of ionized calcium
+ in arterial blood as part of a POC chem8 order
+ meaning: OBI:2100251
+ title: POC chem8 arterial blood ionized calcium assay
+ OBI:2100252:
+ text: OBI:2100252
+ description: An analyte assay that measures the abundance of potassium in
+ arterial blood as part of a POC chem8 order
+ meaning: OBI:2100252
+ title: POC chem8 arterial blood potassium assay
+ OBI:2100253:
+ text: OBI:2100253
+ description: An analyte assay that measures the abundance of sodium in arterial
+ blood as part of a POC chem8 order
+ meaning: OBI:2100253
+ title: POC chem8 arterial blood sodium assay
+ OBI:2100254:
+ text: OBI:2100254
+ description: An analyte assay that measures the abundance of creatinine in
+ arterial blood as part of a POC chem8 order
+ meaning: OBI:2100254
+ title: POC chem8 arterial blood creatinine assay
+ OBI:2100255:
+ text: OBI:2100255
+ description: A cytometry assay that measures the proportion of red blood cells
+ in arterial blood as part of a POC chem8 order
+ meaning: OBI:2100255
+ title: POC chem8 arterial blood hematocrit assay
+ OBI:2100256:
+ text: OBI:2100256
+ description: An analyte assay that measures the abundance of chloride in arterial
+ blood as part of a POC chem8 order
+ meaning: OBI:2100256
+ title: POC chem8 arterial blood chloride assay
+ OBI:2100257:
+ text: OBI:2100257
+ description: An analyte assay that measures the abundance of tobramycin in
+ venous blood as part of a peak order
+ meaning: OBI:2100257
+ title: peak venous blood tobramycin assay
+ OBI:2100258:
+ text: OBI:2100258
+ description: An analyte assay that measures the abundance of creatinine in
+ urine as part of a 24 hour order
+ meaning: OBI:2100258
+ title: 24 hour urine creatinine assay
+ OBI:2100259:
+ text: OBI:2100259
+ description: An analyte assay that measures the abundance of PTH in venous
+ blood as part of a intact order
+ meaning: OBI:2100259
+ title: intact venous blood PTH assay
+ OBI:2100260:
+ text: OBI:2100260
+ description: An analyte assay that measures the abundance of PSA in venous
+ blood as part of a total order
+ meaning: OBI:2100260
+ title: total venous blood PSA assay
+ OBI:2100261:
+ text: OBI:2100261
+ description: An analyte assay that measures the abundance of T3 in venous
+ blood as part of a total order
+ meaning: OBI:2100261
+ title: total venous blood T3 assay
+ OBI:2100262:
+ text: OBI:2100262
+ description: An analyte assay that measures the abundance of protein in urine
+ as part of a 24 hour order
+ meaning: OBI:2100262
+ title: 24 hour urine protein assay
+ OBI:2100263:
+ text: OBI:2100263
+ description: An analyte assay that measures the abundance of cholesterol in
+ venous blood as part of a total order
+ meaning: OBI:2100263
+ title: total venous blood cholesterol assay
+ OBI:2100264:
+ text: OBI:2100264
+ description: An analyte assay that measures the abundance of triglyceride
+ in venous blood
+ meaning: OBI:2100264
+ title: venous blood triglyceride assay
+ OBI:2100265:
+ text: OBI:2100265
+ description: A cytometry assay that measures the count of cells in cerebrospinal
+ fluid as part of a tube 4 count order
+ meaning: OBI:2100265
+ title: tube 4 count cerebrospinal fluid cell count assay
+ OBI:2100266:
+ text: OBI:2100266
+ description: An analyte assay that measures the abundance of protein in cerebrospinal
+ fluid
+ meaning: OBI:2100266
+ title: cerebrospinal fluid protein assay
+ OBI:2100267:
+ text: OBI:2100267
+ description: An analyte assay that measures the abundance of glucose in cerebrospinal
+ fluid
+ meaning: OBI:2100267
+ title: cerebrospinal fluid glucose assay
+ OBI:2100268:
+ text: OBI:2100268
+ description: A cytometry assay that measures the count of cells in cerebrospinal
+ fluid as part of a tube 1 count order
+ meaning: OBI:2100268
+ title: tube 1 count cerebrospinal fluid cell count assay
+ OBI:2100269:
+ text: OBI:2100269
+ description: An analyte assay that measures the abundance of dehydroepiandrosterone
+ in venous blood
+ meaning: OBI:2100269
+ title: venous blood dehydroepiandrosterone assay
+ OBI:2100270:
+ text: OBI:2100270
+ description: An analyte assay that measures the abundance of cortisol in venous
+ blood
+ meaning: OBI:2100270
+ title: venous blood cortisol assay
+ OBI:2100271:
+ text: OBI:2100271
+ description: An analyte assay that measures the abundance of sodium in arterial
+ blood as part of a ABL90 panel order
+ meaning: OBI:2100271
+ title: ABL90 panel arterial blood sodium assay
+ OBI:2100272:
+ text: OBI:2100272
+ description: An analyte assay that measures the abundance of oxygen in arterial
+ blood as part of a ABL90 panel order
+ meaning: OBI:2100272
+ title: ABL90 panel arterial blood oxygen assay
+ OBI:2100273:
+ text: OBI:2100273
+ description: An analyte assay that measures the abundance of glucose in arterial
+ blood as part of a ABL90 panel order
+ meaning: OBI:2100273
+ title: ABL90 panel arterial blood glucose assay
+ OBI:2100274:
+ text: OBI:2100274
+ description: An assay that measures lactic acid in arterial blood as part
+ of a ABL90 panel order
+ meaning: OBI:2100274
+ title: ABL90 panel arterial blood lactic acid assay
+ OBI:2100275:
+ text: OBI:2100275
+ description: An analyte assay that measures the abundance of hemoglobin in
+ arterial blood as part of a ABL90 panel order
+ meaning: OBI:2100275
+ title: ABL90 panel arterial blood hemoglobin assay
+ OBI:2100276:
+ text: OBI:2100276
+ description: An analyte assay that measures the abundance of chloride in arterial
+ blood as part of a ABL90 panel order
+ meaning: OBI:2100276
+ title: ABL90 panel arterial blood chloride assay
+ OBI:2100277:
+ text: OBI:2100277
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in arterial blood as part of a ABL90 panel order
+ meaning: OBI:2100277
+ title: ABL90 panel arterial blood carbon dioxide assay
+ OBI:2100278:
+ text: OBI:2100278
+ description: A cytometry assay that measures the proportion of red blood cells
+ in arterial blood as part of a ABL90 panel order
+ meaning: OBI:2100278
+ title: ABL90 panel arterial blood hematocrit assay
+ OBI:2100279:
+ text: OBI:2100279
+ description: An analyte assay that measures the abundance of calcium in arterial
+ blood as part of a ABL90 panel order
+ meaning: OBI:2100279
+ title: ABL90 panel arterial blood calcium assay
+ OBI:2100280:
+ text: OBI:2100280
+ description: An assay that measures temperature in arterial blood as part
+ of a ABL90 panel order
+ meaning: OBI:2100280
+ title: ABL90 panel arterial blood temperature assay
+ OBI:2100281:
+ text: OBI:2100281
+ description: An analyte assay that measures the abundance of bicarbonate in
+ arterial blood as part of a ABL90 panel order
+ meaning: OBI:2100281
+ title: ABL90 panel arterial blood bicarbonate assay
+ OBI:2100282:
+ text: OBI:2100282
+ description: An analyte assay that measures the abundance of potassium in
+ arterial blood as part of a ABL90 panel order
+ meaning: OBI:2100282
+ title: ABL90 panel arterial blood potassium assay
+ OBI:2100283:
+ text: OBI:2100283
+ description: A cytometry assay that measures the count of promyelocytes in
+ venous blood as part of a CBC with manual differential order
+ meaning: OBI:2100283
+ title: CBC with manual differential venous blood promyelocyte count assay
+ OBI:2100284:
+ text: OBI:2100284
+ description: An analyte assay that measures the abundance of glucose in venous
+ blood as part of a ABL90 panel order
+ meaning: OBI:2100284
+ title: ABL90 panel venous blood glucose assay
+ OBI:2100285:
+ text: OBI:2100285
+ description: An analyte assay that measures the abundance of hemoglobin in
+ venous blood as part of a ABL90 panel order
+ meaning: OBI:2100285
+ title: ABL90 panel venous blood hemoglobin assay
+ OBI:2100286:
+ text: OBI:2100286
+ description: An analyte assay that measures the abundance of ionized calcium
+ in venous blood as part of a ABL90 panel order
+ meaning: OBI:2100286
+ title: ABL90 panel venous blood ionized calcium assay
+ OBI:2100287:
+ text: OBI:2100287
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in venous blood as part of a ABL90 panel order
+ meaning: OBI:2100287
+ title: ABL90 panel venous blood carbon dioxide assay
+ OBI:2100288:
+ text: OBI:2100288
+ description: A cytometry assay that measures the proportion of red blood cells
+ in venous blood as part of a ABL90 panel order
+ meaning: OBI:2100288
+ title: ABL90 panel venous blood hematocrit assay
+ OBI:2100289:
+ text: OBI:2100289
+ description: An analyte assay that measures the abundance of sodium in venous
+ blood as part of a ABL90 panel order
+ meaning: OBI:2100289
+ title: ABL90 panel venous blood sodium assay
+ OBI:2100290:
+ text: OBI:2100290
+ description: An analyte assay that measures the abundance of oxygen in venous
+ blood as part of a ABL90 panel order
+ meaning: OBI:2100290
+ title: ABL90 panel venous blood oxygen assay
+ OBI:2100291:
+ text: OBI:2100291
+ description: An analyte assay that measures the abundance of bicarbonate in
+ venous blood as part of a ABL90 panel order
+ meaning: OBI:2100291
+ title: ABL90 panel venous blood bicarbonate assay
+ OBI:2100292:
+ text: OBI:2100292
+ description: An assay that measures lactic acid in venous blood as part of
+ a ABL90 panel order
+ meaning: OBI:2100292
+ title: ABL90 panel venous blood lactic acid assay
+ OBI:2100293:
+ text: OBI:2100293
+ description: An analyte assay that measures the abundance of chloride in venous
+ blood as part of a ABL90 panel order
+ meaning: OBI:2100293
+ title: ABL90 panel venous blood chloride assay
+ OBI:2100294:
+ text: OBI:2100294
+ description: An analyte assay that measures the abundance of T4 in venous
+ blood
+ meaning: OBI:2100294
+ title: venous blood T4 assay
+ OBI:2100295:
+ text: OBI:2100295
+ description: An analyte assay that measures the abundance of T4 in venous
+ blood as part of a free order
+ meaning: OBI:2100295
+ title: free venous blood T4 assay
+ OBI:2100296:
+ text: OBI:2100296
+ description: An analyte assay that measures the abundance of potassium in
+ venous blood as part of a ABL90 panel order
+ meaning: OBI:2100296
+ title: ABL90 panel venous blood potassium assay
+ OBI:2100297:
+ text: OBI:2100297
+ description: An analyte assay that measures the abundance of sodium in urine
+ meaning: OBI:2100297
+ title: urine sodium assay
+ OBI:2100298:
+ text: OBI:2100298
+ description: An analyte assay that measures the abundance of albumin in venous
+ blood as part of a bone profile order
+ meaning: OBI:2100298
+ title: bone profile venous blood albumin assay
+ OBI:2100299:
+ text: OBI:2100299
+ description: An analyte assay that measures the abundance of calcium in venous
+ blood as part of a bone profile order
+ meaning: OBI:2100299
+ title: bone profile venous blood calcium assay
+ OBI:2100300:
+ text: OBI:2100300
+ description: An analyte assay that measures the abundance of human alkaline
+ phosphatase in venous blood as part of a bone profile order
+ meaning: OBI:2100300
+ title: bone profile venous blood human alkaline phosphatase assay
+ OBI:2100301:
+ text: OBI:2100301
+ description: An analyte assay that measures the abundance of protein in venous
+ blood as part of a bone profile order
+ meaning: OBI:2100301
+ title: bone profile venous blood protein assay
+ OBI:2100302:
+ text: OBI:2100302
+ description: An analyte assay that measures the abundance of phosphate in
+ venous blood as part of a bone profile order
+ meaning: OBI:2100302
+ title: bone profile venous blood phosphate assay
+ OBI:2100303:
+ text: OBI:2100303
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in arterial blood as part of a ABG/electrolytes order
+ meaning: OBI:2100303
+ title: ABG/electrolytes arterial blood carbon dioxide assay
+ OBI:2100304:
+ text: OBI:2100304
+ description: An analyte assay that measures the abundance of oxygen in arterial
+ blood as part of a ABG/electrolytes order
+ meaning: OBI:2100304
+ title: ABG/electrolytes arterial blood oxygen assay
+ OBI:2100305:
+ text: OBI:2100305
+ description: An analyte assay that measures the abundance of ionized calcium
+ in arterial blood as part of a ABG/electrolytes order
+ meaning: OBI:2100305
+ title: ABG/electrolytes arterial blood ionized calcium assay
+ OBI:2100306:
+ text: OBI:2100306
+ description: A cytometry assay that measures the count of nucleated RBCs in
+ venous blood as part of a CBC with automated differential order
+ meaning: OBI:2100306
+ title: CBC with automated differential venous blood nucleated RBC count assay
+ OBI:2100307:
+ text: OBI:2100307
+ description: An analyte assay that measures the abundance of methemoglobin
+ in venous blood as part of a ABL90 panel order
+ meaning: OBI:2100307
+ title: ABL90 panel venous blood methemoglobin assay
+ OBI:2100308:
+ text: OBI:2100308
+ description: An analyte assay that measures the abundance of methemoglobin
+ in arterial blood as part of a ABL90 panel order
+ meaning: OBI:2100308
+ title: ABL90 panel arterial blood methemoglobin assay
+ OBI:2100309:
+ text: OBI:2100309
+ description: An analyte assay that measures the abundance of valproic acid
+ in venous blood
+ meaning: OBI:2100309
+ title: venous blood valproic acid assay
+ OBI:2100310:
+ text: OBI:2100310
+ description: An analyte assay that measures the abundance of c-reactive protein
+ in venous blood as part of a high sensitivity cardiac/neonatal order
+ meaning: OBI:2100310
+ title: high sensitivity cardiac/neonatal venous blood c-reactive protein assay
+ OBI:2100311:
+ text: OBI:2100311
+ description: An analyte assay that measures the abundance of creatinine in
+ arterial blood as part of a POC order
+ meaning: OBI:2100311
+ title: POC arterial blood creatinine assay
+ OBI:2100312:
+ text: OBI:2100312
+ description: An analyte assay that measures the abundance of bicarbonate in
+ arterial blood as part of a GEM4000 ANLCOOX order
+ meaning: OBI:2100312
+ title: GEM4000 ANLCOOX arterial blood bicarbonate assay
+ OBI:2100313:
+ text: OBI:2100313
+ description: An analyte assay that measures the abundance of oxygen in arterial
+ blood as part of a GEM4000 ANLCOOX order
+ meaning: OBI:2100313
+ title: GEM4000 ANLCOOX arterial blood oxygen assay
+ OBI:2100314:
+ text: OBI:2100314
+ description: A cytometry assay that measures the proportion of red blood cells
+ in arterial blood as part of a GEM4000 ANLCOOX order
+ meaning: OBI:2100314
+ title: GEM4000 ANLCOOX arterial blood hematocrit assay
+ OBI:2100315:
+ text: OBI:2100315
+ description: An assay that measures temperature in arterial blood as part
+ of a GEM4000 ANLCOOX order
+ meaning: OBI:2100315
+ title: GEM4000 ANLCOOX arterial blood temperature assay
+ OBI:2100316:
+ text: OBI:2100316
+ description: An analyte assay that measures the abundance of hemoglobin in
+ arterial blood as part of a GEM4000 ANLCOOX order
+ meaning: OBI:2100316
+ title: GEM4000 ANLCOOX arterial blood hemoglobin assay
+ OBI:2100317:
+ text: OBI:2100317
+ description: An analyte assay that measures the abundance of potassium in
+ arterial blood as part of a GEM4000 ANLCOOX order
+ meaning: OBI:2100317
+ title: GEM4000 ANLCOOX arterial blood potassium assay
+ OBI:2100318:
+ text: OBI:2100318
+ description: An analyte assay that measures the abundance of glucose in arterial
+ blood as part of a GEM4000 ANLCOOX order
+ meaning: OBI:2100318
+ title: GEM4000 ANLCOOX arterial blood glucose assay
+ OBI:2100319:
+ text: OBI:2100319
+ description: An analyte assay that measures the abundance of ionized calcium
+ in arterial blood as part of a GEM4000 ANLCOOX order
+ meaning: OBI:2100319
+ title: GEM4000 ANLCOOX arterial blood ionized calcium assay
+ OBI:2100320:
+ text: OBI:2100320
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in arterial blood as part of a GEM4000 ANLCOOX order
+ meaning: OBI:2100320
+ title: GEM4000 ANLCOOX arterial blood carbon dioxide assay
+ OBI:2100321:
+ text: OBI:2100321
+ description: An analyte assay that measures the abundance of sodium in arterial
+ blood as part of a GEM4000 ANLCOOX order
+ meaning: OBI:2100321
+ title: GEM4000 ANLCOOX arterial blood sodium assay
+ OBI:2100322:
+ text: OBI:2100322
+ description: An analyte assay that measures the abundance of calcium in venous
+ blood as part of a ionized order
+ meaning: OBI:2100322
+ title: ionized venous blood calcium assay
+ OBI:2100323:
+ text: OBI:2100323
+ description: An analyte assay that measures the abundance of hemoglobin in
+ venous blood
+ meaning: OBI:2100323
+ title: venous blood hemoglobin assay
+ OBI:2100324:
+ text: OBI:2100324
+ description: A cytometry assay that measures the count of megakaryocytes in
+ venous blood as part of a CBC with manual differential order
+ meaning: OBI:2100324
+ title: CBC with manual differential venous blood megakaryocyte count assay
+ OBI:2100325:
+ text: OBI:2100325
+ description: An analyte assay that measures the abundance of c-reactive protein
+ in venous blood as part of a non-cardiac order
+ meaning: OBI:2100325
+ title: non-cardiac venous blood c-reactive protein assay
+ OBI:2100326:
+ text: OBI:2100326
+ description: An analyte assay that measures the abundance of PTH in venous
+ blood as part of a intraoperative order
+ meaning: OBI:2100326
+ title: intraoperative venous blood PTH assay
+ OBI:2100327:
+ text: OBI:2100327
+ description: An analyte assay that measures the abundance of parathyroid hormone
+ in venous blood
+ meaning: OBI:2100327
+ title: venous blood parathyroid hormone assay
+ OBI:2100328:
+ text: OBI:2100328
+ description: An analyte assay that measures the abundance of protein in bodily
+ fluid as part of a total order
+ meaning: OBI:2100328
+ title: total bodily fluid protein assay
+ OBI:2100329:
+ text: OBI:2100329
+ description: An analyte assay that measures the abundance of glucose in bodily
+ fluid
+ meaning: OBI:2100329
+ title: bodily fluid glucose assay
+ OBI:2100330:
+ text: OBI:2100330
+ description: A cytometry assay that measures the count of cells in bodily
+ fluid as part of a count order
+ meaning: OBI:2100330
+ title: count bodily fluid cell count assay
+ OBI:2100331:
+ text: OBI:2100331
+ description: A cytometry assay that measures the count of segmented neutrophils
+ in bodily fluid as part of a manual differential order
+ meaning: OBI:2100331
+ title: manual differential bodily fluid segmented neutrophil count assay
+ OBI:2100332:
+ text: OBI:2100332
+ description: A cytometry assay that measures the count of mesothelial cells
+ in bodily fluid as part of a manual differential order
+ meaning: OBI:2100332
+ title: manual differential bodily fluid mesothelial cell count assay
+ OBI:2100333:
+ text: OBI:2100333
+ description: A cytometry assay that measures the count of monocytes in bodily
+ fluid as part of a manual differential order
+ meaning: OBI:2100333
+ title: manual differential bodily fluid monocyte count assay
+ OBI:2100334:
+ text: OBI:2100334
+ description: A cytometry assay that measures the count of lymphocytes in bodily
+ fluid as part of a manual differential order
+ meaning: OBI:2100334
+ title: manual differential bodily fluid lymphocyte count assay
+ OBI:2100335:
+ text: OBI:2100335
+ description: A cytometry assay that measures the count of macrophages in bodily
+ fluid as part of a manual differential order
+ meaning: OBI:2100335
+ title: manual differential bodily fluid macrophage count assay
+ OBI:2100336:
+ text: OBI:2100336
+ description: A cytometry assay that measures the count of basophils in bodily
+ fluid as part of a manual differential order
+ meaning: OBI:2100336
+ title: manual differential bodily fluid basophil count assay
+ OBI:2100337:
+ text: OBI:2100337
+ description: A cytometry assay that measures the count of eosinophils in bodily
+ fluid as part of a manual differential order
+ meaning: OBI:2100337
+ title: manual differential bodily fluid eosinophil count assay
+ OBI:2100338:
+ text: OBI:2100338
+ description: An analyte assay that measures the abundance of bilirubin in
+ venous blood as part of a liver function order
+ meaning: OBI:2100338
+ title: liver function venous blood bilirubin assay
+ OBI:2100339:
+ text: OBI:2100339
+ description: An analyte assay that measures the abundance of alanine aminotransferase
+ in venous blood as part of a liver function order
+ meaning: OBI:2100339
+ title: liver function venous blood alanine aminotransferase assay
+ OBI:2100340:
+ text: OBI:2100340
+ description: An analyte assay that measures the abundance of human aspartate
+ aminotransferase in venous blood as part of a liver function order
+ meaning: OBI:2100340
+ title: liver function venous blood human aspartate aminotransferase assay
+ OBI:2100341:
+ text: OBI:2100341
+ description: An analyte assay that measures the abundance of albumin in venous
+ blood as part of a liver function order
+ meaning: OBI:2100341
+ title: liver function venous blood albumin assay
+ OBI:2100342:
+ text: OBI:2100342
+ description: An analyte assay that measures the abundance of protein in venous
+ blood as part of a liver function order
+ meaning: OBI:2100342
+ title: liver function venous blood protein assay
+ OBI:2100343:
+ text: OBI:2100343
+ description: An analyte assay that measures the abundance of human alkaline
+ phosphatase in venous blood as part of a liver function order
+ meaning: OBI:2100343
+ title: liver function venous blood human alkaline phosphatase assay
+ OBI:2100344:
+ text: OBI:2100344
+ description: An analyte assay that measures the abundance of folic acid in
+ venous blood as part of a vitamin B12 and Folate order
+ meaning: OBI:2100344
+ title: vitamin B12 and Folate venous blood folic acid assay
+ OBI:2100345:
+ text: OBI:2100345
+ description: A cytometry assay that measures the count of cells in bodily
+ fluid
+ meaning: OBI:2100345
+ title: bodily fluid cell count assay
+ OBI:2100346:
+ text: OBI:2100346
+ description: A cytometry assay that measures the count of reticulocytes in
+ venous blood
+ meaning: OBI:2100346
+ title: venous blood reticulocyte count assay
+ OBI:2100347:
+ text: OBI:2100347
+ description: An analyte assay that measures the abundance of cholesterol in
+ bodily fluid
+ meaning: OBI:2100347
+ title: bodily fluid cholesterol assay
+ OBI:2100348:
+ text: OBI:2100348
+ description: An analyte assay that measures the abundance of thyroid stimulating
+ hormone in venous blood as part of a TSH reflex Free T4 order
+ meaning: OBI:2100348
+ title: TSH reflex Free T4 venous blood thyroid stimulating hormone assay
+ OBI:2100349:
+ text: OBI:2100349
+ description: An analyte assay that measures the abundance of bilirubin in
+ venous blood as part of a direct order
+ meaning: OBI:2100349
+ title: direct venous blood bilirubin assay
+ OBI:2100350:
+ text: OBI:2100350
+ description: An analyte assay that measures the abundance of T3 in venous
+ blood as part of a free order
+ meaning: OBI:2100350
+ title: free venous blood T3 assay
+ OBI:2100351:
+ text: OBI:2100351
+ description: An analyte assay that measures the abundance of albumin in bodily
+ fluid
+ meaning: OBI:2100351
+ title: bodily fluid albumin assay
+ OBI:2100352:
+ text: OBI:2100352
+ description: An analyte assay that measures the abundance of triglyceride
+ in bodily fluid
+ meaning: OBI:2100352
+ title: bodily fluid triglyceride assay
+ OBI:2100353:
+ text: OBI:2100353
+ description: A cytometry assay that measures the proportion of red blood cells
+ in venous blood as part of a hemoglobin and hematocrit order
+ meaning: OBI:2100353
+ title: hemoglobin and hematocrit venous blood hematocrit assay
+ OBI:2100354:
+ text: OBI:2100354
+ description: An analyte assay that measures the abundance of hemoglobin in
+ venous blood as part of a hemoglobin and hematocrit order
+ meaning: OBI:2100354
+ title: hemoglobin and hematocrit venous blood hemoglobin assay
+ OBI:2100355:
+ text: OBI:2100355
+ description: An analyte assay that measures the abundance of ionized calcium
+ in venous blood
+ meaning: OBI:2100355
+ title: venous blood ionized calcium assay
+ OBI:2100356:
+ text: OBI:2100356
+ description: An assay that measures temperature in venous blood
+ meaning: OBI:2100356
+ title: venous blood temperature assay
+ OBI:2100357:
+ text: OBI:2100357
+ description: An analyte assay that measures the abundance of bicarbonate in
+ venous blood
+ meaning: OBI:2100357
+ title: venous blood bicarbonate assay
+ OBI:2100358:
+ text: OBI:2100358
+ description: An analyte assay that measures the abundance of oxygen in venous
+ blood
+ meaning: OBI:2100358
+ title: venous blood oxygen assay
+ OBI:2100359:
+ text: OBI:2100359
+ description: An assay that measures osmolality in venous blood
+ meaning: OBI:2100359
+ title: venous blood osmolality assay
+ OBI:2100360:
+ text: OBI:2100360
+ description: A cytometry assay that measures the count of platelets in venous
+ blood as part of a liver fibrosis (chronic viral hepatitis) order
+ meaning: OBI:2100360
+ title: liver fibrosis (chronic viral hepatitis) venous blood platelet count
+ assay
+ OBI:2100361:
+ text: OBI:2100361
+ description: An analyte assay that measures the abundance of T3 in venous
+ blood
+ meaning: OBI:2100361
+ title: venous blood T3 assay
+ OBI:2100362:
+ text: OBI:2100362
+ description: A cytometry assay that measures the count of neutrophils in venous
+ blood as part of a CBC with manual differential order
+ meaning: OBI:2100362
+ title: CBC with manual differential venous blood neutrophil count assay
+ OBI:2100363:
+ text: OBI:2100363
+ description: An analyte assay that measures the abundance of creatinine in
+ urine as part of a creatinine clearance order
+ meaning: OBI:2100363
+ title: creatinine clearance urine creatinine assay
+ OBI:2100364:
+ text: OBI:2100364
+ description: An analyte assay that measures the abundance of beta hydroxybutryic
+ acid in venous blood
+ meaning: OBI:2100364
+ title: venous blood beta hydroxybutryic acid assay
+ OBI:2100365:
+ text: OBI:2100365
+ description: A cytometry assay that measures the count of megakaryocytes in
+ venous blood
+ meaning: OBI:2100365
+ title: venous blood megakaryocyte count assay
+ OBI:2100366:
+ text: OBI:2100366
+ description: A cytometry assay that measures the count of nucleated RBCs in
+ venous blood
+ meaning: OBI:2100366
+ title: venous blood nucleated RBC count assay
+ OBI:2100367:
+ text: OBI:2100367
+ description: A cytometry assay that measures the count of WBCs in venous blood
+ meaning: OBI:2100367
+ title: venous blood WBC count assay
+ OBI:2100368:
+ text: OBI:2100368
+ description: A cytometry assay that measures the count of reticulocytes in
+ venous blood as part of a automated count order
+ meaning: OBI:2100368
+ title: automated count venous blood reticulocyte count assay
+ OBI:2100369:
+ text: OBI:2100369
+ description: An analyte assay that measures the abundance of homocysteine
+ in venous blood as part of a total order
+ meaning: OBI:2100369
+ title: total venous blood homocysteine assay
+ OBI:2100370:
+ text: OBI:2100370
+ description: An analyte assay that measures the abundance of Ceruloplasmin
+ in venous blood
+ meaning: OBI:2100370
+ title: venous blood Ceruloplasmin assay
+ OBI:2100371:
+ text: OBI:2100371
+ description: An analyte assay that measures the abundance of bicarbonate in
+ arterial blood as part of a GEM4 order
+ meaning: OBI:2100371
+ title: GEM4 arterial blood bicarbonate assay
+ OBI:2100372:
+ text: OBI:2100372
+ description: An assay that measures lactic acid in arterial blood as part
+ of a GEM4 order
+ meaning: OBI:2100372
+ title: GEM4 arterial blood lactic acid assay
+ OBI:2100373:
+ text: OBI:2100373
+ description: An analyte assay that measures the abundance of hemoglobin in
+ arterial blood as part of a GEM4 order
+ meaning: OBI:2100373
+ title: GEM4 arterial blood hemoglobin assay
+ OBI:2100374:
+ text: OBI:2100374
+ description: An analyte assay that measures the abundance of sodium in arterial
+ blood as part of a GEM4 order
+ meaning: OBI:2100374
+ title: GEM4 arterial blood sodium assay
+ OBI:2100375:
+ text: OBI:2100375
+ description: An analyte assay that measures the abundance of potassium in
+ arterial blood as part of a GEM4 order
+ meaning: OBI:2100375
+ title: GEM4 arterial blood potassium assay
+ OBI:2100376:
+ text: OBI:2100376
+ description: An assay that measures temperature in arterial blood as part
+ of a GEM4 order
+ meaning: OBI:2100376
+ title: GEM4 arterial blood temperature assay
+ OBI:2100377:
+ text: OBI:2100377
+ description: An analyte assay that measures the abundance of glucose in arterial
+ blood as part of a GEM4 order
+ meaning: OBI:2100377
+ title: GEM4 arterial blood glucose assay
+ OBI:2100378:
+ text: OBI:2100378
+ description: An analyte assay that measures the abundance of oxygen in arterial
+ blood as part of a GEM4 order
+ meaning: OBI:2100378
+ title: GEM4 arterial blood oxygen assay
+ OBI:2100379:
+ text: OBI:2100379
+ description: A cytometry assay that measures the proportion of red blood cells
+ in arterial blood as part of a GEM4 order
+ meaning: OBI:2100379
+ title: GEM4 arterial blood hematocrit assay
+ OBI:2100380:
+ text: OBI:2100380
+ description: An analyte assay that measures the abundance of ionized calcium
+ in arterial blood as part of a GEM4 order
+ meaning: OBI:2100380
+ title: GEM4 arterial blood ionized calcium assay
+ OBI:2100381:
+ text: OBI:2100381
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in arterial blood as part of a GEM4 order
+ meaning: OBI:2100381
+ title: GEM4 arterial blood carbon dioxide assay
+ OBI:2100382:
+ text: OBI:2100382
+ description: A cytometry assay that measures the count of platelets in venous
+ blood as part of a liver fibrosis (NAFLD) order
+ meaning: OBI:2100382
+ title: liver fibrosis (NAFLD) venous blood platelet count assay
+ OBI:2100383:
+ text: OBI:2100383
+ description: An analyte assay that measures the abundance of beta hydroxybutric
+ acid in venous blood
+ meaning: OBI:2100383
+ title: venous blood beta hydroxybutric acid assay
+ OBI:2100384:
+ text: OBI:2100384
+ description: A cytometry assay that measures the count of plasma cells in
+ venous blood as part of a CBC with manual differential order
+ meaning: OBI:2100384
+ title: CBC with manual differential venous blood plasma cell count assay
+ OBI:2100385:
+ text: OBI:2100385
+ description: An analyte assay that measures the abundance of erythropoietin
+ in venous blood
+ meaning: OBI:2100385
+ title: venous blood erythropoietin assay
+ OBI:2100386:
+ text: OBI:2100386
+ description: An analyte assay that measures the abundance of oxygen in arterial
+ blood as part of a blood gas order
+ meaning: OBI:2100386
+ title: blood gas arterial blood oxygen assay
+ OBI:2100387:
+ text: OBI:2100387
+ description: An analyte assay that measures the abundance of bicarbonate in
+ arterial blood as part of a blood gas order
+ meaning: OBI:2100387
+ title: blood gas arterial blood bicarbonate assay
+ OBI:2100388:
+ text: OBI:2100388
+ description: An analyte assay that measures the abundance of carbon dioxide
+ in arterial blood as part of a blood gas order
+ meaning: OBI:2100388
+ title: blood gas arterial blood carbon dioxide assay
+ OBI:2100389:
+ text: OBI:2100389
+ description: An analyte assay that measures the abundance of PSA in venous
+ blood as part of a free/total order
+ meaning: OBI:2100389
+ title: free/total venous blood PSA assay
+ OBI:2100390:
+ text: OBI:2100390
+ description: A cytometry assay that measures the count of lymphocytes in cerebrospinal
+ fluid
+ meaning: OBI:2100390
+ title: cerebrospinal fluid lymphocyte count assay
+ OBI:2100391:
+ text: OBI:2100391
+ description: A cytometry assay that measures the count of segmented neutrophils
+ in cerebrospinal fluid
+ meaning: OBI:2100391
+ title: cerebrospinal fluid segmented neutrophil count assay
+ OBI:2100392:
+ text: OBI:2100392
+ description: A cytometry assay that measures the count of mesothelial cells
+ in cerebrospinal fluid
+ meaning: OBI:2100392
+ title: cerebrospinal fluid mesothelial cell count assay
+ OBI:2100393:
+ text: OBI:2100393
+ description: A cytometry assay that measures the count of macrophages in cerebrospinal
+ fluid
+ meaning: OBI:2100393
+ title: cerebrospinal fluid macrophage count assay
+ OBI:2100394:
+ text: OBI:2100394
+ description: A cytometry assay that measures the count of basophils in cerebrospinal
+ fluid
+ meaning: OBI:2100394
+ title: cerebrospinal fluid basophil count assay
+ OBI:2100395:
+ text: OBI:2100395
+ description: A cytometry assay that measures the count of monocytes in cerebrospinal
+ fluid
+ meaning: OBI:2100395
+ title: cerebrospinal fluid monocyte count assay
+ OBI:2100396:
+ text: OBI:2100396
+ description: A cytometry assay that measures the count of eosinophils in cerebrospinal
+ fluid
+ meaning: OBI:2100396
+ title: cerebrospinal fluid eosinophil count assay
+ OBI:2100397:
+ text: OBI:2100397
+ description: An analyte assay that measures the abundance of beta-2-microglobulin
+ in venous blood
+ meaning: OBI:2100397
+ title: venous blood beta-2-microglobulin assay
+ OBI:2100398:
+ text: OBI:2100398
+ description: An analyte assay that measures the abundance of low density lipoprotein
+ in venous blood as part of a Lipid panel reflex direct order
+ meaning: OBI:2100398
+ title: lipid panel reflex direct venous blood low density lipoprotein assay
+ OBI:2100399:
+ text: OBI:2100399
+ description: An analyte assay that measures the abundance of triglyceride
+ in venous blood as part of a Lipid panel reflex direct order
+ meaning: OBI:2100399
+ title: lipid panel reflex direct venous blood triglyceride assay
+ OBI:2100400:
+ text: OBI:2100400
+ description: An analyte assay that measures the abundance of cholesterol in
+ venous blood as part of a Lipid panel reflex direct order
+ meaning: OBI:2100400
+ title: lipid panel reflex direct venous blood cholesterol assay
+ OBI:2100401:
+ text: OBI:2100401
+ description: An analyte assay that measures the abundance of high density
+ lipoprotein in venous blood as part of a Lipid panel reflex direct order
+ meaning: OBI:2100401
+ title: lipid panel reflex direct venous blood high density lipoprotein assay
+ OBI:2100402:
+ text: OBI:2100402
+ description: A DNA sequencing assay in which the DNA input is derived from
+ pooled clones (for example BACs and Fosmids) is sequenced.
+ meaning: OBI:2100402
+ title: pooled clone sequencing assay
+ OBI:9999994:
+ text: OBI:9999994
+ description: An in vitro cell killing assay in which radioactive chromium
+ is absorbed by cells and released into supernatant when the cells die. The
+ amount of radioactivity measured in the supernatant is a proxy for the number
+ of cells that have died.
+ meaning: OBI:9999994
+ title: chromium release assay
+ reachable_from:
+ source_ontology: bioregistry:obi
+ source_nodes:
+ - OBI:0000070
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: true
+ EnumAsserterType:
+ name: EnumAsserterType
+ description: Individuals or organizations making assertions.
+ from_schema: https://includedcc.org/common-access-model/EnumAsserterType
+ permissible_values:
+ CAMO:0000016:
+ text: CAMO:0000016
+ description: Assertion made by research staff.
+ title: Research Staff Asserted
+ aliases:
+ - investigator_assessment
+ CAMO:0000017:
+ text: CAMO:0000017
+ description: Assertion documented by a healthcare system or provider.
+ title: Healthcare Asserted
+ aliases:
+ - medical_record
+ CAMO:0000018:
+ text: CAMO:0000018
+ description: Assertion made by a study participant, their representative,
+ or some combination.
+ title: Participant or Representative Asserted
+ aliases:
+ - participant_or_caregiver_report
+ CAMO:0000019:
+ text: CAMO:0000019
+ description: Assertion made by a study participant.
+ title: Participant Asserted
+ CAMO:0000020:
+ text: CAMO:0000020
+ description: Assertion made by a study participant's representative or representatives.
+ title: Representative Asserted
+ CAMO:0000021:
+ text: CAMO:0000021
+ description: Assertion made by a study participant's caregiver or caregivers.
+ title: Caregiver Asserted
+ reachable_from:
+ source_ontology: camo
+ source_nodes:
+ - CAMO:0000015
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: true
+ EnumAvailabilityStatus:
+ name: EnumAvailabilityStatus
+ description: Is this item available for use?
+ from_schema: https://includedcc.org/common-access-model/EnumAvailabilityStatus
+ permissible_values:
+ snomedct:103328004:
+ text: snomedct:103328004
+ description: The item is available to users, authorization/request permitting.
+ meaning: snomedct:103328004
+ title: Available
+ snomedct:103329007:
+ text: snomedct:103329007
+ description: The item is not available to users.
+ meaning: snomedct:103329007
+ title: Unavailable
+ EnumDataCategory:
+ name: EnumDataCategory
+ description: Categories of data which may be collected about participants.
+ title: Data Category
+ from_schema: https://includedcc.org/common-access-model/EnumDataCategory
+ permissible_values:
+ edam:topic_0077:
+ text: edam:topic_0077
+ description: The processing and analysis of nucleic acid sequence, structural
+ and other data.
+ meaning: edam:topic_0077
+ title: Nucleic acids
+ edam:topic_0078:
+ text: edam:topic_0078
+ description: Archival, processing and analysis of protein data, typically
+ molecular sequence and structural data.
+ meaning: edam:topic_0078
+ title: Proteins
+ edam:topic_0080:
+ text: edam:topic_0080
+ description: The archival, processing and analysis of molecular sequences
+ (monomer composition of polymers) including molecular sequence data resources,
+ sequence sites, alignments, motifs and profiles.
+ meaning: edam:topic_0080
+ title: Sequence analysis
+ edam:topic_0081:
+ text: edam:topic_0081
+ description: The curation, processing, analysis and prediction of data about
+ the structure of biological molecules, typically proteins and nucleic acids
+ and other macromolecules.
+ meaning: edam:topic_0081
+ title: Structure analysis
+ edam:topic_0082:
+ text: edam:topic_0082
+ description: The prediction of molecular structure, including the prediction,
+ modelling, recognition or design of protein secondary or tertiary structure
+ or other structural features, and the folding of nucleic acid molecules
+ and the prediction or design of nucleic acid (typically RNA) sequences with
+ specific conformations.
+ meaning: edam:topic_0082
+ title: Structure prediction
+ edam:topic_0084:
+ text: edam:topic_0084
+ description: The study of evolutionary relationships amongst organisms.
+ meaning: edam:topic_0084
+ title: Phylogeny
+ edam:topic_0085:
+ text: edam:topic_0085
+ description: The study of gene or protein functions and their interactions
+ in totality in a given organism, tissue, cell etc.
+ meaning: edam:topic_0085
+ title: Functional genomics
+ edam:topic_0089:
+ text: edam:topic_0089
+ description: The conceptualisation, categorisation and nomenclature (naming)
+ of entities or phenomena within biology or bioinformatics. This includes
+ formal ontologies, controlled vocabularies, structured glossary, symbols
+ and terminology or other related resource.
+ meaning: edam:topic_0089
+ title: Ontology and terminology
+ edam:topic_0091:
+ text: edam:topic_0091
+ description: The archival, curation, processing and analysis of complex biological
+ data.
+ meaning: edam:topic_0091
+ title: Bioinformatics
+ edam:topic_0092:
+ text: edam:topic_0092
+ description: Rendering (drawing on a computer screen) or visualisation of
+ molecular sequences, structures or other biomolecular data.
+ meaning: edam:topic_0092
+ title: Data visualisation
+ edam:topic_0097:
+ text: edam:topic_0097
+ description: The archival, curation, processing and analysis of nucleic acid
+ structural information, such as whole structures, structural features and
+ alignments, and associated annotation.
+ meaning: edam:topic_0097
+ title: Nucleic acid structure analysis
+ edam:topic_0099:
+ text: edam:topic_0099
+ description: RNA sequences and structures.
+ meaning: edam:topic_0099
+ title: RNA
+ edam:topic_0102:
+ text: edam:topic_0102
+ description: The mapping of complete (typically nucleotide) sequences. Mapping
+ (in the sense of short read alignment, or more generally, just alignment)
+ has application in RNA-Seq analysis (mapping of transcriptomics reads),
+ variant discovery (e.g. mapping of exome capture), and re-sequencing (mapping
+ of WGS reads).
+ meaning: edam:topic_0102
+ title: Mapping
+ edam:topic_0108:
+ text: edam:topic_0108
+ description: The translation of mRNA into protein and subsequent protein processing
+ in the cell.
+ meaning: edam:topic_0108
+ title: Protein expression
+ edam:topic_0114:
+ text: edam:topic_0114
+ description: Gene structure, regions which make an RNA product and features
+ such as promoters, coding regions, gene fusion, splice sites etc.
+ meaning: edam:topic_0114
+ title: Gene structure
+ edam:topic_0121:
+ text: edam:topic_0121
+ description: Proteomics is in the narrow sense (sensu stricto) the application
+ of methods to separate, characterise, identify, and quantify all proteins
+ (the proteome) - or a substantial set of proteins - that are present in
+ a sample. Proteomics in the broad sense is the science of proteins and peptides
+ on the large scale.
+ meaning: edam:topic_0121
+ title: Proteomics
+ edam:topic_0122:
+ text: edam:topic_0122
+ description: The elucidation of the three dimensional structure for all (available)
+ proteins in a given organism.
+ meaning: edam:topic_0122
+ title: Structural genomics
+ edam:topic_0123:
+ text: edam:topic_0123
+ description: The study of the physical and biochemical properties of peptides
+ and proteins, for example the hydrophobic, hydrophilic and charge properties
+ of a protein.
+ meaning: edam:topic_0123
+ title: Protein properties
+ edam:topic_0128:
+ text: edam:topic_0128
+ description: Protein-protein, protein-DNA/RNA and protein-ligand interactions,
+ including analysis of known interactions and prediction of putative interactions.
+ meaning: edam:topic_0128
+ title: Protein interactions
+ edam:topic_0130:
+ text: edam:topic_0130
+ description: Protein stability, folding (in 3D space) and protein sequence-structure-function
+ relationships. This includes for example study of inter-atomic or inter-residue
+ interactions in protein (3D) structures, the effect of mutation, and the
+ design of proteins with specific properties, typically by designing changes
+ (via site-directed mutagenesis) to an existing protein.
+ meaning: edam:topic_0130
+ title: Protein folding, stability and design
+ edam:topic_0140:
+ text: edam:topic_0140
+ description: The study of how proteins are transported within and without
+ the cell, including signal peptides, protein subcellular localisation and
+ export.
+ meaning: edam:topic_0140
+ title: Protein targeting and localisation
+ edam:topic_0152:
+ text: edam:topic_0152
+ description: Carbohydrates, typically including structural information.
+ meaning: edam:topic_0152
+ title: Carbohydrates
+ edam:topic_0153:
+ text: edam:topic_0153
+ description: Lipids and their structures.
+ meaning: edam:topic_0153
+ title: Lipidomics
+ edam:topic_0154:
+ text: edam:topic_0154
+ description: Small molecules of biological significance, typically archival,
+ curation, processing and analysis of structural information.
+ meaning: edam:topic_0154
+ title: Small molecules
+ edam:topic_0157:
+ text: edam:topic_0157
+ description: The archival, processing and analysis of the basic character
+ composition of molecular sequences, for example character or word frequency,
+ ambiguity, complexity, particularly regions of low complexity, and repeats
+ or the repetitive nature of molecular sequences.
+ meaning: edam:topic_0157
+ title: Sequence composition, complexity and repeats
+ edam:topic_0160:
+ text: edam:topic_0160
+ description: The archival, detection, prediction and analysis of positional
+ features such as functional and other key sites, in molecular sequences
+ and the conserved patterns (motifs, profiles etc.) that may be used to describe
+ them.
+ meaning: edam:topic_0160
+ title: Sequence sites, features and motifs
+ edam:topic_0166:
+ text: edam:topic_0166
+ description: Structural features or common 3D motifs within protein structures,
+ including the surface of a protein structure, such as biological interfaces
+ with other molecules.
+ meaning: edam:topic_0166
+ title: Protein structural motifs and surfaces
+ edam:topic_0176:
+ text: edam:topic_0176
+ description: The study and simulation of molecular (typically protein) conformation
+ using a computational model of physical forces and computer simulation.
+ meaning: edam:topic_0176
+ title: Molecular dynamics
+ edam:topic_0194:
+ text: edam:topic_0194
+ description: The integrated study of evolutionary relationships and whole
+ genome data, for example, in the analysis of species trees, horizontal gene
+ transfer and evolutionary reconstruction.
+ meaning: edam:topic_0194
+ title: Phylogenomics
+ edam:topic_0196:
+ text: edam:topic_0196
+ description: The assembly of fragments of a DNA sequence to reconstruct the
+ original sequence.
+ meaning: edam:topic_0196
+ title: Sequence assembly
+ edam:topic_0199:
+ text: edam:topic_0199
+ description: Stable, naturally occurring mutations in a nucleotide sequence
+ including alleles, naturally occurring mutations such as single base nucleotide
+ substitutions, deletions and insertions, RFLPs and other polymorphisms.
+ meaning: edam:topic_0199
+ title: Genetic variation
+ edam:topic_0202:
+ text: edam:topic_0202
+ description: The study of drugs and their effects or responses in living systems.
+ meaning: edam:topic_0202
+ title: Pharmacology
+ edam:topic_0203:
+ text: edam:topic_0203
+ description: The analysis of levels and patterns of synthesis of gene products
+ (proteins and functional RNA) including interpretation in functional terms
+ of gene expression data.
+ meaning: edam:topic_0203
+ title: Gene expression
+ edam:topic_0204:
+ text: edam:topic_0204
+ description: The regulation of gene expression.
+ meaning: edam:topic_0204
+ title: Gene regulation
+ edam:topic_0208:
+ text: edam:topic_0208
+ description: The influence of genotype on drug response, for example by correlating
+ gene expression or single-nucleotide polymorphisms with drug efficacy or
+ toxicity.
+ meaning: edam:topic_0208
+ title: Pharmacogenomics
+ edam:topic_0209:
+ text: edam:topic_0209
+ description: The design and chemical synthesis of bioactive molecules, for
+ example drugs or potential drug compounds, for medicinal purposes.
+ meaning: edam:topic_0209
+ title: Medicinal chemistry
+ edam:topic_0218:
+ text: edam:topic_0218
+ description: The processing and analysis of natural language, such as scientific
+ literature in English, in order to extract data and information, or to enable
+ human-computer interaction.
+ meaning: edam:topic_0218
+ title: Natural language processing
+ edam:topic_0219:
+ text: edam:topic_0219
+ description: Data curation and archival includes the preservation of data
+ in a repository, archive, or a deposition database; and curation of data
+ and metadata, database accessions, annotation, and data provenance.
+ meaning: edam:topic_0219
+ title: Data curation and archival
+ edam:topic_0593:
+ text: edam:topic_0593
+ description: An analytical technique that exploits the magenetic properties
+ of certain atomic nuclei to provide information on the structure, dynamics,
+ reaction state and chemical environment of molecules.
+ meaning: edam:topic_0593
+ title: NMR
+ edam:topic_0601:
+ text: edam:topic_0601
+ description: Protein chemical modifications, e.g. post-translational modifications.
+ meaning: edam:topic_0601
+ title: Protein modifications
+ edam:topic_0602:
+ text: edam:topic_0602
+ description: Molecular interactions, biological pathways, networks and other
+ models.
+ meaning: edam:topic_0602
+ title: Molecular interactions, pathways and networks
+ edam:topic_0605:
+ text: edam:topic_0605
+ description: The study and practice of information processing and use of computer
+ information systems.
+ meaning: edam:topic_0605
+ title: Informatics
+ edam:topic_0607:
+ text: edam:topic_0607
+ description: Laboratory management and resources, for example, catalogues
+ of biological resources for use in the lab including cell lines, viruses,
+ plasmids, phages, DNA probes and primers and so on.
+ meaning: edam:topic_0607
+ title: Laboratory information management
+ edam:topic_0610:
+ text: edam:topic_0610
+ description: The ecological and environmental sciences and especially the
+ application of information technology (ecoinformatics).
+ meaning: edam:topic_0610
+ title: Ecology
+ edam:topic_0611:
+ text: edam:topic_0611
+ description: The study of matter by studying the interference pattern from
+ firing electrons at a sample, to analyse structures at resolutions higher
+ than can be achieved using light.
+ meaning: edam:topic_0611
+ title: Electron microscopy
+ edam:topic_0621:
+ text: edam:topic_0621
+ description: A specific organism, or group of organisms, used to study a particular
+ aspect of biology.
+ meaning: edam:topic_0621
+ title: Model organisms
+ edam:topic_0622:
+ text: edam:topic_0622
+ description: Whole genomes of one or more organisms, or genomes in general,
+ such as meta-information on genomes, genome projects, gene names etc.
+ meaning: edam:topic_0622
+ title: Genomics
+ edam:topic_0623:
+ text: edam:topic_0623
+ description: Particular gene(s), gene family or other gene group or system
+ and their encoded proteins.Primarily the classification of proteins (from
+ sequence or structural data) into clusters, groups, families etc., curation
+ of a particular protein or protein family, or any other proteins that have
+ been classified as members of a common group.
+ meaning: edam:topic_0623
+ title: Gene and protein families
+ edam:topic_0625:
+ text: edam:topic_0625
+ description: The study of genetic constitution of a living entity, such as
+ an individual, and organism, a cell and so on, typically with respect to
+ a particular observable phenotypic traits, or resources concerning such
+ traits, which might be an aspect of biochemistry, physiology, morphology,
+ anatomy, development and so on.
+ meaning: edam:topic_0625
+ title: Genotype and phenotype
+ edam:topic_0632:
+ text: edam:topic_0632
+ description: Molecular probes (e.g. a peptide probe or DNA microarray probe)
+ or PCR primers and hybridisation oligos in a nucleic acid sequence.
+ meaning: edam:topic_0632
+ title: Probes and primers
+ edam:topic_0634:
+ text: edam:topic_0634
+ description: Diseases, including diseases in general and the genes, gene variations
+ and proteins involved in one or more specific diseases.
+ meaning: edam:topic_0634
+ title: Pathology
+ edam:topic_0637:
+ text: edam:topic_0637
+ description: Organism classification, identification and naming.
+ meaning: edam:topic_0637
+ title: Taxonomy
+ edam:topic_0654:
+ text: edam:topic_0654
+ description: DNA sequences and structure, including processes such as methylation
+ and replication.
+ meaning: edam:topic_0654
+ title: DNA
+ edam:topic_0659:
+ text: edam:topic_0659
+ description: Non-coding or functional RNA sequences, including regulatory
+ RNA sequences, ribosomal RNA (rRNA) and transfer RNA (tRNA).
+ meaning: edam:topic_0659
+ title: Functional, regulatory and non-coding RNA
+ edam:topic_0736:
+ text: edam:topic_0736
+ description: Protein tertiary structural domains and folds in a protein or
+ polypeptide chain.
+ meaning: edam:topic_0736
+ title: Protein folds and structural domains
+ edam:topic_0749:
+ text: edam:topic_0749
+ description: Proteins that bind to DNA and control transcription of DNA to
+ mRNA (transcription factors) and also transcriptional regulatory sites,
+ elements and regions (such as promoters, enhancers, silencers and boundary
+ elements / insulators) in nucleotide sequences.
+ meaning: edam:topic_0749
+ title: Transcription factors and regulatory sites
+ edam:topic_0769:
+ text: edam:topic_0769
+ description: Biological or biomedical analytical workflows or pipelines.
+ meaning: edam:topic_0769
+ title: Workflows
+ edam:topic_0780:
+ text: edam:topic_0780
+ description: Plants, e.g. information on a specific plant genome including
+ molecular sequences, genes and annotation.
+ meaning: edam:topic_0780
+ title: Plant biology
+ edam:topic_0781:
+ text: edam:topic_0781
+ description: Study of viruses, e.g. sequence and structural data, interactions
+ of viral proteins, or a viral genome including molecular sequences, genes
+ and annotation.
+ meaning: edam:topic_0781
+ title: Virology
+ edam:topic_0797:
+ text: edam:topic_0797
+ description: The study (typically comparison) of the sequence, structure or
+ function of multiple genomes.
+ meaning: edam:topic_0797
+ title: Comparative genomics
+ edam:topic_0798:
+ text: edam:topic_0798
+ description: Mobile genetic elements, such as transposons, Plasmids, Bacteriophage
+ elements and Group II introns.
+ meaning: edam:topic_0798
+ title: Mobile genetic elements
+ edam:topic_0804:
+ text: edam:topic_0804
+ description: The application of information technology to immunology such
+ as immunological processes, immunological genes, proteins and peptide ligands,
+ antigens and so on.
+ meaning: edam:topic_0804
+ title: Immunology
+ edam:topic_0820:
+ text: edam:topic_0820
+ description: Lipoproteins (protein-lipid assemblies), and proteins or region
+ of a protein that spans or are associated with a membrane.
+ meaning: edam:topic_0820
+ title: Membrane and lipoproteins
+ edam:topic_0821:
+ text: edam:topic_0821
+ description: Proteins that catalyze chemical reaction, the kinetics of enzyme-catalysed
+ reactions, enzyme nomenclature etc.
+ meaning: edam:topic_0821
+ title: Enzymes
+ edam:topic_1317:
+ text: edam:topic_1317
+ description: The molecular structure of biological molecules, particularly
+ macromolecules such as proteins and nucleic acids.
+ meaning: edam:topic_1317
+ title: Structural biology
+ edam:topic_1775:
+ text: edam:topic_1775
+ description: The study of gene and protein function including the prediction
+ of functional properties of a protein.
+ meaning: edam:topic_1775
+ title: Function analysis
+ edam:topic_2229:
+ text: edam:topic_2229
+ description: Cells, such as key genes and proteins involved in the cell cycle.
+ meaning: edam:topic_2229
+ title: Cell biology
+ edam:topic_2258:
+ text: edam:topic_2258
+ description: The application of information technology to chemistry in biological
+ research environment.
+ meaning: edam:topic_2258
+ title: Cheminformatics
+ edam:topic_2259:
+ text: edam:topic_2259
+ description: The holistic modelling and analysis of complex biological systems
+ and the interactions therein.
+ meaning: edam:topic_2259
+ title: Systems biology
+ edam:topic_2269:
+ text: edam:topic_2269
+ description: The application of statistical methods to biological problems.
+ meaning: edam:topic_2269
+ title: Statistics and probability
+ edam:topic_2275:
+ text: edam:topic_2275
+ description: The construction, analysis, evaluation, refinement etc. of models
+ of a molecules properties or behaviour, including the modelling the structure
+ of proteins in complex with small molecules or other macromolecules (docking).
+ meaning: edam:topic_2275
+ title: Molecular modelling
+ edam:topic_2533:
+ text: edam:topic_2533
+ description: DNA mutation.
+ meaning: edam:topic_2533
+ title: DNA mutation
+ edam:topic_2640:
+ text: edam:topic_2640
+ description: The study of cancer, for example, genes and proteins implicated
+ in cancer.
+ meaning: edam:topic_2640
+ title: Oncology
+ edam:topic_2814:
+ text: edam:topic_2814
+ description: Protein secondary or tertiary structural data and/or associated
+ annotation.
+ meaning: edam:topic_2814
+ title: Protein structure analysis
+ edam:topic_2815:
+ text: edam:topic_2815
+ description: The study of human beings in general, including the human genome
+ and proteome.
+ meaning: edam:topic_2815
+ title: Human biology
+ edam:topic_2828:
+ text: edam:topic_2828
+ description: The study of matter and their structure by means of the diffraction
+ of X-rays, typically the diffraction pattern caused by the regularly spaced
+ atoms of a crystalline sample.
+ meaning: edam:topic_2828
+ title: X-ray diffraction
+ edam:topic_2830:
+ text: edam:topic_2830
+ description: Immunity-related proteins and their ligands.
+ meaning: edam:topic_2830
+ title: Immunoproteins and antigens
+ edam:topic_2840:
+ text: edam:topic_2840
+ description: Toxins and the adverse effects of these chemical substances on
+ living organisms.
+ meaning: edam:topic_2840
+ title: Toxicology
+ edam:topic_2885:
+ text: edam:topic_2885
+ description: DNA polymorphism.
+ meaning: edam:topic_2885
+ title: DNA polymorphism
+ edam:topic_3047:
+ text: edam:topic_3047
+ description: The molecular basis of biological activity, particularly the
+ macromolecules (e.g. proteins and nucleic acids) that are essential to life.
+ meaning: edam:topic_3047
+ title: Molecular biology
+ edam:topic_3050:
+ text: edam:topic_3050
+ description: The degree of variation of life forms within a given ecosystem,
+ biome or an entire planet.
+ meaning: edam:topic_3050
+ title: Biodiversity
+ edam:topic_3053:
+ text: edam:topic_3053
+ description: The study of genes, genetic variation and heredity in living
+ organisms.
+ meaning: edam:topic_3053
+ title: Genetics
+ edam:topic_3055:
+ text: edam:topic_3055
+ description: The genes and genetic mechanisms such as Mendelian inheritance
+ that underly continuous phenotypic traits (such as height or weight).
+ meaning: edam:topic_3055
+ title: Quantitative genetics
+ edam:topic_3056:
+ text: edam:topic_3056
+ description: The distribution of allele frequencies in a population of organisms
+ and its change subject to evolutionary processes including natural selection,
+ genetic drift, mutation and gene flow.
+ meaning: edam:topic_3056
+ title: Population genetics
+ edam:topic_3063:
+ text: edam:topic_3063
+ description: The application of information technology to health, disease
+ and biomedicine.
+ meaning: edam:topic_3063
+ title: Medical informatics
+ edam:topic_3064:
+ text: edam:topic_3064
+ description: How organisms grow and develop.
+ meaning: edam:topic_3064
+ title: Developmental biology
+ edam:topic_3065:
+ text: edam:topic_3065
+ description: The development of organisms between the one-cell stage (typically
+ the zygote) and the end of the embryonic stage.
+ meaning: edam:topic_3065
+ title: Embryology
+ edam:topic_3067:
+ text: edam:topic_3067
+ description: The form and function of the structures of living organisms.
+ meaning: edam:topic_3067
+ title: Anatomy
+ edam:topic_3068:
+ text: edam:topic_3068
+ description: The scientific literature, language processing, reference information,
+ and documentation.
+ meaning: edam:topic_3068
+ title: Literature and language
+ edam:topic_3070:
+ text: edam:topic_3070
+ description: The study of life and living organisms, including their morphology,
+ biochemistry, physiology, development, evolution, and so on.
+ meaning: edam:topic_3070
+ title: Biology
+ edam:topic_3071:
+ text: edam:topic_3071
+ description: Data management comprises the practices and principles of taking
+ care of data, other than analysing them. This includes for example taking
+ care of the associated metadata, data formats, storage, preservation/archiving,
+ access, and legal aspects related to using and sharing data.
+ meaning: edam:topic_3071
+ title: Data management
+ edam:topic_3077:
+ text: edam:topic_3077
+ description: The acquisition of data, typically measurements of physical systems
+ using any type of sampling system, or by another other means.
+ meaning: edam:topic_3077
+ title: Data acquisition
+ edam:topic_3120:
+ text: edam:topic_3120
+ description: Protein sequence variants produced e.g. from alternative splicing,
+ alternative promoter usage, alternative initiation and ribosomal frameshifting.
+ meaning: edam:topic_3120
+ title: Protein variants
+ edam:topic_3125:
+ text: edam:topic_3125
+ description: Nucleic acids binding to some other molecule.
+ meaning: edam:topic_3125
+ title: DNA binding sites
+ edam:topic_3127:
+ text: edam:topic_3127
+ description: DNA replication or recombination.
+ meaning: edam:topic_3127
+ title: DNA replication and recombination
+ edam:topic_3168:
+ text: edam:topic_3168
+ description: The determination of complete (typically nucleotide) sequences,
+ including those of genomes (full genome sequencing, de novo sequencing and
+ resequencing), amplicons and transcriptomes.
+ meaning: edam:topic_3168
+ title: Sequencing
+ edam:topic_3169:
+ text: edam:topic_3169
+ description: The analysis of protein-DNA interactions where chromatin immunoprecipitation
+ (ChIP) is used in combination with massively parallel DNA sequencing to
+ identify the binding sites of DNA-associated proteins.
+ meaning: edam:topic_3169
+ title: ChIP-seq
+ edam:topic_3170:
+ text: edam:topic_3170
+ description: A topic concerning high-throughput sequencing of cDNA to measure
+ the RNA content (transcriptome) of a sample, for example, to investigate
+ how different alleles of a gene are expressed, detect post-transcriptional
+ mutations or identify gene fusions.
+ meaning: edam:topic_3170
+ title: RNA-Seq
+ edam:topic_3172:
+ text: edam:topic_3172
+ description: The systematic study of metabolites, the chemical processes they
+ are involved, and the chemical fingerprints of specific cellular processes
+ in a whole cell, tissue, organ or organism.
+ meaning: edam:topic_3172
+ title: Metabolomics
+ edam:topic_3173:
+ text: edam:topic_3173
+ description: The study of the epigenetic modifications of a whole cell, tissue,
+ organism etc.
+ meaning: edam:topic_3173
+ title: Epigenomics
+ edam:topic_3174:
+ text: edam:topic_3174
+ description: The study of genetic material recovered from environmental samples,
+ and associated environmental data.
+ meaning: edam:topic_3174
+ title: Metagenomics
+ edam:topic_3175:
+ text: edam:topic_3175
+ description: Variation in chromosome structure including microscopic and submicroscopic
+ types of variation such as deletions, duplications, copy-number variants,
+ insertions, inversions and translocations.
+ meaning: edam:topic_3175
+ title: Structural variation
+ edam:topic_3176:
+ text: edam:topic_3176
+ description: DNA-histone complexes (chromatin), organisation of chromatin
+ into nucleosomes and packaging into higher-order structures.
+ meaning: edam:topic_3176
+ title: DNA packaging
+ edam:topic_3179:
+ text: edam:topic_3179
+ description: Experimental techniques that combine chromatin immunoprecipitation
+ ('ChIP') with microarray ('chip'). ChIP-on-chip is used for high-throughput
+ study protein-DNA interactions.
+ meaning: edam:topic_3179
+ title: ChIP-on-chip
+ edam:topic_3277:
+ text: edam:topic_3277
+ description: Biological samples and specimens.
+ meaning: edam:topic_3277
+ title: Sample collections
+ edam:topic_3292:
+ text: edam:topic_3292
+ description: Chemical substances and physico-chemical processes and that occur
+ within living organisms.
+ meaning: edam:topic_3292
+ title: Biochemistry
+ edam:topic_3293:
+ text: edam:topic_3293
+ description: The study of evolutionary relationships amongst organisms from
+ analysis of genetic information (typically gene or protein sequences).
+ meaning: edam:topic_3293
+ title: Phylogenetics
+ edam:topic_3295:
+ text: edam:topic_3295
+ description: Topic concerning the study of heritable changes, for example
+ in gene expression or phenotype, caused by mechanisms other than changes
+ in the DNA sequence.
+ meaning: edam:topic_3295
+ title: Epigenetics
+ edam:topic_3297:
+ text: edam:topic_3297
+ description: The exploitation of biological process, structure and function
+ for industrial purposes, for example the genetic manipulation of microorganisms
+ for the antibody production.
+ meaning: edam:topic_3297
+ title: Biotechnology
+ edam:topic_3298:
+ text: edam:topic_3298
+ description: Phenomes, or the study of the change in phenotype (the physical
+ and biochemical traits of organisms) in response to genetic and environmental
+ factors.
+ meaning: edam:topic_3298
+ title: Phenomics
+ edam:topic_3299:
+ text: edam:topic_3299
+ description: The evolutionary processes, from the genetic to environmental
+ scale, that produced life in all its diversity.
+ meaning: edam:topic_3299
+ title: Evolutionary biology
+ edam:topic_3300:
+ text: edam:topic_3300
+ description: The functions of living organisms and their constituent parts.
+ meaning: edam:topic_3300
+ title: Physiology
+ edam:topic_3301:
+ text: edam:topic_3301
+ description: The biology of microorganisms.
+ meaning: edam:topic_3301
+ title: Microbiology
+ edam:topic_3302:
+ text: edam:topic_3302
+ description: The biology of parasites.
+ meaning: edam:topic_3302
+ title: Parasitology
+ edam:topic_3303:
+ text: edam:topic_3303
+ description: Research in support of healing by diagnosis, treatment, and prevention
+ of disease.
+ meaning: edam:topic_3303
+ title: Medicine
+ edam:topic_3304:
+ text: edam:topic_3304
+ description: The study of the nervous system and brain; its anatomy, physiology
+ and function.
+ meaning: edam:topic_3304
+ title: Neurobiology
+ edam:topic_3305:
+ text: edam:topic_3305
+ description: Topic concerning the the patterns, cause, and effect of disease
+ within populations.
+ meaning: edam:topic_3305
+ title: Public health and epidemiology
+ edam:topic_3306:
+ text: edam:topic_3306
+ description: The use of physics to study biological system.
+ meaning: edam:topic_3306
+ title: Biophysics
+ edam:topic_3307:
+ text: edam:topic_3307
+ description: The development and application of theory, analytical methods,
+ mathematical models and computational simulation of biological systems.
+ meaning: edam:topic_3307
+ title: Computational biology
+ edam:topic_3308:
+ text: edam:topic_3308
+ description: The analysis of transcriptomes, or a set of all the RNA molecules
+ in a specific cell, tissue etc.
+ meaning: edam:topic_3308
+ title: Transcriptomics
+ edam:topic_3314:
+ text: edam:topic_3314
+ description: The composition and properties of matter, reactions, and the
+ use of reactions to create new substances.
+ meaning: edam:topic_3314
+ title: Chemistry
+ edam:topic_3315:
+ text: edam:topic_3315
+ description: The study of numbers (quantity) and other topics including structure,
+ space, and change.
+ meaning: edam:topic_3315
+ title: Mathematics
+ edam:topic_3316:
+ text: edam:topic_3316
+ description: The theory and practical use of computer systems.
+ meaning: edam:topic_3316
+ title: Computer science
+ edam:topic_3318:
+ text: edam:topic_3318
+ description: The study of matter, space and time, and related concepts such
+ as energy and force.
+ meaning: edam:topic_3318
+ title: Physics
+ edam:topic_3320:
+ text: edam:topic_3320
+ description: RNA splicing; post-transcription RNA modification involving the
+ removal of introns and joining of exons.
+ meaning: edam:topic_3320
+ title: RNA splicing
+ edam:topic_3321:
+ text: edam:topic_3321
+ description: The structure and function of genes at a molecular level.
+ meaning: edam:topic_3321
+ title: Molecular genetics
+ edam:topic_3322:
+ text: edam:topic_3322
+ description: The study of respiratory system.
+ meaning: edam:topic_3322
+ title: Respiratory medicine
+ edam:topic_3324:
+ text: edam:topic_3324
+ description: The branch of medicine that deals with the prevention, diagnosis
+ and management of transmissible disease with clinically evident illness
+ resulting from infection with pathogenic biological agents (viruses, bacteria,
+ fungi, protozoa, parasites and prions).
+ meaning: edam:topic_3324
+ title: Infectious disease
+ edam:topic_3325:
+ text: edam:topic_3325
+ description: The study of rare diseases.
+ meaning: edam:topic_3325
+ title: Rare diseases
+ edam:topic_3332:
+ text: edam:topic_3332
+ description: Topic concerning the development and application of theory, analytical
+ methods, mathematical models and computational simulation of chemical systems.
+ meaning: edam:topic_3332
+ title: Computational chemistry
+ edam:topic_3334:
+ text: edam:topic_3334
+ description: The branch of medicine that deals with the anatomy, functions
+ and disorders of the nervous system.
+ meaning: edam:topic_3334
+ title: Neurology
+ edam:topic_3335:
+ text: edam:topic_3335
+ description: The diseases and abnormalities of the heart and circulatory system.
+ meaning: edam:topic_3335
+ title: Cardiology
+ edam:topic_3336:
+ text: edam:topic_3336
+ description: The discovery and design of drugs or potential drug compounds.
+ meaning: edam:topic_3336
+ title: Drug discovery
+ edam:topic_3337:
+ text: edam:topic_3337
+ description: Repositories of biological samples, typically human, for basic
+ biological and clinical research.
+ meaning: edam:topic_3337
+ title: Biobank
+ edam:topic_3338:
+ text: edam:topic_3338
+ description: Laboratory study of mice, for example, phenotyping, and mutagenesis
+ of mouse cell lines.
+ meaning: edam:topic_3338
+ title: Mouse clinic
+ edam:topic_3339:
+ text: edam:topic_3339
+ description: Collections of microbial cells including bacteria, yeasts and
+ moulds.
+ meaning: edam:topic_3339
+ title: Microbial collection
+ edam:topic_3340:
+ text: edam:topic_3340
+ description: Collections of cells grown under laboratory conditions, specifically,
+ cells from multi-cellular eukaryotes and especially animal cells.
+ meaning: edam:topic_3340
+ title: Cell culture collection
+ edam:topic_3341:
+ text: edam:topic_3341
+ description: Collections of DNA, including both collections of cloned molecules,
+ and populations of micro-organisms that store and propagate cloned DNA.
+ meaning: edam:topic_3341
+ title: Clone library
+ edam:topic_3342:
+ text: edam:topic_3342
+ description: '''translating'' the output of basic and biomedical research
+ into better diagnostic tools, medicines, medical procedures, policies and
+ advice.'
+ meaning: edam:topic_3342
+ title: Translational medicine
+ edam:topic_3343:
+ text: edam:topic_3343
+ description: Collections of chemicals, typically for use in high-throughput
+ screening experiments.
+ meaning: edam:topic_3343
+ title: Compound libraries and screening
+ edam:topic_3344:
+ text: edam:topic_3344
+ description: Topic concerning biological science that is (typically) performed
+ in the context of medicine.
+ meaning: edam:topic_3344
+ title: Biomedical science
+ edam:topic_3345:
+ text: edam:topic_3345
+ description: Topic concerning the identity of biological entities, or reports
+ on such entities, and the mapping of entities and records in different databases.
+ meaning: edam:topic_3345
+ title: Data identity and mapping
+ edam:topic_3360:
+ text: edam:topic_3360
+ description: Objective indicators of biological state often used to assess
+ health, and determinate treatment.
+ meaning: edam:topic_3360
+ title: Biomarkers
+ edam:topic_3365:
+ text: edam:topic_3365
+ description: The development of policies, models and standards that cover
+ data acquisition, storage and integration, such that it can be put to use,
+ typically through a process of systematically applying statistical and /
+ or logical techniques to describe, illustrate, summarise or evaluate data.
+ meaning: edam:topic_3365
+ title: Data architecture, analysis and design
+ edam:topic_3366:
+ text: edam:topic_3366
+ description: The combination and integration of data from different sources,
+ for example into a central repository or warehouse, to provide users with
+ a unified view of these data.
+ meaning: edam:topic_3366
+ title: Data integration and warehousing
+ edam:topic_3368:
+ text: edam:topic_3368
+ description: Any matter, surface or construct that interacts with a biological
+ system.
+ meaning: edam:topic_3368
+ title: Biomaterials
+ edam:topic_3369:
+ text: edam:topic_3369
+ description: The use of synthetic chemistry to study and manipulate biological
+ systems.
+ meaning: edam:topic_3369
+ title: Chemical biology
+ edam:topic_3370:
+ text: edam:topic_3370
+ description: The study of the separation, identification, and quantification
+ of the chemical components of natural and artificial materials.
+ meaning: edam:topic_3370
+ title: Analytical chemistry
+ edam:topic_3371:
+ text: edam:topic_3371
+ description: The use of chemistry to create new compounds.
+ meaning: edam:topic_3371
+ title: Synthetic chemistry
+ edam:topic_3372:
+ text: edam:topic_3372
+ description: The process that leads from an original formulation of a computing
+ problem to executable programs.
+ meaning: edam:topic_3372
+ title: Software engineering
+ edam:topic_3373:
+ text: edam:topic_3373
+ description: The process of bringing a new drug to market once a lead compounds
+ has been identified through drug discovery.
+ meaning: edam:topic_3373
+ title: Drug development
+ edam:topic_3374:
+ text: edam:topic_3374
+ description: The process of formulating and administering a pharmaceutical
+ compound to achieve a therapeutic effect.
+ meaning: edam:topic_3374
+ title: Biotherapeutics
+ edam:topic_3375:
+ text: edam:topic_3375
+ description: The study of how a drug interacts with the body.
+ meaning: edam:topic_3375
+ title: Drug metabolism
+ edam:topic_3376:
+ text: edam:topic_3376
+ description: The discovery, development and approval of medicines.
+ meaning: edam:topic_3376
+ title: Medicines research and development
+ edam:topic_3377:
+ text: edam:topic_3377
+ description: The safety (or lack) of drugs and other medical interventions.
+ meaning: edam:topic_3377
+ title: Safety sciences
+ edam:topic_3378:
+ text: edam:topic_3378
+ description: The detection, assessment, understanding and prevention of adverse
+ effects of medicines.
+ meaning: edam:topic_3378
+ title: Pharmacovigilance
+ edam:topic_3379:
+ text: edam:topic_3379
+ description: The testing of new medicines, vaccines or procedures on animals
+ (preclinical) and humans (clinical) prior to their approval by regulatory
+ authorities.
+ meaning: edam:topic_3379
+ title: Preclinical and clinical studies
+ edam:topic_3382:
+ text: edam:topic_3382
+ description: The visual representation of an object.
+ meaning: edam:topic_3382
+ title: Imaging
+ edam:topic_3383:
+ text: edam:topic_3383
+ description: The use of imaging techniques to understand biology.
+ meaning: edam:topic_3383
+ title: Bioimaging
+ edam:topic_3384:
+ text: edam:topic_3384
+ description: The use of imaging techniques for clinical purposes for medical
+ research.
+ meaning: edam:topic_3384
+ title: Medical imaging
+ edam:topic_3385:
+ text: edam:topic_3385
+ description: The use of optical instruments to magnify the image of an object.
+ meaning: edam:topic_3385
+ title: Light microscopy
+ edam:topic_3386:
+ text: edam:topic_3386
+ description: The use of animals and alternatives in experimental research.
+ meaning: edam:topic_3386
+ title: Laboratory animal science
+ edam:topic_3387:
+ text: edam:topic_3387
+ description: The study of organisms in the ocean or brackish waters.
+ meaning: edam:topic_3387
+ title: Marine biology
+ edam:topic_3388:
+ text: edam:topic_3388
+ description: The identification of molecular and genetic causes of disease
+ and the development of interventions to correct them.
+ meaning: edam:topic_3388
+ title: Molecular medicine
+ edam:topic_3390:
+ text: edam:topic_3390
+ description: The study of the effects of food components on the metabolism,
+ health, performance and disease resistance of humans and animals. It also
+ includes the study of human behaviours related to food choices.
+ meaning: edam:topic_3390
+ title: Nutritional science
+ edam:topic_3391:
+ text: edam:topic_3391
+ description: The collective characterisation and quantification of pools of
+ biological molecules that translate into the structure, function, and dynamics
+ of an organism or organisms.
+ meaning: edam:topic_3391
+ title: Omics
+ edam:topic_3393:
+ text: edam:topic_3393
+ description: The processes that need to be in place to ensure the quality
+ of products for human or animal use.
+ meaning: edam:topic_3393
+ title: Quality affairs
+ edam:topic_3394:
+ text: edam:topic_3394
+ description: The protection of public health by controlling the safety and
+ efficacy of products in areas including pharmaceuticals, veterinary medicine,
+ medical devices, pesticides, agrochemicals, cosmetics, and complementary
+ medicines.
+ meaning: edam:topic_3394
+ title: Regulatory affairs
+ edam:topic_3395:
+ text: edam:topic_3395
+ description: Biomedical approaches to clinical interventions that involve
+ the use of stem cells.
+ meaning: edam:topic_3395
+ title: Regenerative medicine
+ edam:topic_3396:
+ text: edam:topic_3396
+ description: An interdisciplinary field of study that looks at the dynamic
+ systems of the human body as part of an integrted whole, incorporating biochemical,
+ physiological, and environmental interactions that sustain life.
+ meaning: edam:topic_3396
+ title: Systems medicine
+ edam:topic_3397:
+ text: edam:topic_3397
+ description: Topic concerning the branch of medicine that deals with the prevention,
+ diagnosis, and treatment of disease, disorder and injury in animals.
+ meaning: edam:topic_3397
+ title: Veterinary medicine
+ edam:topic_3398:
+ text: edam:topic_3398
+ description: The application of biological concepts and methods to the analytical
+ and synthetic methodologies of engineering.
+ meaning: edam:topic_3398
+ title: Bioengineering
+ edam:topic_3399:
+ text: edam:topic_3399
+ description: The branch of medicine dealing with the diagnosis, treatment
+ and prevention of disease in older people, and the problems specific to
+ aging.
+ meaning: edam:topic_3399
+ title: Geriatric medicine
+ edam:topic_3400:
+ text: edam:topic_3400
+ description: Health issues related to the immune system and their prevention,
+ diagnosis and management.
+ meaning: edam:topic_3400
+ title: Allergy, clinical immunology and immunotherapeutics
+ edam:topic_3401:
+ text: edam:topic_3401
+ description: The prevention of pain and the evaluation, treatment and rehabilitation
+ of persons in pain.
+ meaning: edam:topic_3401
+ title: Pain medicine
+ edam:topic_3402:
+ text: edam:topic_3402
+ description: Anaesthesia and anaesthetics.
+ meaning: edam:topic_3402
+ title: Anaesthesiology
+ edam:topic_3403:
+ text: edam:topic_3403
+ description: The multidisciplinary that cares for patients with acute, life-threatening
+ illness or injury.
+ meaning: edam:topic_3403
+ title: Critical care medicine
+ edam:topic_3404:
+ text: edam:topic_3404
+ description: The branch of medicine that deals with prevention, diagnosis
+ and treatment of disorders of the skin, scalp, hair and nails.
+ meaning: edam:topic_3404
+ title: Dermatology
+ edam:topic_3405:
+ text: edam:topic_3405
+ description: The study, diagnosis, prevention and treatments of disorders
+ of the oral cavity, maxillofacial area and adjacent structures.
+ meaning: edam:topic_3405
+ title: Dentistry
+ edam:topic_3406:
+ text: edam:topic_3406
+ description: The branch of medicine that deals with the prevention, diagnosis,
+ and treatment of disorders of the ear, nose and throat.
+ meaning: edam:topic_3406
+ title: Ear, nose and throat medicine
+ edam:topic_3407:
+ text: edam:topic_3407
+ description: The branch of medicine dealing with diseases of endocrine organs,
+ hormone systems, their target organs, and disorders of the pathways of glucose
+ and lipid metabolism.
+ meaning: edam:topic_3407
+ title: Endocrinology and metabolism
+ edam:topic_3408:
+ text: edam:topic_3408
+ description: The branch of medicine that deals with the blood, blood-forming
+ organs and blood diseases.
+ meaning: edam:topic_3408
+ title: Haematology
+ edam:topic_3409:
+ text: edam:topic_3409
+ description: The branch of medicine that deals with disorders of the oesophagus,
+ stomach, duodenum, jejenum, ileum, large intestine, sigmoid colon and rectum.
+ meaning: edam:topic_3409
+ title: Gastroenterology
+ edam:topic_3410:
+ text: edam:topic_3410
+ description: The study of the biological and physiological differences between
+ males and females and how they effect differences in disease presentation
+ and management.
+ meaning: edam:topic_3410
+ title: Gender medicine
+ edam:topic_3411:
+ text: edam:topic_3411
+ description: The branch of medicine that deals with the health of the female
+ reproductive system, pregnancy and birth.
+ meaning: edam:topic_3411
+ title: Gynaecology and obstetrics
+ edam:topic_3412:
+ text: edam:topic_3412
+ description: The branch of medicine that deals with the liver, gallbladder,
+ bile ducts and bile.
+ meaning: edam:topic_3412
+ title: Hepatic and biliary medicine
+ edam:topic_3414:
+ text: edam:topic_3414
+ description: The branch of medicine that treats body wounds or shock produced
+ by sudden physical injury, as from violence or accident.
+ meaning: edam:topic_3414
+ title: Trauma medicine
+ edam:topic_3415:
+ text: edam:topic_3415
+ description: The branch of medicine that deals with the diagnosis, management
+ and prevention of poisoning and other adverse health effects caused by medications,
+ occupational and environmental toxins, and biological agents.
+ meaning: edam:topic_3415
+ title: Medical toxicology
+ edam:topic_3416:
+ text: edam:topic_3416
+ description: The branch of medicine that deals with the prevention, diagnosis,
+ and treatment of disorders of the muscle, bone and connective tissue. It
+ incorporates aspects of orthopaedics, rheumatology, rehabilitation medicine
+ and pain medicine.
+ meaning: edam:topic_3416
+ title: Musculoskeletal medicine
+ edam:topic_3417:
+ text: edam:topic_3417
+ description: The branch of medicine that deals with disorders of the eye,
+ including eyelid, optic nerve/visual pathways and occular muscles.
+ meaning: edam:topic_3417
+ title: Ophthalmology
+ edam:topic_3418:
+ text: edam:topic_3418
+ description: The branch of medicine that deals with the medical care of infants,
+ children and adolescents.
+ meaning: edam:topic_3418
+ title: Paediatrics
+ edam:topic_3419:
+ text: edam:topic_3419
+ description: The branch of medicine that deals with the management of mental
+ illness, emotional disturbance and abnormal behaviour.
+ meaning: edam:topic_3419
+ title: Psychiatry
+ edam:topic_3420:
+ text: edam:topic_3420
+ description: The health of the reproductive processes, functions and systems
+ at all stages of life.
+ meaning: edam:topic_3420
+ title: Reproductive health
+ edam:topic_3421:
+ text: edam:topic_3421
+ description: The use of operative, manual and instrumental techniques on a
+ patient to investigate and/or treat a pathological condition or help improve
+ bodily function or appearance.
+ meaning: edam:topic_3421
+ title: Surgery
+ edam:topic_3422:
+ text: edam:topic_3422
+ description: The branches of medicine and physiology focussing on the function
+ and disorders of the urinary system in males and females, the reproductive
+ system in males, and the kidney.
+ meaning: edam:topic_3422
+ title: Urology and nephrology
+ edam:topic_3423:
+ text: edam:topic_3423
+ description: Medical therapies that fall beyond the scope of conventional
+ medicine but may be used alongside it in the treatment of disease and ill
+ health.
+ meaning: edam:topic_3423
+ title: Complementary medicine
+ edam:topic_3444:
+ text: edam:topic_3444
+ description: Techniques that uses magnetic fields and radiowaves to form images,
+ typically to investigate the anatomy and physiology of the human body.
+ meaning: edam:topic_3444
+ title: MRI
+ edam:topic_3448:
+ text: edam:topic_3448
+ description: The study of matter by studying the diffraction pattern from
+ firing neutrons at a sample, typically to determine atomic and/or magnetic
+ structure.
+ meaning: edam:topic_3448
+ title: Neutron diffraction
+ edam:topic_3452:
+ text: edam:topic_3452
+ description: Imaging in sections (sectioning), through the use of a wave-generating
+ device (tomograph) that generates an image (a tomogram).
+ meaning: edam:topic_3452
+ title: Tomography
+ edam:topic_3473:
+ text: edam:topic_3473
+ description: The discovery of patterns in large data sets and the extraction
+ and trasnsformation of those patterns into a useful format.
+ meaning: edam:topic_3473
+ title: Data mining
+ edam:topic_3474:
+ text: edam:topic_3474
+ description: A topic concerning the application of artificial intelligence
+ methods to algorithms, in order to create methods that can learn from data
+ in order to generate an output, rather than relying on explicitly encoded
+ information only.
+ meaning: edam:topic_3474
+ title: Machine learning
+ edam:topic_3489:
+ text: edam:topic_3489
+ description: The general handling of data stored in digital archives such
+ as databases, databanks, web portals, and other data resources.
+ meaning: edam:topic_3489
+ title: Database management
+ edam:topic_3500:
+ text: edam:topic_3500
+ description: Animals, e.g. information on a specific animal genome including
+ molecular sequences, genes and annotation.
+ meaning: edam:topic_3500
+ title: Zoology
+ edam:topic_3510:
+ text: edam:topic_3510
+ description: The biology, archival, detection, prediction and analysis of
+ positional features such as functional and other key sites, in protein sequences
+ and the conserved patterns (motifs, profiles etc.) that may be used to describe
+ them.
+ meaning: edam:topic_3510
+ title: Protein sites, features and motifs
+ edam:topic_3511:
+ text: edam:topic_3511
+ description: The biology, archival, detection, prediction and analysis of
+ positional features such as functional and other key sites, in nucleic acid
+ sequences and the conserved patterns (motifs, profiles etc.) that may be
+ used to describe them.
+ meaning: edam:topic_3511
+ title: Nucleic acid sites, features and motifs
+ edam:topic_3512:
+ text: edam:topic_3512
+ description: Transcription of DNA into RNA and features of a messenger RNA
+ (mRNA) molecules including precursor RNA, primary (unprocessed) transcript
+ and fully processed molecules.
+ meaning: edam:topic_3512
+ title: Gene transcripts
+ edam:topic_3516:
+ text: edam:topic_3516
+ description: Genotype experiment including case control, population, and family
+ studies. These might use array based methods and re-sequencing methods.
+ meaning: edam:topic_3516
+ title: Genotyping experiment
+ edam:topic_3517:
+ text: edam:topic_3517
+ description: Genome-wide association study experiments.
+ meaning: edam:topic_3517
+ title: GWAS study
+ edam:topic_3518:
+ text: edam:topic_3518
+ description: Microarray experiments including conditions, protocol, sample:data
+ relationships etc.
+ meaning: edam:topic_3518
+ title: Microarray experiment
+ edam:topic_3519:
+ text: edam:topic_3519
+ description: PCR experiments, e.g. quantitative real-time PCR.
+ meaning: edam:topic_3519
+ title: PCR experiment
+ edam:topic_3520:
+ text: edam:topic_3520
+ description: Proteomics experiments.
+ meaning: edam:topic_3520
+ title: Proteomics experiment
+ edam:topic_3523:
+ text: edam:topic_3523
+ description: Experiment in which the expression of a specific gene is post-transcriptionally
+ knocked down or silenced by means of a small RNA (sRNA) causing the degradation
+ of the gene transcript (mRNA), and thus preventing the production of the
+ corresponding protein.
+ meaning: edam:topic_3523
+ title: RNAi experiment
+ edam:topic_3524:
+ text: edam:topic_3524
+ description: Biological computational model experiments (simulation), for
+ example the minimum information required in order to permit its correct
+ interpretation and reproduction.
+ meaning: edam:topic_3524
+ title: Simulation experiment
+ edam:topic_3534:
+ text: edam:topic_3534
+ description: Binding sites in proteins, including cleavage sites (for a proteolytic
+ enzyme or agent), key residues involved in protein folding, catalytic residues
+ (active site) of an enzyme, ligand-binding (non-catalytic) residues of a
+ protein, such as sites that bind metal, prosthetic groups or lipids, RNA
+ and DNA-binding proteins and binding sites etc.
+ meaning: edam:topic_3534
+ title: Protein binding sites
+ edam:topic_3538:
+ text: edam:topic_3538
+ description: Disordered structure in a protein.
+ meaning: edam:topic_3538
+ title: Protein disordered structure
+ edam:topic_3542:
+ text: edam:topic_3542
+ description: Secondary structure (predicted or real) of a protein, including
+ super-secondary structure.
+ meaning: edam:topic_3542
+ title: Protein secondary structure
+ edam:topic_3569:
+ text: edam:topic_3569
+ description: The application of mathematics to specific problems in science,
+ typically by the formulation and analysis of mathematical models.
+ meaning: edam:topic_3569
+ title: Applied mathematics
+ edam:topic_3570:
+ text: edam:topic_3570
+ description: The study of abstract mathematical concepts.
+ meaning: edam:topic_3570
+ title: Pure mathematics
+ edam:topic_3571:
+ text: edam:topic_3571
+ description: Data governance is the control of data entry and maintenance
+ to ensure the data meets defined standards, qualities, or constraints.
+ meaning: edam:topic_3571
+ title: Data governance
+ edam:topic_3572:
+ text: edam:topic_3572
+ description: The quality, integrity, and cleaning up of data.
+ meaning: edam:topic_3572
+ title: Data quality management
+ edam:topic_3573:
+ text: edam:topic_3573
+ description: The study of organisms in freshwater ecosystems.
+ meaning: edam:topic_3573
+ title: Freshwater biology
+ edam:topic_3574:
+ text: edam:topic_3574
+ description: The study of inheritance in human beings.
+ meaning: edam:topic_3574
+ title: Human genetics
+ edam:topic_3575:
+ text: edam:topic_3575
+ description: Health problems that are prevalent in tropical and subtropical
+ regions.
+ meaning: edam:topic_3575
+ title: Tropical medicine
+ edam:topic_3576:
+ text: edam:topic_3576
+ description: Biotechnology applied to the medical sciences and the development
+ of medicines.
+ meaning: edam:topic_3576
+ title: Medical biotechnology
+ edam:topic_3577:
+ text: edam:topic_3577
+ description: An approach to medicine whereby decisions, practices and are
+ tailored to the individual patient based on their predicted response or
+ risk of disease.
+ meaning: edam:topic_3577
+ title: Personalised medicine
+ edam:topic_3656:
+ text: edam:topic_3656
+ description: Experimental techniques to purify a protein-DNA crosslinked complex.
+ Usually sequencing follows e.g. in the techniques ChIP-chip, ChIP-seq and
+ MeDIP-seq.
+ meaning: edam:topic_3656
+ title: Immunoprecipitation experiment
+ edam:topic_3673:
+ text: edam:topic_3673
+ description: Laboratory technique to sequence the complete DNA sequence of
+ an organism's genome at a single time.
+ meaning: edam:topic_3673
+ title: Whole genome sequencing
+ edam:topic_3674:
+ text: edam:topic_3674
+ description: Laboratory technique to sequence the methylated regions in DNA.
+ meaning: edam:topic_3674
+ title: Methylated DNA immunoprecipitation
+ edam:topic_3676:
+ text: edam:topic_3676
+ description: Laboratory technique to sequence all the protein-coding regions
+ in a genome, i.e., the exome.
+ meaning: edam:topic_3676
+ title: Exome sequencing
+ edam:topic_3678:
+ text: edam:topic_3678
+ description: The design of an experiment intended to test a hypothesis, and
+ describe or explain empirical data obtained under various experimental conditions.
+ meaning: edam:topic_3678
+ title: Experimental design and studies
+ edam:topic_3679:
+ text: edam:topic_3679
+ description: The design of an experiment involving non-human animals.
+ meaning: edam:topic_3679
+ title: Animal study
+ edam:topic_3697:
+ text: edam:topic_3697
+ description: The ecology of microorganisms including their relationship with
+ one another and their environment.
+ meaning: edam:topic_3697
+ title: Microbial ecology
+ edam:topic_3794:
+ text: edam:topic_3794
+ description: An antibody-based technique used to map in vivo RNA-protein interactions.
+ meaning: edam:topic_3794
+ title: RNA immunoprecipitation
+ edam:topic_3796:
+ text: edam:topic_3796
+ description: Large-scale study (typically comparison) of DNA sequences of
+ populations.
+ meaning: edam:topic_3796
+ title: Population genomics
+ edam:topic_3810:
+ text: edam:topic_3810
+ description: Multidisciplinary study, research and development within the
+ field of agriculture.
+ meaning: edam:topic_3810
+ title: Agricultural science
+ edam:topic_3837:
+ text: edam:topic_3837
+ description: Approach which samples, in parallel, all genes in all organisms
+ present in a given sample, e.g. to provide insight into biodiversity and
+ function.
+ meaning: edam:topic_3837
+ title: Metagenomic sequencing
+ edam:topic_3855:
+ text: edam:topic_3855
+ description: Study of the environment, the interactions between its physical,
+ chemical, and biological components and it's effect on life. Also how humans
+ impact upon the environment, and how we can manage and utilise natural resources.
+ meaning: edam:topic_3855
+ title: Environmental sciences
+ edam:topic_3892:
+ text: edam:topic_3892
+ description: The study and simulation of molecular conformations using a computational
+ model and computer simulations.
+ meaning: edam:topic_3892
+ title: Biomolecular simulation
+ edam:topic_3895:
+ text: edam:topic_3895
+ description: The application of multi-disciplinary science and technology
+ for the construction of artificial biological systems for diverse applications.
+ meaning: edam:topic_3895
+ title: Synthetic biology
+ edam:topic_3912:
+ text: edam:topic_3912
+ description: The application of biotechnology to directly manipulate an organism's
+ genes.
+ meaning: edam:topic_3912
+ title: Genetic engineering
+ edam:topic_3922:
+ text: edam:topic_3922
+ description: A field of biological research focused on the discovery and identification
+ of peptides, typically by comparing mass spectra against a protein database.
+ meaning: edam:topic_3922
+ title: Proteogenomics
+ edam:topic_3923:
+ text: edam:topic_3923
+ description: Laboratory experiment to identify the differences between a specific
+ genome (of an individual) and a reference genome (developed typically from
+ many thousands of individuals). WGS re-sequencing is used as golden standard
+ to detect variations compared to a given reference genome, including small
+ variants (SNP and InDels) as well as larger genome re-organisations (CNVs,
+ translocations, etc.).
+ meaning: edam:topic_3923
+ title: Genome resequencing
+ edam:topic_3930:
+ text: edam:topic_3930
+ description: A biomedical field that bridges immunology and genetics, to study
+ the genetic basis of the immune system.
+ meaning: edam:topic_3930
+ title: Immunogenetics
+ edam:topic_3931:
+ text: edam:topic_3931
+ description: Interdisciplinary science focused on extracting information from
+ chemical systems by data analytical approaches, for example multivariate
+ statistics, applied mathematics, and computer science.
+ meaning: edam:topic_3931
+ title: Chemometrics
+ edam:topic_3934:
+ text: edam:topic_3934
+ description: Cytometry is the measurement of the characteristics of cells.
+ meaning: edam:topic_3934
+ title: Cytometry
+ edam:topic_3939:
+ text: edam:topic_3939
+ description: Biotechnology approach that seeks to optimize cellular genetic
+ and regulatory processes in order to increase the cells' production of a
+ certain substance.
+ meaning: edam:topic_3939
+ title: Metabolic engineering
+ edam:topic_3940:
+ text: edam:topic_3940
+ description: Molecular biology methods used to analyze the spatial organization
+ of chromatin in a cell.
+ meaning: edam:topic_3940
+ title: Chromosome conformation capture
+ edam:topic_3941:
+ text: edam:topic_3941
+ description: The study of microbe gene expression within natural environments
+ (i.e. the metatranscriptome).
+ meaning: edam:topic_3941
+ title: Metatranscriptomics
+ edam:topic_3943:
+ text: edam:topic_3943
+ description: The reconstruction and analysis of genomic information in extinct
+ species.
+ meaning: edam:topic_3943
+ title: Paleogenomics
+ edam:topic_3944:
+ text: edam:topic_3944
+ description: The biological classification of organisms by categorizing them
+ in groups ("clades") based on their most recent common ancestor.
+ meaning: edam:topic_3944
+ title: Cladistics
+ edam:topic_3945:
+ text: edam:topic_3945
+ description: The study of the process and mechanism of change of biomolecules
+ such as DNA, RNA, and proteins across generations.
+ meaning: edam:topic_3945
+ title: Molecular evolution
+ edam:topic_3948:
+ text: edam:topic_3948
+ description: Immunoinformatics is the field of computational biology that
+ deals with the study of immunoloogical questions. Immunoinformatics is at
+ the interface between immunology and computer science. It takes advantage
+ of computational, statistical, mathematical approaches and enhances the
+ understanding of immunological knowledge.
+ meaning: edam:topic_3948
+ title: Immunoinformatics
+ edam:topic_3954:
+ text: edam:topic_3954
+ description: A diagnostic imaging technique based on the application of ultrasound.
+ meaning: edam:topic_3954
+ title: Echography
+ edam:topic_3955:
+ text: edam:topic_3955
+ description: Experimental approaches to determine the rates of metabolic reactions
+ - the metabolic fluxes - within a biological entity.
+ meaning: edam:topic_3955
+ title: Fluxomics
+ edam:topic_3957:
+ text: edam:topic_3957
+ description: An experiment for studying protein-protein interactions.
+ meaning: edam:topic_3957
+ title: Protein interaction experiment
+ edam:topic_3958:
+ text: edam:topic_3958
+ description: A DNA structural variation, specifically a duplication or deletion
+ event, resulting in sections of the genome to be repeated, or the number
+ of repeats in the genome to vary between individuals.
+ meaning: edam:topic_3958
+ title: Copy number variation
+ edam:topic_3959:
+ text: edam:topic_3959
+ description: The branch of genetics concerned with the relationships between
+ chromosomes and cellular behaviour, especially during mitosis and meiosis.
+ meaning: edam:topic_3959
+ title: Cytogenetics
+ edam:topic_3966:
+ text: edam:topic_3966
+ description: The design of vaccines to protect against a particular pathogen,
+ including antigens, delivery systems, and adjuvants to elicit a predictable
+ immune response against specific epitopes.
+ meaning: edam:topic_3966
+ title: Vaccinology
+ edam:topic_3967:
+ text: edam:topic_3967
+ description: The study of immune system as a whole, its regulation and response
+ to pathogens using genome-wide approaches.
+ meaning: edam:topic_3967
+ title: Immunomics
+ edam:topic_3974:
+ text: edam:topic_3974
+ description: 'Epistasis can be defined as the ability of the genotype at one
+ locus to supersede the phenotypic effect of a mutation at another locus.
+ This interaction between genes can occur at different level: gene expression,
+ protein levels, etc...'
+ meaning: edam:topic_3974
+ title: Epistasis
+ edam:topic_4010:
+ text: edam:topic_4010
+ description: Open science encompasses the practices of making scientific research
+ transparent and participatory, and its outputs publicly accessible.
+ meaning: edam:topic_4010
+ title: Open science
+ edam:topic_4011:
+ text: edam:topic_4011
+ description: Data rescue denotes digitalisation, formatting, archival, and
+ publication of data that were not available in accessible or usable form.
+ Examples are data from private archives, data inside publications, or in
+ paper records stored privately or publicly.
+ meaning: edam:topic_4011
+ title: Data rescue
+ edam:topic_4012:
+ text: edam:topic_4012
+ description: FAIR data is scientific data that meets the principles of being
+ findable, accessible, interoperable, and reusable.
+ meaning: edam:topic_4012
+ title: FAIR data
+ edam:topic_4013:
+ text: edam:topic_4013
+ description: Microbial mechanisms for protecting microorganisms against antimicrobial
+ agents.
+ meaning: edam:topic_4013
+ title: Antimicrobial resistance
+ edam:topic_4014:
+ text: edam:topic_4014
+ description: The monitoring method for measuring electrical activity in the
+ brain.
+ meaning: edam:topic_4014
+ title: Electroencephalography
+ edam:topic_4016:
+ text: edam:topic_4016
+ description: The monitoring method for measuring electrical activity in the
+ heart.
+ meaning: edam:topic_4016
+ title: Electrocardiography
+ edam:topic_4017:
+ text: edam:topic_4017
+ description: A method for studying biomolecules and other structures at very
+ low (cryogenic) temperature using electron microscopy.
+ meaning: edam:topic_4017
+ title: Cryogenic electron microscopy
+ edam:topic_4019:
+ text: edam:topic_4019
+ description: Biosciences, or life sciences, include fields of study related
+ to life, living beings, and biomolecules.
+ meaning: edam:topic_4019
+ title: Biosciences
+ edam:topic_4020:
+ text: edam:topic_4020
+ description: The carbon cycle is the biogeochemical pathway of carbon moving
+ through the different parts of the Earth (such as ocean, atmosphere, soil),
+ or eventually another planet.
+ meaning: edam:topic_4020
+ title: Carbon cycle
+ edam:topic_4021:
+ text: edam:topic_4021
+ description: Multiomics concerns integration of data from multiple omics (e.g.
+ transcriptomics, proteomics, epigenomics).
+ meaning: edam:topic_4021
+ title: Multiomics
+ edam:topic_4027:
+ text: edam:topic_4027
+ description: With ribosome profiling, ribosome-protected mRNA fragments are
+ analyzed with RNA-seq techniques leading to a genome-wide measurement of
+ the translation landscape.
+ meaning: edam:topic_4027
+ title: Ribosome Profiling
+ edam:topic_4028:
+ text: edam:topic_4028
+ description: Combined with NGS (Next Generation Sequencing) technologies,
+ single-cell sequencing allows the study of genetic information (DNA, RNA,
+ epigenome...) at a single cell level. It is often used for differential
+ analysis and gene expression profiling.
+ meaning: edam:topic_4028
+ title: Single-cell sequencing
+ edam:topic_4029:
+ text: edam:topic_4029
+ description: The study of mechanical waves in liquids, solids, and gases.
+ meaning: edam:topic_4029
+ title: Acoustics
+ edam:topic_4030:
+ text: edam:topic_4030
+ description: Interdisplinary study of behavior, precise control, and manipulation
+ of low (microlitre) volume fluids in constrained space.
+ meaning: edam:topic_4030
+ title: Microfluidics
+ edam:topic_4037:
+ text: edam:topic_4037
+ description: Genomic imprinting is a gene regulation mechanism by which a
+ subset of genes are expressed from one of the two parental chromosomes only.
+ Imprinted genes are organized in clusters, their silencing/activation of
+ the imprinted loci involves epigenetic marks (DNA methylation, etc) and
+ so-called imprinting control regions (ICR). It has been described in mammals,
+ but also plants and insects.
+ meaning: edam:topic_4037
+ title: Genomic imprinting
+ edam:topic_4038:
+ text: edam:topic_4038
+ description: Metabarcoding is the barcoding of (environmental) DNA or RNA
+ to identify multiple taxa from the same sample.
+ meaning: edam:topic_4038
+ title: Metabarcoding
+ edam:topic_4044:
+ text: edam:topic_4044
+ description: Data protection is a topic concerning data that should be protected
+ from disclosure, damage, or unauthorised access, due to its sensitive nature.
+ meaning: edam:topic_4044
+ title: Data protection
+ edam:topic_4045:
+ text: edam:topic_4045
+ description: Cybersecurity is a topic comprising the approaches and technologies
+ that enable the protection of computer systems, networks and programs from
+ digital attacks. It ensures the availability, integrity, and confidentiality
+ of processed and stored information.
+ meaning: edam:topic_4045
+ title: Cybersecurity
+ edam:topic_4046:
+ text: edam:topic_4046
+ description: Version control is a technology for consistent management, storing,
+ and sharing of evolving versions of digital artefacts, such as computer
+ programs, scripts, documents, data, or media files.
+ meaning: edam:topic_4046
+ title: Version control
+ edam:topic_4047:
+ text: edam:topic_4047
+ description: Software management comprises the practices and principles of
+ taking care of software and software-based or software-like services, other
+ than programming and maintenance. This includes for example taking care
+ of the associated information and documentation, and the processes of contribution,
+ validation, release/publication, or deployment.
+ meaning: edam:topic_4047
+ title: Software management
+ edam:topic_4051:
+ text: edam:topic_4051
+ description: Chromatin immunoprecipitation-based exeperiment similar to ChIP-seq,
+ with an additional experimental step using an exonuclease to increase the
+ resolution of protein binding site identification.
+ meaning: edam:topic_4051
+ title: ChIP-exo
+ edam:topic_4052:
+ text: edam:topic_4052
+ description: High-throughput genomic and epigenomic technique that capture
+ chromatin conformation, allowing a genome-wide identification of chromatin
+ interactions and structure.
+ meaning: edam:topic_4052
+ title: Hi-C
+ edam:topic_4053:
+ text: edam:topic_4053
+ description: Assay for Transposase-Accessible Chromatin with high throughput
+ sequencing. This technique is designed for the genome-wide detection of
+ open chromatin regions.
+ meaning: edam:topic_4053
+ title: ATAC-seq
+ edam:topic_4054:
+ text: edam:topic_4054
+ description: Experiment in which the expression of a given gene is knocked
+ down by means of a micro RNA (miRNA) causing the degradation of the gene
+ transcript (mRNA).
+ meaning: edam:topic_4054
+ title: miRNA silencing
+ edam:topic_4055:
+ text: edam:topic_4055
+ description: Experiment in which the expression of a given gene is knocked
+ down by means of a small interfering RNA (siRNA) causing the degradation
+ of the gene transcript (mRNA).
+ meaning: edam:topic_4055
+ title: siRNA experiment
+ edam:topic_4056:
+ text: edam:topic_4056
+ description: Long-read sequencing is a sequencing method that produces reads
+ thousands to millions of base pairs long, allowing for better resolution
+ of complex regions, structural variants, and full-length transcripts.
+ meaning: edam:topic_4056
+ title: Long-read sequencing
+ edam:topic_4057:
+ text: edam:topic_4057
+ description: Short-read sequencing is a high-throughput sequencing method
+ that generates millions of short nucleotide fragments, typically 50–300
+ base pairs in length.
+ meaning: edam:topic_4057
+ title: Short-read sequencing
+ edam:topic_4060:
+ text: edam:topic_4060
+ description: Metaproteomics is the profiling of proteins in a sample that
+ contains material from multiple species or strains of organisms.
+ meaning: edam:topic_4060
+ title: Metaproteomics
+ edam:topic_4061:
+ text: edam:topic_4061
+ description: Bisulfite sequencing is a sequencing technique used to determine
+ DNA methylation patterns by treating DNA with bisulfite, which converts
+ unmethylated cytosines to uracils while leaving methylated cytosines unchanged.
+ meaning: edam:topic_4061
+ title: Bisulfite sequencing
+ edam:topic_4062:
+ text: edam:topic_4062
+ description: Bulk RNA barcoding and sequencing (BRB-seq) is a highly mutliplexed
+ bulk RNA-Seq technique where each RNA sample gets a barcode, and many samples
+ are sequenced together.
+ meaning: edam:topic_4062
+ title: Bulk RNA barcoding and sequencing
+ edam:topic_4063:
+ text: edam:topic_4063
+ description: DNase sequencing is a technique used to identify regions of open
+ chromatin by sequencing DNA fragments generated after treatment with DNase
+ I, which preferentially cuts accessible DNA.
+ meaning: edam:topic_4063
+ title: DNase sequencing
+ edam:topic_4064:
+ text: edam:topic_4064
+ description: Specific sequencing of small RNAs using a variant of RNA-seq,
+ with an additional fragment size selection step.
+ meaning: edam:topic_4064
+ title: MicroRNA sequencing
+ edam:topic_4065:
+ text: edam:topic_4065
+ description: Exposomics is the systematic and comprehensive study of the exposome
+ and the associated biological responses (exposure-phenotype interaction).
+ Exposome is the totality of environmental exposures, that is, the cumulative
+ (e.g. life-long) totality of contacts between external factors (e.g. chemical
+ agents) and a living organism, a population, or a biological taxon.
+ meaning: edam:topic_4065
+ title: Exposomics
+ reachable_from:
+ source_ontology: bioregistry:edam
+ source_nodes:
+ - edam:topic_0003
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: false
+ EnumDataSourceType:
+ name: EnumDataSourceType
+ description: Approaches to ascertain information about a participant.
+ title: Data Source Type
+ from_schema: https://includedcc.org/common-access-model/EnumDataSourceType
+ permissible_values:
+ CAMO:0000014:
+ text: CAMO:0000014
+ description: Data obtained directly from an Electronic Health Record.
+ title: Electronic Health Record
+ aliases:
+ - medical_record
+ CAMO:0000010:
+ text: CAMO:0000010
+ description: Data obtained from a survey or questionnaire given to a participant
+ or their representative.
+ title: Survey
+ aliases:
+ - participant_or_caregiver_report
+ CAMO:0000011:
+ text: CAMO:0000011
+ description: Data obtained by research staff for the study.
+ title: Research Assessment
+ aliases:
+ - investigator_assessment
+ CAMO:0000012:
+ text: CAMO:0000012
+ description: Data obtained by research staff interviewing participants, representatives,
+ or others.
+ title: Interview
+ CAMO:0000013:
+ text: CAMO:0000013
+ description: Data obtained directly by research staff examining the participant.
+ title: Physical Examination
+ reachable_from:
+ source_ontology: camo
+ source_nodes:
+ - CAMO:0000009
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: true
+ EnumDataUseModifier:
+ name: EnumDataUseModifier
+ description: Data Use Ontology (DUO) terms for data use modifiers.
+ title: Data Use Modifier
+ from_schema: https://includedcc.org/common-access-model/EnumDataUseModifier
+ permissible_values:
+ DUO:00000044:
+ text: DUO:00000044
+ description: This data use modifier indicates use for purposes of population,
+ origin, or ancestry research is prohibited.
+ meaning: DUO:00000044
+ title: population origins or ancestry research prohibited
+ DUO:0000012:
+ text: DUO:0000012
+ description: This data use modifier indicates that use is limited to studies
+ of a certain research type.
+ meaning: DUO:0000012
+ title: research specific restrictions
+ DUO:0000015:
+ text: DUO:0000015
+ description: This data use modifier indicates that use does not allow methods
+ development research (e.g., development of software or algorithms).
+ meaning: DUO:0000015
+ title: no general methods research
+ DUO:0000016:
+ text: DUO:0000016
+ description: This data use modifier indicates that use is limited to genetic
+ studies only (i.e., studies that include genotype research alone or both
+ genotype and phenotype research, but not phenotype research exclusively)
+ meaning: DUO:0000016
+ title: genetic studies only
+ DUO:0000018:
+ text: DUO:0000018
+ description: This data use modifier indicates that use of the data is limited
+ to not-for-profit organizations and not-for-profit use, non-commercial use.
+ meaning: DUO:0000018
+ title: not for profit, non commercial use only
+ DUO:0000019:
+ text: DUO:0000019
+ description: This data use modifier indicates that requestor agrees to make
+ results of studies using the data available to the larger scientific community.
+ meaning: DUO:0000019
+ title: publication required
+ DUO:0000020:
+ text: DUO:0000020
+ description: 'This could be coupled with a string describing the primary study
+ investigator(s).
+
+ This data use modifier indicates that the requestor must agree to collaboration
+ with the primary study investigator(s).'
+ meaning: DUO:0000020
+ title: collaboration required
+ DUO:0000021:
+ text: DUO:0000021
+ description: This data use modifier indicates that the requestor must provide
+ documentation of local IRB/ERB approval.
+ meaning: DUO:0000021
+ title: ethics approval required
+ DUO:0000022:
+ text: DUO:0000022
+ description: 'This data use modifier indicates that use is limited to within
+ a specific geographic region.
+
+ This should be coupled with an ontology term describing the geographical
+ location the restriction applies to.'
+ meaning: DUO:0000022
+ title: geographical restriction
+ DUO:0000024:
+ text: DUO:0000024
+ description: 'This data use modifier indicates that requestor agrees not to
+ publish results of studies until a specific date.
+
+ This should be coupled with a date specified as ISO8601'
+ meaning: DUO:0000024
+ title: publication moratorium
+ DUO:0000025:
+ text: DUO:0000025
+ description: 'This data use modifier indicates that use is approved for a
+ specific number of months.
+
+ This should be coupled with an integer value indicating the number of months.'
+ meaning: DUO:0000025
+ title: time limit on use
+ DUO:0000026:
+ text: DUO:0000026
+ description: This data use modifier indicates that use is limited to use by
+ approved users.
+ meaning: DUO:0000026
+ title: user specific restriction
+ DUO:0000027:
+ text: DUO:0000027
+ description: This data use modifier indicates that use is limited to use within
+ an approved project.
+ meaning: DUO:0000027
+ title: project specific restriction
+ DUO:0000028:
+ text: DUO:0000028
+ description: This data use modifier indicates that use is limited to use within
+ an approved institution.
+ meaning: DUO:0000028
+ title: institution specific restriction
+ DUO:0000029:
+ text: DUO:0000029
+ description: This data use modifier indicates that the requestor must return
+ derived/enriched data to the database/resource.
+ meaning: DUO:0000029
+ title: return to database or resource
+ DUO:0000043:
+ text: DUO:0000043
+ description: 'Clinical Care is defined as Health care or services provided
+ at home, in a healthcare facility or hospital. Data may be used for clinical
+ decision making.
+
+ This data use modifier indicates that use is allowed for clinical use and
+ care.'
+ meaning: DUO:0000043
+ title: clinical care use
+ DUO:0000045:
+ text: DUO:0000045
+ description: This data use modifier indicates that use of the data is limited
+ to not-for-profit organizations.
+ meaning: DUO:0000045
+ title: not for profit organisation use only
+ DUO:0000046:
+ text: DUO:0000046
+ description: 'This data use modifier indicates that use of the data is limited
+ to not-for-profit use.
+
+ This indicates that data can be used by commercial organisations for research
+ purposes, but not commercial purposes.'
+ meaning: DUO:0000046
+ title: non-commercial use only
+ reachable_from:
+ source_ontology: bioregistry:duo
+ source_nodes:
+ - DUO:0000017
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ EnumDataUsePermission:
+ name: EnumDataUsePermission
+ description: Data Use Ontology (DUO) terms for data use permissions.
+ title: Data Use Permission
+ from_schema: https://includedcc.org/common-access-model/EnumDataUsePermission
+ permissible_values:
+ DUO:0000004:
+ text: DUO:0000004
+ description: This data use permission indicates there is no restriction on
+ use.
+ meaning: DUO:0000004
+ title: no restriction
+ DUO:0000006:
+ text: DUO:0000006
+ description: This data use permission indicates that use is allowed for health/medical/biomedical
+ purposes; does not include the study of population origins or ancestry.
+ meaning: DUO:0000006
+ title: health or medical or biomedical research
+ DUO:0000007:
+ text: DUO:0000007
+ description: "This data use permission indicates that use is allowed provided\
+ \ it is related to the specified disease.\nThis term should be coupled with\
+ \ a term describing a disease from an ontology to specify the disease the\
+ \ restriction applies to. \n\nDUO recommends MONDO be used, to provide the\
+ \ basis for automated evaluation. For more information see https://github.com/EBISPOT/DUO/blob/master/MONDO_Overview.md\n\
+ \nOther resources, such as the Disease Ontology, HPO, SNOMED-CT or others,\
+ \ can also be used. When those other resources are being used, this may\
+ \ require an extra mapping step to leverage automated matching algorithms."
+ meaning: DUO:0000007
+ title: disease specific research
+ DUO:0000011:
+ text: DUO:0000011
+ description: This data use permission indicates that use of the data is limited
+ to the study of population origins or ancestry.
+ meaning: DUO:0000011
+ title: population origins or ancestry research only
+ DUO:0000042:
+ text: DUO:0000042
+ description: 'This data use permission indicates that use is allowed for general
+ research use for any research purpose.
+
+ This includes but is not limited to: health/medical/biomedical purposes,
+ fundamental biology research, the study of population origins or ancestry,
+ statistical methods and algorithms development, and social-sciences research.'
+ meaning: DUO:0000042
+ title: general research use
+ reachable_from:
+ source_ontology: bioregistry:duo
+ source_nodes:
+ - DUO:0000001
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ EnumEDAMDataTypes:
+ name: EnumEDAMDataTypes
+ description: Data types from the EDAM ontology.
+ from_schema: https://includedcc.org/common-access-model/EnumEDAMDataTypes
+ permissible_values:
+ edam:data_0582:
+ text: edam:data_0582
+ description: An ontology of biological or bioinformatics concepts and relations,
+ a controlled vocabulary, structured glossary etc.
+ meaning: edam:data_0582
+ title: Ontology
+ edam:data_0842:
+ text: edam:data_0842
+ description: A text token, number or something else which identifies an entity,
+ but which may not be persistent (stable) or unique (the same identifier
+ may identify multiple things).
+ meaning: edam:data_0842
+ title: Identifier
+ edam:data_0844:
+ text: edam:data_0844
+ description: Mass of a molecule.
+ meaning: edam:data_0844
+ title: Molecular mass
+ edam:data_0845:
+ text: edam:data_0845
+ description: Net charge of a molecule.
+ meaning: edam:data_0845
+ title: Molecular charge
+ edam:data_0846:
+ text: edam:data_0846
+ description: A specification of a chemical structure.
+ meaning: edam:data_0846
+ title: Chemical formula
+ edam:data_0847:
+ text: edam:data_0847
+ description: A QSAR quantitative descriptor (name-value pair) of chemical
+ structure.
+ meaning: edam:data_0847
+ title: QSAR descriptor
+ edam:data_0849:
+ text: edam:data_0849
+ description: A molecular sequence and associated metadata.
+ meaning: edam:data_0849
+ title: Sequence record
+ edam:data_0850:
+ text: edam:data_0850
+ description: A collection of one or typically multiple molecular sequences
+ (which can include derived data or metadata) that do not (typically) correspond
+ to molecular sequence database records or entries and which (typically)
+ are derived from some analytical method.
+ meaning: edam:data_0850
+ title: Sequence set
+ edam:data_0856:
+ text: edam:data_0856
+ description: How the annotation of a sequence feature (for example in EMBL
+ or Swiss-Prot) was derived.
+ meaning: edam:data_0856
+ title: Sequence feature source
+ edam:data_0857:
+ text: edam:data_0857
+ description: A report of sequence hits and associated data from searching
+ a database of sequences (for example a BLAST search). This will typically
+ include a list of scores (often with statistical evaluation) and a set of
+ alignments for the hits.
+ meaning: edam:data_0857
+ title: Sequence search results
+ edam:data_0858:
+ text: edam:data_0858
+ description: Report on the location of matches ("hits") between sequences,
+ sequence profiles, motifs (conserved or functional patterns) and other types
+ of sequence signatures.
+ meaning: edam:data_0858
+ title: Sequence signature matches
+ edam:data_0860:
+ text: edam:data_0860
+ description: Sequence signature data concerns specific or conserved pattern
+ in molecular sequences and the classifiers used for their identification,
+ including sequence motifs, profiles or other diagnostic element.
+ meaning: edam:data_0860
+ title: Sequence signature data
+ edam:data_0862:
+ text: edam:data_0862
+ description: A dotplot of sequence similarities identified from word-matching
+ or character comparison.
+ meaning: edam:data_0862
+ title: Dotplot
+ edam:data_0863:
+ text: edam:data_0863
+ description: Alignment of multiple molecular sequences.
+ meaning: edam:data_0863
+ title: Sequence alignment
+ edam:data_0865:
+ text: edam:data_0865
+ description: A value representing molecular sequence similarity.
+ meaning: edam:data_0865
+ title: Sequence similarity score
+ edam:data_0867:
+ text: edam:data_0867
+ description: An informative report of molecular sequence alignment-derived
+ data or metadata.
+ meaning: edam:data_0867
+ title: Sequence alignment report
+ edam:data_0870:
+ text: edam:data_0870
+ description: A matrix of estimated evolutionary distance between molecular
+ sequences, such as is suitable for phylogenetic tree calculation.
+ meaning: edam:data_0870
+ title: Sequence distance matrix
+ edam:data_0871:
+ text: edam:data_0871
+ description: Basic character data from which a phylogenetic tree may be generated.
+ meaning: edam:data_0871
+ title: Phylogenetic character data
+ edam:data_0872:
+ text: edam:data_0872
+ description: The raw data (not just an image) from which a phylogenetic tree
+ is directly generated or plotted, such as topology, lengths (in time or
+ in expected amounts of variance) and a confidence interval for each length.
+ meaning: edam:data_0872
+ title: Phylogenetic tree
+ edam:data_0874:
+ text: edam:data_0874
+ description: Matrix of integer or floating point numbers for amino acid or
+ nucleotide sequence comparison.
+ meaning: edam:data_0874
+ title: Comparison matrix
+ edam:data_0878:
+ text: edam:data_0878
+ description: Alignment of the (1D representations of) secondary structure
+ of two or more proteins.
+ meaning: edam:data_0878
+ title: Protein secondary structure alignment
+ edam:data_0880:
+ text: edam:data_0880
+ description: An informative report of secondary structure (predicted or real)
+ of an RNA molecule.
+ meaning: edam:data_0880
+ title: RNA secondary structure
+ edam:data_0881:
+ text: edam:data_0881
+ description: Alignment of the (1D representations of) secondary structure
+ of two or more RNA molecules.
+ meaning: edam:data_0881
+ title: RNA secondary structure alignment
+ edam:data_0883:
+ text: edam:data_0883
+ description: 3D coordinate and associated data for a macromolecular tertiary
+ (3D) structure or part of a structure.
+ meaning: edam:data_0883
+ title: Structure
+ edam:data_0886:
+ text: edam:data_0886
+ description: Alignment (superimposition) of molecular tertiary (3D) structures.
+ meaning: edam:data_0886
+ title: Structure alignment
+ edam:data_0887:
+ text: edam:data_0887
+ description: An informative report of molecular tertiary structure alignment-derived
+ data.
+ meaning: edam:data_0887
+ title: Structure alignment report
+ edam:data_0888:
+ text: edam:data_0888
+ description: A value representing molecular structure similarity, measured
+ from structure alignment or some other type of structure comparison.
+ meaning: edam:data_0888
+ title: Structure similarity score
+ edam:data_0889:
+ text: edam:data_0889
+ description: Some type of structural (3D) profile or template (representing
+ a structure or structure alignment).
+ meaning: edam:data_0889
+ title: Structural profile
+ edam:data_0890:
+ text: edam:data_0890
+ description: A 3D profile-3D profile alignment (each profile representing
+ structures or a structure alignment).
+ meaning: edam:data_0890
+ title: Structural (3D) profile alignment
+ edam:data_0892:
+ text: edam:data_0892
+ description: Matrix of values used for scoring sequence-structure compatibility.
+ meaning: edam:data_0892
+ title: Protein sequence-structure scoring matrix
+ edam:data_0893:
+ text: edam:data_0893
+ description: An alignment of molecular sequence to structure (from threading
+ sequence(s) through 3D structure or representation of structure(s)).
+ meaning: edam:data_0893
+ title: Sequence-structure alignment
+ edam:data_0896:
+ text: edam:data_0896
+ description: An informative human-readable report about one or more specific
+ protein molecules or protein structural domains, derived from analysis of
+ primary (sequence or structural) data.
+ meaning: edam:data_0896
+ title: Protein report
+ edam:data_0897:
+ text: edam:data_0897
+ description: A report of primarily non-positional data describing intrinsic
+ physical, chemical or other properties of a protein molecule or model.
+ meaning: edam:data_0897
+ title: Protein property
+ edam:data_0905:
+ text: edam:data_0905
+ description: Protein-protein interaction data from for example yeast two-hybrid
+ analysis, protein microarrays, immunoaffinity chromatography followed by
+ mass spectrometry, phage display etc.
+ meaning: edam:data_0905
+ title: Protein interaction raw data
+ edam:data_0906:
+ text: edam:data_0906
+ description: Data concerning the interactions (predicted or known) within
+ or between a protein, structural domain or part of a protein. This includes
+ intra- and inter-residue contacts and distances, as well as interactions
+ with other proteins and non-protein entities such as nucleic acid, metal
+ atoms, water, ions etc.
+ meaning: edam:data_0906
+ title: Protein interaction data
+ edam:data_0907:
+ text: edam:data_0907
+ description: An informative report on a specific protein family or other classification
+ or group of protein sequences or structures.
+ meaning: edam:data_0907
+ title: Protein family report
+ edam:data_0909:
+ text: edam:data_0909
+ description: The maximum initial velocity or rate of a reaction. It is the
+ limiting velocity as substrate concentrations get very large.
+ meaning: edam:data_0909
+ title: Vmax
+ edam:data_0910:
+ text: edam:data_0910
+ description: Km is the concentration (usually in Molar units) of substrate
+ that leads to half-maximal velocity of an enzyme-catalysed reaction.
+ meaning: edam:data_0910
+ title: Km
+ edam:data_0912:
+ text: edam:data_0912
+ description: A report of primarily non-positional data describing intrinsic
+ physical, chemical or other properties of a nucleic acid molecule.
+ meaning: edam:data_0912
+ title: Nucleic acid property
+ edam:data_0914:
+ text: edam:data_0914
+ description: Data derived from analysis of codon usage (typically a codon
+ usage table) of DNA sequences.
+ meaning: edam:data_0914
+ title: Codon usage data
+ edam:data_0916:
+ text: edam:data_0916
+ description: A report on predicted or actual gene structure, regions which
+ make an RNA product and features such as promoters, coding regions, splice
+ sites etc.
+ meaning: edam:data_0916
+ title: Gene report
+ edam:data_0919:
+ text: edam:data_0919
+ description: A human-readable collection of information about a specific chromosome.
+ meaning: edam:data_0919
+ title: Chromosome report
+ edam:data_0920:
+ text: edam:data_0920
+ description: A human-readable collection of information about the set of genes
+ (or allelic forms) present in an individual, organism or cell and associated
+ with a specific physical characteristic, or a report concerning an organisms
+ traits and phenotypes.
+ meaning: edam:data_0920
+ title: Genotype/phenotype report
+ edam:data_0924:
+ text: edam:data_0924
+ description: Fluorescence trace data generated by an automated DNA sequencer,
+ which can be interpreted as a molecular sequence (reads), given associated
+ sequencing metadata such as base-call quality scores.
+ meaning: edam:data_0924
+ title: Sequence trace
+ edam:data_0925:
+ text: edam:data_0925
+ description: An assembly of fragments of a (typically genomic) DNA sequence.
+ meaning: edam:data_0925
+ title: Sequence assembly
+ edam:data_0926:
+ text: edam:data_0926
+ description: Radiation hybrid scores (RH) scores for one or more markers.
+ meaning: edam:data_0926
+ title: RH scores
+ edam:data_0927:
+ text: edam:data_0927
+ description: A human-readable collection of information about the linkage
+ of alleles.
+ meaning: edam:data_0927
+ title: Genetic linkage report
+ edam:data_0928:
+ text: edam:data_0928
+ description: Data quantifying the level of expression of (typically) multiple
+ genes, derived for example from microarray experiments.
+ meaning: edam:data_0928
+ title: Gene expression profile
+ edam:data_0937:
+ text: edam:data_0937
+ description: X-ray crystallography data.
+ meaning: edam:data_0937
+ title: Electron density map
+ edam:data_0938:
+ text: edam:data_0938
+ description: Nuclear magnetic resonance (NMR) raw data, typically for a protein.
+ meaning: edam:data_0938
+ title: Raw NMR data
+ edam:data_0939:
+ text: edam:data_0939
+ description: Protein secondary structure from protein coordinate or circular
+ dichroism (CD) spectroscopic data.
+ meaning: edam:data_0939
+ title: CD spectra
+ edam:data_0940:
+ text: edam:data_0940
+ description: Volume map data from electron microscopy.
+ meaning: edam:data_0940
+ title: Volume map
+ edam:data_0942:
+ text: edam:data_0942
+ description: Two-dimensional gel electrophoresis image.
+ meaning: edam:data_0942
+ title: 2D PAGE image
+ edam:data_0943:
+ text: edam:data_0943
+ description: Spectra from mass spectrometry.
+ meaning: edam:data_0943
+ title: Mass spectrum
+ edam:data_0944:
+ text: edam:data_0944
+ description: A set of peptide masses (peptide mass fingerprint) from mass
+ spectrometry.
+ meaning: edam:data_0944
+ title: Peptide mass fingerprint
+ edam:data_0945:
+ text: edam:data_0945
+ description: Protein or peptide identifications with evidence supporting the
+ identifications, for example from comparing a peptide mass fingerprint (from
+ mass spectrometry) to a sequence database, or the set of typical spectra
+ one obtains when running a protein through a mass spectrometer.
+ meaning: edam:data_0945
+ title: Peptide identification
+ edam:data_0949:
+ text: edam:data_0949
+ description: Basic information, annotation or documentation concerning a workflow
+ (but not the workflow itself).
+ meaning: edam:data_0949
+ title: Workflow metadata
+ edam:data_0950:
+ text: edam:data_0950
+ description: A biological model represented in mathematical terms.
+ meaning: edam:data_0950
+ title: Mathematical model
+ edam:data_0951:
+ text: edam:data_0951
+ description: A value representing estimated statistical significance of some
+ observed data; typically sequence database hits.
+ meaning: edam:data_0951
+ title: Statistical estimate score
+ edam:data_0954:
+ text: edam:data_0954
+ description: A mapping of the accession numbers (or other database identifier)
+ of entries between (typically) two biological or biomedical databases.
+ meaning: edam:data_0954
+ title: Database cross-mapping
+ edam:data_0955:
+ text: edam:data_0955
+ description: An index of data of biological relevance.
+ meaning: edam:data_0955
+ title: Data index
+ edam:data_0956:
+ text: edam:data_0956
+ description: A human-readable collection of information concerning an analysis
+ of an index of biological data.
+ meaning: edam:data_0956
+ title: Data index report
+ edam:data_0957:
+ text: edam:data_0957
+ description: Basic information on bioinformatics database(s) or other data
+ sources such as name, type, description, URL etc.
+ meaning: edam:data_0957
+ title: Database metadata
+ edam:data_0958:
+ text: edam:data_0958
+ description: Basic information about one or more bioinformatics applications
+ or packages, such as name, type, description, or other documentation.
+ meaning: edam:data_0958
+ title: Tool metadata
+ edam:data_0960:
+ text: edam:data_0960
+ description: Textual metadata on a software author or end-user, for example
+ a person or other software.
+ meaning: edam:data_0960
+ title: User metadata
+ edam:data_0962:
+ text: edam:data_0962
+ description: A human-readable collection of information about a specific chemical
+ compound.
+ meaning: edam:data_0962
+ title: Small molecule report
+ edam:data_0963:
+ text: edam:data_0963
+ description: A human-readable collection of information about a particular
+ strain of organism cell line including plants, virus, fungi and bacteria.
+ The data typically includes strain number, organism type, growth conditions,
+ source and so on.
+ meaning: edam:data_0963
+ title: Cell line report
+ edam:data_0966:
+ text: edam:data_0966
+ description: A term (name) from an ontology.
+ meaning: edam:data_0966
+ title: Ontology term
+ edam:data_0967:
+ text: edam:data_0967
+ description: Data concerning or derived from a concept from a biological ontology.
+ meaning: edam:data_0967
+ title: Ontology concept data
+ edam:data_0968:
+ text: edam:data_0968
+ description: Keyword(s) or phrase(s) used (typically) for text-searching purposes.
+ meaning: edam:data_0968
+ title: Keyword
+ edam:data_0970:
+ text: edam:data_0970
+ description: Bibliographic data that uniquely identifies a scientific article,
+ book or other published material.
+ meaning: edam:data_0970
+ title: Citation
+ edam:data_0971:
+ text: edam:data_0971
+ description: A scientific text, typically a full text article from a scientific
+ journal.
+ meaning: edam:data_0971
+ title: Article
+ edam:data_0972:
+ text: edam:data_0972
+ description: A human-readable collection of information resulting from text
+ mining.
+ meaning: edam:data_0972
+ title: Text mining report
+ edam:data_0976:
+ text: edam:data_0976
+ description: An identifier that identifies a particular type of data.
+ meaning: edam:data_0976
+ title: Identifier (by type of entity)
+ edam:data_0977:
+ text: edam:data_0977
+ description: An identifier of a bioinformatics tool, e.g. an application or
+ web service.
+ meaning: edam:data_0977
+ title: Tool identifier
+ edam:data_0982:
+ text: edam:data_0982
+ description: Name or other identifier of a molecule.
+ meaning: edam:data_0982
+ title: Molecule identifier
+ edam:data_0983:
+ text: edam:data_0983
+ description: Identifier (e.g. character symbol) of a specific atom.
+ meaning: edam:data_0983
+ title: Atom ID
+ edam:data_0984:
+ text: edam:data_0984
+ description: Name of a specific molecule.
+ meaning: edam:data_0984
+ title: Molecule name
+ edam:data_0987:
+ text: edam:data_0987
+ description: Name of a chromosome.
+ meaning: edam:data_0987
+ title: Chromosome name
+ edam:data_0988:
+ text: edam:data_0988
+ description: Identifier of a peptide chain.
+ meaning: edam:data_0988
+ title: Peptide identifier
+ edam:data_0989:
+ text: edam:data_0989
+ description: Identifier of a protein.
+ meaning: edam:data_0989
+ title: Protein identifier
+ edam:data_0990:
+ text: edam:data_0990
+ description: Unique name of a chemical compound.
+ meaning: edam:data_0990
+ title: Compound name
+ edam:data_0991:
+ text: edam:data_0991
+ description: Unique registry number of a chemical compound.
+ meaning: edam:data_0991
+ title: Chemical registry number
+ edam:data_0993:
+ text: edam:data_0993
+ description: Identifier of a drug.
+ meaning: edam:data_0993
+ title: Drug identifier
+ edam:data_0994:
+ text: edam:data_0994
+ description: Identifier of an amino acid.
+ meaning: edam:data_0994
+ title: Amino acid identifier
+ edam:data_0995:
+ text: edam:data_0995
+ description: Name or other identifier of a nucleotide.
+ meaning: edam:data_0995
+ title: Nucleotide identifier
+ edam:data_0996:
+ text: edam:data_0996
+ description: Identifier of a monosaccharide.
+ meaning: edam:data_0996
+ title: Monosaccharide identifier
+ edam:data_0997:
+ text: edam:data_0997
+ description: Unique name from Chemical Entities of Biological Interest (ChEBI)
+ of a chemical compound.
+ meaning: edam:data_0997
+ title: Chemical name (ChEBI)
+ edam:data_0998:
+ text: edam:data_0998
+ description: IUPAC recommended name of a chemical compound.
+ meaning: edam:data_0998
+ title: Chemical name (IUPAC)
+ edam:data_0999:
+ text: edam:data_0999
+ description: International Non-proprietary Name (INN or 'generic name') of
+ a chemical compound, assigned by the World Health Organisation (WHO).
+ meaning: edam:data_0999
+ title: Chemical name (INN)
+ edam:data_1000:
+ text: edam:data_1000
+ description: Brand name of a chemical compound.
+ meaning: edam:data_1000
+ title: Chemical name (brand)
+ edam:data_1001:
+ text: edam:data_1001
+ description: Synonymous name of a chemical compound.
+ meaning: edam:data_1001
+ title: Chemical name (synonymous)
+ edam:data_1002:
+ text: edam:data_1002
+ description: CAS registry number of a chemical compound; a unique numerical
+ identifier of chemicals in the scientific literature, as assigned by the
+ Chemical Abstracts Service.
+ meaning: edam:data_1002
+ title: CAS number
+ edam:data_1003:
+ text: edam:data_1003
+ description: Beilstein registry number of a chemical compound.
+ meaning: edam:data_1003
+ title: Chemical registry number (Beilstein)
+ edam:data_1004:
+ text: edam:data_1004
+ description: Gmelin registry number of a chemical compound.
+ meaning: edam:data_1004
+ title: Chemical registry number (Gmelin)
+ edam:data_1005:
+ text: edam:data_1005
+ description: 3-letter code word for a ligand (HET group) from a PDB file,
+ for example ATP.
+ meaning: edam:data_1005
+ title: HET group name
+ edam:data_1006:
+ text: edam:data_1006
+ description: String of one or more ASCII characters representing an amino
+ acid.
+ meaning: edam:data_1006
+ title: Amino acid name
+ edam:data_1007:
+ text: edam:data_1007
+ description: String of one or more ASCII characters representing a nucleotide.
+ meaning: edam:data_1007
+ title: Nucleotide code
+ edam:data_1008:
+ text: edam:data_1008
+ description: Identifier of a polypeptide chain from a protein.
+ meaning: edam:data_1008
+ title: Polypeptide chain ID
+ edam:data_1009:
+ text: edam:data_1009
+ description: Name of a protein.
+ meaning: edam:data_1009
+ title: Protein name
+ edam:data_1010:
+ text: edam:data_1010
+ description: Name or other identifier of an enzyme or record from a database
+ of enzymes.
+ meaning: edam:data_1010
+ title: Enzyme identifier
+ edam:data_1011:
+ text: edam:data_1011
+ description: An Enzyme Commission (EC) number of an enzyme.
+ meaning: edam:data_1011
+ title: EC number
+ edam:data_1012:
+ text: edam:data_1012
+ description: Name of an enzyme.
+ meaning: edam:data_1012
+ title: Enzyme name
+ edam:data_1013:
+ text: edam:data_1013
+ description: Name of a restriction enzyme.
+ meaning: edam:data_1013
+ title: Restriction enzyme name
+ edam:data_1015:
+ text: edam:data_1015
+ description: A unique identifier of molecular sequence feature, for example
+ an ID of a feature that is unique within the scope of the GFF file.
+ meaning: edam:data_1015
+ title: Sequence feature ID
+ edam:data_1016:
+ text: edam:data_1016
+ description: A position of one or more points (base or residue) in a sequence,
+ or part of such a specification.
+ meaning: edam:data_1016
+ title: Sequence position
+ edam:data_1017:
+ text: edam:data_1017
+ description: Specification of range(s) of sequence positions.
+ meaning: edam:data_1017
+ title: Sequence range
+ edam:data_1020:
+ text: edam:data_1020
+ description: The type of a sequence feature, typically a term or accession
+ from the Sequence Ontology, for example an EMBL or Swiss-Prot sequence feature
+ key.
+ meaning: edam:data_1020
+ title: Sequence feature key
+ edam:data_1021:
+ text: edam:data_1021
+ description: Typically one of the EMBL or Swiss-Prot feature qualifiers.
+ meaning: edam:data_1021
+ title: Sequence feature qualifier
+ edam:data_1022:
+ text: edam:data_1022
+ description: A name of a sequence feature, e.g. the name of a feature to be
+ displayed to an end-user. Typically an EMBL or Swiss-Prot feature label.
+ meaning: edam:data_1022
+ title: Sequence feature label
+ edam:data_1023:
+ text: edam:data_1023
+ description: The name of a sequence feature-containing entity adhering to
+ the standard feature naming scheme used by all EMBOSS applications.
+ meaning: edam:data_1023
+ title: EMBOSS Uniform Feature Object
+ edam:data_1025:
+ text: edam:data_1025
+ description: An identifier of a gene, such as a name/symbol or a unique identifier
+ of a gene in a database.
+ meaning: edam:data_1025
+ title: Gene identifier
+ edam:data_1026:
+ text: edam:data_1026
+ description: The short name of a gene; a single word that does not contain
+ white space characters. It is typically derived from the gene name.
+ meaning: edam:data_1026
+ title: Gene symbol
+ edam:data_1027:
+ text: edam:data_1027
+ description: An NCBI unique identifier of a gene.
+ meaning: edam:data_1027
+ title: Gene ID (NCBI)
+ edam:data_1031:
+ text: edam:data_1031
+ description: Identifier of a gene or feature from the CGD database.
+ meaning: edam:data_1031
+ title: Gene ID (CGD)
+ edam:data_1032:
+ text: edam:data_1032
+ description: Identifier of a gene from DictyBase.
+ meaning: edam:data_1032
+ title: Gene ID (DictyBase)
+ edam:data_1033:
+ text: edam:data_1033
+ description: Unique identifier for a gene (or other feature) from the Ensembl
+ database.
+ meaning: edam:data_1033
+ title: Ensembl gene ID
+ edam:data_1034:
+ text: edam:data_1034
+ description: Identifier of an entry from the SGD database.
+ meaning: edam:data_1034
+ title: Gene ID (SGD)
+ edam:data_1035:
+ text: edam:data_1035
+ description: Identifier of a gene from the GeneDB database.
+ meaning: edam:data_1035
+ title: Gene ID (GeneDB)
+ edam:data_1036:
+ text: edam:data_1036
+ description: Identifier of an entry from the TIGR database.
+ meaning: edam:data_1036
+ title: TIGR identifier
+ edam:data_1037:
+ text: edam:data_1037
+ description: Identifier of an gene from the TAIR database.
+ meaning: edam:data_1037
+ title: TAIR accession (gene)
+ edam:data_1038:
+ text: edam:data_1038
+ description: Identifier of a protein structural domain.
+ meaning: edam:data_1038
+ title: Protein domain ID
+ edam:data_1039:
+ text: edam:data_1039
+ description: Identifier of a protein domain (or other node) from the SCOP
+ database.
+ meaning: edam:data_1039
+ title: SCOP domain identifier
+ edam:data_1040:
+ text: edam:data_1040
+ description: Identifier of a protein domain from CATH.
+ meaning: edam:data_1040
+ title: CATH domain ID
+ edam:data_1041:
+ text: edam:data_1041
+ description: A SCOP concise classification string (sccs) is a compact representation
+ of a SCOP domain classification.
+ meaning: edam:data_1041
+ title: SCOP concise classification string (sccs)
+ edam:data_1042:
+ text: edam:data_1042
+ description: Unique identifier (number) of an entry in the SCOP hierarchy,
+ for example 33229.
+ meaning: edam:data_1042
+ title: SCOP sunid
+ edam:data_1043:
+ text: edam:data_1043
+ description: A code number identifying a node from the CATH database.
+ meaning: edam:data_1043
+ title: CATH node ID
+ edam:data_1044:
+ text: edam:data_1044
+ description: The name of a biological kingdom (Bacteria, Archaea, or Eukaryotes).
+ meaning: edam:data_1044
+ title: Kingdom name
+ edam:data_1045:
+ text: edam:data_1045
+ description: The name of a species (typically a taxonomic group) of organism.
+ meaning: edam:data_1045
+ title: Species name
+ edam:data_1046:
+ text: edam:data_1046
+ description: The name of a strain of an organism variant, typically a plant,
+ virus or bacterium.
+ meaning: edam:data_1046
+ title: Strain name
+ edam:data_1047:
+ text: edam:data_1047
+ description: A string of characters that name or otherwise identify a resource
+ on the Internet.
+ meaning: edam:data_1047
+ title: URI
+ edam:data_1048:
+ text: edam:data_1048
+ description: An identifier of a biological or bioinformatics database.
+ meaning: edam:data_1048
+ title: Database ID
+ edam:data_1049:
+ text: edam:data_1049
+ description: The name of a directory.
+ meaning: edam:data_1049
+ title: Directory name
+ edam:data_1050:
+ text: edam:data_1050
+ description: The name (or part of a name) of a file (of any type).
+ meaning: edam:data_1050
+ title: File name
+ edam:data_1051:
+ text: edam:data_1051
+ description: Name of an ontology of biological or bioinformatics concepts
+ and relations.
+ meaning: edam:data_1051
+ title: Ontology name
+ edam:data_1052:
+ text: edam:data_1052
+ description: A Uniform Resource Locator (URL).
+ meaning: edam:data_1052
+ title: URL
+ edam:data_1053:
+ text: edam:data_1053
+ description: A Uniform Resource Name (URN).
+ meaning: edam:data_1053
+ title: URN
+ edam:data_1055:
+ text: edam:data_1055
+ description: A Life Science Identifier (LSID) - a unique identifier of some
+ data.
+ meaning: edam:data_1055
+ title: LSID
+ edam:data_1056:
+ text: edam:data_1056
+ description: The name of a biological or bioinformatics database.
+ meaning: edam:data_1056
+ title: Database name
+ edam:data_1058:
+ text: edam:data_1058
+ description: The name of a file (of any type) with restricted possible values.
+ meaning: edam:data_1058
+ title: Enumerated file name
+ edam:data_1059:
+ text: edam:data_1059
+ description: The extension of a file name.
+ meaning: edam:data_1059
+ title: File name extension
+ edam:data_1060:
+ text: edam:data_1060
+ description: The base name of a file.
+ meaning: edam:data_1060
+ title: File base name
+ edam:data_1061:
+ text: edam:data_1061
+ description: Name of a QSAR descriptor.
+ meaning: edam:data_1061
+ title: QSAR descriptor name
+ edam:data_1063:
+ text: edam:data_1063
+ description: An identifier of molecular sequence(s) or entries from a molecular
+ sequence database.
+ meaning: edam:data_1063
+ title: Sequence identifier
+ edam:data_1064:
+ text: edam:data_1064
+ description: An identifier of a set of molecular sequence(s).
+ meaning: edam:data_1064
+ title: Sequence set ID
+ edam:data_1066:
+ text: edam:data_1066
+ description: Identifier of a molecular sequence alignment, for example a record
+ from an alignment database.
+ meaning: edam:data_1066
+ title: Sequence alignment ID
+ edam:data_1068:
+ text: edam:data_1068
+ description: Identifier of a phylogenetic tree for example from a phylogenetic
+ tree database.
+ meaning: edam:data_1068
+ title: Phylogenetic tree ID
+ edam:data_1069:
+ text: edam:data_1069
+ description: An identifier of a comparison matrix.
+ meaning: edam:data_1069
+ title: Comparison matrix identifier
+ edam:data_1070:
+ text: edam:data_1070
+ description: A unique and persistent identifier of a molecular tertiary structure,
+ typically an entry from a structure database.
+ meaning: edam:data_1070
+ title: Structure ID
+ edam:data_1071:
+ text: edam:data_1071
+ description: Identifier or name of a structural (3D) profile or template (representing
+ a structure or structure alignment).
+ meaning: edam:data_1071
+ title: Structural (3D) profile ID
+ edam:data_1072:
+ text: edam:data_1072
+ description: Identifier of an entry from a database of tertiary structure
+ alignments.
+ meaning: edam:data_1072
+ title: Structure alignment ID
+ edam:data_1073:
+ text: edam:data_1073
+ description: Identifier of an index of amino acid physicochemical and biochemical
+ property data.
+ meaning: edam:data_1073
+ title: Amino acid index ID
+ edam:data_1074:
+ text: edam:data_1074
+ description: Identifier of a report of protein interactions from a protein
+ interaction database (typically).
+ meaning: edam:data_1074
+ title: Protein interaction ID
+ edam:data_1075:
+ text: edam:data_1075
+ description: Identifier of a protein family.
+ meaning: edam:data_1075
+ title: Protein family identifier
+ edam:data_1076:
+ text: edam:data_1076
+ description: Unique name of a codon usage table.
+ meaning: edam:data_1076
+ title: Codon usage table name
+ edam:data_1077:
+ text: edam:data_1077
+ description: Identifier of a transcription factor (or a TF binding site).
+ meaning: edam:data_1077
+ title: Transcription factor identifier
+ edam:data_1078:
+ text: edam:data_1078
+ description: Identifier of an entry from a database of microarray data.
+ meaning: edam:data_1078
+ title: Experiment annotation ID
+ edam:data_1079:
+ text: edam:data_1079
+ description: Identifier of an entry from a database of electron microscopy
+ data.
+ meaning: edam:data_1079
+ title: Electron microscopy model ID
+ edam:data_1080:
+ text: edam:data_1080
+ description: Accession of a report of gene expression (e.g. a gene expression
+ profile) from a database.
+ meaning: edam:data_1080
+ title: Gene expression report ID
+ edam:data_1081:
+ text: edam:data_1081
+ description: Identifier of an entry from a database of genotypes and phenotypes.
+ meaning: edam:data_1081
+ title: Genotype and phenotype annotation ID
+ edam:data_1082:
+ text: edam:data_1082
+ description: Identifier of an entry from a database of biological pathways
+ or networks.
+ meaning: edam:data_1082
+ title: Pathway or network identifier
+ edam:data_1083:
+ text: edam:data_1083
+ description: Identifier of a biological or biomedical workflow, typically
+ from a database of workflows.
+ meaning: edam:data_1083
+ title: Workflow ID
+ edam:data_1084:
+ text: edam:data_1084
+ description: Identifier of a data type definition from some provider.
+ meaning: edam:data_1084
+ title: Data resource definition ID
+ edam:data_1085:
+ text: edam:data_1085
+ description: Identifier of a mathematical model, typically an entry from a
+ database.
+ meaning: edam:data_1085
+ title: Biological model ID
+ edam:data_1086:
+ text: edam:data_1086
+ description: Identifier of an entry from a database of chemicals.
+ meaning: edam:data_1086
+ title: Compound identifier
+ edam:data_1087:
+ text: edam:data_1087
+ description: A unique (typically numerical) identifier of a concept in an
+ ontology of biological or bioinformatics concepts and relations.
+ meaning: edam:data_1087
+ title: Ontology concept ID
+ edam:data_1088:
+ text: edam:data_1088
+ description: Unique identifier of a scientific article.
+ meaning: edam:data_1088
+ title: Article ID
+ edam:data_1089:
+ text: edam:data_1089
+ description: Identifier of an object from the FlyBase database.
+ meaning: edam:data_1089
+ title: FlyBase ID
+ edam:data_1091:
+ text: edam:data_1091
+ description: Name of an object from the WormBase database, usually a human-readable
+ name.
+ meaning: edam:data_1091
+ title: WormBase name
+ edam:data_1092:
+ text: edam:data_1092
+ description: Class of an object from the WormBase database.
+ meaning: edam:data_1092
+ title: WormBase class
+ edam:data_1093:
+ text: edam:data_1093
+ description: A persistent, unique identifier of a molecular sequence database
+ entry.
+ meaning: edam:data_1093
+ title: Sequence accession
+ edam:data_1095:
+ text: edam:data_1095
+ description: The name of a sequence-based entity adhering to the standard
+ sequence naming scheme used by all EMBOSS applications.
+ meaning: edam:data_1095
+ title: EMBOSS Uniform Sequence Address
+ edam:data_1096:
+ text: edam:data_1096
+ description: Accession number of a protein sequence database entry.
+ meaning: edam:data_1096
+ title: Sequence accession (protein)
+ edam:data_1097:
+ text: edam:data_1097
+ description: Accession number of a nucleotide sequence database entry.
+ meaning: edam:data_1097
+ title: Sequence accession (nucleic acid)
+ edam:data_1098:
+ text: edam:data_1098
+ description: Accession number of a RefSeq database entry.
+ meaning: edam:data_1098
+ title: RefSeq accession
+ edam:data_1100:
+ text: edam:data_1100
+ description: An identifier of PIR sequence database entry.
+ meaning: edam:data_1100
+ title: PIR identifier
+ edam:data_1102:
+ text: edam:data_1102
+ description: Primary identifier of a Gramene database entry.
+ meaning: edam:data_1102
+ title: Gramene primary identifier
+ edam:data_1103:
+ text: edam:data_1103
+ description: Identifier of a (nucleic acid) entry from the EMBL/GenBank/DDBJ
+ databases.
+ meaning: edam:data_1103
+ title: EMBL/GenBank/DDBJ ID
+ edam:data_1104:
+ text: edam:data_1104
+ description: A unique identifier of an entry (gene cluster) from the NCBI
+ UniGene database.
+ meaning: edam:data_1104
+ title: Sequence cluster ID (UniGene)
+ edam:data_1105:
+ text: edam:data_1105
+ description: Identifier of a dbEST database entry.
+ meaning: edam:data_1105
+ title: dbEST accession
+ edam:data_1106:
+ text: edam:data_1106
+ description: Identifier of a dbSNP database entry.
+ meaning: edam:data_1106
+ title: dbSNP ID
+ edam:data_1112:
+ text: edam:data_1112
+ description: An identifier of a cluster of molecular sequence(s).
+ meaning: edam:data_1112
+ title: Sequence cluster ID
+ edam:data_1113:
+ text: edam:data_1113
+ description: Unique identifier of an entry from the COG database.
+ meaning: edam:data_1113
+ title: Sequence cluster ID (COG)
+ edam:data_1114:
+ text: edam:data_1114
+ description: Identifier of a sequence motif, for example an entry from a motif
+ database.
+ meaning: edam:data_1114
+ title: Sequence motif identifier
+ edam:data_1115:
+ text: edam:data_1115
+ description: Identifier of a sequence profile.
+ meaning: edam:data_1115
+ title: Sequence profile ID
+ edam:data_1116:
+ text: edam:data_1116
+ description: Identifier of an entry from the ELMdb database of protein functional
+ sites.
+ meaning: edam:data_1116
+ title: ELM ID
+ edam:data_1117:
+ text: edam:data_1117
+ description: Accession number of an entry from the Prosite database.
+ meaning: edam:data_1117
+ title: Prosite accession number
+ edam:data_1118:
+ text: edam:data_1118
+ description: Unique identifier or name of a HMMER hidden Markov model.
+ meaning: edam:data_1118
+ title: HMMER hidden Markov model ID
+ edam:data_1119:
+ text: edam:data_1119
+ description: Unique identifier or name of a profile from the JASPAR database.
+ meaning: edam:data_1119
+ title: JASPAR profile ID
+ edam:data_1123:
+ text: edam:data_1123
+ description: Accession number of an entry from the TreeBASE database.
+ meaning: edam:data_1123
+ title: TreeBASE study accession number
+ edam:data_1124:
+ text: edam:data_1124
+ description: Accession number of an entry from the TreeFam database.
+ meaning: edam:data_1124
+ title: TreeFam accession number
+ edam:data_1126:
+ text: edam:data_1126
+ description: Unique name or identifier of a comparison matrix.
+ meaning: edam:data_1126
+ title: Comparison matrix name
+ edam:data_1127:
+ text: edam:data_1127
+ description: An identifier of an entry from the PDB database.
+ meaning: edam:data_1127
+ title: PDB ID
+ edam:data_1128:
+ text: edam:data_1128
+ description: Identifier of an entry from the AAindex database.
+ meaning: edam:data_1128
+ title: AAindex ID
+ edam:data_1129:
+ text: edam:data_1129
+ description: Accession number of an entry from the BIND database.
+ meaning: edam:data_1129
+ title: BIND accession number
+ edam:data_1130:
+ text: edam:data_1130
+ description: Accession number of an entry from the IntAct database.
+ meaning: edam:data_1130
+ title: IntAct accession number
+ edam:data_1131:
+ text: edam:data_1131
+ description: Name of a protein family.
+ meaning: edam:data_1131
+ title: Protein family name
+ edam:data_1132:
+ text: edam:data_1132
+ description: Name of an InterPro entry, usually indicating the type of protein
+ matches for that entry.
+ meaning: edam:data_1132
+ title: InterPro entry name
+ edam:data_1133:
+ text: edam:data_1133
+ description: Primary accession number of an InterPro entry.
+ meaning: edam:data_1133
+ title: InterPro accession
+ edam:data_1134:
+ text: edam:data_1134
+ description: Secondary accession number of an InterPro entry.
+ meaning: edam:data_1134
+ title: InterPro secondary accession
+ edam:data_1135:
+ text: edam:data_1135
+ description: Unique identifier of an entry from the Gene3D database.
+ meaning: edam:data_1135
+ title: Gene3D ID
+ edam:data_1136:
+ text: edam:data_1136
+ description: Unique identifier of an entry from the PIRSF database.
+ meaning: edam:data_1136
+ title: PIRSF ID
+ edam:data_1137:
+ text: edam:data_1137
+ description: The unique identifier of an entry in the PRINTS database.
+ meaning: edam:data_1137
+ title: PRINTS code
+ edam:data_1138:
+ text: edam:data_1138
+ description: Accession number of a Pfam entry.
+ meaning: edam:data_1138
+ title: Pfam accession number
+ edam:data_1139:
+ text: edam:data_1139
+ description: Accession number of an entry from the SMART database.
+ meaning: edam:data_1139
+ title: SMART accession number
+ edam:data_1140:
+ text: edam:data_1140
+ description: Unique identifier (number) of a hidden Markov model from the
+ Superfamily database.
+ meaning: edam:data_1140
+ title: Superfamily hidden Markov model number
+ edam:data_1141:
+ text: edam:data_1141
+ description: Accession number of an entry (family) from the TIGRFam database.
+ meaning: edam:data_1141
+ title: TIGRFam ID
+ edam:data_1142:
+ text: edam:data_1142
+ description: A ProDom domain family accession number.
+ meaning: edam:data_1142
+ title: ProDom accession number
+ edam:data_1143:
+ text: edam:data_1143
+ description: Identifier of an entry from the TRANSFAC database.
+ meaning: edam:data_1143
+ title: TRANSFAC accession number
+ edam:data_1144:
+ text: edam:data_1144
+ description: Accession number of an entry from the ArrayExpress database.
+ meaning: edam:data_1144
+ title: ArrayExpress accession number
+ edam:data_1145:
+ text: edam:data_1145
+ description: PRIDE experiment accession number.
+ meaning: edam:data_1145
+ title: PRIDE experiment accession number
+ edam:data_1146:
+ text: edam:data_1146
+ description: Identifier of an entry from the EMDB electron microscopy database.
+ meaning: edam:data_1146
+ title: EMDB ID
+ edam:data_1147:
+ text: edam:data_1147
+ description: Accession number of an entry from the GEO database.
+ meaning: edam:data_1147
+ title: GEO accession number
+ edam:data_1148:
+ text: edam:data_1148
+ description: Identifier of an entry from the GermOnline database.
+ meaning: edam:data_1148
+ title: GermOnline ID
+ edam:data_1149:
+ text: edam:data_1149
+ description: Identifier of an entry from the EMAGE database.
+ meaning: edam:data_1149
+ title: EMAGE ID
+ edam:data_1150:
+ text: edam:data_1150
+ description: Accession number of an entry from a database of disease.
+ meaning: edam:data_1150
+ title: Disease ID
+ edam:data_1151:
+ text: edam:data_1151
+ description: Identifier of an entry from the HGVbase database.
+ meaning: edam:data_1151
+ title: HGVbase ID
+ edam:data_1153:
+ text: edam:data_1153
+ description: Identifier of an entry from the OMIM database.
+ meaning: edam:data_1153
+ title: OMIM ID
+ edam:data_1154:
+ text: edam:data_1154
+ description: Unique identifier of an object from one of the KEGG databases
+ (excluding the GENES division).
+ meaning: edam:data_1154
+ title: KEGG object identifier
+ edam:data_1155:
+ text: edam:data_1155
+ description: Identifier of an entry from the Reactome database.
+ meaning: edam:data_1155
+ title: Pathway ID (reactome)
+ edam:data_1157:
+ text: edam:data_1157
+ description: Identifier of an pathway from the BioCyc biological pathways
+ database.
+ meaning: edam:data_1157
+ title: Pathway ID (BioCyc)
+ edam:data_1158:
+ text: edam:data_1158
+ description: Identifier of an entry from the INOH database.
+ meaning: edam:data_1158
+ title: Pathway ID (INOH)
+ edam:data_1159:
+ text: edam:data_1159
+ description: Identifier of an entry from the PATIKA database.
+ meaning: edam:data_1159
+ title: Pathway ID (PATIKA)
+ edam:data_1160:
+ text: edam:data_1160
+ description: Identifier of an entry from the CPDB (ConsensusPathDB) biological
+ pathways database, which is an identifier from an external database integrated
+ into CPDB.
+ meaning: edam:data_1160
+ title: Pathway ID (CPDB)
+ edam:data_1161:
+ text: edam:data_1161
+ description: Identifier of a biological pathway from the Panther Pathways
+ database.
+ meaning: edam:data_1161
+ title: Pathway ID (Panther)
+ edam:data_1162:
+ text: edam:data_1162
+ description: Unique identifier of a MIRIAM data resource.
+ meaning: edam:data_1162
+ title: MIRIAM identifier
+ edam:data_1163:
+ text: edam:data_1163
+ description: The name of a data type from the MIRIAM database.
+ meaning: edam:data_1163
+ title: MIRIAM data type name
+ edam:data_1164:
+ text: edam:data_1164
+ description: The URI (URL or URN) of a data entity from the MIRIAM database.
+ meaning: edam:data_1164
+ title: MIRIAM URI
+ edam:data_1165:
+ text: edam:data_1165
+ description: The primary name of a data type from the MIRIAM database.
+ meaning: edam:data_1165
+ title: MIRIAM data type primary name
+ edam:data_1166:
+ text: edam:data_1166
+ description: A synonymous name of a data type from the MIRIAM database.
+ meaning: edam:data_1166
+ title: MIRIAM data type synonymous name
+ edam:data_1167:
+ text: edam:data_1167
+ description: Unique identifier of a Taverna workflow.
+ meaning: edam:data_1167
+ title: Taverna workflow ID
+ edam:data_1170:
+ text: edam:data_1170
+ description: Name of a biological (mathematical) model.
+ meaning: edam:data_1170
+ title: Biological model name
+ edam:data_1171:
+ text: edam:data_1171
+ description: Unique identifier of an entry from the BioModel database.
+ meaning: edam:data_1171
+ title: BioModel ID
+ edam:data_1172:
+ text: edam:data_1172
+ description: Chemical structure specified in PubChem Compound Identification
+ (CID), a non-zero integer identifier for a unique chemical structure.
+ meaning: edam:data_1172
+ title: PubChem CID
+ edam:data_1173:
+ text: edam:data_1173
+ description: Identifier of an entry from the ChemSpider database.
+ meaning: edam:data_1173
+ title: ChemSpider ID
+ edam:data_1174:
+ text: edam:data_1174
+ description: Identifier of an entry from the ChEBI database.
+ meaning: edam:data_1174
+ title: ChEBI ID
+ edam:data_1175:
+ text: edam:data_1175
+ description: An identifier of a concept from the BioPax ontology.
+ meaning: edam:data_1175
+ title: BioPax concept ID
+ edam:data_1176:
+ text: edam:data_1176
+ description: An identifier of a concept from The Gene Ontology.
+ meaning: edam:data_1176
+ title: GO concept ID
+ edam:data_1177:
+ text: edam:data_1177
+ description: An identifier of a concept from the MeSH vocabulary.
+ meaning: edam:data_1177
+ title: MeSH concept ID
+ edam:data_1178:
+ text: edam:data_1178
+ description: An identifier of a concept from the HGNC controlled vocabulary.
+ meaning: edam:data_1178
+ title: HGNC concept ID
+ edam:data_1179:
+ text: edam:data_1179
+ description: A stable unique identifier for each taxon (for a species, a family,
+ an order, or any other group in the NCBI taxonomy database.
+ meaning: edam:data_1179
+ title: NCBI taxonomy ID
+ edam:data_1180:
+ text: edam:data_1180
+ description: An identifier of a concept from the Plant Ontology (PO).
+ meaning: edam:data_1180
+ title: Plant Ontology concept ID
+ edam:data_1181:
+ text: edam:data_1181
+ description: An identifier of a concept from the UMLS vocabulary.
+ meaning: edam:data_1181
+ title: UMLS concept ID
+ edam:data_1182:
+ text: edam:data_1182
+ description: An identifier of a concept from Foundational Model of Anatomy.
+ meaning: edam:data_1182
+ title: FMA concept ID
+ edam:data_1183:
+ text: edam:data_1183
+ description: An identifier of a concept from the EMAP mouse ontology.
+ meaning: edam:data_1183
+ title: EMAP concept ID
+ edam:data_1184:
+ text: edam:data_1184
+ description: An identifier of a concept from the ChEBI ontology.
+ meaning: edam:data_1184
+ title: ChEBI concept ID
+ edam:data_1185:
+ text: edam:data_1185
+ description: An identifier of a concept from the MGED ontology.
+ meaning: edam:data_1185
+ title: MGED concept ID
+ edam:data_1186:
+ text: edam:data_1186
+ description: An identifier of a concept from the myGrid ontology.
+ meaning: edam:data_1186
+ title: myGrid concept ID
+ edam:data_1187:
+ text: edam:data_1187
+ description: PubMed unique identifier of an article.
+ meaning: edam:data_1187
+ title: PubMed ID
+ edam:data_1188:
+ text: edam:data_1188
+ description: Digital Object Identifier (DOI) of a published article.
+ meaning: edam:data_1188
+ title: DOI
+ edam:data_1189:
+ text: edam:data_1189
+ description: Medline UI (unique identifier) of an article.
+ meaning: edam:data_1189
+ title: Medline UI
+ edam:data_1190:
+ text: edam:data_1190
+ description: The name of a computer package, application, method or function.
+ meaning: edam:data_1190
+ title: Tool name
+ edam:data_1191:
+ text: edam:data_1191
+ description: The unique name of a signature (sequence classifier) method.
+ meaning: edam:data_1191
+ title: Tool name (signature)
+ edam:data_1192:
+ text: edam:data_1192
+ description: The name of a BLAST tool.
+ meaning: edam:data_1192
+ title: Tool name (BLAST)
+ edam:data_1193:
+ text: edam:data_1193
+ description: The name of a FASTA tool.
+ meaning: edam:data_1193
+ title: Tool name (FASTA)
+ edam:data_1194:
+ text: edam:data_1194
+ description: The name of an EMBOSS application.
+ meaning: edam:data_1194
+ title: Tool name (EMBOSS)
+ edam:data_1195:
+ text: edam:data_1195
+ description: The name of an EMBASSY package.
+ meaning: edam:data_1195
+ title: Tool name (EMBASSY package)
+ edam:data_1201:
+ text: edam:data_1201
+ description: A QSAR constitutional descriptor.
+ meaning: edam:data_1201
+ title: QSAR descriptor (constitutional)
+ edam:data_1202:
+ text: edam:data_1202
+ description: A QSAR electronic descriptor.
+ meaning: edam:data_1202
+ title: QSAR descriptor (electronic)
+ edam:data_1203:
+ text: edam:data_1203
+ description: A QSAR geometrical descriptor.
+ meaning: edam:data_1203
+ title: QSAR descriptor (geometrical)
+ edam:data_1204:
+ text: edam:data_1204
+ description: A QSAR topological descriptor.
+ meaning: edam:data_1204
+ title: QSAR descriptor (topological)
+ edam:data_1205:
+ text: edam:data_1205
+ description: A QSAR molecular descriptor.
+ meaning: edam:data_1205
+ title: QSAR descriptor (molecular)
+ edam:data_1233:
+ text: edam:data_1233
+ description: Any collection of multiple protein sequences and associated metadata
+ that do not (typically) correspond to common sequence database records or
+ database entries.
+ meaning: edam:data_1233
+ title: Sequence set (protein)
+ edam:data_1234:
+ text: edam:data_1234
+ description: Any collection of multiple nucleotide sequences and associated
+ metadata that do not (typically) correspond to common sequence database
+ records or database entries.
+ meaning: edam:data_1234
+ title: Sequence set (nucleic acid)
+ edam:data_1235:
+ text: edam:data_1235
+ description: A set of sequences that have been clustered or otherwise classified
+ as belonging to a group including (typically) sequence cluster information.
+ meaning: edam:data_1235
+ title: Sequence cluster
+ edam:data_1238:
+ text: edam:data_1238
+ description: A protein sequence cleaved into peptide fragments (by enzymatic
+ or chemical cleavage) with fragment masses.
+ meaning: edam:data_1238
+ title: Proteolytic digest
+ edam:data_1239:
+ text: edam:data_1239
+ description: Restriction digest fragments from digesting a nucleotide sequence
+ with restriction sites using a restriction endonuclease.
+ meaning: edam:data_1239
+ title: Restriction digest
+ edam:data_1240:
+ text: edam:data_1240
+ description: Oligonucleotide primer(s) for PCR and DNA amplification, for
+ example a minimal primer set.
+ meaning: edam:data_1240
+ title: PCR primers
+ edam:data_1245:
+ text: edam:data_1245
+ description: A cluster of protein sequences.
+ meaning: edam:data_1245
+ title: Sequence cluster (protein)
+ edam:data_1246:
+ text: edam:data_1246
+ description: A cluster of nucleotide sequences.
+ meaning: edam:data_1246
+ title: Sequence cluster (nucleic acid)
+ edam:data_1249:
+ text: edam:data_1249
+ description: The size (length) of a sequence, subsequence or region in a sequence,
+ or range(s) of lengths.
+ meaning: edam:data_1249
+ title: Sequence length
+ edam:data_1254:
+ text: edam:data_1254
+ description: An informative report about non-positional sequence features,
+ typically a report on general molecular sequence properties derived from
+ sequence analysis.
+ meaning: edam:data_1254
+ title: Sequence property
+ edam:data_1255:
+ text: edam:data_1255
+ description: Annotation of positional features of molecular sequence(s), i.e.
+ that can be mapped to position(s) in the sequence.
+ meaning: edam:data_1255
+ title: Sequence features
+ edam:data_1259:
+ text: edam:data_1259
+ description: A report on sequence complexity, for example low-complexity or
+ repeat regions in sequences.
+ meaning: edam:data_1259
+ title: Sequence complexity report
+ edam:data_1260:
+ text: edam:data_1260
+ description: A report on ambiguity in molecular sequence(s).
+ meaning: edam:data_1260
+ title: Sequence ambiguity report
+ edam:data_1261:
+ text: edam:data_1261
+ description: A report (typically a table) on character or word composition
+ / frequency of a molecular sequence(s).
+ meaning: edam:data_1261
+ title: Sequence composition report
+ edam:data_1262:
+ text: edam:data_1262
+ description: A report on peptide fragments of certain molecular weight(s)
+ in one or more protein sequences.
+ meaning: edam:data_1262
+ title: Peptide molecular weight hits
+ edam:data_1263:
+ text: edam:data_1263
+ description: A plot of third base position variability in a nucleotide sequence.
+ meaning: edam:data_1263
+ title: Base position variability plot
+ edam:data_1265:
+ text: edam:data_1265
+ description: A table of base frequencies of a nucleotide sequence.
+ meaning: edam:data_1265
+ title: Base frequencies table
+ edam:data_1266:
+ text: edam:data_1266
+ description: A table of word composition of a nucleotide sequence.
+ meaning: edam:data_1266
+ title: Base word frequencies table
+ edam:data_1267:
+ text: edam:data_1267
+ description: A table of amino acid frequencies of a protein sequence.
+ meaning: edam:data_1267
+ title: Amino acid frequencies table
+ edam:data_1268:
+ text: edam:data_1268
+ description: A table of amino acid word composition of a protein sequence.
+ meaning: edam:data_1268
+ title: Amino acid word frequencies table
+ edam:data_1270:
+ text: edam:data_1270
+ description: Annotation of positional sequence features, organised into a
+ standard feature table.
+ meaning: edam:data_1270
+ title: Feature table
+ edam:data_1274:
+ text: edam:data_1274
+ description: A map of (typically one) DNA sequence annotated with positional
+ or non-positional features.
+ meaning: edam:data_1274
+ title: Map
+ edam:data_1276:
+ text: edam:data_1276
+ description: An informative report on intrinsic positional features of a nucleotide
+ sequence, formatted to be machine-readable.
+ meaning: edam:data_1276
+ title: Nucleic acid features
+ edam:data_1277:
+ text: edam:data_1277
+ description: An informative report on intrinsic positional features of a protein
+ sequence.
+ meaning: edam:data_1277
+ title: Protein features
+ edam:data_1278:
+ text: edam:data_1278
+ description: A map showing the relative positions of genetic markers in a
+ nucleic acid sequence, based on estimation of non-physical distance such
+ as recombination frequencies.
+ meaning: edam:data_1278
+ title: Genetic map
+ edam:data_1279:
+ text: edam:data_1279
+ description: A map of genetic markers in a contiguous, assembled genomic sequence,
+ with the sizes and separation of markers measured in base pairs.
+ meaning: edam:data_1279
+ title: Sequence map
+ edam:data_1280:
+ text: edam:data_1280
+ description: A map of DNA (linear or circular) annotated with physical features
+ or landmarks such as restriction sites, cloned DNA fragments, genes or genetic
+ markers, along with the physical distances between them.
+ meaning: edam:data_1280
+ title: Physical map
+ edam:data_1283:
+ text: edam:data_1283
+ description: A map showing banding patterns derived from direct observation
+ of a stained chromosome.
+ meaning: edam:data_1283
+ title: Cytogenetic map
+ edam:data_1284:
+ text: edam:data_1284
+ description: A gene map showing distances between loci based on relative cotransduction
+ frequencies.
+ meaning: edam:data_1284
+ title: DNA transduction map
+ edam:data_1285:
+ text: edam:data_1285
+ description: Sequence map of a single gene annotated with genetic features
+ such as introns, exons, untranslated regions, polyA signals, promoters,
+ enhancers and (possibly) mutations defining alleles of a gene.
+ meaning: edam:data_1285
+ title: Gene map
+ edam:data_1286:
+ text: edam:data_1286
+ description: Sequence map of a plasmid (circular DNA).
+ meaning: edam:data_1286
+ title: Plasmid map
+ edam:data_1288:
+ text: edam:data_1288
+ description: Sequence map of a whole genome.
+ meaning: edam:data_1288
+ title: Genome map
+ edam:data_1289:
+ text: edam:data_1289
+ description: Image of the restriction enzyme cleavage sites (restriction sites)
+ in a nucleic acid sequence.
+ meaning: edam:data_1289
+ title: Restriction map
+ edam:data_1347:
+ text: edam:data_1347
+ description: Dirichlet distribution used by hidden Markov model analysis programs.
+ meaning: edam:data_1347
+ title: Dirichlet distribution
+ edam:data_1352:
+ text: edam:data_1352
+ description: Regular expression pattern.
+ meaning: edam:data_1352
+ title: Regular expression
+ edam:data_1353:
+ text: edam:data_1353
+ description: Any specific or conserved pattern (typically expressed as a regular
+ expression) in a molecular sequence.
+ meaning: edam:data_1353
+ title: Sequence motif
+ edam:data_1354:
+ text: edam:data_1354
+ description: Some type of statistical model representing a (typically multiple)
+ sequence alignment.
+ meaning: edam:data_1354
+ title: Sequence profile
+ edam:data_1355:
+ text: edam:data_1355
+ description: An informative report about a specific or conserved protein sequence
+ pattern.
+ meaning: edam:data_1355
+ title: Protein signature
+ edam:data_1361:
+ text: edam:data_1361
+ description: A profile (typically representing a sequence alignment) that
+ is a simple matrix of nucleotide (or amino acid) counts per position.
+ meaning: edam:data_1361
+ title: Position frequency matrix
+ edam:data_1362:
+ text: edam:data_1362
+ description: A profile (typically representing a sequence alignment) that
+ is weighted matrix of nucleotide (or amino acid) counts per position.
+ meaning: edam:data_1362
+ title: Position weight matrix
+ edam:data_1363:
+ text: edam:data_1363
+ description: A profile (typically representing a sequence alignment) derived
+ from a matrix of nucleotide (or amino acid) counts per position that reflects
+ information content at each position.
+ meaning: edam:data_1363
+ title: Information content matrix
+ edam:data_1364:
+ text: edam:data_1364
+ description: A statistical Markov model of a system which is assumed to be
+ a Markov process with unobserved (hidden) states. For example, a hidden
+ Markov model representation of a set or alignment of sequences.
+ meaning: edam:data_1364
+ title: Hidden Markov model
+ edam:data_1365:
+ text: edam:data_1365
+ description: One or more fingerprints (sequence classifiers) as used in the
+ PRINTS database.
+ meaning: edam:data_1365
+ title: Fingerprint
+ edam:data_1381:
+ text: edam:data_1381
+ description: Alignment of exactly two molecular sequences.
+ meaning: edam:data_1381
+ title: Pair sequence alignment
+ edam:data_1383:
+ text: edam:data_1383
+ description: Alignment of multiple nucleotide sequences.
+ meaning: edam:data_1383
+ title: Nucleic acid sequence alignment
+ edam:data_1384:
+ text: edam:data_1384
+ description: Alignment of multiple protein sequences.
+ meaning: edam:data_1384
+ title: Protein sequence alignment
+ edam:data_1385:
+ text: edam:data_1385
+ description: Alignment of multiple molecular sequences of different types.
+ meaning: edam:data_1385
+ title: Hybrid sequence alignment
+ edam:data_1394:
+ text: edam:data_1394
+ description: A simple floating point number defining the penalty for opening
+ or extending a gap in an alignment.
+ meaning: edam:data_1394
+ title: Alignment score or penalty
+ edam:data_1397:
+ text: edam:data_1397
+ description: A penalty for opening a gap in an alignment.
+ meaning: edam:data_1397
+ title: Gap opening penalty
+ edam:data_1398:
+ text: edam:data_1398
+ description: A penalty for extending a gap in an alignment.
+ meaning: edam:data_1398
+ title: Gap extension penalty
+ edam:data_1399:
+ text: edam:data_1399
+ description: A penalty for gaps that are close together in an alignment.
+ meaning: edam:data_1399
+ title: Gap separation penalty
+ edam:data_1401:
+ text: edam:data_1401
+ description: The score for a 'match' used in various sequence database search
+ applications with simple scoring schemes.
+ meaning: edam:data_1401
+ title: Match reward score
+ edam:data_1402:
+ text: edam:data_1402
+ description: The score (penalty) for a 'mismatch' used in various alignment
+ and sequence database search applications with simple scoring schemes.
+ meaning: edam:data_1402
+ title: Mismatch penalty score
+ edam:data_1403:
+ text: edam:data_1403
+ description: This is the threshold drop in score at which extension of word
+ alignment is halted.
+ meaning: edam:data_1403
+ title: Drop off score
+ edam:data_1410:
+ text: edam:data_1410
+ description: A number defining the penalty for opening gaps at the termini
+ of an alignment, either from the N/C terminal of protein or 5'/3' terminal
+ of nucleotide sequences.
+ meaning: edam:data_1410
+ title: Terminal gap opening penalty
+ edam:data_1411:
+ text: edam:data_1411
+ description: A number defining the penalty for extending gaps at the termini
+ of an alignment, either from the N/C terminal of protein or 5'/3' terminal
+ of nucleotide sequences.
+ meaning: edam:data_1411
+ title: Terminal gap extension penalty
+ edam:data_1412:
+ text: edam:data_1412
+ description: Sequence identity is the number (%) of matches (identical characters)
+ in positions from an alignment of two molecular sequences.
+ meaning: edam:data_1412
+ title: Sequence identity
+ edam:data_1413:
+ text: edam:data_1413
+ description: Sequence similarity is the similarity (expressed as a percentage)
+ of two molecular sequences calculated from their alignment, a scoring matrix
+ for scoring characters substitutions and penalties for gap insertion and
+ extension.
+ meaning: edam:data_1413
+ title: Sequence similarity
+ edam:data_1426:
+ text: edam:data_1426
+ description: Continuous quantitative data that may be read during phylogenetic
+ tree calculation.
+ meaning: edam:data_1426
+ title: Phylogenetic continuous quantitative data
+ edam:data_1427:
+ text: edam:data_1427
+ description: Character data with discrete states that may be read during phylogenetic
+ tree calculation.
+ meaning: edam:data_1427
+ title: Phylogenetic discrete data
+ edam:data_1428:
+ text: edam:data_1428
+ description: One or more cliques of mutually compatible characters that are
+ generated, for example from analysis of discrete character data, and are
+ used to generate a phylogeny.
+ meaning: edam:data_1428
+ title: Phylogenetic character cliques
+ edam:data_1429:
+ text: edam:data_1429
+ description: Phylogenetic invariants data for testing alternative tree topologies.
+ meaning: edam:data_1429
+ title: Phylogenetic invariants
+ edam:data_1439:
+ text: edam:data_1439
+ description: A model of DNA substitution that explains a DNA sequence alignment,
+ derived from phylogenetic tree analysis.
+ meaning: edam:data_1439
+ title: DNA substitution model
+ edam:data_1442:
+ text: edam:data_1442
+ description: Distances, such as Branch Score distance, between two or more
+ phylogenetic trees.
+ meaning: edam:data_1442
+ title: Phylogenetic tree distances
+ edam:data_1444:
+ text: edam:data_1444
+ description: Independent contrasts for characters used in a phylogenetic tree,
+ or covariances, regressions and correlations between characters for those
+ contrasts.
+ meaning: edam:data_1444
+ title: Phylogenetic character contrasts
+ edam:data_1448:
+ text: edam:data_1448
+ description: Matrix of integer or floating point numbers for nucleotide comparison.
+ meaning: edam:data_1448
+ title: Comparison matrix (nucleotide)
+ edam:data_1449:
+ text: edam:data_1449
+ description: Matrix of integer or floating point numbers for amino acid comparison.
+ meaning: edam:data_1449
+ title: Comparison matrix (amino acid)
+ edam:data_1459:
+ text: edam:data_1459
+ description: 3D coordinate and associated data for a nucleic acid tertiary
+ (3D) structure.
+ meaning: edam:data_1459
+ title: Nucleic acid structure
+ edam:data_1460:
+ text: edam:data_1460
+ description: 3D coordinate and associated data for a protein tertiary (3D)
+ structure, or part of a structure, possibly in complex with other molecules.
+ meaning: edam:data_1460
+ title: Protein structure
+ edam:data_1461:
+ text: edam:data_1461
+ description: The structure of a protein in complex with a ligand, typically
+ a small molecule such as an enzyme substrate or cofactor, but possibly another
+ macromolecule.
+ meaning: edam:data_1461
+ title: Protein-ligand complex
+ edam:data_1462:
+ text: edam:data_1462
+ description: 3D coordinate and associated data for a carbohydrate (3D) structure.
+ meaning: edam:data_1462
+ title: Carbohydrate structure
+ edam:data_1463:
+ text: edam:data_1463
+ description: 3D coordinate and associated data for the (3D) structure of a
+ small molecule, such as any common chemical compound.
+ meaning: edam:data_1463
+ title: Small molecule structure
+ edam:data_1464:
+ text: edam:data_1464
+ description: 3D coordinate and associated data for a DNA tertiary (3D) structure.
+ meaning: edam:data_1464
+ title: DNA structure
+ edam:data_1465:
+ text: edam:data_1465
+ description: 3D coordinate and associated data for an RNA tertiary (3D) structure.
+ meaning: edam:data_1465
+ title: RNA structure
+ edam:data_1466:
+ text: edam:data_1466
+ description: 3D coordinate and associated data for a tRNA tertiary (3D) structure,
+ including tmRNA, snoRNAs etc.
+ meaning: edam:data_1466
+ title: tRNA structure
+ edam:data_1467:
+ text: edam:data_1467
+ description: 3D coordinate and associated data for the tertiary (3D) structure
+ of a polypeptide chain.
+ meaning: edam:data_1467
+ title: Protein chain
+ edam:data_1468:
+ text: edam:data_1468
+ description: 3D coordinate and associated data for the tertiary (3D) structure
+ of a protein domain.
+ meaning: edam:data_1468
+ title: Protein domain
+ edam:data_1470:
+ text: edam:data_1470
+ description: 3D coordinate and associated data for a protein tertiary (3D)
+ structure (typically C-alpha atoms only).
+ meaning: edam:data_1470
+ title: C-alpha trace
+ edam:data_1479:
+ text: edam:data_1479
+ description: Alignment (superimposition) of exactly two molecular tertiary
+ (3D) structures.
+ meaning: edam:data_1479
+ title: Structure alignment (pair)
+ edam:data_1481:
+ text: edam:data_1481
+ description: Alignment (superimposition) of protein tertiary (3D) structures.
+ meaning: edam:data_1481
+ title: Protein structure alignment
+ edam:data_1482:
+ text: edam:data_1482
+ description: Alignment (superimposition) of nucleic acid tertiary (3D) structures.
+ meaning: edam:data_1482
+ title: Nucleic acid structure alignment
+ edam:data_1493:
+ text: edam:data_1493
+ description: Alignment (superimposition) of RNA tertiary (3D) structures.
+ meaning: edam:data_1493
+ title: RNA structure alignment
+ edam:data_1494:
+ text: edam:data_1494
+ description: Matrix to transform (rotate/translate) 3D coordinates, typically
+ the transformation necessary to superimpose two molecular structures.
+ meaning: edam:data_1494
+ title: Structural transformation matrix
+ edam:data_1497:
+ text: edam:data_1497
+ description: Root-mean-square deviation (RMSD) is calculated to measure the
+ average distance between superimposed macromolecular coordinates.
+ meaning: edam:data_1497
+ title: Root-mean-square deviation
+ edam:data_1498:
+ text: edam:data_1498
+ description: A measure of the similarity between two ligand fingerprints.
+ meaning: edam:data_1498
+ title: Tanimoto similarity score
+ edam:data_1499:
+ text: edam:data_1499
+ description: A matrix of 3D-1D scores reflecting the probability of amino
+ acids to occur in different tertiary structural environments.
+ meaning: edam:data_1499
+ title: 3D-1D scoring matrix
+ edam:data_1501:
+ text: edam:data_1501
+ description: A table of 20 numerical values which quantify a property (e.g.
+ physicochemical or biochemical) of the common amino acids.
+ meaning: edam:data_1501
+ title: Amino acid index
+ edam:data_1502:
+ text: edam:data_1502
+ description: Chemical classification (small, aliphatic, aromatic, polar, charged
+ etc) of amino acids.
+ meaning: edam:data_1502
+ title: Amino acid index (chemical classes)
+ edam:data_1503:
+ text: edam:data_1503
+ description: Statistical protein contact potentials.
+ meaning: edam:data_1503
+ title: Amino acid pair-wise contact potentials
+ edam:data_1505:
+ text: edam:data_1505
+ description: Molecular weights of amino acids.
+ meaning: edam:data_1505
+ title: Amino acid index (molecular weight)
+ edam:data_1506:
+ text: edam:data_1506
+ description: Hydrophobic, hydrophilic or charge properties of amino acids.
+ meaning: edam:data_1506
+ title: Amino acid index (hydropathy)
+ edam:data_1507:
+ text: edam:data_1507
+ description: Experimental free energy values for the water-interface and water-octanol
+ transitions for the amino acids.
+ meaning: edam:data_1507
+ title: Amino acid index (White-Wimley data)
+ edam:data_1508:
+ text: edam:data_1508
+ description: Van der Waals radii of atoms for different amino acid residues.
+ meaning: edam:data_1508
+ title: Amino acid index (van der Waals radii)
+ edam:data_1519:
+ text: edam:data_1519
+ description: List of molecular weight(s) of one or more proteins or peptides,
+ for example cut by proteolytic enzymes or reagents.
+ meaning: edam:data_1519
+ title: Peptide molecular weights
+ edam:data_1520:
+ text: edam:data_1520
+ description: Report on the hydrophobic moment of a polypeptide sequence.
+ meaning: edam:data_1520
+ title: Peptide hydrophobic moment
+ edam:data_1521:
+ text: edam:data_1521
+ description: The aliphatic index of a protein.
+ meaning: edam:data_1521
+ title: Protein aliphatic index
+ edam:data_1522:
+ text: edam:data_1522
+ description: A protein sequence with annotation on hydrophobic or hydrophilic
+ / charged regions, hydrophobicity plot etc.
+ meaning: edam:data_1522
+ title: Protein sequence hydropathy plot
+ edam:data_1523:
+ text: edam:data_1523
+ description: A plot of the mean charge of the amino acids within a window
+ of specified length as the window is moved along a protein sequence.
+ meaning: edam:data_1523
+ title: Protein charge plot
+ edam:data_1524:
+ text: edam:data_1524
+ description: The solubility or atomic solvation energy of a protein sequence
+ or structure.
+ meaning: edam:data_1524
+ title: Protein solubility
+ edam:data_1525:
+ text: edam:data_1525
+ description: Data on the crystallizability of a protein sequence.
+ meaning: edam:data_1525
+ title: Protein crystallizability
+ edam:data_1526:
+ text: edam:data_1526
+ description: Data on the stability, intrinsic disorder or globularity of a
+ protein sequence.
+ meaning: edam:data_1526
+ title: Protein globularity
+ edam:data_1527:
+ text: edam:data_1527
+ description: The titration curve of a protein.
+ meaning: edam:data_1527
+ title: Protein titration curve
+ edam:data_1528:
+ text: edam:data_1528
+ description: The isoelectric point of one proteins.
+ meaning: edam:data_1528
+ title: Protein isoelectric point
+ edam:data_1529:
+ text: edam:data_1529
+ description: The pKa value of a protein.
+ meaning: edam:data_1529
+ title: Protein pKa value
+ edam:data_1530:
+ text: edam:data_1530
+ description: The hydrogen exchange rate of a protein.
+ meaning: edam:data_1530
+ title: Protein hydrogen exchange rate
+ edam:data_1531:
+ text: edam:data_1531
+ description: The extinction coefficient of a protein.
+ meaning: edam:data_1531
+ title: Protein extinction coefficient
+ edam:data_1532:
+ text: edam:data_1532
+ description: The optical density of a protein.
+ meaning: edam:data_1532
+ title: Protein optical density
+ edam:data_1534:
+ text: edam:data_1534
+ description: An report on allergenicity / immunogenicity of peptides and proteins.
+ meaning: edam:data_1534
+ title: Peptide immunogenicity data
+ edam:data_1537:
+ text: edam:data_1537
+ description: A human-readable collection of information about one or more
+ specific protein 3D structure(s) or structural domains.
+ meaning: edam:data_1537
+ title: Protein structure report
+ edam:data_1539:
+ text: edam:data_1539
+ description: Report on the quality of a protein three-dimensional model.
+ meaning: edam:data_1539
+ title: Protein structural quality report
+ edam:data_1542:
+ text: edam:data_1542
+ description: Data on the solvent accessible or buried surface area of a protein
+ structure.
+ meaning: edam:data_1542
+ title: Protein solvent accessibility
+ edam:data_1544:
+ text: edam:data_1544
+ description: Phi/psi angle data or a Ramachandran plot of a protein structure.
+ meaning: edam:data_1544
+ title: Ramachandran plot
+ edam:data_1545:
+ text: edam:data_1545
+ description: Data on the net charge distribution (dipole moment) of a protein
+ structure.
+ meaning: edam:data_1545
+ title: Protein dipole moment
+ edam:data_1546:
+ text: edam:data_1546
+ description: A matrix of distances between amino acid residues (for example
+ the C-alpha atoms) in a protein structure.
+ meaning: edam:data_1546
+ title: Protein distance matrix
+ edam:data_1547:
+ text: edam:data_1547
+ description: An amino acid residue contact map for a protein structure.
+ meaning: edam:data_1547
+ title: Protein contact map
+ edam:data_1548:
+ text: edam:data_1548
+ description: Report on clusters of contacting residues in protein structures
+ such as a key structural residue network.
+ meaning: edam:data_1548
+ title: Protein residue 3D cluster
+ edam:data_1549:
+ text: edam:data_1549
+ description: Patterns of hydrogen bonding in protein structures.
+ meaning: edam:data_1549
+ title: Protein hydrogen bonds
+ edam:data_1566:
+ text: edam:data_1566
+ description: An informative report on protein-ligand (small molecule) interaction(s).
+ meaning: edam:data_1566
+ title: Protein-ligand interaction report
+ edam:data_1583:
+ text: edam:data_1583
+ description: Data on the dissociation characteristics of a double-stranded
+ nucleic acid molecule (DNA or a DNA/RNA hybrid) during heating.
+ meaning: edam:data_1583
+ title: Nucleic acid melting profile
+ edam:data_1584:
+ text: edam:data_1584
+ description: Enthalpy of hybridised or double stranded nucleic acid (DNA or
+ RNA/DNA).
+ meaning: edam:data_1584
+ title: Nucleic acid enthalpy
+ edam:data_1585:
+ text: edam:data_1585
+ description: Entropy of hybridised or double stranded nucleic acid (DNA or
+ RNA/DNA).
+ meaning: edam:data_1585
+ title: Nucleic acid entropy
+ edam:data_1588:
+ text: edam:data_1588
+ description: DNA base pair stacking energies data.
+ meaning: edam:data_1588
+ title: DNA base pair stacking energies data
+ edam:data_1589:
+ text: edam:data_1589
+ description: DNA base pair twist angle data.
+ meaning: edam:data_1589
+ title: DNA base pair twist angle data
+ edam:data_1590:
+ text: edam:data_1590
+ description: DNA base trimer roll angles data.
+ meaning: edam:data_1590
+ title: DNA base trimer roll angles data
+ edam:data_1595:
+ text: edam:data_1595
+ description: Dotplot of RNA base pairing probability matrix.
+ meaning: edam:data_1595
+ title: Base pairing probability matrix dotplot
+ edam:data_1596:
+ text: edam:data_1596
+ description: A human-readable collection of information about RNA/DNA folding,
+ minimum folding energies for DNA or RNA sequences, energy landscape of RNA
+ mutants etc.
+ meaning: edam:data_1596
+ title: Nucleic acid folding report
+ edam:data_1597:
+ text: edam:data_1597
+ description: Table of codon usage data calculated from one or more nucleic
+ acid sequences.
+ meaning: edam:data_1597
+ title: Codon usage table
+ edam:data_1598:
+ text: edam:data_1598
+ description: A genetic code for an organism.
+ meaning: edam:data_1598
+ title: Genetic code
+ edam:data_1600:
+ text: edam:data_1600
+ description: A plot of the synonymous codon usage calculated for windows over
+ a nucleotide sequence.
+ meaning: edam:data_1600
+ title: Codon usage bias plot
+ edam:data_1602:
+ text: edam:data_1602
+ description: The differences in codon usage fractions between two codon usage
+ tables.
+ meaning: edam:data_1602
+ title: Codon usage fraction difference
+ edam:data_1621:
+ text: edam:data_1621
+ description: A human-readable collection of information about the influence
+ of genotype on drug response.
+ meaning: edam:data_1621
+ title: Pharmacogenomic test report
+ edam:data_1622:
+ text: edam:data_1622
+ description: A human-readable collection of information about a specific disease.
+ meaning: edam:data_1622
+ title: Disease report
+ edam:data_1636:
+ text: edam:data_1636
+ description: A graphical 2D tabular representation of expression data, typically
+ derived from an omics experiment. A heat map is a table where rows and columns
+ correspond to different features and contexts (for example, cells or samples)
+ and the cell colour represents the level of expression of a gene that context.
+ meaning: edam:data_1636
+ title: Heat map
+ edam:data_1667:
+ text: edam:data_1667
+ description: A simple floating point number defining the lower or upper limit
+ of an expectation value (E-value).
+ meaning: edam:data_1667
+ title: E-value
+ edam:data_1668:
+ text: edam:data_1668
+ description: The z-value is the number of standard deviations a data value
+ is above or below a mean value.
+ meaning: edam:data_1668
+ title: Z-value
+ edam:data_1669:
+ text: edam:data_1669
+ description: The P-value is the probability of obtaining by random chance
+ a result that is at least as extreme as an observed result, assuming a NULL
+ hypothesis is true.
+ meaning: edam:data_1669
+ title: P-value
+ edam:data_1689:
+ text: edam:data_1689
+ description: A username on a computer system or a website.
+ meaning: edam:data_1689
+ title: Username
+ edam:data_1690:
+ text: edam:data_1690
+ description: A password on a computer system, or a website.
+ meaning: edam:data_1690
+ title: Password
+ edam:data_1691:
+ text: edam:data_1691
+ description: A valid email address of an end-user.
+ meaning: edam:data_1691
+ title: Email address
+ edam:data_1692:
+ text: edam:data_1692
+ description: The name of a person.
+ meaning: edam:data_1692
+ title: Person name
+ edam:data_1696:
+ text: edam:data_1696
+ description: A human-readable collection of information about a specific drug.
+ meaning: edam:data_1696
+ title: Drug report
+ edam:data_1707:
+ text: edam:data_1707
+ description: An image (for viewing or printing) of a phylogenetic tree including
+ (typically) a plot of rooted or unrooted phylogenies, cladograms, circular
+ trees or phenograms and associated information.
+ meaning: edam:data_1707
+ title: Phylogenetic tree image
+ edam:data_1708:
+ text: edam:data_1708
+ description: Image of RNA secondary structure, knots, pseudoknots etc.
+ meaning: edam:data_1708
+ title: RNA secondary structure image
+ edam:data_1709:
+ text: edam:data_1709
+ description: Image of protein secondary structure.
+ meaning: edam:data_1709
+ title: Protein secondary structure image
+ edam:data_1710:
+ text: edam:data_1710
+ description: Image of one or more molecular tertiary (3D) structures.
+ meaning: edam:data_1710
+ title: Structure image
+ edam:data_1711:
+ text: edam:data_1711
+ description: Image of two or more aligned molecular sequences possibly annotated
+ with alignment features.
+ meaning: edam:data_1711
+ title: Sequence alignment image
+ edam:data_1712:
+ text: edam:data_1712
+ description: An image of the structure of a small chemical compound.
+ meaning: edam:data_1712
+ title: Chemical structure image
+ edam:data_1713:
+ text: edam:data_1713
+ description: A fate map is a plan of early stage of an embryo such as a blastula,
+ showing areas that are significance to development.
+ meaning: edam:data_1713
+ title: Fate map
+ edam:data_1714:
+ text: edam:data_1714
+ description: An image of spots from a microarray experiment.
+ meaning: edam:data_1714
+ title: Microarray spots image
+ edam:data_1731:
+ text: edam:data_1731
+ description: The definition of a concept from an ontology.
+ meaning: edam:data_1731
+ title: Ontology concept definition
+ edam:data_1742:
+ text: edam:data_1742
+ description: A residue identifier (a string) from a PDB file.
+ meaning: edam:data_1742
+ title: PDB residue number
+ edam:data_1743:
+ text: edam:data_1743
+ description: Cartesian coordinate of an atom (in a molecular structure).
+ meaning: edam:data_1743
+ title: Atomic coordinate
+ edam:data_1748:
+ text: edam:data_1748
+ description: Identifier (a string) of a specific atom from a PDB file for
+ a molecular structure.
+ meaning: edam:data_1748
+ title: PDB atom name
+ edam:data_1755:
+ text: edam:data_1755
+ description: Data on a single atom from a protein structure.
+ meaning: edam:data_1755
+ title: Protein atom
+ edam:data_1756:
+ text: edam:data_1756
+ description: Data on a single amino acid residue position in a protein structure.
+ meaning: edam:data_1756
+ title: Protein residue
+ edam:data_1757:
+ text: edam:data_1757
+ description: Name of an atom.
+ meaning: edam:data_1757
+ title: Atom name
+ edam:data_1758:
+ text: edam:data_1758
+ description: Three-letter amino acid residue names as used in PDB files.
+ meaning: edam:data_1758
+ title: PDB residue name
+ edam:data_1759:
+ text: edam:data_1759
+ description: Identifier of a model structure from a PDB file.
+ meaning: edam:data_1759
+ title: PDB model number
+ edam:data_1771:
+ text: edam:data_1771
+ description: Information on an molecular sequence version.
+ meaning: edam:data_1771
+ title: Sequence version
+ edam:data_1772:
+ text: edam:data_1772
+ description: A numerical value, that is some type of scored value arising
+ for example from a prediction method.
+ meaning: edam:data_1772
+ title: Score
+ edam:data_1794:
+ text: edam:data_1794
+ description: Identifier of a gene from PlasmoDB Plasmodium Genome Resource.
+ meaning: edam:data_1794
+ title: Gene ID (PlasmoDB)
+ edam:data_1795:
+ text: edam:data_1795
+ description: Identifier of a gene from EcoGene Database.
+ meaning: edam:data_1795
+ title: Gene ID (EcoGene)
+ edam:data_1796:
+ text: edam:data_1796
+ description: Gene identifier from FlyBase database.
+ meaning: edam:data_1796
+ title: Gene ID (FlyBase)
+ edam:data_1802:
+ text: edam:data_1802
+ description: Gene identifier from Gramene database.
+ meaning: edam:data_1802
+ title: Gene ID (Gramene)
+ edam:data_1803:
+ text: edam:data_1803
+ description: Gene identifier from Virginia Bioinformatics Institute microbial
+ database.
+ meaning: edam:data_1803
+ title: Gene ID (Virginia microbial)
+ edam:data_1804:
+ text: edam:data_1804
+ description: Gene identifier from Sol Genomics Network.
+ meaning: edam:data_1804
+ title: Gene ID (SGN)
+ edam:data_1805:
+ text: edam:data_1805
+ description: Gene identifier used by WormBase database.
+ meaning: edam:data_1805
+ title: Gene ID (WormBase)
+ edam:data_1807:
+ text: edam:data_1807
+ description: The name of an open reading frame attributed by a sequencing
+ project.
+ meaning: edam:data_1807
+ title: ORF name
+ edam:data_1855:
+ text: edam:data_1855
+ description: An identifier of a clone (cloned molecular sequence) from a database.
+ meaning: edam:data_1855
+ title: Clone ID
+ edam:data_1856:
+ text: edam:data_1856
+ description: An insertion code (part of the residue number) for an amino acid
+ residue from a PDB file.
+ meaning: edam:data_1856
+ title: PDB insertion code
+ edam:data_1857:
+ text: edam:data_1857
+ description: The fraction of an atom type present at a site in a molecular
+ structure.
+ meaning: edam:data_1857
+ title: Atomic occupancy
+ edam:data_1858:
+ text: edam:data_1858
+ description: Isotropic B factor (atomic displacement parameter) for an atom
+ from a PDB file.
+ meaning: edam:data_1858
+ title: Isotropic B factor
+ edam:data_1859:
+ text: edam:data_1859
+ description: A cytogenetic map showing chromosome banding patterns in mutant
+ cell lines relative to the wild type.
+ meaning: edam:data_1859
+ title: Deletion map
+ edam:data_1860:
+ text: edam:data_1860
+ description: A genetic map which shows the approximate location of quantitative
+ trait loci (QTL) between two or more markers.
+ meaning: edam:data_1860
+ title: QTL map
+ edam:data_1863:
+ text: edam:data_1863
+ description: A map of haplotypes in a genome or other sequence, describing
+ common patterns of genetic variation.
+ meaning: edam:data_1863
+ title: Haplotype map
+ edam:data_1867:
+ text: edam:data_1867
+ description: The name of a protein fold.
+ meaning: edam:data_1867
+ title: Protein fold name
+ edam:data_1868:
+ text: edam:data_1868
+ description: The name of a group of organisms belonging to the same taxonomic
+ rank.
+ meaning: edam:data_1868
+ title: Taxon
+ edam:data_1869:
+ text: edam:data_1869
+ description: A unique identifier of a (group of) organisms.
+ meaning: edam:data_1869
+ title: Organism identifier
+ edam:data_1870:
+ text: edam:data_1870
+ description: The name of a genus of organism.
+ meaning: edam:data_1870
+ title: Genus name
+ edam:data_1872:
+ text: edam:data_1872
+ description: The full name for a group of organisms, reflecting their biological
+ classification and (usually) conforming to a standard nomenclature.
+ meaning: edam:data_1872
+ title: Taxonomic classification
+ edam:data_1873:
+ text: edam:data_1873
+ description: A unique identifier for an organism used in the iHOP database.
+ meaning: edam:data_1873
+ title: iHOP organism ID
+ edam:data_1874:
+ text: edam:data_1874
+ description: Common name for an organism as used in the GenBank database.
+ meaning: edam:data_1874
+ title: Genbank common name
+ edam:data_1875:
+ text: edam:data_1875
+ description: The name of a taxon from the NCBI taxonomy database.
+ meaning: edam:data_1875
+ title: NCBI taxon
+ edam:data_1881:
+ text: edam:data_1881
+ description: Information on the authors of a published work.
+ meaning: edam:data_1881
+ title: Author ID
+ edam:data_1882:
+ text: edam:data_1882
+ description: An identifier representing an author in the DragonDB database.
+ meaning: edam:data_1882
+ title: DragonDB author identifier
+ edam:data_1883:
+ text: edam:data_1883
+ description: A URI along with annotation describing the data found at the
+ address.
+ meaning: edam:data_1883
+ title: Annotated URI
+ edam:data_1885:
+ text: edam:data_1885
+ description: Identifier of a gene from the GeneFarm database.
+ meaning: edam:data_1885
+ title: Gene ID (GeneFarm)
+ edam:data_1886:
+ text: edam:data_1886
+ description: The blattner identifier for a gene.
+ meaning: edam:data_1886
+ title: Blattner number
+ edam:data_1891:
+ text: edam:data_1891
+ description: A unique identifier of a protein or gene used in the iHOP database.
+ meaning: edam:data_1891
+ title: iHOP symbol
+ edam:data_1893:
+ text: edam:data_1893
+ description: A unique name or other identifier of a genetic locus, typically
+ conforming to a scheme that names loci (such as predicted genes) depending
+ on their position in a molecular sequence, for example a completely sequenced
+ genome or chromosome.
+ meaning: edam:data_1893
+ title: Locus ID
+ edam:data_1895:
+ text: edam:data_1895
+ description: Locus identifier for Arabidopsis Genome Initiative (TAIR, TIGR
+ and MIPS databases).
+ meaning: edam:data_1895
+ title: Locus ID (AGI)
+ edam:data_1896:
+ text: edam:data_1896
+ description: Identifier for loci from ASPGD (Aspergillus Genome Database).
+ meaning: edam:data_1896
+ title: Locus ID (ASPGD)
+ edam:data_1897:
+ text: edam:data_1897
+ description: Identifier for loci from Magnaporthe grisea Database at the Broad
+ Institute.
+ meaning: edam:data_1897
+ title: Locus ID (MGG)
+ edam:data_1898:
+ text: edam:data_1898
+ description: Identifier for loci from CGD (Candida Genome Database).
+ meaning: edam:data_1898
+ title: Locus ID (CGD)
+ edam:data_1899:
+ text: edam:data_1899
+ description: Locus identifier for Comprehensive Microbial Resource at the
+ J. Craig Venter Institute.
+ meaning: edam:data_1899
+ title: Locus ID (CMR)
+ edam:data_1900:
+ text: edam:data_1900
+ description: Identifier for loci from NCBI database.
+ meaning: edam:data_1900
+ title: NCBI locus tag
+ edam:data_1901:
+ text: edam:data_1901
+ description: Identifier for loci from SGD (Saccharomyces Genome Database).
+ meaning: edam:data_1901
+ title: Locus ID (SGD)
+ edam:data_1902:
+ text: edam:data_1902
+ description: Identifier of loci from Maize Mapping Project.
+ meaning: edam:data_1902
+ title: Locus ID (MMP)
+ edam:data_1903:
+ text: edam:data_1903
+ description: Identifier of locus from DictyBase (Dictyostelium discoideum).
+ meaning: edam:data_1903
+ title: Locus ID (DictyBase)
+ edam:data_1904:
+ text: edam:data_1904
+ description: Identifier of a locus from EntrezGene database.
+ meaning: edam:data_1904
+ title: Locus ID (EntrezGene)
+ edam:data_1905:
+ text: edam:data_1905
+ description: Identifier of locus from MaizeGDB (Maize genome database).
+ meaning: edam:data_1905
+ title: Locus ID (MaizeGDB)
+ edam:data_1907:
+ text: edam:data_1907
+ description: Identifier of a gene from the KOME database.
+ meaning: edam:data_1907
+ title: Gene ID (KOME)
+ edam:data_1908:
+ text: edam:data_1908
+ description: Identifier of a locus from the Tropgene database.
+ meaning: edam:data_1908
+ title: Locus ID (Tropgene)
+ edam:data_1916:
+ text: edam:data_1916
+ description: An alignment of molecular sequences, structures or profiles derived
+ from them.
+ meaning: edam:data_1916
+ title: Alignment
+ edam:data_1917:
+ text: edam:data_1917
+ description: Data for an atom (in a molecular structure).
+ meaning: edam:data_1917
+ title: Atomic property
+ edam:data_2007:
+ text: edam:data_2007
+ description: A word or phrase that can appear in the keywords field (KW line)
+ of entries from the UniProt database.
+ meaning: edam:data_2007
+ title: UniProt keyword
+ edam:data_2012:
+ text: edam:data_2012
+ description: A position in a map (for example a genetic map), either a single
+ position (point) or a region / interval.
+ meaning: edam:data_2012
+ title: Sequence coordinates
+ edam:data_2016:
+ text: edam:data_2016
+ description: Data concerning the intrinsic physical (e.g. structural) or chemical
+ properties of one, more or all amino acids.
+ meaning: edam:data_2016
+ title: Amino acid property
+ edam:data_2019:
+ text: edam:data_2019
+ description: Data describing a molecular map (genetic or physical) or a set
+ of such maps, including various attributes of, data extracted from or derived
+ from the analysis of them, but excluding the map(s) themselves. This includes
+ metadata for map sets that share a common set of features which are mapped.
+ meaning: edam:data_2019
+ title: Map data
+ edam:data_2024:
+ text: edam:data_2024
+ description: Data concerning chemical reaction(s) catalysed by enzyme(s).
+ meaning: edam:data_2024
+ title: Enzyme kinetics data
+ edam:data_2025:
+ text: edam:data_2025
+ description: A plot giving an approximation of the kinetics of an enzyme-catalysed
+ reaction, assuming simple kinetics (i.e. no intermediate or product inhibition,
+ allostericity or cooperativity). It plots initial reaction rate to the substrate
+ concentration (S) from which the maximum rate (vmax) is apparent.
+ meaning: edam:data_2025
+ title: Michaelis Menten plot
+ edam:data_2026:
+ text: edam:data_2026
+ description: A plot based on the Michaelis Menten equation of enzyme kinetics
+ plotting the ratio of the initial substrate concentration (S) against the
+ reaction velocity (v).
+ meaning: edam:data_2026
+ title: Hanes Woolf plot
+ edam:data_2042:
+ text: edam:data_2042
+ description: Typically a human-readable summary of body of facts or information
+ indicating why a statement is true or valid. This may include a computational
+ prediction, laboratory experiment, literature reference etc.
+ meaning: edam:data_2042
+ title: Evidence
+ edam:data_2044:
+ text: edam:data_2044
+ description: One or more molecular sequences, possibly with associated annotation.
+ meaning: edam:data_2044
+ title: Sequence
+ edam:data_2048:
+ text: edam:data_2048
+ description: A human-readable collection of information including annotation
+ on a biological entity or phenomena, computer-generated reports of analysis
+ of primary data (e.g. sequence or structural), and metadata (data about
+ primary data) or any other free (essentially unformatted) text, as distinct
+ from the primary data itself.
+ meaning: edam:data_2048
+ title: Report
+ edam:data_2050:
+ text: edam:data_2050
+ description: General data for a molecule.
+ meaning: edam:data_2050
+ title: Molecular property (general)
+ edam:data_2070:
+ text: edam:data_2070
+ description: A nucleotide sequence motif.
+ meaning: edam:data_2070
+ title: Sequence motif (nucleic acid)
+ edam:data_2071:
+ text: edam:data_2071
+ description: An amino acid sequence motif.
+ meaning: edam:data_2071
+ title: Sequence motif (protein)
+ edam:data_2080:
+ text: edam:data_2080
+ description: A report of hits from searching a database of some type.
+ meaning: edam:data_2080
+ title: Database search results
+ edam:data_2082:
+ text: edam:data_2082
+ description: An array of numerical values.
+ meaning: edam:data_2082
+ title: Matrix
+ edam:data_2084:
+ text: edam:data_2084
+ description: A human-readable collection of information about one or more
+ specific nucleic acid molecules.
+ meaning: edam:data_2084
+ title: Nucleic acid report
+ edam:data_2085:
+ text: edam:data_2085
+ description: A human-readable collection of information about one or more
+ molecular tertiary (3D) structures. It might include annotation on the structure,
+ a computer-generated report of analysis of structural data, and metadata
+ (data about primary data) or any other free (essentially unformatted) text,
+ as distinct from the primary data itself.
+ meaning: edam:data_2085
+ title: Structure report
+ edam:data_2087:
+ text: edam:data_2087
+ description: A report on the physical (e.g. structural) or chemical properties
+ of molecules, or parts of a molecule.
+ meaning: edam:data_2087
+ title: Molecular property
+ edam:data_2088:
+ text: edam:data_2088
+ description: Structural data for DNA base pairs or runs of bases, such as
+ energy or angle data.
+ meaning: edam:data_2088
+ title: DNA base structural data
+ edam:data_2091:
+ text: edam:data_2091
+ description: A persistent (stable) and unique identifier, typically identifying
+ an object (entry) from a database.
+ meaning: edam:data_2091
+ title: Accession
+ edam:data_2093:
+ text: edam:data_2093
+ description: Reference to a dataset (or a cross-reference between two datasets),
+ typically one or more entries in a biological database or ontology.
+ meaning: edam:data_2093
+ title: Data reference
+ edam:data_2098:
+ text: edam:data_2098
+ description: An identifier of a submitted job.
+ meaning: edam:data_2098
+ title: Job identifier
+ edam:data_2099:
+ text: edam:data_2099
+ description: A name of a thing, which need not necessarily uniquely identify
+ it.
+ meaning: edam:data_2099
+ title: Name
+ edam:data_2101:
+ text: edam:data_2101
+ description: Authentication data usually used to log in into an account on
+ an information system such as a web application or a database.
+ meaning: edam:data_2101
+ title: Account authentication
+ edam:data_2102:
+ text: edam:data_2102
+ description: A three-letter code used in the KEGG databases to uniquely identify
+ organisms.
+ meaning: edam:data_2102
+ title: KEGG organism code
+ edam:data_2104:
+ text: edam:data_2104
+ description: Identifier of an object from one of the BioCyc databases.
+ meaning: edam:data_2104
+ title: BioCyc ID
+ edam:data_2105:
+ text: edam:data_2105
+ description: Identifier of a compound from the BioCyc chemical compounds database.
+ meaning: edam:data_2105
+ title: Compound ID (BioCyc)
+ edam:data_2106:
+ text: edam:data_2106
+ description: Identifier of a biological reaction from the BioCyc reactions
+ database.
+ meaning: edam:data_2106
+ title: Reaction ID (BioCyc)
+ edam:data_2107:
+ text: edam:data_2107
+ description: Identifier of an enzyme from the BioCyc enzymes database.
+ meaning: edam:data_2107
+ title: Enzyme ID (BioCyc)
+ edam:data_2108:
+ text: edam:data_2108
+ description: Identifier of a biological reaction from a database.
+ meaning: edam:data_2108
+ title: Reaction ID
+ edam:data_2109:
+ text: edam:data_2109
+ description: An identifier that is reused for data objects of fundamentally
+ different types (typically served from a single database).
+ meaning: edam:data_2109
+ title: Identifier (hybrid)
+ edam:data_2110:
+ text: edam:data_2110
+ description: Identifier of a molecular property.
+ meaning: edam:data_2110
+ title: Molecular property identifier
+ edam:data_2111:
+ text: edam:data_2111
+ description: Identifier of a codon usage table, for example a genetic code.
+ meaning: edam:data_2111
+ title: Codon usage table ID
+ edam:data_2112:
+ text: edam:data_2112
+ description: Primary identifier of an object from the FlyBase database.
+ meaning: edam:data_2112
+ title: FlyBase primary identifier
+ edam:data_2113:
+ text: edam:data_2113
+ description: Identifier of an object from the WormBase database.
+ meaning: edam:data_2113
+ title: WormBase identifier
+ edam:data_2114:
+ text: edam:data_2114
+ description: Protein identifier used by WormBase database.
+ meaning: edam:data_2114
+ title: WormBase wormpep ID
+ edam:data_2117:
+ text: edam:data_2117
+ description: An identifier of a map of a molecular sequence.
+ meaning: edam:data_2117
+ title: Map identifier
+ edam:data_2118:
+ text: edam:data_2118
+ description: An identifier of a software end-user on a website or a database
+ (typically a person or an entity).
+ meaning: edam:data_2118
+ title: Person identifier
+ edam:data_2119:
+ text: edam:data_2119
+ description: Name or other identifier of a nucleic acid molecule.
+ meaning: edam:data_2119
+ title: Nucleic acid identifier
+ edam:data_2127:
+ text: edam:data_2127
+ description: An identifier of a genetic code.
+ meaning: edam:data_2127
+ title: Genetic code identifier
+ edam:data_2128:
+ text: edam:data_2128
+ description: Informal name for a genetic code, typically an organism name.
+ meaning: edam:data_2128
+ title: Genetic code name
+ edam:data_2129:
+ text: edam:data_2129
+ description: Name of a file format such as HTML, PNG, PDF, EMBL, GenBank and
+ so on.
+ meaning: edam:data_2129
+ title: File format name
+ edam:data_2131:
+ text: edam:data_2131
+ description: Name of a computer operating system such as Linux, PC or Mac.
+ meaning: edam:data_2131
+ title: Operating system name
+ edam:data_2133:
+ text: edam:data_2133
+ description: A logical operator such as OR, AND, XOR, and NOT.
+ meaning: edam:data_2133
+ title: Logical operator
+ edam:data_2137:
+ text: edam:data_2137
+ description: A penalty for introducing or extending a gap in an alignment.
+ meaning: edam:data_2137
+ title: Gap penalty
+ edam:data_2139:
+ text: edam:data_2139
+ description: A temperature concerning nucleic acid denaturation, typically
+ the temperature at which the two strands of a hybridised or double stranded
+ nucleic acid (DNA or RNA/DNA) molecule separate.
+ meaning: edam:data_2139
+ title: Nucleic acid melting temperature
+ edam:data_2140:
+ text: edam:data_2140
+ description: The concentration of a chemical compound.
+ meaning: edam:data_2140
+ title: Concentration
+ edam:data_2154:
+ text: edam:data_2154
+ description: Any arbitrary name of a molecular sequence.
+ meaning: edam:data_2154
+ title: Sequence name
+ edam:data_2160:
+ text: edam:data_2160
+ description: A plot of Fickett testcode statistic (identifying protein coding
+ regions) in a nucleotide sequences.
+ meaning: edam:data_2160
+ title: Fickett testcode plot
+ edam:data_2161:
+ text: edam:data_2161
+ description: A plot of sequence similarities identified from word-matching
+ or character comparison.
+ meaning: edam:data_2161
+ title: Sequence similarity plot
+ edam:data_2162:
+ text: edam:data_2162
+ description: An image of peptide sequence sequence looking down the axis of
+ the helix for highlighting amphipathicity and other properties.
+ meaning: edam:data_2162
+ title: Helical wheel
+ edam:data_2163:
+ text: edam:data_2163
+ description: An image of peptide sequence sequence in a simple 3,4,3,4 repeating
+ pattern that emulates at a simple level the arrangement of residues around
+ an alpha helix.
+ meaning: edam:data_2163
+ title: Helical net
+ edam:data_2165:
+ text: edam:data_2165
+ description: A plot of pK versus pH for a protein.
+ meaning: edam:data_2165
+ title: Protein ionisation curve
+ edam:data_2166:
+ text: edam:data_2166
+ description: A plot of character or word composition / frequency of a molecular
+ sequence.
+ meaning: edam:data_2166
+ title: Sequence composition plot
+ edam:data_2167:
+ text: edam:data_2167
+ description: Density plot (of base composition) for a nucleotide sequence.
+ meaning: edam:data_2167
+ title: Nucleic acid density plot
+ edam:data_2168:
+ text: edam:data_2168
+ description: Image of a sequence trace (nucleotide sequence versus probabilities
+ of each of the 4 bases).
+ meaning: edam:data_2168
+ title: Sequence trace image
+ edam:data_2174:
+ text: edam:data_2174
+ description: Secondary identifier of an object from the FlyBase database.
+ meaning: edam:data_2174
+ title: FlyBase secondary identifier
+ edam:data_2190:
+ text: edam:data_2190
+ description: A fixed-size datum calculated (by using a hash function) for
+ a molecular sequence, typically for purposes of error detection or indexing.
+ meaning: edam:data_2190
+ title: Sequence checksum
+ edam:data_2193:
+ text: edam:data_2193
+ description: Basic information on any arbitrary database entry.
+ meaning: edam:data_2193
+ title: Database entry metadata
+ edam:data_2208:
+ text: edam:data_2208
+ description: An identifier of a plasmid in a database.
+ meaning: edam:data_2208
+ title: Plasmid identifier
+ edam:data_2209:
+ text: edam:data_2209
+ description: A unique identifier of a specific mutation catalogued in a database.
+ meaning: edam:data_2209
+ title: Mutation ID
+ edam:data_2216:
+ text: edam:data_2216
+ description: The number of a codon, for instance, at which a mutation is located.
+ meaning: edam:data_2216
+ title: Codon number
+ edam:data_2219:
+ text: edam:data_2219
+ description: The name of a field in a database.
+ meaning: edam:data_2219
+ title: Database field name
+ edam:data_2220:
+ text: edam:data_2220
+ description: Unique identifier of a sequence cluster from the SYSTERS database.
+ meaning: edam:data_2220
+ title: Sequence cluster ID (SYSTERS)
+ edam:data_2223:
+ text: edam:data_2223
+ description: Data concerning a biological ontology.
+ meaning: edam:data_2223
+ title: Ontology metadata
+ edam:data_2253:
+ text: edam:data_2253
+ description: The name of a data type.
+ meaning: edam:data_2253
+ title: Data resource definition name
+ edam:data_2254:
+ text: edam:data_2254
+ description: Name of an OBO file format such as OBO-XML, plain and so on.
+ meaning: edam:data_2254
+ title: OBO file format name
+ edam:data_2285:
+ text: edam:data_2285
+ description: Identifier for genetic elements in MIPS database.
+ meaning: edam:data_2285
+ title: Gene ID (MIPS)
+ edam:data_2290:
+ text: edam:data_2290
+ description: An accession number of an entry from the EMBL sequence database.
+ meaning: edam:data_2290
+ title: EMBL accession
+ edam:data_2291:
+ text: edam:data_2291
+ description: An identifier of a polypeptide in the UniProt database.
+ meaning: edam:data_2291
+ title: UniProt ID
+ edam:data_2292:
+ text: edam:data_2292
+ description: Accession number of an entry from the GenBank sequence database.
+ meaning: edam:data_2292
+ title: GenBank accession
+ edam:data_2293:
+ text: edam:data_2293
+ description: Secondary (internal) identifier of a Gramene database entry.
+ meaning: edam:data_2293
+ title: Gramene secondary identifier
+ edam:data_2294:
+ text: edam:data_2294
+ description: An identifier of an entry from a database of molecular sequence
+ variation.
+ meaning: edam:data_2294
+ title: Sequence variation ID
+ edam:data_2295:
+ text: edam:data_2295
+ description: A unique (and typically persistent) identifier of a gene in a
+ database, that is (typically) different to the gene name/symbol.
+ meaning: edam:data_2295
+ title: Gene ID
+ edam:data_2297:
+ text: edam:data_2297
+ description: Identifier of an E. coli K-12 gene from EcoGene Database.
+ meaning: edam:data_2297
+ title: Gene ID (ECK)
+ edam:data_2298:
+ text: edam:data_2298
+ description: Identifier for a gene approved by the HUGO Gene Nomenclature
+ Committee.
+ meaning: edam:data_2298
+ title: Gene ID (HGNC)
+ edam:data_2299:
+ text: edam:data_2299
+ description: The name of a gene, (typically) assigned by a person and/or according
+ to a naming scheme. It may contain white space characters and is typically
+ more intuitive and readable than a gene symbol. It (typically) may be used
+ to identify similar genes in different species and to derive a gene symbol.
+ meaning: edam:data_2299
+ title: Gene name
+ edam:data_2301:
+ text: edam:data_2301
+ description: A specification of a chemical structure in SMILES format.
+ meaning: edam:data_2301
+ title: SMILES string
+ edam:data_2302:
+ text: edam:data_2302
+ description: Unique identifier of an entry from the STRING database of protein-protein
+ interactions.
+ meaning: edam:data_2302
+ title: STRING ID
+ edam:data_2309:
+ text: edam:data_2309
+ description: Identifier of a biological reaction from the SABIO-RK reactions
+ database.
+ meaning: edam:data_2309
+ title: Reaction ID (SABIO-RK)
+ edam:data_2313:
+ text: edam:data_2313
+ description: A human-readable collection of information about one or more
+ specific carbohydrate 3D structure(s).
+ meaning: edam:data_2313
+ title: Carbohydrate report
+ edam:data_2314:
+ text: edam:data_2314
+ description: A series of digits that are assigned consecutively to each sequence
+ record processed by NCBI. The GI number bears no resemblance to the Accession
+ number of the sequence record.
+ meaning: edam:data_2314
+ title: GI number
+ edam:data_2315:
+ text: edam:data_2315
+ description: An identifier assigned to sequence records processed by NCBI,
+ made of the accession number of the database record followed by a dot and
+ a version number.
+ meaning: edam:data_2315
+ title: NCBI version
+ edam:data_2316:
+ text: edam:data_2316
+ description: The name of a cell line.
+ meaning: edam:data_2316
+ title: Cell line name
+ edam:data_2317:
+ text: edam:data_2317
+ description: The exact name of a cell line.
+ meaning: edam:data_2317
+ title: Cell line name (exact)
+ edam:data_2318:
+ text: edam:data_2318
+ description: The truncated name of a cell line.
+ meaning: edam:data_2318
+ title: Cell line name (truncated)
+ edam:data_2319:
+ text: edam:data_2319
+ description: The name of a cell line without any punctuation.
+ meaning: edam:data_2319
+ title: Cell line name (no punctuation)
+ edam:data_2320:
+ text: edam:data_2320
+ description: The assonant name of a cell line.
+ meaning: edam:data_2320
+ title: Cell line name (assonant)
+ edam:data_2321:
+ text: edam:data_2321
+ description: A unique, persistent identifier of an enzyme.
+ meaning: edam:data_2321
+ title: Enzyme ID
+ edam:data_2325:
+ text: edam:data_2325
+ description: Identifier of an enzyme from the REBASE enzymes database.
+ meaning: edam:data_2325
+ title: REBASE enzyme number
+ edam:data_2326:
+ text: edam:data_2326
+ description: Unique identifier of a drug from the DrugBank database.
+ meaning: edam:data_2326
+ title: DrugBank ID
+ edam:data_2327:
+ text: edam:data_2327
+ description: A unique identifier assigned to NCBI protein sequence records.
+ meaning: edam:data_2327
+ title: GI number (protein)
+ edam:data_2335:
+ text: edam:data_2335
+ description: A score derived from the alignment of two sequences, which is
+ then normalised with respect to the scoring system.
+ meaning: edam:data_2335
+ title: Bit score
+ edam:data_2337:
+ text: edam:data_2337
+ description: Data concerning or describing some core computational resource,
+ as distinct from primary data. This includes metadata on the origin, source,
+ history, ownership or location of some thing.
+ meaning: edam:data_2337
+ title: Resource metadata
+ edam:data_2338:
+ text: edam:data_2338
+ description: Any arbitrary identifier of an ontology.
+ meaning: edam:data_2338
+ title: Ontology identifier
+ edam:data_2339:
+ text: edam:data_2339
+ description: The name of a concept in an ontology.
+ meaning: edam:data_2339
+ title: Ontology concept name
+ edam:data_2340:
+ text: edam:data_2340
+ description: An identifier of a build of a particular genome.
+ meaning: edam:data_2340
+ title: Genome build identifier
+ edam:data_2342:
+ text: edam:data_2342
+ description: The name of a biological pathway or network.
+ meaning: edam:data_2342
+ title: Pathway or network name
+ edam:data_2343:
+ text: edam:data_2343
+ description: Identifier of a pathway from the KEGG pathway database.
+ meaning: edam:data_2343
+ title: Pathway ID (KEGG)
+ edam:data_2344:
+ text: edam:data_2344
+ description: Identifier of a pathway from the NCI-Nature pathway database.
+ meaning: edam:data_2344
+ title: Pathway ID (NCI-Nature)
+ edam:data_2345:
+ text: edam:data_2345
+ description: Identifier of a pathway from the ConsensusPathDB pathway database.
+ meaning: edam:data_2345
+ title: Pathway ID (ConsensusPathDB)
+ edam:data_2346:
+ text: edam:data_2346
+ description: Unique identifier of an entry from the UniRef database.
+ meaning: edam:data_2346
+ title: Sequence cluster ID (UniRef)
+ edam:data_2347:
+ text: edam:data_2347
+ description: Unique identifier of an entry from the UniRef100 database.
+ meaning: edam:data_2347
+ title: Sequence cluster ID (UniRef100)
+ edam:data_2348:
+ text: edam:data_2348
+ description: Unique identifier of an entry from the UniRef90 database.
+ meaning: edam:data_2348
+ title: Sequence cluster ID (UniRef90)
+ edam:data_2349:
+ text: edam:data_2349
+ description: Unique identifier of an entry from the UniRef50 database.
+ meaning: edam:data_2349
+ title: Sequence cluster ID (UniRef50)
+ edam:data_2353:
+ text: edam:data_2353
+ description: Data concerning or derived from an ontology.
+ meaning: edam:data_2353
+ title: Ontology data
+ edam:data_2354:
+ text: edam:data_2354
+ description: A human-readable collection of information about a specific RNA
+ family or other group of classified RNA sequences.
+ meaning: edam:data_2354
+ title: RNA family report
+ edam:data_2355:
+ text: edam:data_2355
+ description: Identifier of an RNA family, typically an entry from a RNA sequence
+ classification database.
+ meaning: edam:data_2355
+ title: RNA family identifier
+ edam:data_2356:
+ text: edam:data_2356
+ description: Stable accession number of an entry (RNA family) from the RFAM
+ database.
+ meaning: edam:data_2356
+ title: RFAM accession
+ edam:data_2362:
+ text: edam:data_2362
+ description: Accession number of a nucleotide or protein sequence database
+ entry.
+ meaning: edam:data_2362
+ title: Sequence accession (hybrid)
+ edam:data_2365:
+ text: edam:data_2365
+ description: A persistent, unique identifier of a biological pathway or network
+ (typically a database entry).
+ meaning: edam:data_2365
+ title: Pathway or network accession
+ edam:data_2366:
+ text: edam:data_2366
+ description: Alignment of the (1D representations of) secondary structure
+ of two or more molecules.
+ meaning: edam:data_2366
+ title: Secondary structure alignment
+ edam:data_2367:
+ text: edam:data_2367
+ description: Identifier of an object from the ASTD database.
+ meaning: edam:data_2367
+ title: ASTD ID
+ edam:data_2368:
+ text: edam:data_2368
+ description: Identifier of an exon from the ASTD database.
+ meaning: edam:data_2368
+ title: ASTD ID (exon)
+ edam:data_2369:
+ text: edam:data_2369
+ description: Identifier of an intron from the ASTD database.
+ meaning: edam:data_2369
+ title: ASTD ID (intron)
+ edam:data_2370:
+ text: edam:data_2370
+ description: Identifier of a polyA signal from the ASTD database.
+ meaning: edam:data_2370
+ title: ASTD ID (polya)
+ edam:data_2371:
+ text: edam:data_2371
+ description: Identifier of a transcription start site from the ASTD database.
+ meaning: edam:data_2371
+ title: ASTD ID (tss)
+ edam:data_2373:
+ text: edam:data_2373
+ description: Unique identifier of a spot from a two-dimensional (protein)
+ gel.
+ meaning: edam:data_2373
+ title: Spot ID
+ edam:data_2374:
+ text: edam:data_2374
+ description: Unique identifier of a spot from a two-dimensional (protein)
+ gel in the SWISS-2DPAGE database.
+ meaning: edam:data_2374
+ title: Spot serial number
+ edam:data_2375:
+ text: edam:data_2375
+ description: Unique identifier of a spot from a two-dimensional (protein)
+ gel from a HSC-2DPAGE database.
+ meaning: edam:data_2375
+ title: Spot ID (HSC-2DPAGE)
+ edam:data_2379:
+ text: edam:data_2379
+ description: Identifier of a strain of an organism variant, typically a plant,
+ virus or bacterium.
+ meaning: edam:data_2379
+ title: Strain identifier
+ edam:data_2380:
+ text: edam:data_2380
+ description: A unique identifier of an item from the CABRI database.
+ meaning: edam:data_2380
+ title: CABRI accession
+ edam:data_2382:
+ text: edam:data_2382
+ description: Identifier of an entry from a database of genotype experiment
+ metadata.
+ meaning: edam:data_2382
+ title: Genotype experiment ID
+ edam:data_2383:
+ text: edam:data_2383
+ description: Identifier of an entry from the EGA database.
+ meaning: edam:data_2383
+ title: EGA accession
+ edam:data_2384:
+ text: edam:data_2384
+ description: Identifier of a protein entry catalogued in the International
+ Protein Index (IPI) database.
+ meaning: edam:data_2384
+ title: IPI protein ID
+ edam:data_2385:
+ text: edam:data_2385
+ description: Accession number of a protein from the RefSeq database.
+ meaning: edam:data_2385
+ title: RefSeq accession (protein)
+ edam:data_2386:
+ text: edam:data_2386
+ description: Identifier of an entry (promoter) from the EPD database.
+ meaning: edam:data_2386
+ title: EPD ID
+ edam:data_2387:
+ text: edam:data_2387
+ description: Identifier of an entry from the TAIR database.
+ meaning: edam:data_2387
+ title: TAIR accession
+ edam:data_2388:
+ text: edam:data_2388
+ description: Identifier of an Arabidopsis thaliana gene from the TAIR database.
+ meaning: edam:data_2388
+ title: TAIR accession (At gene)
+ edam:data_2389:
+ text: edam:data_2389
+ description: Identifier of an entry from the UniSTS database.
+ meaning: edam:data_2389
+ title: UniSTS accession
+ edam:data_2390:
+ text: edam:data_2390
+ description: Identifier of an entry from the UNITE database.
+ meaning: edam:data_2390
+ title: UNITE accession
+ edam:data_2391:
+ text: edam:data_2391
+ description: Identifier of an entry from the UTR database.
+ meaning: edam:data_2391
+ title: UTR accession
+ edam:data_2392:
+ text: edam:data_2392
+ description: Accession number of a UniParc (protein sequence) database entry.
+ meaning: edam:data_2392
+ title: UniParc accession
+ edam:data_2393:
+ text: edam:data_2393
+ description: Identifier of an entry from the Rouge or HUGE databases.
+ meaning: edam:data_2393
+ title: mFLJ/mKIAA number
+ edam:data_2398:
+ text: edam:data_2398
+ description: Unique identifier for a protein from the Ensembl database.
+ meaning: edam:data_2398
+ title: Ensembl protein ID
+ edam:data_2523:
+ text: edam:data_2523
+ description: Data concerning phylogeny, typically of molecular sequences,
+ including reports of information concerning or derived from a phylogenetic
+ tree, or from comparing two or more phylogenetic trees.
+ meaning: edam:data_2523
+ title: Phylogenetic data
+ edam:data_2526:
+ text: edam:data_2526
+ description: Data concerning, extracted from, or derived from the analysis
+ of a scientific text (or texts) such as a full text article from a scientific
+ journal.
+ meaning: edam:data_2526
+ title: Text data
+ edam:data_2530:
+ text: edam:data_2530
+ description: A human-readable collection of information about a specific organism.
+ meaning: edam:data_2530
+ title: Organism report
+ edam:data_2531:
+ text: edam:data_2531
+ description: A human-readable collection of information about about how a
+ scientific experiment or analysis was carried out that results in a specific
+ set of data or results used for further analysis or to test a specific hypothesis.
+ meaning: edam:data_2531
+ title: Protocol
+ edam:data_2534:
+ text: edam:data_2534
+ description: An attribute of a molecular sequence, possibly in reference to
+ some other sequence.
+ meaning: edam:data_2534
+ title: Sequence attribute
+ edam:data_2535:
+ text: edam:data_2535
+ description: Output from a serial analysis of gene expression (SAGE), massively
+ parallel signature sequencing (MPSS) or sequencing by synthesis (SBS) experiment.
+ In all cases this is a list of short sequence tags and the number of times
+ it is observed.
+ meaning: edam:data_2535
+ title: Sequence tag profile
+ edam:data_2536:
+ text: edam:data_2536
+ description: Data concerning a mass spectrometry measurement.
+ meaning: edam:data_2536
+ title: Mass spectrometry data
+ edam:data_2537:
+ text: edam:data_2537
+ description: Raw data from experimental methods for determining protein structure.
+ meaning: edam:data_2537
+ title: Protein structure raw data
+ edam:data_2538:
+ text: edam:data_2538
+ description: An identifier of a mutation.
+ meaning: edam:data_2538
+ title: Mutation identifier
+ edam:data_2563:
+ text: edam:data_2563
+ description: Single letter amino acid identifier, e.g. G.
+ meaning: edam:data_2563
+ title: Amino acid name (single letter)
+ edam:data_2564:
+ text: edam:data_2564
+ description: Three letter amino acid identifier, e.g. GLY.
+ meaning: edam:data_2564
+ title: Amino acid name (three letter)
+ edam:data_2565:
+ text: edam:data_2565
+ description: Full name of an amino acid, e.g. Glycine.
+ meaning: edam:data_2565
+ title: Amino acid name (full name)
+ edam:data_2576:
+ text: edam:data_2576
+ description: Identifier of a toxin.
+ meaning: edam:data_2576
+ title: Toxin identifier
+ edam:data_2578:
+ text: edam:data_2578
+ description: Unique identifier of a toxin from the ArachnoServer database.
+ meaning: edam:data_2578
+ title: ArachnoServer ID
+ edam:data_2580:
+ text: edam:data_2580
+ description: Unique identifier of a monomer from the BindingDB database.
+ meaning: edam:data_2580
+ title: BindingDB Monomer ID
+ edam:data_2582:
+ text: edam:data_2582
+ description: An identifier of a 'biological process' concept from the the
+ Gene Ontology.
+ meaning: edam:data_2582
+ title: GO concept ID (biological process)
+ edam:data_2583:
+ text: edam:data_2583
+ description: An identifier of a 'molecular function' concept from the the
+ Gene Ontology.
+ meaning: edam:data_2583
+ title: GO concept ID (molecular function)
+ edam:data_2586:
+ text: edam:data_2586
+ description: An image arising from a Northern Blot experiment.
+ meaning: edam:data_2586
+ title: Northern blot image
+ edam:data_2587:
+ text: edam:data_2587
+ description: Unique identifier of a blot from a Northern Blot.
+ meaning: edam:data_2587
+ title: Blot ID
+ edam:data_2588:
+ text: edam:data_2588
+ description: Unique identifier of a blot from a Northern Blot from the BlotBase
+ database.
+ meaning: edam:data_2588
+ title: BlotBase blot ID
+ edam:data_2589:
+ text: edam:data_2589
+ description: Raw data on a biological hierarchy, describing the hierarchy
+ proper, hierarchy components and possibly associated annotation.
+ meaning: edam:data_2589
+ title: Hierarchy
+ edam:data_2591:
+ text: edam:data_2591
+ description: Identifier of an entry from the Brite database of biological
+ hierarchies.
+ meaning: edam:data_2591
+ title: Brite hierarchy ID
+ edam:data_2593:
+ text: edam:data_2593
+ description: A unique identifier for an organism used in the BRENDA database.
+ meaning: edam:data_2593
+ title: BRENDA organism ID
+ edam:data_2594:
+ text: edam:data_2594
+ description: The name of a taxon using the controlled vocabulary of the UniGene
+ database.
+ meaning: edam:data_2594
+ title: UniGene taxon
+ edam:data_2595:
+ text: edam:data_2595
+ description: The name of a taxon using the controlled vocabulary of the UTRdb
+ database.
+ meaning: edam:data_2595
+ title: UTRdb taxon
+ edam:data_2596:
+ text: edam:data_2596
+ description: An identifier of a catalogue of biological resources.
+ meaning: edam:data_2596
+ title: Catalogue ID
+ edam:data_2597:
+ text: edam:data_2597
+ description: The name of a catalogue of biological resources from the CABRI
+ database.
+ meaning: edam:data_2597
+ title: CABRI catalogue name
+ edam:data_2600:
+ text: edam:data_2600
+ description: Primary data about a specific biological pathway or network (the
+ nodes and connections within the pathway or network).
+ meaning: edam:data_2600
+ title: Pathway or network
+ edam:data_2603:
+ text: edam:data_2603
+ description: Image, hybridisation or some other data arising from a study
+ of feature/molecule expression, typically profiling or quantification.
+ meaning: edam:data_2603
+ title: Expression data
+ edam:data_2605:
+ text: edam:data_2605
+ description: Unique identifier of a chemical compound from the KEGG database.
+ meaning: edam:data_2605
+ title: Compound ID (KEGG)
+ edam:data_2606:
+ text: edam:data_2606
+ description: Name (not necessarily stable) an entry (RNA family) from the
+ RFAM database.
+ meaning: edam:data_2606
+ title: RFAM name
+ edam:data_2608:
+ text: edam:data_2608
+ description: Identifier of a biological reaction from the KEGG reactions database.
+ meaning: edam:data_2608
+ title: Reaction ID (KEGG)
+ edam:data_2609:
+ text: edam:data_2609
+ description: Unique identifier of a drug from the KEGG Drug database.
+ meaning: edam:data_2609
+ title: Drug ID (KEGG)
+ edam:data_2610:
+ text: edam:data_2610
+ description: Identifier of an entry (exon, gene, transcript or protein) from
+ the Ensembl database.
+ meaning: edam:data_2610
+ title: Ensembl ID
+ edam:data_2611:
+ text: edam:data_2611
+ description: An identifier of a disease from the International Classification
+ of Diseases (ICD) database.
+ meaning: edam:data_2611
+ title: ICD identifier
+ edam:data_2612:
+ text: edam:data_2612
+ description: Unique identifier of a sequence cluster from the CluSTr database.
+ meaning: edam:data_2612
+ title: Sequence cluster ID (CluSTr)
+ edam:data_2613:
+ text: edam:data_2613
+ description: Unique identifier of a glycan ligand from the KEGG GLYCAN database
+ (a subset of KEGG LIGAND).
+ meaning: edam:data_2613
+ title: KEGG Glycan ID
+ edam:data_2614:
+ text: edam:data_2614
+ description: A unique identifier of a family from the transport classification
+ database (TCDB) of membrane transport proteins.
+ meaning: edam:data_2614
+ title: TCDB ID
+ edam:data_2615:
+ text: edam:data_2615
+ description: Unique identifier of an entry from the MINT database of protein-protein
+ interactions.
+ meaning: edam:data_2615
+ title: MINT ID
+ edam:data_2616:
+ text: edam:data_2616
+ description: Unique identifier of an entry from the DIP database of protein-protein
+ interactions.
+ meaning: edam:data_2616
+ title: DIP ID
+ edam:data_2617:
+ text: edam:data_2617
+ description: Unique identifier of a protein listed in the UCSD-Nature Signaling
+ Gateway Molecule Pages database.
+ meaning: edam:data_2617
+ title: Signaling Gateway protein ID
+ edam:data_2618:
+ text: edam:data_2618
+ description: Identifier of a protein modification catalogued in a database.
+ meaning: edam:data_2618
+ title: Protein modification ID
+ edam:data_2619:
+ text: edam:data_2619
+ description: Identifier of a protein modification catalogued in the RESID
+ database.
+ meaning: edam:data_2619
+ title: RESID ID
+ edam:data_2620:
+ text: edam:data_2620
+ description: Identifier of an entry from the RGD database.
+ meaning: edam:data_2620
+ title: RGD ID
+ edam:data_2621:
+ text: edam:data_2621
+ description: Identifier of a protein sequence from the TAIR database.
+ meaning: edam:data_2621
+ title: TAIR accession (protein)
+ edam:data_2622:
+ text: edam:data_2622
+ description: Identifier of a small molecule metabolite from the Human Metabolome
+ Database (HMDB).
+ meaning: edam:data_2622
+ title: Compound ID (HMDB)
+ edam:data_2625:
+ text: edam:data_2625
+ description: Identifier of an entry from the LIPID MAPS database.
+ meaning: edam:data_2625
+ title: LIPID MAPS ID
+ edam:data_2626:
+ text: edam:data_2626
+ description: Identifier of a peptide from the PeptideAtlas peptide databases.
+ meaning: edam:data_2626
+ title: PeptideAtlas ID
+ edam:data_2628:
+ text: edam:data_2628
+ description: A unique identifier of an interaction from the BioGRID database.
+ meaning: edam:data_2628
+ title: BioGRID interaction ID
+ edam:data_2629:
+ text: edam:data_2629
+ description: Unique identifier of a peptidase enzyme from the MEROPS database.
+ meaning: edam:data_2629
+ title: Enzyme ID (MEROPS)
+ edam:data_2630:
+ text: edam:data_2630
+ description: An identifier of a mobile genetic element.
+ meaning: edam:data_2630
+ title: Mobile genetic element ID
+ edam:data_2631:
+ text: edam:data_2631
+ description: An identifier of a mobile genetic element from the Aclame database.
+ meaning: edam:data_2631
+ title: ACLAME ID
+ edam:data_2632:
+ text: edam:data_2632
+ description: Identifier of an entry from the Saccharomyces genome database
+ (SGD).
+ meaning: edam:data_2632
+ title: SGD ID
+ edam:data_2633:
+ text: edam:data_2633
+ description: Unique identifier of a book.
+ meaning: edam:data_2633
+ title: Book ID
+ edam:data_2634:
+ text: edam:data_2634
+ description: The International Standard Book Number (ISBN) is for identifying
+ printed books.
+ meaning: edam:data_2634
+ title: ISBN
+ edam:data_2635:
+ text: edam:data_2635
+ description: Identifier of a metabolite from the 3DMET database.
+ meaning: edam:data_2635
+ title: Compound ID (3DMET)
+ edam:data_2636:
+ text: edam:data_2636
+ description: A unique identifier of an interaction from the MatrixDB database.
+ meaning: edam:data_2636
+ title: MatrixDB interaction ID
+ edam:data_2637:
+ text: edam:data_2637
+ description: A unique identifier for pathways, reactions, complexes and small
+ molecules from the cPath (Pathway Commons) database.
+ meaning: edam:data_2637
+ title: cPath ID
+ edam:data_2638:
+ text: edam:data_2638
+ description: Identifier of an assay from the PubChem database.
+ meaning: edam:data_2638
+ title: PubChem bioassay ID
+ edam:data_2639:
+ text: edam:data_2639
+ description: Identifier of an entry from the PubChem database.
+ meaning: edam:data_2639
+ title: PubChem ID
+ edam:data_2641:
+ text: edam:data_2641
+ description: Identifier of an enzyme reaction mechanism from the MACie database.
+ meaning: edam:data_2641
+ title: Reaction ID (MACie)
+ edam:data_2642:
+ text: edam:data_2642
+ description: Identifier for a gene from the miRBase database.
+ meaning: edam:data_2642
+ title: Gene ID (miRBase)
+ edam:data_2643:
+ text: edam:data_2643
+ description: Identifier for a gene from the Zebrafish information network
+ genome (ZFIN) database.
+ meaning: edam:data_2643
+ title: Gene ID (ZFIN)
+ edam:data_2644:
+ text: edam:data_2644
+ description: Identifier of an enzyme-catalysed reaction from the Rhea database.
+ meaning: edam:data_2644
+ title: Reaction ID (Rhea)
+ edam:data_2645:
+ text: edam:data_2645
+ description: Identifier of a biological pathway from the Unipathway database.
+ meaning: edam:data_2645
+ title: Pathway ID (Unipathway)
+ edam:data_2646:
+ text: edam:data_2646
+ description: Identifier of a small molecular from the ChEMBL database.
+ meaning: edam:data_2646
+ title: Compound ID (ChEMBL)
+ edam:data_2647:
+ text: edam:data_2647
+ description: Unique identifier of an entry from the Ligand-gated ion channel
+ (LGICdb) database.
+ meaning: edam:data_2647
+ title: LGICdb identifier
+ edam:data_2648:
+ text: edam:data_2648
+ description: Identifier of a biological reaction (kinetics entry) from the
+ SABIO-RK reactions database.
+ meaning: edam:data_2648
+ title: Reaction kinetics ID (SABIO-RK)
+ edam:data_2649:
+ text: edam:data_2649
+ description: Identifier of an entry from the pharmacogenetics and pharmacogenomics
+ knowledge base (PharmGKB).
+ meaning: edam:data_2649
+ title: PharmGKB ID
+ edam:data_2650:
+ text: edam:data_2650
+ description: Identifier of a pathway from the pharmacogenetics and pharmacogenomics
+ knowledge base (PharmGKB).
+ meaning: edam:data_2650
+ title: Pathway ID (PharmGKB)
+ edam:data_2651:
+ text: edam:data_2651
+ description: Identifier of a disease from the pharmacogenetics and pharmacogenomics
+ knowledge base (PharmGKB).
+ meaning: edam:data_2651
+ title: Disease ID (PharmGKB)
+ edam:data_2652:
+ text: edam:data_2652
+ description: Identifier of a drug from the pharmacogenetics and pharmacogenomics
+ knowledge base (PharmGKB).
+ meaning: edam:data_2652
+ title: Drug ID (PharmGKB)
+ edam:data_2653:
+ text: edam:data_2653
+ description: Identifier of a drug from the Therapeutic Target Database (TTD).
+ meaning: edam:data_2653
+ title: Drug ID (TTD)
+ edam:data_2654:
+ text: edam:data_2654
+ description: Identifier of a target protein from the Therapeutic Target Database
+ (TTD).
+ meaning: edam:data_2654
+ title: Target ID (TTD)
+ edam:data_2655:
+ text: edam:data_2655
+ description: A unique identifier of a type or group of cells.
+ meaning: edam:data_2655
+ title: Cell type identifier
+ edam:data_2656:
+ text: edam:data_2656
+ description: A unique identifier of a neuron from the NeuronDB database.
+ meaning: edam:data_2656
+ title: NeuronDB ID
+ edam:data_2657:
+ text: edam:data_2657
+ description: A unique identifier of a neuron from the NeuroMorpho database.
+ meaning: edam:data_2657
+ title: NeuroMorpho ID
+ edam:data_2658:
+ text: edam:data_2658
+ description: Identifier of a chemical from the ChemIDplus database.
+ meaning: edam:data_2658
+ title: Compound ID (ChemIDplus)
+ edam:data_2659:
+ text: edam:data_2659
+ description: Identifier of a pathway from the Small Molecule Pathway Database
+ (SMPDB).
+ meaning: edam:data_2659
+ title: Pathway ID (SMPDB)
+ edam:data_2660:
+ text: edam:data_2660
+ description: Identifier of an entry from the BioNumbers database of key numbers
+ and associated data in molecular biology.
+ meaning: edam:data_2660
+ title: BioNumbers ID
+ edam:data_2662:
+ text: edam:data_2662
+ description: Unique identifier of a toxin from the Toxin and Toxin Target
+ Database (T3DB) database.
+ meaning: edam:data_2662
+ title: T3DB ID
+ edam:data_2663:
+ text: edam:data_2663
+ description: Identifier of a carbohydrate.
+ meaning: edam:data_2663
+ title: Carbohydrate identifier
+ edam:data_2664:
+ text: edam:data_2664
+ description: Identifier of an entry from the GlycomeDB database.
+ meaning: edam:data_2664
+ title: GlycomeDB ID
+ edam:data_2665:
+ text: edam:data_2665
+ description: Identifier of an entry from the LipidBank database.
+ meaning: edam:data_2665
+ title: LipidBank ID
+ edam:data_2666:
+ text: edam:data_2666
+ description: Identifier of a conserved domain from the Conserved Domain Database.
+ meaning: edam:data_2666
+ title: CDD ID
+ edam:data_2667:
+ text: edam:data_2667
+ description: An identifier of an entry from the MMDB database.
+ meaning: edam:data_2667
+ title: MMDB ID
+ edam:data_2668:
+ text: edam:data_2668
+ description: Unique identifier of an entry from the iRefIndex database of
+ protein-protein interactions.
+ meaning: edam:data_2668
+ title: iRefIndex ID
+ edam:data_2669:
+ text: edam:data_2669
+ description: Unique identifier of an entry from the ModelDB database.
+ meaning: edam:data_2669
+ title: ModelDB ID
+ edam:data_2670:
+ text: edam:data_2670
+ description: Identifier of a signaling pathway from the Database of Quantitative
+ Cellular Signaling (DQCS).
+ meaning: edam:data_2670
+ title: Pathway ID (DQCS)
+ edam:data_2700:
+ text: edam:data_2700
+ description: Identifier of a protein domain (or other node) from the CATH
+ database.
+ meaning: edam:data_2700
+ title: CATH identifier
+ edam:data_2701:
+ text: edam:data_2701
+ description: A code number identifying a family from the CATH database.
+ meaning: edam:data_2701
+ title: CATH node ID (family)
+ edam:data_2702:
+ text: edam:data_2702
+ description: Identifier of an enzyme from the CAZy enzymes database.
+ meaning: edam:data_2702
+ title: Enzyme ID (CAZy)
+ edam:data_2704:
+ text: edam:data_2704
+ description: A unique identifier assigned by the I.M.A.G.E. consortium to
+ a clone (cloned molecular sequence).
+ meaning: edam:data_2704
+ title: Clone ID (IMAGE)
+ edam:data_2705:
+ text: edam:data_2705
+ description: An identifier of a 'cellular component' concept from the Gene
+ Ontology.
+ meaning: edam:data_2705
+ title: GO concept ID (cellular component)
+ edam:data_2706:
+ text: edam:data_2706
+ description: Name of a chromosome as used in the BioCyc database.
+ meaning: edam:data_2706
+ title: Chromosome name (BioCyc)
+ edam:data_2709:
+ text: edam:data_2709
+ description: An identifier of a gene expression profile from the CleanEx database.
+ meaning: edam:data_2709
+ title: CleanEx entry name
+ edam:data_2710:
+ text: edam:data_2710
+ description: An identifier of (typically a list of) gene expression experiments
+ catalogued in the CleanEx database.
+ meaning: edam:data_2710
+ title: CleanEx dataset code
+ edam:data_2711:
+ text: edam:data_2711
+ description: A human-readable collection of information concerning a genome
+ as a whole.
+ meaning: edam:data_2711
+ title: Genome report
+ edam:data_2713:
+ text: edam:data_2713
+ description: Unique identifier for a protein complex from the CORUM database.
+ meaning: edam:data_2713
+ title: Protein ID (CORUM)
+ edam:data_2714:
+ text: edam:data_2714
+ description: Unique identifier of a position-specific scoring matrix from
+ the CDD database.
+ meaning: edam:data_2714
+ title: CDD PSSM-ID
+ edam:data_2715:
+ text: edam:data_2715
+ description: Unique identifier for a protein from the CuticleDB database.
+ meaning: edam:data_2715
+ title: Protein ID (CuticleDB)
+ edam:data_2716:
+ text: edam:data_2716
+ description: Identifier of a predicted transcription factor from the DBD database.
+ meaning: edam:data_2716
+ title: DBD ID
+ edam:data_2717:
+ text: edam:data_2717
+ description: General annotation on an oligonucleotide probe, or a set of probes.
+ meaning: edam:data_2717
+ title: Oligonucleotide probe annotation
+ edam:data_2718:
+ text: edam:data_2718
+ description: Identifier of an oligonucleotide from a database.
+ meaning: edam:data_2718
+ title: Oligonucleotide ID
+ edam:data_2719:
+ text: edam:data_2719
+ description: Identifier of an oligonucleotide probe from the dbProbe database.
+ meaning: edam:data_2719
+ title: dbProbe ID
+ edam:data_2720:
+ text: edam:data_2720
+ description: Physicochemical property data for one or more dinucleotides.
+ meaning: edam:data_2720
+ title: Dinucleotide property
+ edam:data_2721:
+ text: edam:data_2721
+ description: Identifier of an dinucleotide property from the DiProDB database.
+ meaning: edam:data_2721
+ title: DiProDB ID
+ edam:data_2723:
+ text: edam:data_2723
+ description: Unique identifier for a protein from the DisProt database.
+ meaning: edam:data_2723
+ title: Protein ID (DisProt)
+ edam:data_2725:
+ text: edam:data_2725
+ description: Unique identifier for a gene transcript from the Ensembl database.
+ meaning: edam:data_2725
+ title: Ensembl transcript ID
+ edam:data_2727:
+ text: edam:data_2727
+ description: An identifier of a promoter of a gene that is catalogued in a
+ database.
+ meaning: edam:data_2727
+ title: Promoter ID
+ edam:data_2728:
+ text: edam:data_2728
+ description: Identifier of an EST sequence.
+ meaning: edam:data_2728
+ title: EST accession
+ edam:data_2729:
+ text: edam:data_2729
+ description: Identifier of an EST sequence from the COGEME database.
+ meaning: edam:data_2729
+ title: COGEME EST ID
+ edam:data_2730:
+ text: edam:data_2730
+ description: Identifier of a unisequence from the COGEME database.
+ meaning: edam:data_2730
+ title: COGEME unisequence ID
+ edam:data_2731:
+ text: edam:data_2731
+ description: Accession number of an entry (protein family) from the GeneFarm
+ database.
+ meaning: edam:data_2731
+ title: Protein family ID (GeneFarm)
+ edam:data_2732:
+ text: edam:data_2732
+ description: The name of a family of organism.
+ meaning: edam:data_2732
+ title: Family name
+ edam:data_2736:
+ text: edam:data_2736
+ description: A feature identifier as used in the SwissRegulon database.
+ meaning: edam:data_2736
+ title: Sequence feature ID (SwissRegulon)
+ edam:data_2737:
+ text: edam:data_2737
+ description: A unique identifier of gene in the NMPDR database.
+ meaning: edam:data_2737
+ title: FIG ID
+ edam:data_2738:
+ text: edam:data_2738
+ description: A unique identifier of gene in the Xenbase database.
+ meaning: edam:data_2738
+ title: Gene ID (Xenbase)
+ edam:data_2739:
+ text: edam:data_2739
+ description: A unique identifier of gene in the Genolist database.
+ meaning: edam:data_2739
+ title: Gene ID (Genolist)
+ edam:data_2741:
+ text: edam:data_2741
+ description: Identifier of an entry (promoter) from the ABS database.
+ meaning: edam:data_2741
+ title: ABS ID
+ edam:data_2742:
+ text: edam:data_2742
+ description: Identifier of a transcription factor from the AraC-XylS database.
+ meaning: edam:data_2742
+ title: AraC-XylS ID
+ edam:data_2744:
+ text: edam:data_2744
+ description: Identifier of a locus from the PseudoCAP database.
+ meaning: edam:data_2744
+ title: Locus ID (PseudoCAP)
+ edam:data_2745:
+ text: edam:data_2745
+ description: Identifier of a locus from the UTR database.
+ meaning: edam:data_2745
+ title: Locus ID (UTR)
+ edam:data_2746:
+ text: edam:data_2746
+ description: Unique identifier of a monosaccharide from the MonosaccharideDB
+ database.
+ meaning: edam:data_2746
+ title: MonosaccharideDB ID
+ edam:data_2749:
+ text: edam:data_2749
+ description: An identifier of a particular genome.
+ meaning: edam:data_2749
+ title: Genome identifier
+ edam:data_2752:
+ text: edam:data_2752
+ description: Identifier of an entry from the GlycoMapsDB (Glycosciences.de)
+ database.
+ meaning: edam:data_2752
+ title: GlycoMap ID
+ edam:data_2753:
+ text: edam:data_2753
+ description: A conformational energy map of the glycosidic linkages in a carbohydrate
+ molecule.
+ meaning: edam:data_2753
+ title: Carbohydrate conformational map
+ edam:data_2755:
+ text: edam:data_2755
+ description: The name of a transcription factor.
+ meaning: edam:data_2755
+ title: Transcription factor name
+ edam:data_2756:
+ text: edam:data_2756
+ description: Identifier of a membrane transport proteins from the transport
+ classification database (TCDB).
+ meaning: edam:data_2756
+ title: TCID
+ edam:data_2757:
+ text: edam:data_2757
+ description: Name of a domain from the Pfam database.
+ meaning: edam:data_2757
+ title: Pfam domain name
+ edam:data_2758:
+ text: edam:data_2758
+ description: Accession number of a Pfam clan.
+ meaning: edam:data_2758
+ title: Pfam clan ID
+ edam:data_2759:
+ text: edam:data_2759
+ description: Identifier for a gene from the VectorBase database.
+ meaning: edam:data_2759
+ title: Gene ID (VectorBase)
+ edam:data_2761:
+ text: edam:data_2761
+ description: Identifier of an entry from the UTRSite database of regulatory
+ motifs in eukaryotic UTRs.
+ meaning: edam:data_2761
+ title: UTRSite ID
+ edam:data_2762:
+ text: edam:data_2762
+ description: An informative report about a specific or conserved pattern in
+ a molecular sequence, such as its context in genes or proteins, its role,
+ origin or method of construction, etc.
+ meaning: edam:data_2762
+ title: Sequence signature report
+ edam:data_2764:
+ text: edam:data_2764
+ description: Official name of a protein as used in the UniProt database.
+ meaning: edam:data_2764
+ title: Protein name (UniProt)
+ edam:data_2766:
+ text: edam:data_2766
+ description: Name of a protein family from the HAMAP database.
+ meaning: edam:data_2766
+ title: HAMAP ID
+ edam:data_2769:
+ text: edam:data_2769
+ description: Identifier of a RNA transcript.
+ meaning: edam:data_2769
+ title: Transcript ID
+ edam:data_2770:
+ text: edam:data_2770
+ description: Identifier of an RNA transcript from the H-InvDB database.
+ meaning: edam:data_2770
+ title: HIT ID
+ edam:data_2771:
+ text: edam:data_2771
+ description: A unique identifier of gene cluster in the H-InvDB database.
+ meaning: edam:data_2771
+ title: HIX ID
+ edam:data_2772:
+ text: edam:data_2772
+ description: Identifier of a antibody from the HPA database.
+ meaning: edam:data_2772
+ title: HPA antibody id
+ edam:data_2773:
+ text: edam:data_2773
+ description: Identifier of a human major histocompatibility complex (HLA)
+ or other protein from the IMGT/HLA database.
+ meaning: edam:data_2773
+ title: IMGT/HLA ID
+ edam:data_2774:
+ text: edam:data_2774
+ description: A unique identifier of gene assigned by the J. Craig Venter Institute
+ (JCVI).
+ meaning: edam:data_2774
+ title: Gene ID (JCVI)
+ edam:data_2775:
+ text: edam:data_2775
+ description: The name of a kinase protein.
+ meaning: edam:data_2775
+ title: Kinase name
+ edam:data_2776:
+ text: edam:data_2776
+ description: Identifier of a physical entity from the ConsensusPathDB database.
+ meaning: edam:data_2776
+ title: ConsensusPathDB entity ID
+ edam:data_2777:
+ text: edam:data_2777
+ description: Name of a physical entity from the ConsensusPathDB database.
+ meaning: edam:data_2777
+ title: ConsensusPathDB entity name
+ edam:data_2778:
+ text: edam:data_2778
+ description: The number of a strain of algae and protozoa from the CCAP database.
+ meaning: edam:data_2778
+ title: CCAP strain number
+ edam:data_2779:
+ text: edam:data_2779
+ description: An identifier of stock from a catalogue of biological resources.
+ meaning: edam:data_2779
+ title: Stock number
+ edam:data_2780:
+ text: edam:data_2780
+ description: A stock number from The Arabidopsis information resource (TAIR).
+ meaning: edam:data_2780
+ title: Stock number (TAIR)
+ edam:data_2781:
+ text: edam:data_2781
+ description: Identifier of an entry from the RNA editing database (REDIdb).
+ meaning: edam:data_2781
+ title: REDIdb ID
+ edam:data_2782:
+ text: edam:data_2782
+ description: Name of a domain from the SMART database.
+ meaning: edam:data_2782
+ title: SMART domain name
+ edam:data_2783:
+ text: edam:data_2783
+ description: Accession number of an entry (family) from the PANTHER database.
+ meaning: edam:data_2783
+ title: Protein family ID (PANTHER)
+ edam:data_2784:
+ text: edam:data_2784
+ description: A unique identifier for a virus from the RNAVirusDB database.
+ meaning: edam:data_2784
+ title: RNAVirusDB ID
+ edam:data_2785:
+ text: edam:data_2785
+ description: An accession of annotation on a (group of) viruses (catalogued
+ in a database).
+ meaning: edam:data_2785
+ title: Virus identifier
+ edam:data_2786:
+ text: edam:data_2786
+ description: An identifier of a genome project assigned by NCBI.
+ meaning: edam:data_2786
+ title: NCBI Genome Project ID
+ edam:data_2787:
+ text: edam:data_2787
+ description: A unique identifier of a whole genome assigned by the NCBI.
+ meaning: edam:data_2787
+ title: NCBI genome accession
+ edam:data_2789:
+ text: edam:data_2789
+ description: Unique identifier for a membrane protein from the TopDB database.
+ meaning: edam:data_2789
+ title: Protein ID (TopDB)
+ edam:data_2790:
+ text: edam:data_2790
+ description: Identifier of a two-dimensional (protein) gel.
+ meaning: edam:data_2790
+ title: Gel ID
+ edam:data_2791:
+ text: edam:data_2791
+ description: Name of a reference map gel from the SWISS-2DPAGE database.
+ meaning: edam:data_2791
+ title: Reference map name (SWISS-2DPAGE)
+ edam:data_2792:
+ text: edam:data_2792
+ description: Unique identifier for a peroxidase protein from the PeroxiBase
+ database.
+ meaning: edam:data_2792
+ title: Protein ID (PeroxiBase)
+ edam:data_2793:
+ text: edam:data_2793
+ description: Identifier of an entry from the SISYPHUS database of tertiary
+ structure alignments.
+ meaning: edam:data_2793
+ title: SISYPHUS ID
+ edam:data_2794:
+ text: edam:data_2794
+ description: Accession of an open reading frame (catalogued in a database).
+ meaning: edam:data_2794
+ title: ORF ID
+ edam:data_2795:
+ text: edam:data_2795
+ description: An identifier of an open reading frame.
+ meaning: edam:data_2795
+ title: ORF identifier
+ edam:data_2796:
+ text: edam:data_2796
+ description: Identifier of an entry from the GlycosciencesDB database.
+ meaning: edam:data_2796
+ title: LINUCS ID
+ edam:data_2797:
+ text: edam:data_2797
+ description: Unique identifier for a ligand-gated ion channel protein from
+ the LGICdb database.
+ meaning: edam:data_2797
+ title: Protein ID (LGICdb)
+ edam:data_2798:
+ text: edam:data_2798
+ description: Identifier of an EST sequence from the MaizeDB database.
+ meaning: edam:data_2798
+ title: MaizeDB ID
+ edam:data_2799:
+ text: edam:data_2799
+ description: A unique identifier of gene in the MfunGD database.
+ meaning: edam:data_2799
+ title: Gene ID (MfunGD)
+ edam:data_2800:
+ text: edam:data_2800
+ description: An identifier of a disease from the Orpha database.
+ meaning: edam:data_2800
+ title: Orpha number
+ edam:data_2802:
+ text: edam:data_2802
+ description: Unique identifier for a protein from the EcID database.
+ meaning: edam:data_2802
+ title: Protein ID (EcID)
+ edam:data_2803:
+ text: edam:data_2803
+ description: A unique identifier of a cDNA molecule catalogued in the RefSeq
+ database.
+ meaning: edam:data_2803
+ title: Clone ID (RefSeq)
+ edam:data_2804:
+ text: edam:data_2804
+ description: Unique identifier for a cone snail toxin protein from the ConoServer
+ database.
+ meaning: edam:data_2804
+ title: Protein ID (ConoServer)
+ edam:data_2805:
+ text: edam:data_2805
+ description: Identifier of a GeneSNP database entry.
+ meaning: edam:data_2805
+ title: GeneSNP ID
+ edam:data_2812:
+ text: edam:data_2812
+ description: Identifier of a lipid.
+ meaning: edam:data_2812
+ title: Lipid identifier
+ edam:data_2835:
+ text: edam:data_2835
+ description: Identifier for a gene from the VBASE2 database.
+ meaning: edam:data_2835
+ title: Gene ID (VBASE2)
+ edam:data_2836:
+ text: edam:data_2836
+ description: A unique identifier for a virus from the DPVweb database.
+ meaning: edam:data_2836
+ title: DPVweb ID
+ edam:data_2837:
+ text: edam:data_2837
+ description: Identifier of a pathway from the BioSystems pathway database.
+ meaning: edam:data_2837
+ title: Pathway ID (BioSystems)
+ edam:data_2849:
+ text: edam:data_2849
+ description: An abstract of a scientific article.
+ meaning: edam:data_2849
+ title: Abstract
+ edam:data_2850:
+ text: edam:data_2850
+ description: 3D coordinate and associated data for a lipid structure.
+ meaning: edam:data_2850
+ title: Lipid structure
+ edam:data_2851:
+ text: edam:data_2851
+ description: 3D coordinate and associated data for the (3D) structure of a
+ drug.
+ meaning: edam:data_2851
+ title: Drug structure
+ edam:data_2852:
+ text: edam:data_2852
+ description: 3D coordinate and associated data for the (3D) structure of a
+ toxin.
+ meaning: edam:data_2852
+ title: Toxin structure
+ edam:data_2854:
+ text: edam:data_2854
+ description: A simple matrix of numbers, where each value (or column of values)
+ is derived derived from analysis of the corresponding position in a sequence
+ alignment.
+ meaning: edam:data_2854
+ title: Position-specific scoring matrix
+ edam:data_2855:
+ text: edam:data_2855
+ description: A matrix of distances between molecular entities, where a value
+ (distance) is (typically) derived from comparison of two entities and reflects
+ their similarity.
+ meaning: edam:data_2855
+ title: Distance matrix
+ edam:data_2856:
+ text: edam:data_2856
+ description: Distances (values representing similarity) between a group of
+ molecular structures.
+ meaning: edam:data_2856
+ title: Structural distance matrix
+ edam:data_2858:
+ text: edam:data_2858
+ description: A concept from a biological ontology.
+ meaning: edam:data_2858
+ title: Ontology concept
+ edam:data_2865:
+ text: edam:data_2865
+ description: A numerical measure of differences in the frequency of occurrence
+ of synonymous codons in DNA sequences.
+ meaning: edam:data_2865
+ title: Codon usage bias
+ edam:data_2870:
+ text: edam:data_2870
+ description: A map showing distance between genetic markers estimated by radiation-induced
+ breaks in a chromosome.
+ meaning: edam:data_2870
+ title: Radiation hybrid map
+ edam:data_2872:
+ text: edam:data_2872
+ description: A simple list of data identifiers (such as database accessions),
+ possibly with additional basic information on the addressed data.
+ meaning: edam:data_2872
+ title: ID list
+ edam:data_2873:
+ text: edam:data_2873
+ description: Gene frequencies data that may be read during phylogenetic tree
+ calculation.
+ meaning: edam:data_2873
+ title: Phylogenetic gene frequencies data
+ edam:data_2877:
+ text: edam:data_2877
+ description: 3D coordinate and associated data for a multi-protein complex;
+ two or more polypeptides chains in a stable, functional association with
+ one another.
+ meaning: edam:data_2877
+ title: Protein complex
+ edam:data_2878:
+ text: edam:data_2878
+ description: 3D coordinate and associated data for a protein (3D) structural
+ motif; any group of contiguous or non-contiguous amino acid residues but
+ typically those forming a feature with a structural or functional role.
+ meaning: edam:data_2878
+ title: Protein structural motif
+ edam:data_2879:
+ text: edam:data_2879
+ description: A human-readable collection of information about one or more
+ specific lipid 3D structure(s).
+ meaning: edam:data_2879
+ title: Lipid report
+ edam:data_2884:
+ text: edam:data_2884
+ description: Biological data that has been plotted as a graph of some type,
+ or plotting instructions for rendering such a graph.
+ meaning: edam:data_2884
+ title: Plot
+ edam:data_2886:
+ text: edam:data_2886
+ description: A protein sequence and associated metadata.
+ meaning: edam:data_2886
+ title: Protein sequence record
+ edam:data_2887:
+ text: edam:data_2887
+ description: A nucleic acid sequence and associated metadata.
+ meaning: edam:data_2887
+ title: Nucleic acid sequence record
+ edam:data_2891:
+ text: edam:data_2891
+ description: Accession of a mathematical model, typically an entry from a
+ database.
+ meaning: edam:data_2891
+ title: Biological model accession
+ edam:data_2892:
+ text: edam:data_2892
+ description: The name of a type or group of cells.
+ meaning: edam:data_2892
+ title: Cell type name
+ edam:data_2893:
+ text: edam:data_2893
+ description: Accession of a type or group of cells (catalogued in a database).
+ meaning: edam:data_2893
+ title: Cell type accession
+ edam:data_2894:
+ text: edam:data_2894
+ description: Accession of an entry from a database of chemicals.
+ meaning: edam:data_2894
+ title: Compound accession
+ edam:data_2895:
+ text: edam:data_2895
+ description: Accession of a drug.
+ meaning: edam:data_2895
+ title: Drug accession
+ edam:data_2896:
+ text: edam:data_2896
+ description: Name of a toxin.
+ meaning: edam:data_2896
+ title: Toxin name
+ edam:data_2897:
+ text: edam:data_2897
+ description: Accession of a toxin (catalogued in a database).
+ meaning: edam:data_2897
+ title: Toxin accession
+ edam:data_2898:
+ text: edam:data_2898
+ description: Accession of a monosaccharide (catalogued in a database).
+ meaning: edam:data_2898
+ title: Monosaccharide accession
+ edam:data_2899:
+ text: edam:data_2899
+ description: Common name of a drug.
+ meaning: edam:data_2899
+ title: Drug name
+ edam:data_2900:
+ text: edam:data_2900
+ description: Accession of an entry from a database of carbohydrates.
+ meaning: edam:data_2900
+ title: Carbohydrate accession
+ edam:data_2901:
+ text: edam:data_2901
+ description: Molecule accession is any persistent, unique identifier of a
+ specific molecule (catalogued in a database).
+ meaning: edam:data_2901
+ title: Molecule accession
+ edam:data_2902:
+ text: edam:data_2902
+ description: Accession of a data definition (catalogued in a database).
+ meaning: edam:data_2902
+ title: Data resource definition accession
+ edam:data_2903:
+ text: edam:data_2903
+ description: An accession of a particular genome (in a database).
+ meaning: edam:data_2903
+ title: Genome accession
+ edam:data_2904:
+ text: edam:data_2904
+ description: An accession of a map of a molecular sequence (deposited in a
+ database).
+ meaning: edam:data_2904
+ title: Map accession
+ edam:data_2905:
+ text: edam:data_2905
+ description: Accession of an entry from a database of lipids.
+ meaning: edam:data_2905
+ title: Lipid accession
+ edam:data_2906:
+ text: edam:data_2906
+ description: Accession of a peptide deposited in a database.
+ meaning: edam:data_2906
+ title: Peptide ID
+ edam:data_2907:
+ text: edam:data_2907
+ description: Accession of a protein deposited in a database.
+ meaning: edam:data_2907
+ title: Protein accession
+ edam:data_2908:
+ text: edam:data_2908
+ description: An accession of annotation on a (group of) organisms (catalogued
+ in a database).
+ meaning: edam:data_2908
+ title: Organism accession
+ edam:data_2909:
+ text: edam:data_2909
+ description: The name of an organism (or group of organisms).
+ meaning: edam:data_2909
+ title: Organism name
+ edam:data_2910:
+ text: edam:data_2910
+ description: Accession of a protein family (that is deposited in a database).
+ meaning: edam:data_2910
+ title: Protein family accession
+ edam:data_2911:
+ text: edam:data_2911
+ description: Accession of an entry from a database of transcription factors
+ or binding sites.
+ meaning: edam:data_2911
+ title: Transcription factor accession
+ edam:data_2912:
+ text: edam:data_2912
+ description: Accession number of a strain of an organism variant, typically
+ a plant, virus or bacterium.
+ meaning: edam:data_2912
+ title: Strain accession
+ edam:data_2914:
+ text: edam:data_2914
+ description: Metadata on sequence features.
+ meaning: edam:data_2914
+ title: Sequence features metadata
+ edam:data_2915:
+ text: edam:data_2915
+ description: Identifier of a Gramene database entry.
+ meaning: edam:data_2915
+ title: Gramene identifier
+ edam:data_2916:
+ text: edam:data_2916
+ description: An identifier of an entry from the DDBJ sequence database.
+ meaning: edam:data_2916
+ title: DDBJ accession
+ edam:data_2917:
+ text: edam:data_2917
+ description: An identifier of an entity from the ConsensusPathDB database.
+ meaning: edam:data_2917
+ title: ConsensusPathDB identifier
+ edam:data_2955:
+ text: edam:data_2955
+ description: An informative report of information about molecular sequence(s),
+ including basic information (metadata), and reports generated from molecular
+ sequence analysis, including positional features and non-positional properties.
+ meaning: edam:data_2955
+ title: Sequence report
+ edam:data_2956:
+ text: edam:data_2956
+ description: Data concerning the properties or features of one or more protein
+ secondary structures.
+ meaning: edam:data_2956
+ title: Protein secondary structure
+ edam:data_2957:
+ text: edam:data_2957
+ description: A Hopp and Woods plot of predicted antigenicity of a peptide
+ or protein.
+ meaning: edam:data_2957
+ title: Hopp and Woods plot
+ edam:data_2968:
+ text: edam:data_2968
+ description: Data (typically biological or biomedical) that has been rendered
+ into an image, typically for display on screen.
+ meaning: edam:data_2968
+ title: Image
+ edam:data_2969:
+ text: edam:data_2969
+ description: Image of a molecular sequence, possibly with sequence features
+ or properties shown.
+ meaning: edam:data_2969
+ title: Sequence image
+ edam:data_2970:
+ text: edam:data_2970
+ description: A report on protein properties concerning hydropathy.
+ meaning: edam:data_2970
+ title: Protein hydropathy data
+ edam:data_2976:
+ text: edam:data_2976
+ description: One or more protein sequences, possibly with associated annotation.
+ meaning: edam:data_2976
+ title: Protein sequence
+ edam:data_2977:
+ text: edam:data_2977
+ description: One or more nucleic acid sequences, possibly with associated
+ annotation.
+ meaning: edam:data_2977
+ title: Nucleic acid sequence
+ edam:data_2978:
+ text: edam:data_2978
+ description: Data concerning a biochemical reaction, typically data and more
+ general annotation on the kinetics of enzyme-catalysed reaction.
+ meaning: edam:data_2978
+ title: Reaction data
+ edam:data_2979:
+ text: edam:data_2979
+ description: Data concerning small peptides.
+ meaning: edam:data_2979
+ title: Peptide property
+ edam:data_2984:
+ text: edam:data_2984
+ description: An informative report concerning or derived from the analysis
+ of a biological pathway or network, such as a map (diagram) or annotation.
+ meaning: edam:data_2984
+ title: Pathway or network report
+ edam:data_2985:
+ text: edam:data_2985
+ description: A thermodynamic or kinetic property of a nucleic acid molecule.
+ meaning: edam:data_2985
+ title: Nucleic acid thermodynamic data
+ edam:data_2991:
+ text: edam:data_2991
+ description: Geometry data for a protein structure, for example bond lengths,
+ bond angles, torsion angles, chiralities, planaraties etc.
+ meaning: edam:data_2991
+ title: Protein geometry data
+ edam:data_2992:
+ text: edam:data_2992
+ description: An image of protein structure.
+ meaning: edam:data_2992
+ title: Protein structure image
+ edam:data_2994:
+ text: edam:data_2994
+ description: Weights for sequence positions or characters in phylogenetic
+ analysis where zero is defined as unweighted.
+ meaning: edam:data_2994
+ title: Phylogenetic character weights
+ edam:data_3002:
+ text: edam:data_3002
+ description: Annotation of one particular positional feature on a biomolecular
+ (typically genome) sequence, suitable for import and display in a genome
+ browser.
+ meaning: edam:data_3002
+ title: Annotation track
+ edam:data_3021:
+ text: edam:data_3021
+ description: Accession number of a UniProt (protein sequence) database entry.
+ meaning: edam:data_3021
+ title: UniProt accession
+ edam:data_3022:
+ text: edam:data_3022
+ description: Identifier of a genetic code in the NCBI list of genetic codes.
+ meaning: edam:data_3022
+ title: NCBI genetic code ID
+ edam:data_3025:
+ text: edam:data_3025
+ description: Identifier of a concept in an ontology of biological or bioinformatics
+ concepts and relations.
+ meaning: edam:data_3025
+ title: Ontology concept identifier
+ edam:data_3028:
+ text: edam:data_3028
+ description: Data concerning the classification, identification and naming
+ of organisms.
+ meaning: edam:data_3028
+ title: Taxonomy
+ edam:data_3029:
+ text: edam:data_3029
+ description: EMBL/GENBANK/DDBJ coding feature protein identifier, issued by
+ International collaborators.
+ meaning: edam:data_3029
+ title: Protein ID (EMBL/GenBank/DDBJ)
+ edam:data_3034:
+ text: edam:data_3034
+ description: Name or other identifier of molecular sequence feature(s).
+ meaning: edam:data_3034
+ title: Sequence feature identifier
+ edam:data_3035:
+ text: edam:data_3035
+ description: An identifier of a molecular tertiary structure, typically an
+ entry from a structure database.
+ meaning: edam:data_3035
+ title: Structure identifier
+ edam:data_3036:
+ text: edam:data_3036
+ description: An identifier of an array of numerical values, such as a comparison
+ matrix.
+ meaning: edam:data_3036
+ title: Matrix identifier
+ edam:data_3103:
+ text: edam:data_3103
+ description: Unique identifier of a drug conforming to the Anatomical Therapeutic
+ Chemical (ATC) Classification System, a drug classification system controlled
+ by the WHO Collaborating Centre for Drug Statistics Methodology (WHOCC).
+ meaning: edam:data_3103
+ title: ATC code
+ edam:data_3104:
+ text: edam:data_3104
+ description: A unique, unambiguous, alphanumeric identifier of a chemical
+ substance as catalogued by the Substance Registration System of the Food
+ and Drug Administration (FDA).
+ meaning: edam:data_3104
+ title: UNII
+ edam:data_3106:
+ text: edam:data_3106
+ description: Metadata concerning the software, hardware or other aspects of
+ a computer system.
+ meaning: edam:data_3106
+ title: System metadata
+ edam:data_3108:
+ text: edam:data_3108
+ description: Raw data such as measurements or other results from laboratory
+ experiments, as generated from laboratory hardware.
+ meaning: edam:data_3108
+ title: Experimental measurement
+ edam:data_3110:
+ text: edam:data_3110
+ description: Raw data (typically MIAME-compliant) for hybridisations from
+ a microarray experiment.
+ meaning: edam:data_3110
+ title: Raw microarray data
+ edam:data_3111:
+ text: edam:data_3111
+ description: Data generated from processing and analysis of probe set data
+ from a microarray experiment.
+ meaning: edam:data_3111
+ title: Processed microarray data
+ edam:data_3112:
+ text: edam:data_3112
+ description: The final processed (normalised) data for a set of hybridisations
+ in a microarray experiment.
+ meaning: edam:data_3112
+ title: Gene expression matrix
+ edam:data_3113:
+ text: edam:data_3113
+ description: Annotation on a biological sample, for example experimental factors
+ and their values.
+ meaning: edam:data_3113
+ title: Sample annotation
+ edam:data_3115:
+ text: edam:data_3115
+ description: Annotation on the array itself used in a microarray experiment.
+ meaning: edam:data_3115
+ title: Microarray metadata
+ edam:data_3117:
+ text: edam:data_3117
+ description: Data concerning the hybridisations measured during a microarray
+ experiment.
+ meaning: edam:data_3117
+ title: Microarray hybridisation data
+ edam:data_3128:
+ text: edam:data_3128
+ description: A human-readable collection of information about regions within
+ a nucleic acid sequence which form secondary or tertiary (3D) structures.
+ meaning: edam:data_3128
+ title: Nucleic acid structure report
+ edam:data_3134:
+ text: edam:data_3134
+ description: An informative report on features of a messenger RNA (mRNA) molecules
+ including precursor RNA, primary (unprocessed) transcript and fully processed
+ molecules. This includes reports on a specific gene transcript, clone or
+ EST.
+ meaning: edam:data_3134
+ title: Gene transcript report
+ edam:data_3148:
+ text: edam:data_3148
+ description: A human-readable collection of information about a particular
+ family of genes, typically a set of genes with similar sequence that originate
+ from duplication of a common ancestor gene, or any other classification
+ of nucleic acid sequences or structures that reflects gene structure.
+ meaning: edam:data_3148
+ title: Gene family report
+ edam:data_3153:
+ text: edam:data_3153
+ description: An image of a protein.
+ meaning: edam:data_3153
+ title: Protein image
+ edam:data_3181:
+ text: edam:data_3181
+ description: An informative report about a DNA sequence assembly.
+ meaning: edam:data_3181
+ title: Sequence assembly report
+ edam:data_3210:
+ text: edam:data_3210
+ description: An index of a genome sequence.
+ meaning: edam:data_3210
+ title: Genome index
+ edam:data_3236:
+ text: edam:data_3236
+ description: The position of a cytogenetic band in a genome.
+ meaning: edam:data_3236
+ title: Cytoband position
+ edam:data_3238:
+ text: edam:data_3238
+ description: Cell type ontology concept ID.
+ meaning: edam:data_3238
+ title: Cell type ontology ID
+ edam:data_3241:
+ text: edam:data_3241
+ description: Mathematical model of a network, that contains biochemical kinetics.
+ meaning: edam:data_3241
+ title: Kinetic model
+ edam:data_3264:
+ text: edam:data_3264
+ description: Identifier of a COSMIC database entry.
+ meaning: edam:data_3264
+ title: COSMIC ID
+ edam:data_3265:
+ text: edam:data_3265
+ description: Identifier of a HGMD database entry.
+ meaning: edam:data_3265
+ title: HGMD ID
+ edam:data_3266:
+ text: edam:data_3266
+ description: Unique identifier of sequence assembly.
+ meaning: edam:data_3266
+ title: Sequence assembly ID
+ edam:data_3270:
+ text: edam:data_3270
+ description: Unique identifier for a gene tree from the Ensembl database.
+ meaning: edam:data_3270
+ title: Ensembl gene tree ID
+ edam:data_3271:
+ text: edam:data_3271
+ description: A phylogenetic tree that is an estimate of the character's phylogeny.
+ meaning: edam:data_3271
+ title: Gene tree
+ edam:data_3272:
+ text: edam:data_3272
+ description: A phylogenetic tree that reflects phylogeny of the taxa from
+ which the characters (used in calculating the tree) were sampled.
+ meaning: edam:data_3272
+ title: Species tree
+ edam:data_3273:
+ text: edam:data_3273
+ description: Name or other identifier of an entry from a biosample database.
+ meaning: edam:data_3273
+ title: Sample ID
+ edam:data_3274:
+ text: edam:data_3274
+ description: Identifier of an object from the MGI database.
+ meaning: edam:data_3274
+ title: MGI accession
+ edam:data_3275:
+ text: edam:data_3275
+ description: Name of a phenotype.
+ meaning: edam:data_3275
+ title: Phenotype name
+ edam:data_3354:
+ text: edam:data_3354
+ description: A HMM transition matrix contains the probabilities of switching
+ from one HMM state to another.
+ meaning: edam:data_3354
+ title: Transition matrix
+ edam:data_3355:
+ text: edam:data_3355
+ description: A HMM emission matrix holds the probabilities of choosing the
+ four nucleotides (A, C, G and T) in each of the states of a HMM.
+ meaning: edam:data_3355
+ title: Emission matrix
+ edam:data_3358:
+ text: edam:data_3358
+ description: An identifier of a data format.
+ meaning: edam:data_3358
+ title: Format identifier
+ edam:data_3424:
+ text: edam:data_3424
+ description: Raw biological or biomedical image generated by some experimental
+ technique.
+ meaning: edam:data_3424
+ title: Raw image
+ edam:data_3425:
+ text: edam:data_3425
+ description: Data concerning the intrinsic physical (e.g. structural) or chemical
+ properties of one, more or all carbohydrates.
+ meaning: edam:data_3425
+ title: Carbohydrate property
+ edam:data_3442:
+ text: edam:data_3442
+ description: An imaging technique that uses magnetic fields and radiowaves
+ to form images, typically to investigate the anatomy and physiology of the
+ human body.
+ meaning: edam:data_3442
+ title: MRI image
+ edam:data_3449:
+ text: edam:data_3449
+ description: An image from a cell migration track assay.
+ meaning: edam:data_3449
+ title: Cell migration track image
+ edam:data_3451:
+ text: edam:data_3451
+ description: Rate of association of a protein with another protein or some
+ other molecule.
+ meaning: edam:data_3451
+ title: Rate of association
+ edam:data_3479:
+ text: edam:data_3479
+ description: Multiple gene identifiers in a specific order.
+ meaning: edam:data_3479
+ title: Gene order
+ edam:data_3483:
+ text: edam:data_3483
+ description: The spectrum of frequencies of electromagnetic radiation emitted
+ from a molecule as a result of some spectroscopy experiment.
+ meaning: edam:data_3483
+ title: Spectrum
+ edam:data_3488:
+ text: edam:data_3488
+ description: Spectral information for a molecule from a nuclear magnetic resonance
+ experiment.
+ meaning: edam:data_3488
+ title: NMR spectrum
+ edam:data_3492:
+ text: edam:data_3492
+ description: An informative report about a specific or conserved nucleic acid
+ sequence pattern.
+ meaning: edam:data_3492
+ title: Nucleic acid signature
+ edam:data_3494:
+ text: edam:data_3494
+ description: A DNA sequence.
+ meaning: edam:data_3494
+ title: DNA sequence
+ edam:data_3495:
+ text: edam:data_3495
+ description: An RNA sequence.
+ meaning: edam:data_3495
+ title: RNA sequence
+ edam:data_3498:
+ text: edam:data_3498
+ description: Data on gene sequence variations resulting large-scale genotyping
+ and DNA sequencing projects.
+ meaning: edam:data_3498
+ title: Sequence variations
+ edam:data_3505:
+ text: edam:data_3505
+ description: A list of publications such as scientic papers or books.
+ meaning: edam:data_3505
+ title: Bibliography
+ edam:data_3509:
+ text: edam:data_3509
+ description: A mapping of supplied textual terms or phrases to ontology concepts
+ (URIs).
+ meaning: edam:data_3509
+ title: Ontology mapping
+ edam:data_3546:
+ text: edam:data_3546
+ description: Any data concerning a specific biological or biomedical image.
+ meaning: edam:data_3546
+ title: Image metadata
+ edam:data_3558:
+ text: edam:data_3558
+ description: A human-readable collection of information concerning a clinical
+ trial.
+ meaning: edam:data_3558
+ title: Clinical trial report
+ edam:data_3567:
+ text: edam:data_3567
+ description: A report about a biosample.
+ meaning: edam:data_3567
+ title: Reference sample report
+ edam:data_3568:
+ text: edam:data_3568
+ description: Accession number of an entry from the Gene Expression Atlas.
+ meaning: edam:data_3568
+ title: Gene Expression Atlas Experiment ID
+ edam:data_3667:
+ text: edam:data_3667
+ description: Identifier of an entry from a database of disease.
+ meaning: edam:data_3667
+ title: Disease identifier
+ edam:data_3668:
+ text: edam:data_3668
+ description: The name of some disease.
+ meaning: edam:data_3668
+ title: Disease name
+ edam:data_3669:
+ text: edam:data_3669
+ description: Learning material is a document or another digital object that
+ is designed for learning (educational, training) purposes.
+ meaning: edam:data_3669
+ title: Learning material
+ edam:data_3670:
+ text: edam:data_3670
+ description: A training course available for use on the Web.
+ meaning: edam:data_3670
+ title: Online course
+ edam:data_3671:
+ text: edam:data_3671
+ description: Any free or plain text, typically for human consumption and in
+ English. Can instantiate also as a textual search query.
+ meaning: edam:data_3671
+ title: Text
+ edam:data_3707:
+ text: edam:data_3707
+ description: Machine-readable biodiversity data.
+ meaning: edam:data_3707
+ title: Biodiversity data
+ edam:data_3716:
+ text: edam:data_3716
+ description: A human-readable collection of information concerning biosafety
+ data.
+ meaning: edam:data_3716
+ title: Biosafety report
+ edam:data_3717:
+ text: edam:data_3717
+ description: A report about any kind of isolation of biological material.
+ meaning: edam:data_3717
+ title: Isolation report
+ edam:data_3718:
+ text: edam:data_3718
+ description: Information about the ability of an organism to cause disease
+ in a corresponding host.
+ meaning: edam:data_3718
+ title: Pathogenicity report
+ edam:data_3719:
+ text: edam:data_3719
+ description: Information about the biosafety classification of an organism
+ according to corresponding law.
+ meaning: edam:data_3719
+ title: Biosafety classification
+ edam:data_3720:
+ text: edam:data_3720
+ description: A report about localisation of the isolaton of biological material
+ e.g. country or coordinates.
+ meaning: edam:data_3720
+ title: Geographic location
+ edam:data_3721:
+ text: edam:data_3721
+ description: A report about any kind of isolation source of biological material
+ e.g. blood, water, soil.
+ meaning: edam:data_3721
+ title: Isolation source
+ edam:data_3722:
+ text: edam:data_3722
+ description: Experimentally determined parameter of the physiology of an organism,
+ e.g. substrate spectrum.
+ meaning: edam:data_3722
+ title: Physiology parameter
+ edam:data_3723:
+ text: edam:data_3723
+ description: Experimentally determined parameter of the morphology of an organism,
+ e.g. size & shape.
+ meaning: edam:data_3723
+ title: Morphology parameter
+ edam:data_3724:
+ text: edam:data_3724
+ description: Experimental determined parameter for the cultivation of an organism.
+ meaning: edam:data_3724
+ title: Cultivation parameter
+ edam:data_3732:
+ text: edam:data_3732
+ description: Data concerning a sequencing experiment, that may be specified
+ as an input to some tool.
+ meaning: edam:data_3732
+ title: Sequencing metadata name
+ edam:data_3733:
+ text: edam:data_3733
+ description: An identifier of a flow cell of a sequencing machine.
+ meaning: edam:data_3733
+ title: Flow cell identifier
+ edam:data_3734:
+ text: edam:data_3734
+ description: An identifier of a lane within a flow cell of a sequencing machine,
+ within which millions of sequences are immobilised, amplified and sequenced.
+ meaning: edam:data_3734
+ title: Lane identifier
+ edam:data_3735:
+ text: edam:data_3735
+ description: A number corresponding to the number of an analysis performed
+ by a sequencing machine. For example, if it's the 13th analysis, the run
+ is 13.
+ meaning: edam:data_3735
+ title: Run number
+ edam:data_3736:
+ text: edam:data_3736
+ description: Data concerning ecology; for example measurements and reports
+ from the study of interactions among organisms and their environment.
+ meaning: edam:data_3736
+ title: Ecological data
+ edam:data_3737:
+ text: edam:data_3737
+ description: The mean species diversity in sites or habitats at a local scale.
+ meaning: edam:data_3737
+ title: Alpha diversity data
+ edam:data_3738:
+ text: edam:data_3738
+ description: The ratio between regional and local species diversity.
+ meaning: edam:data_3738
+ title: Beta diversity data
+ edam:data_3739:
+ text: edam:data_3739
+ description: The total species diversity in a landscape.
+ meaning: edam:data_3739
+ title: Gamma diversity data
+ edam:data_3743:
+ text: edam:data_3743
+ description: A plot in which community data (e.g. species abundance data)
+ is summarised. Similar species and samples are plotted close together, and
+ dissimilar species and samples are plotted placed far apart.
+ meaning: edam:data_3743
+ title: Ordination plot
+ edam:data_3753:
+ text: edam:data_3753
+ description: A ranked list of categories (usually ontology concepts), each
+ associated with a statistical metric of over-/under-representation within
+ the studied data.
+ meaning: edam:data_3753
+ title: Over-representation data
+ edam:data_3754:
+ text: edam:data_3754
+ description: A ranked list of Gene Ontology concepts, each associated with
+ a p-value, concerning or derived from the analysis of e.g. a set of genes
+ or proteins.
+ meaning: edam:data_3754
+ title: GO-term enrichment data
+ edam:data_3756:
+ text: edam:data_3756
+ description: Score for localization of one or more post-translational modifications
+ in peptide sequence measured by mass spectrometry.
+ meaning: edam:data_3756
+ title: Localisation score
+ edam:data_3757:
+ text: edam:data_3757
+ description: Identifier of a protein modification catalogued in the Unimod
+ database.
+ meaning: edam:data_3757
+ title: Unimod ID
+ edam:data_3759:
+ text: edam:data_3759
+ description: Identifier for mass spectrometry proteomics data in the proteomexchange.org
+ repository.
+ meaning: edam:data_3759
+ title: ProteomeXchange ID
+ edam:data_3768:
+ text: edam:data_3768
+ description: Groupings of expression profiles according to a clustering algorithm.
+ meaning: edam:data_3768
+ title: Clustered expression profiles
+ edam:data_3769:
+ text: edam:data_3769
+ description: An identifier of a concept from the BRENDA ontology.
+ meaning: edam:data_3769
+ title: BRENDA ontology concept ID
+ edam:data_3779:
+ text: edam:data_3779
+ description: A text (such as a scientific article), annotated with notes,
+ data and metadata, such as recognised entities, concepts, and their relations.
+ meaning: edam:data_3779
+ title: Annotated text
+ edam:data_3786:
+ text: edam:data_3786
+ description: A structured query, in form of a script, that defines a database
+ search task.
+ meaning: edam:data_3786
+ title: Query script
+ edam:data_3805:
+ text: edam:data_3805
+ description: Structural 3D model (volume map) from electron microscopy.
+ meaning: edam:data_3805
+ title: 3D EM Map
+ edam:data_3806:
+ text: edam:data_3806
+ description: Annotation on a structural 3D EM Map from electron microscopy.
+ This might include one or several locations in the map of the known features
+ of a particular macromolecule.
+ meaning: edam:data_3806
+ title: 3D EM Mask
+ edam:data_3807:
+ text: edam:data_3807
+ description: Raw DDD movie acquisition from electron microscopy.
+ meaning: edam:data_3807
+ title: EM Movie
+ edam:data_3808:
+ text: edam:data_3808
+ description: Raw acquisition from electron microscopy or average of an aligned
+ DDD movie.
+ meaning: edam:data_3808
+ title: EM Micrograph
+ edam:data_3842:
+ text: edam:data_3842
+ description: Data coming from molecular simulations, computer "experiments"
+ on model molecules.
+ meaning: edam:data_3842
+ title: Molecular simulation data
+ edam:data_3856:
+ text: edam:data_3856
+ description: Identifier of an entry from the RNA central database of annotated
+ human miRNAs.
+ meaning: edam:data_3856
+ title: RNA central ID
+ edam:data_3861:
+ text: edam:data_3861
+ description: A human-readable systematic collection of patient (or population)
+ health information in a digital format.
+ meaning: edam:data_3861
+ title: Electronic health record
+ edam:data_3869:
+ text: edam:data_3869
+ description: 'Data coming from molecular simulations, computer "experiments"
+ on model molecules. Typically formed by two separated but indivisible pieces
+ of information: topology data (static) and trajectory data (dynamic).'
+ meaning: edam:data_3869
+ title: Simulation
+ edam:data_3870:
+ text: edam:data_3870
+ description: 'Dynamic information of a structure molecular system coming from
+ a molecular simulation: XYZ 3D coordinates (sometimes with their associated
+ velocities) for every atom along time.'
+ meaning: edam:data_3870
+ title: Trajectory data
+ edam:data_3871:
+ text: edam:data_3871
+ description: 'Force field parameters: charges, masses, radii, bond lengths,
+ bond dihedrals, etc. define the structural molecular system, and are essential
+ for the proper description and simulation of a molecular system.'
+ meaning: edam:data_3871
+ title: Forcefield parameters
+ edam:data_3872:
+ text: edam:data_3872
+ description: 'Static information of a structure molecular system that is needed
+ for a molecular simulation: the list of atoms, their non-bonded parameters
+ for Van der Waals and electrostatic interactions, and the complete connectivity
+ in terms of bonds, angles and dihedrals.'
+ meaning: edam:data_3872
+ title: Topology data
+ edam:data_3905:
+ text: edam:data_3905
+ description: Visualization of distribution of quantitative data, e.g. expression
+ data, by histograms, violin plots and density plots.
+ meaning: edam:data_3905
+ title: Histogram
+ edam:data_3914:
+ text: edam:data_3914
+ description: Report of the quality control review that was made of factors
+ involved in a procedure.
+ meaning: edam:data_3914
+ title: Quality control report
+ edam:data_3917:
+ text: edam:data_3917
+ description: A table of unnormalized values representing summarised read counts
+ per genomic region (e.g. gene, transcript, peak).
+ meaning: edam:data_3917
+ title: Count matrix
+ edam:data_3924:
+ text: edam:data_3924
+ description: Alignment (superimposition) of DNA tertiary (3D) structures.
+ meaning: edam:data_3924
+ title: DNA structure alignment
+ edam:data_3932:
+ text: edam:data_3932
+ description: 'A score derived from the P-value to ensure correction for multiple
+ tests. The Q-value provides an estimate of the positive False Discovery
+ Rate (pFDR), i.e. the rate of false positives among all the cases reported
+ positive: pFDR = FP / (FP + TP).'
+ meaning: edam:data_3932
+ title: Q-value
+ edam:data_3949:
+ text: edam:data_3949
+ description: A profile HMM is a variant of a Hidden Markov model that is derived
+ specifically from a set of (aligned) biological sequences. Profile HMMs
+ provide the basis for a position-specific scoring system, which can be used
+ to align sequences and search databases for related sequences.
+ meaning: edam:data_3949
+ title: Profile HMM
+ edam:data_3952:
+ text: edam:data_3952
+ description: Identifier of a pathway from the WikiPathways pathway database.
+ meaning: edam:data_3952
+ title: Pathway ID (WikiPathways)
+ edam:data_3953:
+ text: edam:data_3953
+ description: A ranked list of pathways, each associated with z-score, p-value
+ or similar, concerning or derived from the analysis of e.g. a set of genes
+ or proteins.
+ meaning: edam:data_3953
+ title: Pathway overrepresentation data
+ edam:data_4022:
+ text: edam:data_4022
+ description: Identifier of a researcher registered with the ORCID database.
+ Used to identify author IDs.
+ meaning: edam:data_4022
+ title: ORCID Identifier
+ edam:data_4040:
+ text: edam:data_4040
+ description: Data management plan is a document describing the data management
+ of a project or an organisation, including acquisition, reuse, structure,
+ processing, storage, documentation, sharing, and preservation of data. This
+ may include budgeting for these operations.
+ meaning: edam:data_4040
+ title: Data management plan
+ edam:data_4075:
+ text: edam:data_4075
+ description: RefMet ID is the unique, persistent identifier used by the RefMet
+ database (A Reference list of Metabolite names), a standardised reference
+ nomenclature for metabolites.
+ meaning: edam:data_4075
+ title: RefMet ID
+ reachable_from:
+ source_ontology: bioregistry:edam
+ source_nodes:
+ - edam:data_0006
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: false
+ EnumEDAMFormats:
+ name: EnumEDAMFormats
+ description: Data formats from the EDAM ontology.
+ from_schema: https://includedcc.org/common-access-model/EnumEDAMFormats
+ permissible_values:
+ edam:format_1196:
+ text: edam:format_1196
+ description: Chemical structure specified in Simplified Molecular Input Line
+ Entry System (SMILES) line notation.
+ meaning: edam:format_1196
+ title: SMILES
+ edam:format_1197:
+ text: edam:format_1197
+ description: Chemical structure specified in IUPAC International Chemical
+ Identifier (InChI) line notation.
+ meaning: edam:format_1197
+ title: InChI
+ edam:format_1198:
+ text: edam:format_1198
+ description: Chemical structure specified by Molecular Formula (MF), including
+ a count of each element in a compound.
+ meaning: edam:format_1198
+ title: mf
+ edam:format_1199:
+ text: edam:format_1199
+ description: The InChIKey (hashed InChI) is a fixed length (25 character)
+ condensed digital representation of an InChI chemical structure specification.
+ It uniquely identifies a chemical compound.
+ meaning: edam:format_1199
+ title: InChIKey
+ edam:format_1200:
+ text: edam:format_1200
+ description: SMILES ARbitrary Target Specification (SMARTS) format for chemical
+ structure specification, which is a subset of the SMILES line notation.
+ meaning: edam:format_1200
+ title: smarts
+ edam:format_1206:
+ text: edam:format_1206
+ description: Alphabet for a molecular sequence with possible unknown positions
+ but without ambiguity or non-sequence characters.
+ meaning: edam:format_1206
+ title: unambiguous pure
+ edam:format_1207:
+ text: edam:format_1207
+ description: Alphabet for a nucleotide sequence with possible ambiguity, unknown
+ positions and non-sequence characters.
+ meaning: edam:format_1207
+ title: nucleotide
+ edam:format_1208:
+ text: edam:format_1208
+ description: Alphabet for a protein sequence with possible ambiguity, unknown
+ positions and non-sequence characters.
+ meaning: edam:format_1208
+ title: protein
+ edam:format_1209:
+ text: edam:format_1209
+ description: Alphabet for the consensus of two or more molecular sequences.
+ meaning: edam:format_1209
+ title: consensus
+ edam:format_1210:
+ text: edam:format_1210
+ description: Alphabet for a nucleotide sequence with possible ambiguity and
+ unknown positions but without non-sequence characters.
+ meaning: edam:format_1210
+ title: pure nucleotide
+ edam:format_1211:
+ text: edam:format_1211
+ description: Alphabet for a nucleotide sequence (characters ACGTU only) with
+ possible unknown positions but without ambiguity or non-sequence characters
+ .
+ meaning: edam:format_1211
+ title: unambiguous pure nucleotide
+ edam:format_1212:
+ text: edam:format_1212
+ description: Alphabet for a DNA sequence with possible ambiguity, unknown
+ positions and non-sequence characters.
+ meaning: edam:format_1212
+ title: dna
+ edam:format_1213:
+ text: edam:format_1213
+ description: Alphabet for an RNA sequence with possible ambiguity, unknown
+ positions and non-sequence characters.
+ meaning: edam:format_1213
+ title: rna
+ edam:format_1214:
+ text: edam:format_1214
+ description: Alphabet for a DNA sequence (characters ACGT only) with possible
+ unknown positions but without ambiguity or non-sequence characters.
+ meaning: edam:format_1214
+ title: unambiguous pure dna
+ edam:format_1215:
+ text: edam:format_1215
+ description: Alphabet for a DNA sequence with possible ambiguity and unknown
+ positions but without non-sequence characters.
+ meaning: edam:format_1215
+ title: pure dna
+ edam:format_1216:
+ text: edam:format_1216
+ description: Alphabet for an RNA sequence (characters ACGU only) with possible
+ unknown positions but without ambiguity or non-sequence characters.
+ meaning: edam:format_1216
+ title: unambiguous pure rna sequence
+ edam:format_1217:
+ text: edam:format_1217
+ description: Alphabet for an RNA sequence with possible ambiguity and unknown
+ positions but without non-sequence characters.
+ meaning: edam:format_1217
+ title: pure rna
+ edam:format_1218:
+ text: edam:format_1218
+ description: Alphabet for any protein sequence with possible unknown positions
+ but without ambiguity or non-sequence characters.
+ meaning: edam:format_1218
+ title: unambiguous pure protein
+ edam:format_1219:
+ text: edam:format_1219
+ description: Alphabet for any protein sequence with possible ambiguity and
+ unknown positions but without non-sequence characters.
+ meaning: edam:format_1219
+ title: pure protein
+ edam:format_1248:
+ text: edam:format_1248
+ description: Format for sequence positions (feature location) as used in DDBJ/EMBL/GenBank
+ database.
+ meaning: edam:format_1248
+ title: EMBL feature location
+ edam:format_1295:
+ text: edam:format_1295
+ description: Report format for tandem repeats in a nucleotide sequence (format
+ generated by the Sanger Centre quicktandem program).
+ meaning: edam:format_1295
+ title: quicktandem
+ edam:format_1296:
+ text: edam:format_1296
+ description: Report format for inverted repeats in a nucleotide sequence (format
+ generated by the Sanger Centre inverted program).
+ meaning: edam:format_1296
+ title: Sanger inverted repeats
+ edam:format_1297:
+ text: edam:format_1297
+ description: Report format for tandem repeats in a sequence (an EMBOSS report
+ format).
+ meaning: edam:format_1297
+ title: EMBOSS repeat
+ edam:format_1316:
+ text: edam:format_1316
+ description: Format of a report on exon-intron structure generated by EMBOSS
+ est2genome.
+ meaning: edam:format_1316
+ title: est2genome format
+ edam:format_1318:
+ text: edam:format_1318
+ description: Report format for restriction enzyme recognition sites used by
+ EMBOSS restrict program.
+ meaning: edam:format_1318
+ title: restrict format
+ edam:format_1319:
+ text: edam:format_1319
+ description: Report format for restriction enzyme recognition sites used by
+ EMBOSS restover program.
+ meaning: edam:format_1319
+ title: restover format
+ edam:format_1320:
+ text: edam:format_1320
+ description: Report format for restriction enzyme recognition sites used by
+ REBASE database.
+ meaning: edam:format_1320
+ title: REBASE restriction sites
+ edam:format_1332:
+ text: edam:format_1332
+ description: Format of results of a sequence database search using FASTA.
+ meaning: edam:format_1332
+ title: FASTA search results format
+ edam:format_1333:
+ text: edam:format_1333
+ description: Format of results of a sequence database search using some variant
+ of BLAST.
+ meaning: edam:format_1333
+ title: BLAST results
+ edam:format_1334:
+ text: edam:format_1334
+ description: Format of results of a sequence database search using some variant
+ of MSPCrunch.
+ meaning: edam:format_1334
+ title: mspcrunch
+ edam:format_1335:
+ text: edam:format_1335
+ description: Format of results of a sequence database search using some variant
+ of Smith Waterman.
+ meaning: edam:format_1335
+ title: Smith-Waterman format
+ edam:format_1336:
+ text: edam:format_1336
+ description: Format of EMBASSY domain hits file (DHF) of hits (sequences)
+ with domain classification information.
+ meaning: edam:format_1336
+ title: dhf
+ edam:format_1337:
+ text: edam:format_1337
+ description: Format of EMBASSY ligand hits file (LHF) of database hits (sequences)
+ with ligand classification information.
+ meaning: edam:format_1337
+ title: lhf
+ edam:format_1341:
+ text: edam:format_1341
+ description: Results format for searches of the InterPro database.
+ meaning: edam:format_1341
+ title: InterPro hits format
+ edam:format_1342:
+ text: edam:format_1342
+ description: Format of results of a search of the InterPro database showing
+ matches of query protein sequence(s) to InterPro entries.
+ meaning: edam:format_1342
+ title: InterPro protein view report format
+ edam:format_1343:
+ text: edam:format_1343
+ description: Format of results of a search of the InterPro database showing
+ matches between protein sequence(s) and signatures for an InterPro entry.
+ meaning: edam:format_1343
+ title: InterPro match table format
+ edam:format_1349:
+ text: edam:format_1349
+ description: Dirichlet distribution HMMER format.
+ meaning: edam:format_1349
+ title: HMMER Dirichlet prior
+ edam:format_1350:
+ text: edam:format_1350
+ description: Dirichlet distribution MEME format.
+ meaning: edam:format_1350
+ title: MEME Dirichlet prior
+ edam:format_1351:
+ text: edam:format_1351
+ description: Format of a report from the HMMER package on the emission and
+ transition counts of a hidden Markov model.
+ meaning: edam:format_1351
+ title: HMMER emission and transition
+ edam:format_1356:
+ text: edam:format_1356
+ description: Format of a regular expression pattern from the Prosite database.
+ meaning: edam:format_1356
+ title: prosite-pattern
+ edam:format_1357:
+ text: edam:format_1357
+ description: Format of an EMBOSS sequence pattern.
+ meaning: edam:format_1357
+ title: EMBOSS sequence pattern
+ edam:format_1360:
+ text: edam:format_1360
+ description: A motif in the format generated by the MEME program.
+ meaning: edam:format_1360
+ title: meme-motif
+ edam:format_1366:
+ text: edam:format_1366
+ description: Sequence profile (sequence classifier) format used in the PROSITE
+ database.
+ meaning: edam:format_1366
+ title: prosite-profile
+ edam:format_1367:
+ text: edam:format_1367
+ description: A profile (sequence classifier) in the format used in the JASPAR
+ database.
+ meaning: edam:format_1367
+ title: JASPAR format
+ edam:format_1369:
+ text: edam:format_1369
+ description: Format of the model of random sequences used by MEME.
+ meaning: edam:format_1369
+ title: MEME background Markov model
+ edam:format_1370:
+ text: edam:format_1370
+ description: Format of a hidden Markov model representation used by the HMMER
+ package.
+ meaning: edam:format_1370
+ title: HMMER format
+ edam:format_1391:
+ text: edam:format_1391
+ description: FASTA-style format for multiple sequences aligned by HMMER package
+ to an HMM.
+ meaning: edam:format_1391
+ title: HMMER-aln
+ edam:format_1392:
+ text: edam:format_1392
+ description: Format of multiple sequences aligned by DIALIGN package.
+ meaning: edam:format_1392
+ title: DIALIGN format
+ edam:format_1393:
+ text: edam:format_1393
+ description: EMBASSY 'domain alignment file' (DAF) format, containing a sequence
+ alignment of protein domains belonging to the same SCOP or CATH family.
+ meaning: edam:format_1393
+ title: daf
+ edam:format_1419:
+ text: edam:format_1419
+ description: Format for alignment of molecular sequences to MEME profiles
+ (position-dependent scoring matrices) as generated by the MAST tool from
+ the MEME package.
+ meaning: edam:format_1419
+ title: Sequence-MEME profile alignment
+ edam:format_1421:
+ text: edam:format_1421
+ description: Format used by the HMMER package for an alignment of a sequence
+ against a hidden Markov model database.
+ meaning: edam:format_1421
+ title: HMMER profile alignment (sequences versus HMMs)
+ edam:format_1422:
+ text: edam:format_1422
+ description: Format used by the HMMER package for of an alignment of a hidden
+ Markov model against a sequence database.
+ meaning: edam:format_1422
+ title: HMMER profile alignment (HMM versus sequences)
+ edam:format_1423:
+ text: edam:format_1423
+ description: Format of PHYLIP phylogenetic distance matrix data.
+ meaning: edam:format_1423
+ title: Phylip distance matrix
+ edam:format_1424:
+ text: edam:format_1424
+ description: Dendrogram (tree file) format generated by ClustalW.
+ meaning: edam:format_1424
+ title: ClustalW dendrogram
+ edam:format_1425:
+ text: edam:format_1425
+ description: Raw data file format used by Phylip from which a phylogenetic
+ tree is directly generated or plotted.
+ meaning: edam:format_1425
+ title: Phylip tree raw
+ edam:format_1430:
+ text: edam:format_1430
+ description: PHYLIP file format for continuous quantitative character data.
+ meaning: edam:format_1430
+ title: Phylip continuous quantitative characters
+ edam:format_1432:
+ text: edam:format_1432
+ description: PHYLIP file format for phylogenetics character frequency data.
+ meaning: edam:format_1432
+ title: Phylip character frequencies format
+ edam:format_1433:
+ text: edam:format_1433
+ description: Format of PHYLIP discrete states data.
+ meaning: edam:format_1433
+ title: Phylip discrete states format
+ edam:format_1434:
+ text: edam:format_1434
+ description: Format of PHYLIP cliques data.
+ meaning: edam:format_1434
+ title: Phylip cliques format
+ edam:format_1435:
+ text: edam:format_1435
+ description: Phylogenetic tree data format used by the PHYLIP program.
+ meaning: edam:format_1435
+ title: Phylip tree format
+ edam:format_1436:
+ text: edam:format_1436
+ description: The format of an entry from the TreeBASE database of phylogenetic
+ data.
+ meaning: edam:format_1436
+ title: TreeBASE format
+ edam:format_1437:
+ text: edam:format_1437
+ description: The format of an entry from the TreeFam database of phylogenetic
+ data.
+ meaning: edam:format_1437
+ title: TreeFam format
+ edam:format_1445:
+ text: edam:format_1445
+ description: Format for distances, such as Branch Score distance, between
+ two or more phylogenetic trees as used by the Phylip package.
+ meaning: edam:format_1445
+ title: Phylip tree distance format
+ edam:format_1454:
+ text: edam:format_1454
+ description: Format of an entry from the DSSP database (Dictionary of Secondary
+ Structure in Proteins).
+ meaning: edam:format_1454
+ title: dssp
+ edam:format_1455:
+ text: edam:format_1455
+ description: Entry format of the HSSP database (Homology-derived Secondary
+ Structure in Proteins).
+ meaning: edam:format_1455
+ title: hssp
+ edam:format_1457:
+ text: edam:format_1457
+ description: Format of RNA secondary structure in dot-bracket notation, originally
+ generated by the Vienna RNA package/server.
+ meaning: edam:format_1457
+ title: Dot-bracket format
+ edam:format_1458:
+ text: edam:format_1458
+ description: Format of local RNA secondary structure components with free
+ energy values, generated by the Vienna RNA package/server.
+ meaning: edam:format_1458
+ title: Vienna local RNA secondary structure format
+ edam:format_1475:
+ text: edam:format_1475
+ description: Format of an entry (or part of an entry) from the PDB database.
+ meaning: edam:format_1475
+ title: PDB database entry format
+ edam:format_1476:
+ text: edam:format_1476
+ description: Entry format of PDB database in PDB format.
+ meaning: edam:format_1476
+ title: PDB
+ edam:format_1477:
+ text: edam:format_1477
+ description: Entry format of PDB database in mmCIF format.
+ meaning: edam:format_1477
+ title: mmCIF
+ edam:format_1478:
+ text: edam:format_1478
+ description: Entry format of PDB database in PDBML (XML) format.
+ meaning: edam:format_1478
+ title: PDBML
+ edam:format_1504:
+ text: edam:format_1504
+ description: Amino acid index format used by the AAindex database.
+ meaning: edam:format_1504
+ title: aaindex
+ edam:format_1551:
+ text: edam:format_1551
+ description: Format of output of the Pcons Model Quality Assessment Program
+ (MQAP).
+ meaning: edam:format_1551
+ title: Pcons report format
+ edam:format_1552:
+ text: edam:format_1552
+ description: Format of output of the ProQ protein model quality predictor.
+ meaning: edam:format_1552
+ title: ProQ report format
+ edam:format_1582:
+ text: edam:format_1582
+ description: A report format for the kinetics of enzyme-catalysed reaction(s)
+ in a format generated by EMBOSS findkm. This includes Michaelis Menten plot,
+ Hanes Woolf plot, Michaelis Menten constant (Km) and maximum velocity (Vmax).
+ meaning: edam:format_1582
+ title: findkm
+ edam:format_1627:
+ text: edam:format_1627
+ description: Report format on PCR primers and hybridisation oligos as generated
+ by Whitehead primer3 program.
+ meaning: edam:format_1627
+ title: Primer3 primer
+ edam:format_1628:
+ text: edam:format_1628
+ description: A format of raw sequence read data from an Applied Biosystems
+ sequencing machine.
+ meaning: edam:format_1628
+ title: ABI
+ edam:format_1629:
+ text: edam:format_1629
+ description: Format of MIRA sequence trace information file.
+ meaning: edam:format_1629
+ title: mira
+ edam:format_1630:
+ text: edam:format_1630
+ description: Common Assembly Format (CAF). A sequence assembly format including
+ contigs, base-call qualities, and other metadata.
+ meaning: edam:format_1630
+ title: CAF
+ edam:format_1631:
+ text: edam:format_1631
+ description: Sequence assembly project file EXP format.
+ meaning: edam:format_1631
+ title: EXP
+ edam:format_1632:
+ text: edam:format_1632
+ description: Staden Chromatogram Files format (SCF) of base-called sequence
+ reads, qualities, and other metadata.
+ meaning: edam:format_1632
+ title: SCF
+ edam:format_1633:
+ text: edam:format_1633
+ description: PHD sequence trace format to store serialised chromatogram data
+ (reads).
+ meaning: edam:format_1633
+ title: PHD
+ edam:format_1637:
+ text: edam:format_1637
+ description: Format of Affymetrix data file of raw image data.
+ meaning: edam:format_1637
+ title: dat
+ edam:format_1638:
+ text: edam:format_1638
+ description: Format of Affymetrix data file of information about (raw) expression
+ levels of the individual probes.
+ meaning: edam:format_1638
+ title: cel
+ edam:format_1639:
+ text: edam:format_1639
+ description: Format of affymetrix gene cluster files (hc-genes.txt, hc-chips.txt)
+ from hierarchical clustering.
+ meaning: edam:format_1639
+ title: affymetrix
+ edam:format_1641:
+ text: edam:format_1641
+ description: Affymetrix data file format for information about experimental
+ conditions and protocols.
+ meaning: edam:format_1641
+ title: affymetrix-exp
+ edam:format_1644:
+ text: edam:format_1644
+ description: Format of Affymetrix data file of information about (normalised)
+ expression levels of the individual probes.
+ meaning: edam:format_1644
+ title: CHP
+ edam:format_1665:
+ text: edam:format_1665
+ description: Format of Taverna workflows.
+ meaning: edam:format_1665
+ title: Taverna workflow format
+ edam:format_1705:
+ text: edam:format_1705
+ description: The format of an entry from the HET group dictionary (HET groups
+ from PDB files).
+ meaning: edam:format_1705
+ title: HET group dictionary entry format
+ edam:format_1734:
+ text: edam:format_1734
+ description: Format of bibliographic reference as used by the PubMed database.
+ meaning: edam:format_1734
+ title: PubMed citation
+ edam:format_1735:
+ text: edam:format_1735
+ description: Format for abstracts of scientific articles from the Medline
+ database.
+ meaning: edam:format_1735
+ title: Medline Display Format
+ edam:format_1736:
+ text: edam:format_1736
+ description: CiteXplore 'core' citation format including title, journal, authors
+ and abstract.
+ meaning: edam:format_1736
+ title: CiteXplore-core
+ edam:format_1737:
+ text: edam:format_1737
+ description: CiteXplore 'all' citation format includes all known details such
+ as Mesh terms and cross-references.
+ meaning: edam:format_1737
+ title: CiteXplore-all
+ edam:format_1739:
+ text: edam:format_1739
+ description: Article format of the PubMed Central database.
+ meaning: edam:format_1739
+ title: pmc
+ edam:format_1740:
+ text: edam:format_1740
+ description: The format of iHOP (Information Hyperlinked over Proteins) text-mining
+ result.
+ meaning: edam:format_1740
+ title: iHOP format
+ edam:format_1741:
+ text: edam:format_1741
+ description: OSCAR format of annotated chemical text.
+ meaning: edam:format_1741
+ title: OSCAR format
+ edam:format_1861:
+ text: edam:format_1861
+ description: Map of a plasmid (circular DNA) in PlasMapper TextMap format.
+ meaning: edam:format_1861
+ title: PlasMapper TextMap
+ edam:format_1910:
+ text: edam:format_1910
+ description: Phylogenetic tree Newick (text) format.
+ meaning: edam:format_1910
+ title: newick
+ edam:format_1911:
+ text: edam:format_1911
+ description: Phylogenetic tree TreeCon (text) format.
+ meaning: edam:format_1911
+ title: TreeCon format
+ edam:format_1912:
+ text: edam:format_1912
+ description: Phylogenetic tree Nexus (text) format.
+ meaning: edam:format_1912
+ title: Nexus format
+ edam:format_1919:
+ text: edam:format_1919
+ description: Data format for a molecular sequence record.
+ meaning: edam:format_1919
+ title: Sequence record format
+ edam:format_1920:
+ text: edam:format_1920
+ description: Data format for molecular sequence feature information.
+ meaning: edam:format_1920
+ title: Sequence feature annotation format
+ edam:format_1921:
+ text: edam:format_1921
+ description: Data format for molecular sequence alignment information.
+ meaning: edam:format_1921
+ title: Alignment format
+ edam:format_1923:
+ text: edam:format_1923
+ description: ACEDB sequence format.
+ meaning: edam:format_1923
+ title: acedb
+ edam:format_1925:
+ text: edam:format_1925
+ description: Codata entry format.
+ meaning: edam:format_1925
+ title: codata
+ edam:format_1926:
+ text: edam:format_1926
+ description: Fasta format variant with database name before ID.
+ meaning: edam:format_1926
+ title: dbid
+ edam:format_1927:
+ text: edam:format_1927
+ description: EMBL entry format.
+ meaning: edam:format_1927
+ title: EMBL format
+ edam:format_1928:
+ text: edam:format_1928
+ description: Staden experiment file format.
+ meaning: edam:format_1928
+ title: Staden experiment format
+ edam:format_1929:
+ text: edam:format_1929
+ description: FASTA format including NCBI-style IDs.
+ meaning: edam:format_1929
+ title: FASTA
+ edam:format_1930:
+ text: edam:format_1930
+ description: FASTQ short read format ignoring quality scores.
+ meaning: edam:format_1930
+ title: FASTQ
+ edam:format_1931:
+ text: edam:format_1931
+ description: FASTQ Illumina 1.3 short read format.
+ meaning: edam:format_1931
+ title: FASTQ-illumina
+ edam:format_1932:
+ text: edam:format_1932
+ description: FASTQ short read format with phred quality.
+ meaning: edam:format_1932
+ title: FASTQ-sanger
+ edam:format_1933:
+ text: edam:format_1933
+ description: FASTQ Solexa/Illumina 1.0 short read format.
+ meaning: edam:format_1933
+ title: FASTQ-solexa
+ edam:format_1934:
+ text: edam:format_1934
+ description: Fitch program format.
+ meaning: edam:format_1934
+ title: fitch program
+ edam:format_1935:
+ text: edam:format_1935
+ description: GCG sequence file format.
+ meaning: edam:format_1935
+ title: GCG
+ edam:format_1936:
+ text: edam:format_1936
+ description: Genbank entry format.
+ meaning: edam:format_1936
+ title: GenBank format
+ edam:format_1937:
+ text: edam:format_1937
+ description: Genpept protein entry format.
+ meaning: edam:format_1937
+ title: genpept
+ edam:format_1938:
+ text: edam:format_1938
+ description: GFF feature file format with sequence in the header.
+ meaning: edam:format_1938
+ title: GFF2-seq
+ edam:format_1939:
+ text: edam:format_1939
+ description: GFF3 feature file format with sequence.
+ meaning: edam:format_1939
+ title: GFF3-seq
+ edam:format_1940:
+ text: edam:format_1940
+ description: FASTA sequence format including NCBI-style GIs.
+ meaning: edam:format_1940
+ title: giFASTA format
+ edam:format_1941:
+ text: edam:format_1941
+ description: Hennig86 output sequence format.
+ meaning: edam:format_1941
+ title: hennig86
+ edam:format_1942:
+ text: edam:format_1942
+ description: Intelligenetics sequence format.
+ meaning: edam:format_1942
+ title: ig
+ edam:format_1943:
+ text: edam:format_1943
+ description: Intelligenetics sequence format (strict version).
+ meaning: edam:format_1943
+ title: igstrict
+ edam:format_1944:
+ text: edam:format_1944
+ description: Jackknifer interleaved and non-interleaved sequence format.
+ meaning: edam:format_1944
+ title: jackknifer
+ edam:format_1945:
+ text: edam:format_1945
+ description: Mase program sequence format.
+ meaning: edam:format_1945
+ title: mase format
+ edam:format_1946:
+ text: edam:format_1946
+ description: Mega interleaved and non-interleaved sequence format.
+ meaning: edam:format_1946
+ title: mega-seq
+ edam:format_1947:
+ text: edam:format_1947
+ description: GCG MSF (multiple sequence file) file format.
+ meaning: edam:format_1947
+ title: GCG MSF
+ edam:format_1948:
+ text: edam:format_1948
+ description: NBRF/PIR entry sequence format.
+ meaning: edam:format_1948
+ title: nbrf/pir
+ edam:format_1949:
+ text: edam:format_1949
+ description: Nexus/paup interleaved sequence format.
+ meaning: edam:format_1949
+ title: nexus-seq
+ edam:format_1950:
+ text: edam:format_1950
+ description: PDB sequence format (ATOM lines).
+ meaning: edam:format_1950
+ title: pdbatom
+ edam:format_1951:
+ text: edam:format_1951
+ description: PDB nucleotide sequence format (ATOM lines).
+ meaning: edam:format_1951
+ title: pdbatomnuc
+ edam:format_1952:
+ text: edam:format_1952
+ description: PDB nucleotide sequence format (SEQRES lines).
+ meaning: edam:format_1952
+ title: pdbseqresnuc
+ edam:format_1953:
+ text: edam:format_1953
+ description: PDB sequence format (SEQRES lines).
+ meaning: edam:format_1953
+ title: pdbseqres
+ edam:format_1954:
+ text: edam:format_1954
+ description: Plain old FASTA sequence format (unspecified format for IDs).
+ meaning: edam:format_1954
+ title: Pearson format
+ edam:format_1957:
+ text: edam:format_1957
+ description: Raw sequence format with no non-sequence characters.
+ meaning: edam:format_1957
+ title: raw
+ edam:format_1958:
+ text: edam:format_1958
+ description: Refseq protein entry sequence format.
+ meaning: edam:format_1958
+ title: refseqp
+ edam:format_1960:
+ text: edam:format_1960
+ description: Staden suite sequence format.
+ meaning: edam:format_1960
+ title: Staden format
+ edam:format_1961:
+ text: edam:format_1961
+ description: Stockholm multiple sequence alignment format (used by Pfam and
+ Rfam).
+ meaning: edam:format_1961
+ title: Stockholm format
+ edam:format_1962:
+ text: edam:format_1962
+ description: DNA strider output sequence format.
+ meaning: edam:format_1962
+ title: strider format
+ edam:format_1963:
+ text: edam:format_1963
+ description: UniProtKB entry sequence format.
+ meaning: edam:format_1963
+ title: UniProtKB format
+ edam:format_1964:
+ text: edam:format_1964
+ description: Plain text sequence format (essentially unformatted).
+ meaning: edam:format_1964
+ title: plain text format (unformatted)
+ edam:format_1966:
+ text: edam:format_1966
+ description: NCBI ASN.1-based sequence format.
+ meaning: edam:format_1966
+ title: ASN.1 sequence format
+ edam:format_1967:
+ text: edam:format_1967
+ description: DAS sequence (XML) format (any type).
+ meaning: edam:format_1967
+ title: DAS format
+ edam:format_1968:
+ text: edam:format_1968
+ description: DAS sequence (XML) format (nucleotide-only).
+ meaning: edam:format_1968
+ title: dasdna
+ edam:format_1969:
+ text: edam:format_1969
+ description: EMBOSS debugging trace sequence format of full internal data
+ content.
+ meaning: edam:format_1969
+ title: debug-seq
+ edam:format_1970:
+ text: edam:format_1970
+ description: Jackknifer output sequence non-interleaved format.
+ meaning: edam:format_1970
+ title: jackknifernon
+ edam:format_1972:
+ text: edam:format_1972
+ description: NCBI FASTA sequence format with NCBI-style IDs.
+ meaning: edam:format_1972
+ title: NCBI format
+ edam:format_1973:
+ text: edam:format_1973
+ description: Nexus/paup non-interleaved sequence format.
+ meaning: edam:format_1973
+ title: nexusnon
+ edam:format_1974:
+ text: edam:format_1974
+ description: General Feature Format (GFF) of sequence features.
+ meaning: edam:format_1974
+ title: GFF2
+ edam:format_1975:
+ text: edam:format_1975
+ description: Generic Feature Format version 3 (GFF3) of sequence features.
+ meaning: edam:format_1975
+ title: GFF3
+ edam:format_1978:
+ text: edam:format_1978
+ description: DAS GFF (XML) feature format.
+ meaning: edam:format_1978
+ title: DASGFF
+ edam:format_1979:
+ text: edam:format_1979
+ description: EMBOSS debugging trace feature format of full internal data content.
+ meaning: edam:format_1979
+ title: debug-feat
+ edam:format_1982:
+ text: edam:format_1982
+ description: ClustalW format for (aligned) sequences.
+ meaning: edam:format_1982
+ title: ClustalW format
+ edam:format_1983:
+ text: edam:format_1983
+ description: EMBOSS alignment format for debugging trace of full internal
+ data content.
+ meaning: edam:format_1983
+ title: debug
+ edam:format_1984:
+ text: edam:format_1984
+ description: Fasta format for (aligned) sequences.
+ meaning: edam:format_1984
+ title: FASTA-aln
+ edam:format_1985:
+ text: edam:format_1985
+ description: Pearson MARKX0 alignment format.
+ meaning: edam:format_1985
+ title: markx0
+ edam:format_1986:
+ text: edam:format_1986
+ description: Pearson MARKX1 alignment format.
+ meaning: edam:format_1986
+ title: markx1
+ edam:format_1987:
+ text: edam:format_1987
+ description: Pearson MARKX10 alignment format.
+ meaning: edam:format_1987
+ title: markx10
+ edam:format_1988:
+ text: edam:format_1988
+ description: Pearson MARKX2 alignment format.
+ meaning: edam:format_1988
+ title: markx2
+ edam:format_1989:
+ text: edam:format_1989
+ description: Pearson MARKX3 alignment format.
+ meaning: edam:format_1989
+ title: markx3
+ edam:format_1990:
+ text: edam:format_1990
+ description: Alignment format for start and end of matches between sequence
+ pairs.
+ meaning: edam:format_1990
+ title: match
+ edam:format_1991:
+ text: edam:format_1991
+ description: Mega format for (typically aligned) sequences.
+ meaning: edam:format_1991
+ title: mega
+ edam:format_1992:
+ text: edam:format_1992
+ description: Mega non-interleaved format for (typically aligned) sequences.
+ meaning: edam:format_1992
+ title: meganon
+ edam:format_1996:
+ text: edam:format_1996
+ description: EMBOSS simple sequence pairwise alignment format.
+ meaning: edam:format_1996
+ title: pair
+ edam:format_1997:
+ text: edam:format_1997
+ description: Phylip format for (aligned) sequences.
+ meaning: edam:format_1997
+ title: PHYLIP format
+ edam:format_1998:
+ text: edam:format_1998
+ description: Phylip non-interleaved format for (aligned) sequences.
+ meaning: edam:format_1998
+ title: PHYLIP sequential
+ edam:format_1999:
+ text: edam:format_1999
+ description: Alignment format for score values for pairs of sequences.
+ meaning: edam:format_1999
+ title: scores format
+ edam:format_2000:
+ text: edam:format_2000
+ description: SELEX format for (aligned) sequences.
+ meaning: edam:format_2000
+ title: selex
+ edam:format_2001:
+ text: edam:format_2001
+ description: EMBOSS simple multiple alignment format.
+ meaning: edam:format_2001
+ title: EMBOSS simple format
+ edam:format_2002:
+ text: edam:format_2002
+ description: Simple multiple sequence (alignment) format for SRS.
+ meaning: edam:format_2002
+ title: srs format
+ edam:format_2003:
+ text: edam:format_2003
+ description: Simple sequence pair (alignment) format for SRS.
+ meaning: edam:format_2003
+ title: srspair
+ edam:format_2004:
+ text: edam:format_2004
+ description: T-Coffee program alignment format.
+ meaning: edam:format_2004
+ title: T-Coffee format
+ edam:format_2005:
+ text: edam:format_2005
+ description: Treecon format for (aligned) sequences.
+ meaning: edam:format_2005
+ title: TreeCon-seq
+ edam:format_2006:
+ text: edam:format_2006
+ description: Data format for a phylogenetic tree.
+ meaning: edam:format_2006
+ title: Phylogenetic tree format
+ edam:format_2013:
+ text: edam:format_2013
+ description: Data format for a biological pathway or network.
+ meaning: edam:format_2013
+ title: Biological pathway or network format
+ edam:format_2014:
+ text: edam:format_2014
+ description: Data format for a sequence-profile alignment.
+ meaning: edam:format_2014
+ title: Sequence-profile alignment format
+ edam:format_2017:
+ text: edam:format_2017
+ description: Data format for an amino acid index.
+ meaning: edam:format_2017
+ title: Amino acid index format
+ edam:format_2020:
+ text: edam:format_2020
+ description: Data format for a full-text scientific article.
+ meaning: edam:format_2020
+ title: Article format
+ edam:format_2021:
+ text: edam:format_2021
+ description: Data format of a report from text mining.
+ meaning: edam:format_2021
+ title: Text mining report format
+ edam:format_2027:
+ text: edam:format_2027
+ description: Data format for reports on enzyme kinetics.
+ meaning: edam:format_2027
+ title: Enzyme kinetics report format
+ edam:format_2030:
+ text: edam:format_2030
+ description: Format of a report on a chemical compound.
+ meaning: edam:format_2030
+ title: Chemical data format
+ edam:format_2031:
+ text: edam:format_2031
+ description: Format of a report on a particular locus, gene, gene system or
+ groups of genes.
+ meaning: edam:format_2031
+ title: Gene annotation format
+ edam:format_2032:
+ text: edam:format_2032
+ description: Format of a workflow.
+ meaning: edam:format_2032
+ title: Workflow format
+ edam:format_2033:
+ text: edam:format_2033
+ description: Data format for a molecular tertiary structure.
+ meaning: edam:format_2033
+ title: Tertiary structure format
+ edam:format_2035:
+ text: edam:format_2035
+ description: Text format of a chemical formula.
+ meaning: edam:format_2035
+ title: Chemical formula format
+ edam:format_2036:
+ text: edam:format_2036
+ description: Format of raw (unplotted) phylogenetic data.
+ meaning: edam:format_2036
+ title: Phylogenetic character data format
+ edam:format_2037:
+ text: edam:format_2037
+ description: Format of phylogenetic continuous quantitative character data.
+ meaning: edam:format_2037
+ title: Phylogenetic continuous quantitative character format
+ edam:format_2038:
+ text: edam:format_2038
+ description: Format of phylogenetic discrete states data.
+ meaning: edam:format_2038
+ title: Phylogenetic discrete states format
+ edam:format_2039:
+ text: edam:format_2039
+ description: Format of phylogenetic cliques data.
+ meaning: edam:format_2039
+ title: Phylogenetic tree report (cliques) format
+ edam:format_2040:
+ text: edam:format_2040
+ description: Format of phylogenetic invariants data.
+ meaning: edam:format_2040
+ title: Phylogenetic tree report (invariants) format
+ edam:format_2049:
+ text: edam:format_2049
+ description: Format for phylogenetic tree distance data.
+ meaning: edam:format_2049
+ title: Phylogenetic tree report (tree distances) format
+ edam:format_2052:
+ text: edam:format_2052
+ description: Format for reports on a protein family.
+ meaning: edam:format_2052
+ title: Protein family report format
+ edam:format_2054:
+ text: edam:format_2054
+ description: Format for molecular interaction data.
+ meaning: edam:format_2054
+ title: Protein interaction format
+ edam:format_2055:
+ text: edam:format_2055
+ description: Format for sequence assembly data.
+ meaning: edam:format_2055
+ title: Sequence assembly format
+ edam:format_2056:
+ text: edam:format_2056
+ description: Format for information about a microarray experimental per se
+ (not the data generated from that experiment).
+ meaning: edam:format_2056
+ title: Microarray experiment data format
+ edam:format_2057:
+ text: edam:format_2057
+ description: Format for sequence trace data (i.e. including base call information).
+ meaning: edam:format_2057
+ title: Sequence trace format
+ edam:format_2058:
+ text: edam:format_2058
+ description: Format of a file of gene expression data, e.g. a gene expression
+ matrix or profile.
+ meaning: edam:format_2058
+ title: Gene expression report format
+ edam:format_2060:
+ text: edam:format_2060
+ description: Format of a map of (typically one) molecular sequence annotated
+ with features.
+ meaning: edam:format_2060
+ title: Map format
+ edam:format_2061:
+ text: edam:format_2061
+ description: Format of a report on PCR primers or hybridisation oligos in
+ a nucleic acid sequence.
+ meaning: edam:format_2061
+ title: Nucleic acid features (primers) format
+ edam:format_2062:
+ text: edam:format_2062
+ description: Format of a report of general information about a specific protein.
+ meaning: edam:format_2062
+ title: Protein report format
+ edam:format_2064:
+ text: edam:format_2064
+ description: Format of a matrix of 3D-1D scores (amino acid environment probabilities).
+ meaning: edam:format_2064
+ title: 3D-1D scoring matrix format
+ edam:format_2065:
+ text: edam:format_2065
+ description: Format of a report on the quality of a protein three-dimensional
+ model.
+ meaning: edam:format_2065
+ title: Protein structure report (quality evaluation) format
+ edam:format_2066:
+ text: edam:format_2066
+ description: Format of a report on sequence hits and associated data from
+ searching a sequence database.
+ meaning: edam:format_2066
+ title: Database hits (sequence) format
+ edam:format_2067:
+ text: edam:format_2067
+ description: Format of a matrix of genetic distances between molecular sequences.
+ meaning: edam:format_2067
+ title: Sequence distance matrix format
+ edam:format_2068:
+ text: edam:format_2068
+ description: Format of a sequence motif.
+ meaning: edam:format_2068
+ title: Sequence motif format
+ edam:format_2069:
+ text: edam:format_2069
+ description: Format of a sequence profile.
+ meaning: edam:format_2069
+ title: Sequence profile format
+ edam:format_2072:
+ text: edam:format_2072
+ description: Format of a hidden Markov model.
+ meaning: edam:format_2072
+ title: Hidden Markov model format
+ edam:format_2074:
+ text: edam:format_2074
+ description: Data format of a dirichlet distribution.
+ meaning: edam:format_2074
+ title: Dirichlet distribution format
+ edam:format_2075:
+ text: edam:format_2075
+ description: Data format for the emission and transition counts of a hidden
+ Markov model.
+ meaning: edam:format_2075
+ title: HMM emission and transition counts format
+ edam:format_2076:
+ text: edam:format_2076
+ description: Format for secondary structure (predicted or real) of an RNA
+ molecule.
+ meaning: edam:format_2076
+ title: RNA secondary structure format
+ edam:format_2077:
+ text: edam:format_2077
+ description: Format for secondary structure (predicted or real) of a protein
+ molecule.
+ meaning: edam:format_2077
+ title: Protein secondary structure format
+ edam:format_2078:
+ text: edam:format_2078
+ description: Format used to specify range(s) of sequence positions.
+ meaning: edam:format_2078
+ title: Sequence range format
+ edam:format_2094:
+ text: edam:format_2094
+ description: Alphabet for molecular sequence with possible unknown positions
+ but without non-sequence characters.
+ meaning: edam:format_2094
+ title: pure
+ edam:format_2095:
+ text: edam:format_2095
+ description: Alphabet for a molecular sequence with possible unknown positions
+ but possibly with non-sequence characters.
+ meaning: edam:format_2095
+ title: unpure
+ edam:format_2096:
+ text: edam:format_2096
+ description: Alphabet for a molecular sequence with possible unknown positions
+ but without ambiguity characters.
+ meaning: edam:format_2096
+ title: unambiguous sequence
+ edam:format_2097:
+ text: edam:format_2097
+ description: Alphabet for a molecular sequence with possible unknown positions
+ and possible ambiguity characters.
+ meaning: edam:format_2097
+ title: ambiguous
+ edam:format_2155:
+ text: edam:format_2155
+ description: Format used for map of repeats in molecular (typically nucleotide)
+ sequences.
+ meaning: edam:format_2155
+ title: Sequence features (repeats) format
+ edam:format_2158:
+ text: edam:format_2158
+ description: Format used for report on restriction enzyme recognition sites
+ in nucleotide sequences.
+ meaning: edam:format_2158
+ title: Nucleic acid features (restriction sites) format
+ edam:format_2170:
+ text: edam:format_2170
+ description: Format used for clusters of molecular sequences.
+ meaning: edam:format_2170
+ title: Sequence cluster format
+ edam:format_2171:
+ text: edam:format_2171
+ description: Format used for clusters of protein sequences.
+ meaning: edam:format_2171
+ title: Sequence cluster format (protein)
+ edam:format_2172:
+ text: edam:format_2172
+ description: Format used for clusters of nucleotide sequences.
+ meaning: edam:format_2172
+ title: Sequence cluster format (nucleic acid)
+ edam:format_2181:
+ text: edam:format_2181
+ description: A text format resembling EMBL entry format.
+ meaning: edam:format_2181
+ title: EMBL-like (text)
+ edam:format_2182:
+ text: edam:format_2182
+ description: A text format resembling FASTQ short read format.
+ meaning: edam:format_2182
+ title: FASTQ-like format (text)
+ edam:format_2183:
+ text: edam:format_2183
+ description: XML format for EMBL entries.
+ meaning: edam:format_2183
+ title: EMBLXML
+ edam:format_2184:
+ text: edam:format_2184
+ description: Specific XML format for EMBL entries (only uses certain sections).
+ meaning: edam:format_2184
+ title: cdsxml
+ edam:format_2185:
+ text: edam:format_2185
+ description: INSDSeq provides the elements of a sequence as presented in the
+ GenBank/EMBL/DDBJ-style flatfile formats, with a small amount of additional
+ structure.
+ meaning: edam:format_2185
+ title: INSDSeq
+ edam:format_2186:
+ text: edam:format_2186
+ description: Geneseq sequence format.
+ meaning: edam:format_2186
+ title: geneseq
+ edam:format_2187:
+ text: edam:format_2187
+ description: A text sequence format resembling uniprotkb entry format.
+ meaning: edam:format_2187
+ title: UniProt-like (text)
+ edam:format_2194:
+ text: edam:format_2194
+ description: Abstract format used by MedLine database.
+ meaning: edam:format_2194
+ title: medline
+ edam:format_2195:
+ text: edam:format_2195
+ description: Format used for ontologies.
+ meaning: edam:format_2195
+ title: Ontology format
+ edam:format_2196:
+ text: edam:format_2196
+ description: A serialisation format conforming to the Open Biomedical Ontologies
+ (OBO) model.
+ meaning: edam:format_2196
+ title: OBO format
+ edam:format_2197:
+ text: edam:format_2197
+ description: A serialisation format conforming to the Web Ontology Language
+ (OWL) model.
+ meaning: edam:format_2197
+ title: OWL format
+ edam:format_2200:
+ text: edam:format_2200
+ description: A text format resembling FASTA format.
+ meaning: edam:format_2200
+ title: FASTA-like (text)
+ edam:format_2204:
+ text: edam:format_2204
+ description: An XML format for EMBL entries.
+ meaning: edam:format_2204
+ title: EMBL format (XML)
+ edam:format_2205:
+ text: edam:format_2205
+ description: A text format resembling GenBank entry (plain text) format.
+ meaning: edam:format_2205
+ title: GenBank-like format (text)
+ edam:format_2206:
+ text: edam:format_2206
+ description: Text format for a sequence feature table.
+ meaning: edam:format_2206
+ title: Sequence feature table format (text)
+ edam:format_2304:
+ text: edam:format_2304
+ description: Entry format (XML) for the STRING database of protein interaction.
+ meaning: edam:format_2304
+ title: STRING entry format (XML)
+ edam:format_2305:
+ text: edam:format_2305
+ description: GFF feature format (of indeterminate version).
+ meaning: edam:format_2305
+ title: GFF
+ edam:format_2306:
+ text: edam:format_2306
+ description: Gene Transfer Format (GTF), a restricted version of GFF.
+ meaning: edam:format_2306
+ title: GTF
+ edam:format_2310:
+ text: edam:format_2310
+ description: FASTA format wrapped in HTML elements.
+ meaning: edam:format_2310
+ title: FASTA-HTML
+ edam:format_2311:
+ text: edam:format_2311
+ description: EMBL entry format wrapped in HTML elements.
+ meaning: edam:format_2311
+ title: EMBL-HTML
+ edam:format_2330:
+ text: edam:format_2330
+ description: Textual format.
+ meaning: edam:format_2330
+ title: Textual format
+ edam:format_2331:
+ text: edam:format_2331
+ description: HTML format.
+ meaning: edam:format_2331
+ title: HTML
+ edam:format_2332:
+ text: edam:format_2332
+ description: eXtensible Markup Language (XML) format.
+ meaning: edam:format_2332
+ title: XML
+ edam:format_2333:
+ text: edam:format_2333
+ description: Binary format.
+ meaning: edam:format_2333
+ title: Binary format
+ edam:format_2350:
+ text: edam:format_2350
+ description: A placeholder concept for visual navigation by dividing data
+ formats by the content of the data that is represented.
+ meaning: edam:format_2350
+ title: Format (by type of data)
+ edam:format_2352:
+ text: edam:format_2352
+ description: BioXSD-schema-based XML format of sequence-based data and some
+ other common data - sequence records, alignments, feature records, references
+ to resources, and more - optimised for integrative bioinformatics, Web services,
+ and object-oriented programming.
+ meaning: edam:format_2352
+ title: BioXSD (XML)
+ edam:format_2376:
+ text: edam:format_2376
+ description: A serialisation format conforming to the Resource Description
+ Framework (RDF) model.
+ meaning: edam:format_2376
+ title: RDF format
+ edam:format_2532:
+ text: edam:format_2532
+ description: Genbank entry format wrapped in HTML elements.
+ meaning: edam:format_2532
+ title: GenBank-HTML
+ edam:format_2543:
+ text: edam:format_2543
+ description: A format resembling EMBL entry (plain text) format.
+ meaning: edam:format_2543
+ title: EMBL-like format
+ edam:format_2545:
+ text: edam:format_2545
+ description: A format resembling FASTQ short read format.
+ meaning: edam:format_2545
+ title: FASTQ-like format
+ edam:format_2546:
+ text: edam:format_2546
+ description: A format resembling FASTA format.
+ meaning: edam:format_2546
+ title: FASTA-like
+ edam:format_2547:
+ text: edam:format_2547
+ description: A sequence format resembling uniprotkb entry format.
+ meaning: edam:format_2547
+ title: uniprotkb-like format
+ edam:format_2548:
+ text: edam:format_2548
+ description: Format for a sequence feature table.
+ meaning: edam:format_2548
+ title: Sequence feature table format
+ edam:format_2549:
+ text: edam:format_2549
+ description: OBO ontology text format.
+ meaning: edam:format_2549
+ title: OBO
+ edam:format_2550:
+ text: edam:format_2550
+ description: OBO ontology XML format.
+ meaning: edam:format_2550
+ title: OBO-XML
+ edam:format_2551:
+ text: edam:format_2551
+ description: Data format for a molecular sequence record (text).
+ meaning: edam:format_2551
+ title: Sequence record format (text)
+ edam:format_2552:
+ text: edam:format_2552
+ description: Data format for a molecular sequence record (XML).
+ meaning: edam:format_2552
+ title: Sequence record format (XML)
+ edam:format_2553:
+ text: edam:format_2553
+ description: XML format for a sequence feature table.
+ meaning: edam:format_2553
+ title: Sequence feature table format (XML)
+ edam:format_2554:
+ text: edam:format_2554
+ description: Text format for molecular sequence alignment information.
+ meaning: edam:format_2554
+ title: Alignment format (text)
+ edam:format_2555:
+ text: edam:format_2555
+ description: XML format for molecular sequence alignment information.
+ meaning: edam:format_2555
+ title: Alignment format (XML)
+ edam:format_2556:
+ text: edam:format_2556
+ description: Text format for a phylogenetic tree.
+ meaning: edam:format_2556
+ title: Phylogenetic tree format (text)
+ edam:format_2557:
+ text: edam:format_2557
+ description: XML format for a phylogenetic tree.
+ meaning: edam:format_2557
+ title: Phylogenetic tree format (XML)
+ edam:format_2558:
+ text: edam:format_2558
+ description: An XML format resembling EMBL entry format.
+ meaning: edam:format_2558
+ title: EMBL-like (XML)
+ edam:format_2559:
+ text: edam:format_2559
+ description: A format resembling GenBank entry (plain text) format.
+ meaning: edam:format_2559
+ title: GenBank-like format
+ edam:format_2561:
+ text: edam:format_2561
+ description: Text format for sequence assembly data.
+ meaning: edam:format_2561
+ title: Sequence assembly format (text)
+ edam:format_2566:
+ text: edam:format_2566
+ description: Alphabet for a molecular sequence without any unknown positions
+ or ambiguity characters.
+ meaning: edam:format_2566
+ title: completely unambiguous
+ edam:format_2567:
+ text: edam:format_2567
+ description: Alphabet for a molecular sequence without unknown positions,
+ ambiguity or non-sequence characters.
+ meaning: edam:format_2567
+ title: completely unambiguous pure
+ edam:format_2568:
+ text: edam:format_2568
+ description: Alphabet for a nucleotide sequence (characters ACGTU only) without
+ unknown positions, ambiguity or non-sequence characters .
+ meaning: edam:format_2568
+ title: completely unambiguous pure nucleotide
+ edam:format_2569:
+ text: edam:format_2569
+ description: Alphabet for a DNA sequence (characters ACGT only) without unknown
+ positions, ambiguity or non-sequence characters.
+ meaning: edam:format_2569
+ title: completely unambiguous pure dna
+ edam:format_2570:
+ text: edam:format_2570
+ description: Alphabet for an RNA sequence (characters ACGU only) without unknown
+ positions, ambiguity or non-sequence characters.
+ meaning: edam:format_2570
+ title: completely unambiguous pure rna sequence
+ edam:format_2571:
+ text: edam:format_2571
+ description: Format of a raw molecular sequence (i.e. the alphabet used).
+ meaning: edam:format_2571
+ title: Raw sequence format
+ edam:format_2572:
+ text: edam:format_2572
+ description: BAM format, the binary, BGZF-formatted compressed version of
+ SAM format for alignment of nucleotide sequences (e.g. sequencing reads)
+ to (a) reference sequence(s). May contain base-call and alignment qualities
+ and other data.
+ meaning: edam:format_2572
+ title: BAM
+ edam:format_2573:
+ text: edam:format_2573
+ description: Sequence Alignment/Map (SAM) format for alignment of nucleotide
+ sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain
+ base-call and alignment qualities and other data.
+ meaning: edam:format_2573
+ title: SAM
+ edam:format_2585:
+ text: edam:format_2585
+ description: Systems Biology Markup Language (SBML), the standard XML format
+ for models of biological processes such as for example metabolism, cell
+ signaling, and gene regulation.
+ meaning: edam:format_2585
+ title: SBML
+ edam:format_2607:
+ text: edam:format_2607
+ description: Alphabet for any protein sequence without unknown positions,
+ ambiguity or non-sequence characters.
+ meaning: edam:format_2607
+ title: completely unambiguous pure protein
+ edam:format_2848:
+ text: edam:format_2848
+ description: Format of a bibliographic reference.
+ meaning: edam:format_2848
+ title: Bibliographic reference format
+ edam:format_2919:
+ text: edam:format_2919
+ description: Format of a sequence annotation track.
+ meaning: edam:format_2919
+ title: Sequence annotation track format
+ edam:format_2920:
+ text: edam:format_2920
+ description: Data format for molecular sequence alignment information that
+ can hold sequence alignment(s) of only 2 sequences.
+ meaning: edam:format_2920
+ title: Alignment format (pair only)
+ edam:format_2921:
+ text: edam:format_2921
+ description: Format of sequence variation annotation.
+ meaning: edam:format_2921
+ title: Sequence variation annotation format
+ edam:format_2922:
+ text: edam:format_2922
+ description: Some variant of Pearson MARKX alignment format.
+ meaning: edam:format_2922
+ title: markx0 variant
+ edam:format_2923:
+ text: edam:format_2923
+ description: Some variant of Mega format for (typically aligned) sequences.
+ meaning: edam:format_2923
+ title: mega variant
+ edam:format_2924:
+ text: edam:format_2924
+ description: Some variant of Phylip format for (aligned) sequences.
+ meaning: edam:format_2924
+ title: Phylip format variant
+ edam:format_3000:
+ text: edam:format_3000
+ description: AB1 binary format of raw DNA sequence reads (output of Applied
+ Biosystems' sequencing analysis software). Contains an electropherogram
+ and the DNA base sequence.
+ meaning: edam:format_3000
+ title: AB1
+ edam:format_3001:
+ text: edam:format_3001
+ description: ACE sequence assembly format including contigs, base-call qualities,
+ and other metadata (version Aug 1998 and onwards).
+ meaning: edam:format_3001
+ title: ACE
+ edam:format_3003:
+ text: edam:format_3003
+ description: Browser Extensible Data (BED) format of sequence annotation track,
+ typically to be displayed in a genome browser.
+ meaning: edam:format_3003
+ title: BED
+ edam:format_3004:
+ text: edam:format_3004
+ description: bigBed format for large sequence annotation tracks, similar to
+ textual BED format.
+ meaning: edam:format_3004
+ title: bigBed
+ edam:format_3005:
+ text: edam:format_3005
+ description: Wiggle format (WIG) of a sequence annotation track that consists
+ of a value for each sequence position. Typically to be displayed in a genome
+ browser.
+ meaning: edam:format_3005
+ title: WIG
+ edam:format_3006:
+ text: edam:format_3006
+ description: bigWig format for large sequence annotation tracks that consist
+ of a value for each sequence position. Similar to textual WIG format.
+ meaning: edam:format_3006
+ title: bigWig
+ edam:format_3007:
+ text: edam:format_3007
+ description: PSL format of alignments, typically generated by BLAT or psLayout.
+ Can be displayed in a genome browser like a sequence annotation track.
+ meaning: edam:format_3007
+ title: PSL
+ edam:format_3008:
+ text: edam:format_3008
+ description: Multiple Alignment Format (MAF) supporting alignments of whole
+ genomes with rearrangements, directions, multiple pieces to the alignment,
+ and so forth.
+ meaning: edam:format_3008
+ title: MAF
+ edam:format_3009:
+ text: edam:format_3009
+ description: 2bit binary format of nucleotide sequences using 2 bits per nucleotide.
+ In addition encodes unknown nucleotides and lower-case 'masking'.
+ meaning: edam:format_3009
+ title: 2bit
+ edam:format_3010:
+ text: edam:format_3010
+ description: .nib (nibble) binary format of a nucleotide sequence using 4
+ bits per nucleotide (including unknown) and its lower-case 'masking'.
+ meaning: edam:format_3010
+ title: .nib
+ edam:format_3011:
+ text: edam:format_3011
+ description: genePred table format for gene prediction tracks.
+ meaning: edam:format_3011
+ title: genePred
+ edam:format_3012:
+ text: edam:format_3012
+ description: Personal Genome SNP (pgSnp) format for sequence variation tracks
+ (indels and polymorphisms), supported by the UCSC Genome Browser.
+ meaning: edam:format_3012
+ title: pgSnp
+ edam:format_3013:
+ text: edam:format_3013
+ description: axt format of alignments, typically produced from BLASTZ.
+ meaning: edam:format_3013
+ title: axt
+ edam:format_3014:
+ text: edam:format_3014
+ description: LAV format of alignments generated by BLASTZ and LASTZ.
+ meaning: edam:format_3014
+ title: LAV
+ edam:format_3015:
+ text: edam:format_3015
+ description: Pileup format of alignment of sequences (e.g. sequencing reads)
+ to (a) reference sequence(s). Contains aligned bases per base of the reference
+ sequence(s).
+ meaning: edam:format_3015
+ title: Pileup
+ edam:format_3016:
+ text: edam:format_3016
+ description: Variant Call Format (VCF) is tabular format for storing genomic
+ sequence variations.
+ meaning: edam:format_3016
+ title: VCF
+ edam:format_3017:
+ text: edam:format_3017
+ description: Sequence Read Format (SRF) of sequence trace data. Supports submission
+ to the NCBI Short Read Archive.
+ meaning: edam:format_3017
+ title: SRF
+ edam:format_3018:
+ text: edam:format_3018
+ description: ZTR format for storing chromatogram data from DNA sequencing
+ instruments.
+ meaning: edam:format_3018
+ title: ZTR
+ edam:format_3019:
+ text: edam:format_3019
+ description: Genome Variation Format (GVF). A GFF3-compatible format with
+ defined header and attribute tags for sequence variation.
+ meaning: edam:format_3019
+ title: GVF
+ edam:format_3020:
+ text: edam:format_3020
+ description: BCF is the binary version of Variant Call Format (VCF) for sequence
+ variation (indels, polymorphisms, structural variation).
+ meaning: edam:format_3020
+ title: BCF
+ edam:format_3033:
+ text: edam:format_3033
+ description: Format of a matrix (array) of numerical values.
+ meaning: edam:format_3033
+ title: Matrix format
+ edam:format_3097:
+ text: edam:format_3097
+ description: Format of data concerning the classification of the sequences
+ and/or structures of protein structural domain(s).
+ meaning: edam:format_3097
+ title: Protein domain classification format
+ edam:format_3098:
+ text: edam:format_3098
+ description: Format of raw SCOP domain classification data files.
+ meaning: edam:format_3098
+ title: Raw SCOP domain classification format
+ edam:format_3099:
+ text: edam:format_3099
+ description: Format of raw CATH domain classification data files.
+ meaning: edam:format_3099
+ title: Raw CATH domain classification format
+ edam:format_3100:
+ text: edam:format_3100
+ description: Format of summary of domain classification information for a
+ CATH domain.
+ meaning: edam:format_3100
+ title: CATH domain report format
+ edam:format_3155:
+ text: edam:format_3155
+ description: Systems Biology Result Markup Language (SBRML), the standard
+ XML format for simulated or calculated results (e.g. trajectories) of systems
+ biology models.
+ meaning: edam:format_3155
+ title: SBRML
+ edam:format_3156:
+ text: edam:format_3156
+ description: BioPAX is an exchange format for pathway data, with its data
+ model defined in OWL.
+ meaning: edam:format_3156
+ title: BioPAX
+ edam:format_3157:
+ text: edam:format_3157
+ description: EBI Application Result XML is a format returned by sequence similarity
+ search Web services at EBI.
+ meaning: edam:format_3157
+ title: EBI Application Result XML
+ edam:format_3158:
+ text: edam:format_3158
+ description: XML Molecular Interaction Format (MIF), standardised by HUPO
+ PSI MI.
+ meaning: edam:format_3158
+ title: PSI MI XML (MIF)
+ edam:format_3159:
+ text: edam:format_3159
+ description: phyloXML is a standardised XML format for phylogenetic trees,
+ networks, and associated data.
+ meaning: edam:format_3159
+ title: phyloXML
+ edam:format_3160:
+ text: edam:format_3160
+ description: NeXML is a standardised XML format for rich phyloinformatic data.
+ meaning: edam:format_3160
+ title: NeXML
+ edam:format_3161:
+ text: edam:format_3161
+ description: MAGE-ML XML format for microarray expression data, standardised
+ by MGED (now FGED).
+ meaning: edam:format_3161
+ title: MAGE-ML
+ edam:format_3162:
+ text: edam:format_3162
+ description: MAGE-TAB textual format for microarray expression data, standardised
+ by MGED (now FGED).
+ meaning: edam:format_3162
+ title: MAGE-TAB
+ edam:format_3163:
+ text: edam:format_3163
+ description: GCDML XML format for genome and metagenome metadata according
+ to MIGS/MIMS/MIMARKS information standards, standardised by the Genomic
+ Standards Consortium (GSC).
+ meaning: edam:format_3163
+ title: GCDML
+ edam:format_3164:
+ text: edam:format_3164
+ description: GTrack is a generic and optimised tabular format for genome or
+ sequence feature tracks. GTrack unifies the power of other track formats
+ (e.g. GFF3, BED, WIG), and while optimised in size, adds more flexibility,
+ customisation, and automation ("machine understandability").
+ meaning: edam:format_3164
+ title: GTrack
+ edam:format_3166:
+ text: edam:format_3166
+ description: Data format for a report of information derived from a biological
+ pathway or network.
+ meaning: edam:format_3166
+ title: Biological pathway or network report format
+ edam:format_3167:
+ text: edam:format_3167
+ description: Data format for annotation on a laboratory experiment.
+ meaning: edam:format_3167
+ title: Experiment annotation format
+ edam:format_3235:
+ text: edam:format_3235
+ description: Cytoband format for chromosome cytobands.
+ meaning: edam:format_3235
+ title: Cytoband format
+ edam:format_3239:
+ text: edam:format_3239
+ description: CopasiML, the native format of COPASI.
+ meaning: edam:format_3239
+ title: CopasiML
+ edam:format_3240:
+ text: edam:format_3240
+ description: CellML, the format for mathematical models of biological and
+ other networks.
+ meaning: edam:format_3240
+ title: CellML
+ edam:format_3242:
+ text: edam:format_3242
+ description: Tabular Molecular Interaction format (MITAB), standardised by
+ HUPO PSI MI.
+ meaning: edam:format_3242
+ title: PSI MI TAB (MITAB)
+ edam:format_3243:
+ text: edam:format_3243
+ description: Protein affinity format (PSI-PAR), standardised by HUPO PSI MI.
+ It is compatible with PSI MI XML (MIF) and uses the same XML Schema.
+ meaning: edam:format_3243
+ title: PSI-PAR
+ edam:format_3244:
+ text: edam:format_3244
+ description: mzML format for raw spectrometer output data, standardised by
+ HUPO PSI MSS.
+ meaning: edam:format_3244
+ title: mzML
+ edam:format_3245:
+ text: edam:format_3245
+ description: Format for mass pectra and derived data, include peptide sequences
+ etc.
+ meaning: edam:format_3245
+ title: Mass spectrometry data format
+ edam:format_3246:
+ text: edam:format_3246
+ description: TraML (Transition Markup Language) is the format for mass spectrometry
+ transitions, standardised by HUPO PSI MSS.
+ meaning: edam:format_3246
+ title: TraML
+ edam:format_3247:
+ text: edam:format_3247
+ description: mzIdentML is the exchange format for peptides and proteins identified
+ from mass spectra, standardised by HUPO PSI PI. It can be used for outputs
+ of proteomics search engines.
+ meaning: edam:format_3247
+ title: mzIdentML
+ edam:format_3248:
+ text: edam:format_3248
+ description: mzQuantML is the format for quantitation values associated with
+ peptides, proteins and small molecules from mass spectra, standardised by
+ HUPO PSI PI. It can be used for outputs of quantitation software for proteomics.
+ meaning: edam:format_3248
+ title: mzQuantML
+ edam:format_3249:
+ text: edam:format_3249
+ description: GelML is the format for describing the process of gel electrophoresis,
+ standardised by HUPO PSI PS.
+ meaning: edam:format_3249
+ title: GelML
+ edam:format_3250:
+ text: edam:format_3250
+ description: spML is the format for describing proteomics sample processing,
+ other than using gels, prior to mass spectrometric protein identification,
+ standardised by HUPO PSI PS. It may also be applicable for metabolomics.
+ meaning: edam:format_3250
+ title: spML
+ edam:format_3252:
+ text: edam:format_3252
+ description: A human-readable encoding for the Web Ontology Language (OWL).
+ meaning: edam:format_3252
+ title: OWL Functional Syntax
+ edam:format_3253:
+ text: edam:format_3253
+ description: A syntax for writing OWL class expressions.
+ meaning: edam:format_3253
+ title: Manchester OWL Syntax
+ edam:format_3254:
+ text: edam:format_3254
+ description: A superset of the "Description-Logic Knowledge Representation
+ System Specification from the KRSS Group of the ARPA Knowledge Sharing Effort".
+ meaning: edam:format_3254
+ title: KRSS2 Syntax
+ edam:format_3255:
+ text: edam:format_3255
+ description: The Terse RDF Triple Language (Turtle) is a human-friendly serialisation
+ format for RDF (Resource Description Framework) graphs.
+ meaning: edam:format_3255
+ title: Turtle
+ edam:format_3256:
+ text: edam:format_3256
+ description: A plain text serialisation format for RDF (Resource Description
+ Framework) graphs, and a subset of the Turtle (Terse RDF Triple Language)
+ format.
+ meaning: edam:format_3256
+ title: N-Triples
+ edam:format_3257:
+ text: edam:format_3257
+ description: A shorthand non-XML serialisation of Resource Description Framework
+ model, designed with human-readability in mind.
+ meaning: edam:format_3257
+ title: Notation3
+ edam:format_3261:
+ text: edam:format_3261
+ description: Resource Description Framework (RDF) XML format.
+ meaning: edam:format_3261
+ title: RDF/XML
+ edam:format_3262:
+ text: edam:format_3262
+ description: OWL ontology XML serialisation format.
+ meaning: edam:format_3262
+ title: OWL/XML
+ edam:format_3281:
+ text: edam:format_3281
+ description: The A2M format is used as the primary format for multiple alignments
+ of protein or nucleic-acid sequences in the SAM suite of tools. It is a
+ small modification of FASTA format for sequences and is compatible with
+ most tools that read FASTA.
+ meaning: edam:format_3281
+ title: A2M
+ edam:format_3284:
+ text: edam:format_3284
+ description: Standard flowgram format (SFF) is a binary file format used to
+ encode results of pyrosequencing from the 454 Life Sciences platform for
+ high-throughput sequencing.
+ meaning: edam:format_3284
+ title: SFF
+ edam:format_3285:
+ text: edam:format_3285
+ description: The MAP file describes SNPs and is used by the Plink package.
+ meaning: edam:format_3285
+ title: MAP
+ edam:format_3286:
+ text: edam:format_3286
+ description: The PED file describes individuals and genetic data and is used
+ by the Plink package.
+ meaning: edam:format_3286
+ title: PED
+ edam:format_3287:
+ text: edam:format_3287
+ description: Data format for a metadata on an individual and their genetic
+ data.
+ meaning: edam:format_3287
+ title: Individual genetic data format
+ edam:format_3288:
+ text: edam:format_3288
+ description: The PED/MAP file describes data used by the Plink package.
+ meaning: edam:format_3288
+ title: PED/MAP
+ edam:format_3309:
+ text: edam:format_3309
+ description: File format of a CT (Connectivity Table) file from the RNAstructure
+ package.
+ meaning: edam:format_3309
+ title: CT
+ edam:format_3310:
+ text: edam:format_3310
+ description: XRNA old input style format.
+ meaning: edam:format_3310
+ title: SS
+ edam:format_3311:
+ text: edam:format_3311
+ description: RNA Markup Language.
+ meaning: edam:format_3311
+ title: RNAML
+ edam:format_3312:
+ text: edam:format_3312
+ description: Format for the Genetic Data Environment (GDE).
+ meaning: edam:format_3312
+ title: GDE
+ edam:format_3313:
+ text: edam:format_3313
+ description: A multiple alignment in vertical format, as used in the AMPS
+ (Alignment of Multiple Protein Sequences) package.
+ meaning: edam:format_3313
+ title: BLC
+ edam:format_3326:
+ text: edam:format_3326
+ description: Format of a data index of some type.
+ meaning: edam:format_3326
+ title: Data index format
+ edam:format_3327:
+ text: edam:format_3327
+ description: BAM indexing format.
+ meaning: edam:format_3327
+ title: BAI
+ edam:format_3328:
+ text: edam:format_3328
+ description: HMMER profile HMM file for HMMER versions 2.x.
+ meaning: edam:format_3328
+ title: HMMER2
+ edam:format_3329:
+ text: edam:format_3329
+ description: HMMER profile HMM file for HMMER versions 3.x.
+ meaning: edam:format_3329
+ title: HMMER3
+ edam:format_3330:
+ text: edam:format_3330
+ description: PO is the output format of Partial Order Alignment program (POA)
+ performing Multiple Sequence Alignment (MSA).
+ meaning: edam:format_3330
+ title: PO
+ edam:format_3331:
+ text: edam:format_3331
+ description: XML format as produced by the NCBI Blast package.
+ meaning: edam:format_3331
+ title: BLAST XML results format
+ edam:format_3462:
+ text: edam:format_3462
+ description: Reference-based compression of alignment format.
+ meaning: edam:format_3462
+ title: CRAM
+ edam:format_3464:
+ text: edam:format_3464
+ description: JavaScript Object Notation format; a lightweight, text-based
+ format to represent tree-structured data using key-value pairs.
+ meaning: edam:format_3464
+ title: JSON
+ edam:format_3466:
+ text: edam:format_3466
+ description: Encapsulated PostScript format.
+ meaning: edam:format_3466
+ title: EPS
+ edam:format_3467:
+ text: edam:format_3467
+ description: Graphics Interchange Format.
+ meaning: edam:format_3467
+ title: GIF
+ edam:format_3468:
+ text: edam:format_3468
+ description: Microsoft Excel spreadsheet format.
+ meaning: edam:format_3468
+ title: xls
+ edam:format_3475:
+ text: edam:format_3475
+ description: Tabular data represented as tab-separated values in a text file.
+ meaning: edam:format_3475
+ title: TSV
+ edam:format_3477:
+ text: edam:format_3477
+ description: Format of the cytoscape input file of gene expression ratios
+ or values are specified over one or more experiments.
+ meaning: edam:format_3477
+ title: Cytoscape input file format
+ edam:format_3484:
+ text: edam:format_3484
+ description: Bowtie format for indexed reference genome for "small" genomes.
+ meaning: edam:format_3484
+ title: ebwt
+ edam:format_3485:
+ text: edam:format_3485
+ description: Rich sequence format.
+ meaning: edam:format_3485
+ title: RSF
+ edam:format_3486:
+ text: edam:format_3486
+ description: Some format based on the GCG format.
+ meaning: edam:format_3486
+ title: GCG format variant
+ edam:format_3487:
+ text: edam:format_3487
+ description: Bioinformatics Sequence Markup Language format.
+ meaning: edam:format_3487
+ title: BSML
+ edam:format_3491:
+ text: edam:format_3491
+ description: Bowtie format for indexed reference genome for "large" genomes.
+ meaning: edam:format_3491
+ title: ebwtl
+ edam:format_3499:
+ text: edam:format_3499
+ description: Ensembl standard format for variation data.
+ meaning: edam:format_3499
+ title: Ensembl variation file format
+ edam:format_3506:
+ text: edam:format_3506
+ description: Microsoft Word format.
+ meaning: edam:format_3506
+ title: docx
+ edam:format_3507:
+ text: edam:format_3507
+ description: Format of documents including word processor, spreadsheet and
+ presentation.
+ meaning: edam:format_3507
+ title: Document format
+ edam:format_3508:
+ text: edam:format_3508
+ description: Portable Document Format.
+ meaning: edam:format_3508
+ title: PDF
+ edam:format_3547:
+ text: edam:format_3547
+ description: Format used for images and image metadata.
+ meaning: edam:format_3547
+ title: Image format
+ edam:format_3548:
+ text: edam:format_3548
+ description: Medical image format corresponding to the Digital Imaging and
+ Communications in Medicine (DICOM) standard.
+ meaning: edam:format_3548
+ title: DICOM format
+ edam:format_3549:
+ text: edam:format_3549
+ description: An open file format from the Neuroimaging Informatics Technology
+ Initiative (NIfTI) commonly used to store brain imaging data obtained using
+ Magnetic Resonance Imaging (MRI) methods.
+ meaning: edam:format_3549
+ title: nii
+ edam:format_3550:
+ text: edam:format_3550
+ description: Text-based tagged file format for medical images generated using
+ the MetaImage software package.
+ meaning: edam:format_3550
+ title: mhd
+ edam:format_3551:
+ text: edam:format_3551
+ description: Nearly Raw Rasta Data format designed to support scientific visualisation
+ and image processing involving N-dimensional raster data.
+ meaning: edam:format_3551
+ title: nrrd
+ edam:format_3554:
+ text: edam:format_3554
+ description: File format used for scripts written in the R programming language
+ for execution within the R software environment, typically for statistical
+ computation and graphics.
+ meaning: edam:format_3554
+ title: R file format
+ edam:format_3555:
+ text: edam:format_3555
+ description: File format used for scripts for the Statistical Package for
+ the Social Sciences.
+ meaning: edam:format_3555
+ title: SPSS
+ edam:format_3556:
+ text: edam:format_3556
+ description: MIME HTML format for Web pages, which can include external resources,
+ including images, Flash animations and so on.
+ meaning: edam:format_3556
+ title: MHTML
+ edam:format_3578:
+ text: edam:format_3578
+ description: Proprietary file format for (raw) BeadArray data used by genomewide
+ profiling platforms from Illumina Inc. This format is output directly from
+ the scanner and stores summary intensities for each probe-type on an array.
+ meaning: edam:format_3578
+ title: IDAT
+ edam:format_3579:
+ text: edam:format_3579
+ description: Joint Picture Group file format for lossy graphics file.
+ meaning: edam:format_3579
+ title: JPG
+ edam:format_3580:
+ text: edam:format_3580
+ description: Reporter Code Count-A data file (.csv) output by the Nanostring
+ nCounter Digital Analyzer, which contains gene sample information, probe
+ information and probe counts.
+ meaning: edam:format_3580
+ title: rcc
+ edam:format_3581:
+ text: edam:format_3581
+ description: ARFF (Attribute-Relation File Format) is an ASCII text file format
+ that describes a list of instances sharing a set of attributes.
+ meaning: edam:format_3581
+ title: arff
+ edam:format_3582:
+ text: edam:format_3582
+ description: AFG is a single text-based file assembly format that holds read
+ and consensus information together.
+ meaning: edam:format_3582
+ title: afg
+ edam:format_3583:
+ text: edam:format_3583
+ description: The bedGraph format allows display of continuous-valued data
+ in track format. This display type is useful for probability scores and
+ transcriptome data.
+ meaning: edam:format_3583
+ title: bedgraph
+ edam:format_3584:
+ text: edam:format_3584
+ description: Browser Extensible Data (BED) format of sequence annotation track
+ that strictly does not contain non-standard fields beyond the first 3 columns.
+ meaning: edam:format_3584
+ title: bedstrict
+ edam:format_3585:
+ text: edam:format_3585
+ description: BED file format where each feature is described by chromosome,
+ start, end, name, score, and strand.
+ meaning: edam:format_3585
+ title: bed6
+ edam:format_3586:
+ text: edam:format_3586
+ description: A BED file where each feature is described by all twelve columns.
+ meaning: edam:format_3586
+ title: bed12
+ edam:format_3587:
+ text: edam:format_3587
+ description: Tabular format of chromosome names and sizes used by Galaxy.
+ meaning: edam:format_3587
+ title: chrominfo
+ edam:format_3588:
+ text: edam:format_3588
+ description: Custom Sequence annotation track format used by Galaxy.
+ meaning: edam:format_3588
+ title: customtrack
+ edam:format_3589:
+ text: edam:format_3589
+ description: Color space FASTA format sequence variant.
+ meaning: edam:format_3589
+ title: csfasta
+ edam:format_3590:
+ text: edam:format_3590
+ description: HDF5 is a data model, library, and file format for storing and
+ managing data, based on Hierarchical Data Format (HDF).
+ meaning: edam:format_3590
+ title: HDF5
+ edam:format_3591:
+ text: edam:format_3591
+ description: A versatile bitmap format.
+ meaning: edam:format_3591
+ title: TIFF
+ edam:format_3592:
+ text: edam:format_3592
+ description: Standard bitmap storage format in the Microsoft Windows environment.
+ meaning: edam:format_3592
+ title: BMP
+ edam:format_3593:
+ text: edam:format_3593
+ description: IM is a format used by LabEye and other applications based on
+ the IFUNC image processing library.
+ meaning: edam:format_3593
+ title: im
+ edam:format_3594:
+ text: edam:format_3594
+ description: Photo CD format, which is the highest resolution format for images
+ on a CD.
+ meaning: edam:format_3594
+ title: pcd
+ edam:format_3595:
+ text: edam:format_3595
+ description: PCX is an image file format that uses a simple form of run-length
+ encoding. It is lossless.
+ meaning: edam:format_3595
+ title: pcx
+ edam:format_3596:
+ text: edam:format_3596
+ description: The PPM format is a lowest common denominator color image file
+ format.
+ meaning: edam:format_3596
+ title: ppm
+ edam:format_3597:
+ text: edam:format_3597
+ description: PSD (Photoshop Document) is a proprietary file that allows the
+ user to work with the images' individual layers even after the file has
+ been saved.
+ meaning: edam:format_3597
+ title: psd
+ edam:format_3598:
+ text: edam:format_3598
+ description: X BitMap is a plain text binary image format used by the X Window
+ System used for storing cursor and icon bitmaps used in the X GUI.
+ meaning: edam:format_3598
+ title: xbm
+ edam:format_3599:
+ text: edam:format_3599
+ description: X PixMap (XPM) is an image file format used by the X Window System,
+ it is intended primarily for creating icon pixmaps, and supports transparent
+ pixels.
+ meaning: edam:format_3599
+ title: xpm
+ edam:format_3600:
+ text: edam:format_3600
+ description: RGB file format is the native raster graphics file format for
+ Silicon Graphics workstations.
+ meaning: edam:format_3600
+ title: rgb
+ edam:format_3601:
+ text: edam:format_3601
+ description: The PBM format is a lowest common denominator monochrome file
+ format. It serves as the common language of a large family of bitmap image
+ conversion filters.
+ meaning: edam:format_3601
+ title: pbm
+ edam:format_3602:
+ text: edam:format_3602
+ description: The PGM format is a lowest common denominator grayscale file
+ format.
+ meaning: edam:format_3602
+ title: pgm
+ edam:format_3603:
+ text: edam:format_3603
+ description: PNG is a file format for image compression.
+ meaning: edam:format_3603
+ title: PNG
+ edam:format_3604:
+ text: edam:format_3604
+ description: Scalable Vector Graphics (SVG) is an XML-based vector image format
+ for two-dimensional graphics with support for interactivity and animation.
+ meaning: edam:format_3604
+ title: SVG
+ edam:format_3605:
+ text: edam:format_3605
+ description: Sun Raster is a raster graphics file format used on SunOS by
+ Sun Microsystems.
+ meaning: edam:format_3605
+ title: rast
+ edam:format_3606:
+ text: edam:format_3606
+ description: Textual report format for sequence quality for reports from sequencing
+ machines.
+ meaning: edam:format_3606
+ title: Sequence quality report format (text)
+ edam:format_3607:
+ text: edam:format_3607
+ description: FASTQ format subset for Phred sequencing quality score data only
+ (no sequences).
+ meaning: edam:format_3607
+ title: qual
+ edam:format_3608:
+ text: edam:format_3608
+ description: FASTQ format subset for Phred sequencing quality score data only
+ (no sequences) for Solexa/Illumina 1.0 format.
+ meaning: edam:format_3608
+ title: qualsolexa
+ edam:format_3609:
+ text: edam:format_3609
+ description: FASTQ format subset for Phred sequencing quality score data only
+ (no sequences) from Illumina 1.5 and before Illumina 1.8.
+ meaning: edam:format_3609
+ title: qualillumina
+ edam:format_3610:
+ text: edam:format_3610
+ description: FASTQ format subset for Phred sequencing quality score data only
+ (no sequences) for SOLiD data.
+ meaning: edam:format_3610
+ title: qualsolid
+ edam:format_3611:
+ text: edam:format_3611
+ description: FASTQ format subset for Phred sequencing quality score data only
+ (no sequences) from 454 sequencers.
+ meaning: edam:format_3611
+ title: qual454
+ edam:format_3612:
+ text: edam:format_3612
+ description: Human ENCODE peak format.
+ meaning: edam:format_3612
+ title: ENCODE peak format
+ edam:format_3613:
+ text: edam:format_3613
+ description: Human ENCODE narrow peak format.
+ meaning: edam:format_3613
+ title: ENCODE narrow peak format
+ edam:format_3614:
+ text: edam:format_3614
+ description: Human ENCODE broad peak format.
+ meaning: edam:format_3614
+ title: ENCODE broad peak format
+ edam:format_3615:
+ text: edam:format_3615
+ description: Blocked GNU Zip format.
+ meaning: edam:format_3615
+ title: bgzip
+ edam:format_3616:
+ text: edam:format_3616
+ description: TAB-delimited genome position file index format.
+ meaning: edam:format_3616
+ title: tabix
+ edam:format_3617:
+ text: edam:format_3617
+ description: Data format for graph data.
+ meaning: edam:format_3617
+ title: Graph format
+ edam:format_3618:
+ text: edam:format_3618
+ description: XML-based format used to store graph descriptions within Galaxy.
+ meaning: edam:format_3618
+ title: xgmml
+ edam:format_3619:
+ text: edam:format_3619
+ description: SIF (simple interaction file) Format - a network/pathway format
+ used for instance in cytoscape.
+ meaning: edam:format_3619
+ title: sif
+ edam:format_3620:
+ text: edam:format_3620
+ description: MS Excel spreadsheet format consisting of a set of XML documents
+ stored in a ZIP-compressed file.
+ meaning: edam:format_3620
+ title: xlsx
+ edam:format_3621:
+ text: edam:format_3621
+ description: Data format used by the SQLite database.
+ meaning: edam:format_3621
+ title: SQLite format
+ edam:format_3622:
+ text: edam:format_3622
+ description: Data format used by the SQLite database conformant to the Gemini
+ schema.
+ meaning: edam:format_3622
+ title: Gemini SQLite format
+ edam:format_3624:
+ text: edam:format_3624
+ description: An index of a genome database, indexed for use by the snpeff
+ tool.
+ meaning: edam:format_3624
+ title: snpeffdb
+ edam:format_3626:
+ text: edam:format_3626
+ description: Binary format used by MATLAB files to store workspace variables.
+ meaning: edam:format_3626
+ title: MAT
+ edam:format_3650:
+ text: edam:format_3650
+ description: Format used by netCDF software library for writing and reading
+ chromatography-MS data files. Also used to store trajectory atom coordinates
+ information, such as the ones obtained by Molecular Dynamics simulations.
+ meaning: edam:format_3650
+ title: NetCDF
+ edam:format_3651:
+ text: edam:format_3651
+ description: Mascot Generic Format. Encodes multiple MS/MS spectra in a single
+ file.
+ meaning: edam:format_3651
+ title: MGF
+ edam:format_3652:
+ text: edam:format_3652
+ description: Spectral data format file where each spectrum is written to a
+ separate file.
+ meaning: edam:format_3652
+ title: dta
+ edam:format_3653:
+ text: edam:format_3653
+ description: Spectral data file similar to dta.
+ meaning: edam:format_3653
+ title: pkl
+ edam:format_3654:
+ text: edam:format_3654
+ description: Common file format for proteomics mass spectrometric data developed
+ at the Seattle Proteome Center/Institute for Systems Biology.
+ meaning: edam:format_3654
+ title: mzXML
+ edam:format_3655:
+ text: edam:format_3655
+ description: Open data format for the storage, exchange, and processing of
+ peptide sequence assignments of MS/MS scans, intended to provide a common
+ data output format for many different MS/MS search engines and subsequent
+ peptide-level analyses.
+ meaning: edam:format_3655
+ title: pepXML
+ edam:format_3657:
+ text: edam:format_3657
+ description: Graphical Pathway Markup Language (GPML) is an XML format used
+ for exchanging biological pathways.
+ meaning: edam:format_3657
+ title: GPML
+ edam:format_3665:
+ text: edam:format_3665
+ description: A list of k-mers and their occurrences in a dataset. Can also
+ be used as an implicit De Bruijn graph.
+ meaning: edam:format_3665
+ title: K-mer countgraph
+ edam:format_3681:
+ text: edam:format_3681
+ description: mzTab is a light-weight, tab-delimited format for mass spectrometry-based
+ proteomics data.
+ meaning: edam:format_3681
+ title: mzTab
+ edam:format_3682:
+ text: edam:format_3682
+ description: imzML metadata is a data format for mass spectrometry imaging
+ metadata.
+ meaning: edam:format_3682
+ title: imzML metadata file
+ edam:format_3683:
+ text: edam:format_3683
+ description: qcML is an XML format for quality-related data of mass spectrometry
+ and other high-throughput measurements.
+ meaning: edam:format_3683
+ title: qcML
+ edam:format_3684:
+ text: edam:format_3684
+ description: PRIDE XML is an XML format for mass spectra, peptide and protein
+ identifications, and metadata about a corresponding measurement, sample,
+ experiment.
+ meaning: edam:format_3684
+ title: PRIDE XML
+ edam:format_3685:
+ text: edam:format_3685
+ description: Simulation Experiment Description Markup Language (SED-ML) is
+ an XML format for encoding simulation setups, according to the MIASE (Minimum
+ Information About a Simulation Experiment) requirements.
+ meaning: edam:format_3685
+ title: SED-ML
+ edam:format_3686:
+ text: edam:format_3686
+ description: Open Modeling EXchange format (OMEX) is a ZIPped format for encapsulating
+ all information necessary for a modeling and simulation project in systems
+ biology.
+ meaning: edam:format_3686
+ title: COMBINE OMEX
+ edam:format_3687:
+ text: edam:format_3687
+ description: ISA-Tab stands for Investigation / Study / Assay (ISA) tab-delimited
+ (Tab) format, and it is comprised of metadata describing observational or
+ experimental scientific studies.
+ meaning: edam:format_3687
+ title: ISA-Tab
+ edam:format_3688:
+ text: edam:format_3688
+ description: SBtab is a tabular format for biochemical network models.
+ meaning: edam:format_3688
+ title: SBtab
+ edam:format_3689:
+ text: edam:format_3689
+ description: Biological Connection Markup Language (BCML) is an XML format
+ for biological pathways.
+ meaning: edam:format_3689
+ title: BCML
+ edam:format_3690:
+ text: edam:format_3690
+ description: Biological Dynamics Markup Language (BDML) is an XML format for
+ quantitative data describing biological dynamics.
+ meaning: edam:format_3690
+ title: BDML
+ edam:format_3691:
+ text: edam:format_3691
+ description: Biological Expression Language (BEL) is a textual format for
+ representing scientific findings in life sciences in a computable form.
+ meaning: edam:format_3691
+ title: BEL
+ edam:format_3692:
+ text: edam:format_3692
+ description: SBGN-ML is an XML format for Systems Biology Graphical Notation
+ (SBGN) diagrams of biological pathways or networks.
+ meaning: edam:format_3692
+ title: SBGN-ML
+ edam:format_3693:
+ text: edam:format_3693
+ description: AGP is a tabular format for a sequence assembly (a contig, a
+ scaffold/supercontig, or a chromosome).
+ meaning: edam:format_3693
+ title: AGP
+ edam:format_3696:
+ text: edam:format_3696
+ description: PostScript format.
+ meaning: edam:format_3696
+ title: PS
+ edam:format_3698:
+ text: edam:format_3698
+ description: SRA archive format (SRA) is the archive format used for input
+ to the NCBI Sequence Read Archive.
+ meaning: edam:format_3698
+ title: SRA format
+ edam:format_3699:
+ text: edam:format_3699
+ description: VDB ('vertical database') is the native format used for export
+ from the NCBI Sequence Read Archive.
+ meaning: edam:format_3699
+ title: VDB
+ edam:format_3701:
+ text: edam:format_3701
+ description: A five-column, tab-delimited table of feature locations and qualifiers
+ for importing annotation into an existing Sequin submission (an NCBI tool
+ for submitting and updating GenBank entries).
+ meaning: edam:format_3701
+ title: Sequin format
+ edam:format_3702:
+ text: edam:format_3702
+ description: Proprietary mass-spectrometry format of Thermo Scientific's ProteomeDiscoverer
+ software.
+ meaning: edam:format_3702
+ title: MSF
+ edam:format_3706:
+ text: edam:format_3706
+ description: Data format for biodiversity data.
+ meaning: edam:format_3706
+ title: Biodiversity data format
+ edam:format_3708:
+ text: edam:format_3708
+ description: Exchange format of the Access to Biological Collections Data
+ (ABCD) Schema; a standard for the access to and exchange of data about specimens
+ and observations (primary biodiversity data).
+ meaning: edam:format_3708
+ title: ABCD format
+ edam:format_3709:
+ text: edam:format_3709
+ description: Tab-delimited text files of GenePattern that contain a column
+ for each sample, a row for each gene, and an expression value for each gene
+ in each sample.
+ meaning: edam:format_3709
+ title: GCT/Res format
+ edam:format_3710:
+ text: edam:format_3710
+ description: Mass spectrum file format from QSTAR and QTRAP instruments (ABI/Sciex).
+ meaning: edam:format_3710
+ title: WIFF format
+ edam:format_3711:
+ text: edam:format_3711
+ description: Output format used by X! series search engines that is based
+ on the XML language BIOML.
+ meaning: edam:format_3711
+ title: X!Tandem XML
+ edam:format_3712:
+ text: edam:format_3712
+ description: Proprietary file format for mass spectrometry data from Thermo
+ Scientific.
+ meaning: edam:format_3712
+ title: Thermo RAW
+ edam:format_3713:
+ text: edam:format_3713
+ description: '"Raw" result file from Mascot database search.'
+ meaning: edam:format_3713
+ title: Mascot .dat file
+ edam:format_3714:
+ text: edam:format_3714
+ description: Format of peak list files from Andromeda search engine (MaxQuant)
+ that consist of arbitrarily many spectra.
+ meaning: edam:format_3714
+ title: MaxQuant APL peaklist format
+ edam:format_3725:
+ text: edam:format_3725
+ description: Synthetic Biology Open Language (SBOL) is an XML format for the
+ specification and exchange of biological design information in synthetic
+ biology.
+ meaning: edam:format_3725
+ title: SBOL
+ edam:format_3726:
+ text: edam:format_3726
+ description: PMML uses XML to represent mining models. The structure of the
+ models is described by an XML Schema.
+ meaning: edam:format_3726
+ title: PMML
+ edam:format_3727:
+ text: edam:format_3727
+ description: Image file format used by the Open Microscopy Environment (OME).
+ meaning: edam:format_3727
+ title: OME-TIFF
+ edam:format_3728:
+ text: edam:format_3728
+ description: The LocARNA PP format combines sequence or alignment information
+ and (respectively, single or consensus) ensemble probabilities into an PP
+ 2.0 record.
+ meaning: edam:format_3728
+ title: LocARNA PP
+ edam:format_3729:
+ text: edam:format_3729
+ description: Input format used by the Database of Genotypes and Phenotypes
+ (dbGaP).
+ meaning: edam:format_3729
+ title: dbGaP format
+ edam:format_3746:
+ text: edam:format_3746
+ description: The BIological Observation Matrix (BIOM) is a format for representing
+ biological sample by observation contingency tables in broad areas of comparative
+ omics. The primary use of this format is to represent OTU tables and metagenome
+ tables.
+ meaning: edam:format_3746
+ title: BIOM format
+ edam:format_3747:
+ text: edam:format_3747
+ description: A format for storage, exchange, and processing of protein identifications
+ created from ms/ms-derived peptide sequence data.
+ meaning: edam:format_3747
+ title: protXML
+ edam:format_3748:
+ text: edam:format_3748
+ description: A linked data format enables publishing structured data as linked
+ data (Linked Data), so that the data can be interlinked and become more
+ useful through semantic queries.
+ meaning: edam:format_3748
+ title: Linked data format
+ edam:format_3749:
+ text: edam:format_3749
+ description: JSON-LD, or JavaScript Object Notation for Linked Data, is a
+ method of encoding Linked Data using JSON.
+ meaning: edam:format_3749
+ title: JSON-LD
+ edam:format_3750:
+ text: edam:format_3750
+ description: YAML (YAML Ain't Markup Language) is a human-readable tree-structured
+ data serialisation language.
+ meaning: edam:format_3750
+ title: YAML
+ edam:format_3751:
+ text: edam:format_3751
+ description: Tabular data represented as values in a text file delimited by
+ some character.
+ meaning: edam:format_3751
+ title: DSV
+ edam:format_3752:
+ text: edam:format_3752
+ description: Tabular data represented as comma-separated values in a text
+ file.
+ meaning: edam:format_3752
+ title: CSV
+ edam:format_3758:
+ text: edam:format_3758
+ description: '"Raw" result file from SEQUEST database search.'
+ meaning: edam:format_3758
+ title: SEQUEST .out file
+ edam:format_3764:
+ text: edam:format_3764
+ description: XML file format for files containing information about peptide
+ identifications from mass spectrometry data analysis carried out with OpenMS.
+ meaning: edam:format_3764
+ title: idXML
+ edam:format_3765:
+ text: edam:format_3765
+ description: Data table formatted such that it can be passed/streamed within
+ the KNIME platform.
+ meaning: edam:format_3765
+ title: KNIME datatable format
+ edam:format_3770:
+ text: edam:format_3770
+ description: UniProtKB XML sequence features format is an XML format available
+ for downloading UniProt entries.
+ meaning: edam:format_3770
+ title: UniProtKB XML
+ edam:format_3771:
+ text: edam:format_3771
+ description: UniProtKB RDF sequence features format is an RDF format available
+ for downloading UniProt entries (in RDF/XML).
+ meaning: edam:format_3771
+ title: UniProtKB RDF
+ edam:format_3772:
+ text: edam:format_3772
+ description: BioJSON is a BioXSD-schema-based JSON format of sequence-based
+ data and some other common data - sequence records, alignments, feature
+ records, references to resources, and more - optimised for integrative bioinformatics,
+ web applications and APIs, and object-oriented programming.
+ meaning: edam:format_3772
+ title: BioJSON (BioXSD)
+ edam:format_3773:
+ text: edam:format_3773
+ description: BioYAML is a BioXSD-schema-based YAML format of sequence-based
+ data and some other common data - sequence records, alignments, feature
+ records, references to resources, and more - optimised for integrative bioinformatics,
+ web APIs, human readability and editing, and object-oriented programming.
+ meaning: edam:format_3773
+ title: BioYAML
+ edam:format_3774:
+ text: edam:format_3774
+ description: BioJSON is a JSON format of single multiple sequence alignments,
+ with their annotations, features, and custom visualisation and application
+ settings for the Jalview workbench.
+ meaning: edam:format_3774
+ title: BioJSON (Jalview)
+ edam:format_3775:
+ text: edam:format_3775
+ description: GSuite is a tabular format for collections of genome or sequence
+ feature tracks, suitable for integrative multi-track analysis. GSuite contains
+ links to genome/sequence tracks, with additional metadata.
+ meaning: edam:format_3775
+ title: GSuite
+ edam:format_3776:
+ text: edam:format_3776
+ description: BTrack is an HDF5-based binary format for genome or sequence
+ feature tracks and their collections, suitable for integrative multi-track
+ analysis. BTrack is a binary, compressed alternative to the GTrack and GSuite
+ formats.
+ meaning: edam:format_3776
+ title: BTrack
+ edam:format_3777:
+ text: edam:format_3777
+ description: The FAO/Bioversity/IPGRI Multi-Crop Passport Descriptors (MCPD)
+ is an international standard format for exchange of germplasm information.
+ meaning: edam:format_3777
+ title: MCPD
+ edam:format_3780:
+ text: edam:format_3780
+ description: Data format of an annotated text, e.g. with recognised entities,
+ concepts, and relations.
+ meaning: edam:format_3780
+ title: Annotated text format
+ edam:format_3781:
+ text: edam:format_3781
+ description: JSON format of annotated scientific text used by PubAnnotations
+ and other tools.
+ meaning: edam:format_3781
+ title: PubAnnotation format
+ edam:format_3782:
+ text: edam:format_3782
+ description: BioC is a standardised XML format for sharing and integrating
+ text data and annotations.
+ meaning: edam:format_3782
+ title: BioC
+ edam:format_3783:
+ text: edam:format_3783
+ description: Native textual export format of annotated scientific text from
+ PubTator.
+ meaning: edam:format_3783
+ title: PubTator format
+ edam:format_3784:
+ text: edam:format_3784
+ description: A format of text annotation using the linked-data Open Annotation
+ Data Model, serialised typically in RDF or JSON-LD.
+ meaning: edam:format_3784
+ title: Open Annotation format
+ edam:format_3785:
+ text: edam:format_3785
+ description: A family of similar formats of text annotation, used by BRAT
+ and other tools, known as BioNLP Shared Task format (BioNLP 2009 Shared
+ Task on Event Extraction, BioNLP Shared Task 2011, BioNLP Shared Task 2013),
+ BRAT format, BRAT standoff format, and similar.
+ meaning: edam:format_3785
+ title: BioNLP Shared Task format
+ edam:format_3787:
+ text: edam:format_3787
+ description: A query language (format) for structured database queries.
+ meaning: edam:format_3787
+ title: Query language
+ edam:format_3788:
+ text: edam:format_3788
+ description: SQL (Structured Query Language) is the de-facto standard query
+ language (format of queries) for querying and manipulating data in relational
+ databases.
+ meaning: edam:format_3788
+ title: SQL
+ edam:format_3789:
+ text: edam:format_3789
+ description: XQuery (XML Query) is a query language (format of queries) for
+ querying and manipulating structured and unstructured data, usually in the
+ form of XML, text, and with vendor-specific extensions for other data formats
+ (JSON, binary, etc.).
+ meaning: edam:format_3789
+ title: XQuery
+ edam:format_3790:
+ text: edam:format_3790
+ description: SPARQL (SPARQL Protocol and RDF Query Language) is a semantic
+ query language for querying and manipulating data stored in Resource Description
+ Framework (RDF) format.
+ meaning: edam:format_3790
+ title: SPARQL
+ edam:format_3804:
+ text: edam:format_3804
+ description: XML format for XML Schema.
+ meaning: edam:format_3804
+ title: xsd
+ edam:format_3811:
+ text: edam:format_3811
+ description: XMFA format stands for eXtended Multi-FastA format and is used
+ to store collinear sub-alignments that constitute a single genome alignment.
+ meaning: edam:format_3811
+ title: XMFA
+ edam:format_3812:
+ text: edam:format_3812
+ description: The GEN file format contains genetic data and describes SNPs.
+ meaning: edam:format_3812
+ title: GEN
+ edam:format_3813:
+ text: edam:format_3813
+ description: The SAMPLE file format contains information about each individual
+ i.e. individual IDs, covariates, phenotypes and missing data proportions,
+ from a GWAS study.
+ meaning: edam:format_3813
+ title: SAMPLE file format
+ edam:format_3814:
+ text: edam:format_3814
+ description: SDF is one of a family of chemical-data file formats developed
+ by MDL Information Systems; it is intended especially for structural information.
+ meaning: edam:format_3814
+ title: SDF
+ edam:format_3815:
+ text: edam:format_3815
+ description: An MDL Molfile is a file format for holding information about
+ the atoms, bonds, connectivity and coordinates of a molecule.
+ meaning: edam:format_3815
+ title: Molfile
+ edam:format_3816:
+ text: edam:format_3816
+ description: Complete, portable representation of a SYBYL molecule. ASCII
+ file which contains all the information needed to reconstruct a SYBYL molecule.
+ meaning: edam:format_3816
+ title: Mol2
+ edam:format_3817:
+ text: edam:format_3817
+ description: format for the LaTeX document preparation system.
+ meaning: edam:format_3817
+ title: latex
+ edam:format_3818:
+ text: edam:format_3818
+ description: Tab-delimited text file format used by Eland - the read-mapping
+ program distributed by Illumina with its sequencing analysis pipeline -
+ which maps short Solexa sequence reads to the human reference genome.
+ meaning: edam:format_3818
+ title: ELAND format
+ edam:format_3819:
+ text: edam:format_3819
+ description: Phylip multiple alignment sequence format, less stringent than
+ PHYLIP format.
+ meaning: edam:format_3819
+ title: Relaxed PHYLIP Interleaved
+ edam:format_3820:
+ text: edam:format_3820
+ description: Phylip multiple alignment sequence format, less stringent than
+ PHYLIP sequential format (format_1998).
+ meaning: edam:format_3820
+ title: Relaxed PHYLIP Sequential
+ edam:format_3821:
+ text: edam:format_3821
+ description: Default XML format of VisANT, containing all the network information.
+ meaning: edam:format_3821
+ title: VisML
+ edam:format_3822:
+ text: edam:format_3822
+ description: GML (Graph Modeling Language) is a text file format supporting
+ network data with a very easy syntax. It is used by Graphlet, Pajek, yEd,
+ LEDA and NetworkX.
+ meaning: edam:format_3822
+ title: GML
+ edam:format_3823:
+ text: edam:format_3823
+ description: FASTG is a format for faithfully representing genome assemblies
+ in the face of allelic polymorphism and assembly uncertainty.
+ meaning: edam:format_3823
+ title: FASTG
+ edam:format_3824:
+ text: edam:format_3824
+ description: Data format for raw data from a nuclear magnetic resonance (NMR)
+ spectroscopy experiment.
+ meaning: edam:format_3824
+ title: NMR data format
+ edam:format_3825:
+ text: edam:format_3825
+ description: nmrML is an MSI supported XML-based open access format for metabolomics
+ NMR raw and processed spectral data. It is accompanies by an nmrCV (controlled
+ vocabulary) to allow ontology-based annotations.
+ meaning: edam:format_3825
+ title: nmrML
+ edam:format_3826:
+ text: edam:format_3826
+ description: . proBAM is an adaptation of BAM (format_2572), which was extended
+ to meet specific requirements entailed by proteomics data.
+ meaning: edam:format_3826
+ title: proBAM
+ edam:format_3827:
+ text: edam:format_3827
+ description: . proBED is an adaptation of BED (format_3003), which was extended
+ to meet specific requirements entailed by proteomics data.
+ meaning: edam:format_3827
+ title: proBED
+ edam:format_3828:
+ text: edam:format_3828
+ description: Data format for raw microarray data.
+ meaning: edam:format_3828
+ title: Raw microarray data format
+ edam:format_3829:
+ text: edam:format_3829
+ description: GenePix Results (GPR) text file format developed by Axon Instruments
+ that is used to save GenePix Results data.
+ meaning: edam:format_3829
+ title: GPR
+ edam:format_3830:
+ text: edam:format_3830
+ description: Binary format used by the ARB software suite.
+ meaning: edam:format_3830
+ title: ARB
+ edam:format_3832:
+ text: edam:format_3832
+ description: OpenMS format for grouping features in one map or across several
+ maps.
+ meaning: edam:format_3832
+ title: consensusXML
+ edam:format_3833:
+ text: edam:format_3833
+ description: OpenMS format for quantitation results (LC/MS features).
+ meaning: edam:format_3833
+ title: featureXML
+ edam:format_3834:
+ text: edam:format_3834
+ description: Now deprecated data format of the HUPO Proteomics Standards Initiative.
+ Replaced by mzML (format_3244).
+ meaning: edam:format_3834
+ title: mzData
+ edam:format_3835:
+ text: edam:format_3835
+ description: Format supported by the Tide tool for identifying peptides from
+ tandem mass spectra.
+ meaning: edam:format_3835
+ title: TIDE TXT
+ edam:format_3836:
+ text: edam:format_3836
+ description: XML format as produced by the NCBI Blast package v2.
+ meaning: edam:format_3836
+ title: BLAST XML v2 results format
+ edam:format_3838:
+ text: edam:format_3838
+ description: Microsoft Powerpoint format.
+ meaning: edam:format_3838
+ title: pptx
+ edam:format_3839:
+ text: edam:format_3839
+ description: ibd is a data format for mass spectrometry imaging data.
+ meaning: edam:format_3839
+ title: ibd
+ edam:format_3841:
+ text: edam:format_3841
+ description: Data format used in Natural Language Processing.
+ meaning: edam:format_3841
+ title: NLP format
+ edam:format_3843:
+ text: edam:format_3843
+ description: XML input file format for BEAST Software (Bayesian Evolutionary
+ Analysis Sampling Trees).
+ meaning: edam:format_3843
+ title: BEAST
+ edam:format_3844:
+ text: edam:format_3844
+ description: Chado-XML format is a direct mapping of the Chado relational
+ schema into XML.
+ meaning: edam:format_3844
+ title: Chado-XML
+ edam:format_3845:
+ text: edam:format_3845
+ description: 'An alignment format generated by PRANK/PRANKSTER consisting
+ of four elements: newick, nodes, selection and model.'
+ meaning: edam:format_3845
+ title: HSAML
+ edam:format_3846:
+ text: edam:format_3846
+ description: Output xml file from the InterProScan sequence analysis application.
+ meaning: edam:format_3846
+ title: InterProScan XML
+ edam:format_3847:
+ text: edam:format_3847
+ description: The KEGG Markup Language (KGML) is an exchange format of the
+ KEGG pathway maps, which is converted from internally used KGML+ (KGML+SVG)
+ format.
+ meaning: edam:format_3847
+ title: KGML
+ edam:format_3848:
+ text: edam:format_3848
+ description: XML format for collected entries from bibliographic databases
+ MEDLINE and PubMed.
+ meaning: edam:format_3848
+ title: PubMed XML
+ edam:format_3849:
+ text: edam:format_3849
+ description: A set of XML compliant markup components for describing multiple
+ sequence alignments.
+ meaning: edam:format_3849
+ title: MSAML
+ edam:format_3850:
+ text: edam:format_3850
+ description: OrthoXML is designed broadly to allow the storage and comparison
+ of orthology data from any ortholog database. It establishes a structure
+ for describing orthology relationships while still allowing flexibility
+ for database-specific information to be encapsulated in the same format.
+ meaning: edam:format_3850
+ title: OrthoXML
+ edam:format_3851:
+ text: edam:format_3851
+ description: Tree structure of Protein Sequence Database Markup Language generated
+ using Matra software.
+ meaning: edam:format_3851
+ title: PSDML
+ edam:format_3852:
+ text: edam:format_3852
+ description: SeqXML is an XML Schema to describe biological sequences, developed
+ by the Stockholm Bioinformatics Centre.
+ meaning: edam:format_3852
+ title: SeqXML
+ edam:format_3853:
+ text: edam:format_3853
+ description: XML format for the UniParc database.
+ meaning: edam:format_3853
+ title: UniParc XML
+ edam:format_3854:
+ text: edam:format_3854
+ description: XML format for the UniRef reference clusters.
+ meaning: edam:format_3854
+ title: UniRef XML
+ edam:format_3857:
+ text: edam:format_3857
+ description: Common Workflow Language (CWL) format for description of command-line
+ tools and workflows.
+ meaning: edam:format_3857
+ title: CWL
+ edam:format_3858:
+ text: edam:format_3858
+ description: Proprietary file format for mass spectrometry data from Waters.
+ meaning: edam:format_3858
+ title: Waters RAW
+ edam:format_3859:
+ text: edam:format_3859
+ description: A standardized file format for data exchange in mass spectrometry,
+ initially developed for infrared spectrometry.
+ meaning: edam:format_3859
+ title: JCAMP-DX
+ edam:format_3862:
+ text: edam:format_3862
+ description: An NLP format used for annotated textual documents.
+ meaning: edam:format_3862
+ title: NLP annotation format
+ edam:format_3863:
+ text: edam:format_3863
+ description: NLP format used by a specific type of corpus (collection of texts).
+ meaning: edam:format_3863
+ title: NLP corpus format
+ edam:format_3864:
+ text: edam:format_3864
+ description: mirGFF3 is a common format for microRNA data resulting from small-RNA
+ RNA-Seq workflows.
+ meaning: edam:format_3864
+ title: mirGFF3
+ edam:format_3865:
+ text: edam:format_3865
+ description: A "placeholder" concept for formats of annotated RNA data, including
+ e.g. microRNA and RNA-Seq data.
+ meaning: edam:format_3865
+ title: RNA annotation format
+ edam:format_3866:
+ text: edam:format_3866
+ description: File format to store trajectory information for a 3D structure
+ .
+ meaning: edam:format_3866
+ title: Trajectory format
+ edam:format_3867:
+ text: edam:format_3867
+ description: Binary file format to store trajectory information for a 3D structure
+ .
+ meaning: edam:format_3867
+ title: Trajectory format (binary)
+ edam:format_3868:
+ text: edam:format_3868
+ description: Textual file format to store trajectory information for a 3D
+ structure .
+ meaning: edam:format_3868
+ title: Trajectory format (text)
+ edam:format_3873:
+ text: edam:format_3873
+ description: HDF is the name of a set of file formats and libraries designed
+ to store and organize large amounts of numerical data, originally developed
+ at the National Center for Supercomputing Applications at the University
+ of Illinois.
+ meaning: edam:format_3873
+ title: HDF
+ edam:format_3874:
+ text: edam:format_3874
+ description: PCAZip format is a binary compressed file to store atom coordinates
+ based on Essential Dynamics (ED) and Principal Component Analysis (PCA).
+ meaning: edam:format_3874
+ title: PCAzip
+ edam:format_3875:
+ text: edam:format_3875
+ description: Portable binary format for trajectories produced by GROMACS package.
+ meaning: edam:format_3875
+ title: XTC
+ edam:format_3876:
+ text: edam:format_3876
+ description: Trajectory Next Generation (TNG) is a format for storage of molecular
+ simulation data. It is designed and implemented by the GROMACS development
+ group, and it is called to be the substitute of the XTC format.
+ meaning: edam:format_3876
+ title: TNG
+ edam:format_3877:
+ text: edam:format_3877
+ description: The XYZ chemical file format is widely supported by many programs,
+ although many slightly different XYZ file formats coexist (Tinker XYZ, UniChem
+ XYZ, etc.). Basic information stored for each atom in the system are x,
+ y and z coordinates and atom element/atomic number.
+ meaning: edam:format_3877
+ title: XYZ
+ edam:format_3878:
+ text: edam:format_3878
+ description: AMBER trajectory (also called mdcrd), with 10 coordinates per
+ line and format F8.3 (fixed point notation with field width 8 and 3 decimal
+ places).
+ meaning: edam:format_3878
+ title: mdcrd
+ edam:format_3879:
+ text: edam:format_3879
+ description: Format of topology files; containing the static information of
+ a structure molecular system that is needed for a molecular simulation.
+ meaning: edam:format_3879
+ title: Topology format
+ edam:format_3880:
+ text: edam:format_3880
+ description: GROMACS MD package top textual files define an entire structure
+ system topology, either directly, or by including itp files.
+ meaning: edam:format_3880
+ title: GROMACS top
+ edam:format_3881:
+ text: edam:format_3881
+ description: AMBER Prmtop file (version 7) is a structure topology text file
+ divided in several sections designed to be parsed easily using simple Fortran
+ code. Each section contains particular topology information, such as atom
+ name, charge, mass, angles, dihedrals, etc.
+ meaning: edam:format_3881
+ title: AMBER top
+ edam:format_3882:
+ text: edam:format_3882
+ description: 'X-Plor Protein Structure Files (PSF) are structure topology
+ files used by NAMD and CHARMM molecular simulations programs. PSF files
+ contain six main sections of interest: atoms, bonds, angles, dihedrals,
+ improper dihedrals (force terms used to maintain planarity) and cross-terms.'
+ meaning: edam:format_3882
+ title: PSF
+ edam:format_3883:
+ text: edam:format_3883
+ description: GROMACS itp files (include topology) contain structure topology
+ information, and are typically included in GROMACS topology files (GROMACS
+ top). Itp files are used to define individual (or multiple) components of
+ a topology as a separate file. This is particularly useful if there is a
+ molecule that is used frequently, and also reduces the size of the system
+ topology file, splitting it in different parts.
+ meaning: edam:format_3883
+ title: GROMACS itp
+ edam:format_3884:
+ text: edam:format_3884
+ description: Format of force field parameter files, which store the set of
+ parameters (charges, masses, radii, bond lengths, bond dihedrals, etc.)
+ that are essential for the proper description and simulation of a molecular
+ system.
+ meaning: edam:format_3884
+ title: FF parameter format
+ edam:format_3885:
+ text: edam:format_3885
+ description: Scripps Research Institute BinPos format is a binary formatted
+ file to store atom coordinates.
+ meaning: edam:format_3885
+ title: BinPos
+ edam:format_3886:
+ text: edam:format_3886
+ description: AMBER coordinate/restart file with 6 coordinates per line and
+ decimal format F12.7 (fixed point notation with field width 12 and 7 decimal
+ places).
+ meaning: edam:format_3886
+ title: RST
+ edam:format_3887:
+ text: edam:format_3887
+ description: Format of CHARMM Residue Topology Files (RTF), which define groups
+ by including the atoms, the properties of the group, and bond and charge
+ information.
+ meaning: edam:format_3887
+ title: CHARMM rtf
+ edam:format_3888:
+ text: edam:format_3888
+ description: AMBER frcmod (Force field Modification) is a file format to store
+ any modification to the standard force field needed for a particular molecule
+ to be properly represented in the simulation.
+ meaning: edam:format_3888
+ title: AMBER frcmod
+ edam:format_3889:
+ text: edam:format_3889
+ description: AMBER Object File Format library files (OFF library files) store
+ residue libraries (forcefield residue parameters).
+ meaning: edam:format_3889
+ title: AMBER off
+ edam:format_3906:
+ text: edam:format_3906
+ description: 'MReData is a text based data standard for processed NMR data.
+ It is relying on SDF molecule data and allows to store assignments of NMR
+ peaks to molecule features. The NMR-extracted data (or "NMReDATA") includes:
+ Chemical shift,scalar coupling, 2D correlation, assignment, etc.'
+ meaning: edam:format_3906
+ title: NMReDATA
+ edam:format_3909:
+ text: edam:format_3909
+ description: BpForms is a string format for concretely representing the primary
+ structures of biopolymers, including DNA, RNA, and proteins that include
+ non-canonical nucleic and amino acids. See https://www.bpforms.org for more
+ information.
+ meaning: edam:format_3909
+ title: BpForms
+ edam:format_3910:
+ text: edam:format_3910
+ description: Format of trr files that contain the trajectory of a simulation
+ experiment used by GROMACS.
+ meaning: edam:format_3910
+ title: trr
+ edam:format_3911:
+ text: edam:format_3911
+ description: Mash sketch is a format for sequence / sequence checksum information.
+ To make a sketch, each k-mer in a sequence is hashed, which creates a pseudo-random
+ identifier. By sorting these hashes, a small subset from the top of the
+ sorted list can represent the entire sequence.
+ meaning: edam:format_3911
+ title: msh
+ edam:format_3913:
+ text: edam:format_3913
+ description: The Loom file format is based on HDF5, a standard for storing
+ large numerical datasets. The Loom format is designed to efficiently hold
+ large omics datasets. Typically, such data takes the form of a large matrix
+ of numbers, along with metadata for the rows and columns.
+ meaning: edam:format_3913
+ title: Loom
+ edam:format_3915:
+ text: edam:format_3915
+ description: The Zarr format is an implementation of chunked, compressed,
+ N-dimensional arrays for storing data.
+ meaning: edam:format_3915
+ title: Zarr
+ edam:format_3916:
+ text: edam:format_3916
+ description: The Matrix Market matrix (MTX) format stores numerical or pattern
+ matrices in a dense (array format) or sparse (coordinate format) representation.
+ meaning: edam:format_3916
+ title: MTX
+ edam:format_3951:
+ text: edam:format_3951
+ description: BcForms is a format for abstractly describing the molecular structure
+ (atoms and bonds) of macromolecular complexes as a collection of subunits
+ and crosslinks. Each subunit can be described with BpForms (http://edamontology.org/format_3909)
+ or SMILES (http://edamontology.org/data_2301). BcForms uses an ontology
+ of crosslinks to abstract the chemical details of crosslinks from the descriptions
+ of complexes (see https://bpforms.org/crosslink.html).
+ meaning: edam:format_3951
+ title: BcForms
+ edam:format_3956:
+ text: edam:format_3956
+ description: N-Quads is a line-based, plain text format for encoding an RDF
+ dataset. It includes information about the graph each triple belongs to.
+ meaning: edam:format_3956
+ title: N-Quads
+ edam:format_3969:
+ text: edam:format_3969
+ description: Vega is a visualization grammar, a declarative language for creating,
+ saving, and sharing interactive visualization designs. With Vega, you can
+ describe the visual appearance and interactive behavior of a visualization
+ in a JSON format, and generate web-based views using Canvas or SVG.
+ meaning: edam:format_3969
+ title: Vega
+ edam:format_3970:
+ text: edam:format_3970
+ description: Vega-Lite is a high-level grammar of interactive graphics. It
+ provides a concise JSON syntax for rapidly generating visualizations to
+ support analysis. Vega-Lite specifications can be compiled to Vega specifications.
+ meaning: edam:format_3970
+ title: Vega-lite
+ edam:format_3971:
+ text: edam:format_3971
+ description: A model description language for computational neuroscience.
+ meaning: edam:format_3971
+ title: NeuroML
+ edam:format_3972:
+ text: edam:format_3972
+ description: BioNetGen is a format for the specification and simulation of
+ rule-based models of biochemical systems, including signal transduction,
+ metabolic, and genetic regulatory networks.
+ meaning: edam:format_3972
+ title: BNGL
+ edam:format_3973:
+ text: edam:format_3973
+ description: A Docker image is a file, comprised of multiple layers, that
+ is used to execute code in a Docker container. An image is essentially built
+ from the instructions for a complete and executable version of an application,
+ which relies on the host OS kernel.
+ meaning: edam:format_3973
+ title: Docker image
+ edam:format_3975:
+ text: edam:format_3975
+ description: Graphical Fragment Assembly captures sequence graphs as the product
+ of an assembly, a representation of variation in genomes, splice graphs
+ in genes, or even overlap between reads from long-read sequencing technology.
+ meaning: edam:format_3975
+ title: GFA 1
+ edam:format_3976:
+ text: edam:format_3976
+ description: Graphical Fragment Assembly captures sequence graphs as the product
+ of an assembly, a representation of variation in genomes, splice graphs
+ in genes, or even overlap between reads from long-read sequencing technology.
+ GFA2 is an update of GFA1 which is not compatible with GFA1.
+ meaning: edam:format_3976
+ title: GFA 2
+ edam:format_3977:
+ text: edam:format_3977
+ description: ObjTables is a toolkit for creating reusable datasets that are
+ both human and machine-readable, combining the ease of spreadsheets (e.g.,
+ Excel workbooks) with the rigor of schemas (classes, their attributes, the
+ type of each attribute, and the possible relationships between instances
+ of classes). ObjTables consists of a format for describing schemas for spreadsheets,
+ numerous data types for science, a syntax for indicating the class and attribute
+ represented by each table and column in a workbook, and software for using
+ schemas to rigorously validate, merge, split, compare, and revision datasets.
+ meaning: edam:format_3977
+ title: ObjTables
+ edam:format_3978:
+ text: edam:format_3978
+ description: The CONTIG format used for output of the SOAPdenovo alignment
+ program. It contains contig sequences generated without using mate pair
+ information.
+ meaning: edam:format_3978
+ title: CONTIG
+ edam:format_3979:
+ text: edam:format_3979
+ description: WEGO native format used by the Web Gene Ontology Annotation Plot
+ application. Tab-delimited format with gene names and others GO IDs (columns)
+ with one annotation record per line.
+ meaning: edam:format_3979
+ title: WEGO
+ edam:format_3980:
+ text: edam:format_3980
+ description: Tab-delimited format for gene expression levels table, calculated
+ as Reads Per Kilobase per Million (RPKM) mapped reads.
+ meaning: edam:format_3980
+ title: RPKM
+ edam:format_3981:
+ text: edam:format_3981
+ description: TAR archive file format generated by the Unix-based utility tar.
+ meaning: edam:format_3981
+ title: TAR format
+ edam:format_3982:
+ text: edam:format_3982
+ description: The CHAIN format describes a pairwise alignment that allow gaps
+ in both sequences simultaneously and is used by the UCSC Genome Browser.
+ meaning: edam:format_3982
+ title: CHAIN
+ edam:format_3983:
+ text: edam:format_3983
+ description: The NET file format is used to describe the data that underlie
+ the net alignment annotations in the UCSC Genome Browser.
+ meaning: edam:format_3983
+ title: NET
+ edam:format_3984:
+ text: edam:format_3984
+ description: Format of QMAP files generated for methylation data from an internal
+ BGI pipeline.
+ meaning: edam:format_3984
+ title: QMAP
+ edam:format_3985:
+ text: edam:format_3985
+ description: An emerging format for high-level Galaxy workflow description.
+ meaning: edam:format_3985
+ title: gxformat2
+ edam:format_3986:
+ text: edam:format_3986
+ description: The proprietary native video format of various Microsoft programs
+ such as Windows Media Player.
+ meaning: edam:format_3986
+ title: WMV
+ edam:format_3987:
+ text: edam:format_3987
+ description: ZIP is an archive file format that supports lossless data compression.
+ meaning: edam:format_3987
+ title: ZIP format
+ edam:format_3988:
+ text: edam:format_3988
+ description: Zeiss' proprietary image format based on TIFF.
+ meaning: edam:format_3988
+ title: LSM
+ edam:format_3989:
+ text: edam:format_3989
+ description: GNU zip compressed file format common to Unix-based operating
+ systems.
+ meaning: edam:format_3989
+ title: GZIP format
+ edam:format_3990:
+ text: edam:format_3990
+ description: Audio Video Interleaved (AVI) format is a multimedia container
+ format for AVI files, that allows synchronous audio-with-video playback.
+ meaning: edam:format_3990
+ title: AVI
+ edam:format_3991:
+ text: edam:format_3991
+ description: A declaration file format for UCSC browsers track dataset display
+ characteristics.
+ meaning: edam:format_3991
+ title: TrackDB
+ edam:format_3992:
+ text: edam:format_3992
+ description: Compact Idiosyncratic Gapped Alignment Report format is a compressed
+ (run-length encoded) pairwise alignment format. It is useful for representing
+ long (e.g. genomic) pairwise alignments.
+ meaning: edam:format_3992
+ title: CIGAR format
+ edam:format_3993:
+ text: edam:format_3993
+ description: STL is a file format native to the stereolithography CAD software
+ created by 3D Systems. The format is used to save and share surface-rendered
+ 3D images and also for 3D printing.
+ meaning: edam:format_3993
+ title: Stereolithography format
+ edam:format_3994:
+ text: edam:format_3994
+ description: U3D (Universal 3D) is a compressed file format and data structure
+ for 3D computer graphics. It contains 3D model information such as triangle
+ meshes, lighting, shading, motion data, lines and points with color and
+ structure.
+ meaning: edam:format_3994
+ title: U3D
+ edam:format_3995:
+ text: edam:format_3995
+ description: Bitmap image format used for storing textures.
+ meaning: edam:format_3995
+ title: Texture file format
+ edam:format_3996:
+ text: edam:format_3996
+ description: Format for scripts writtenin Python - a widely used high-level
+ programming language for general-purpose programming.
+ meaning: edam:format_3996
+ title: Python script
+ edam:format_3997:
+ text: edam:format_3997
+ description: A digital multimedia container format most commonly used to store
+ video and audio.
+ meaning: edam:format_3997
+ title: MPEG-4
+ edam:format_3998:
+ text: edam:format_3998
+ description: Format for scripts written in Perl - a family of high-level,
+ general-purpose, interpreted, dynamic programming languages.
+ meaning: edam:format_3998
+ title: Perl script
+ edam:format_3999:
+ text: edam:format_3999
+ description: Format for scripts written in the R language - an open source
+ programming language and software environment for statistical computing
+ and graphics that is supported by the R Foundation for Statistical Computing.
+ meaning: edam:format_3999
+ title: R script
+ edam:format_4000:
+ text: edam:format_4000
+ description: A file format for making dynamic documents (R Markdown scripts)
+ with the R language.
+ meaning: edam:format_4000
+ title: R markdown
+ edam:format_4002:
+ text: edam:format_4002
+ description: Format used by Python pickle module for serializing and de-serializing
+ a Python object structure.
+ meaning: edam:format_4002
+ title: pickle
+ edam:format_4003:
+ text: edam:format_4003
+ description: The standard binary file format used by NumPy - a fundamental
+ package for scientific computing with Python - for persisting a single arbitrary
+ NumPy array on disk. The format stores all of the shape and dtype information
+ necessary to reconstruct the array correctly.
+ meaning: edam:format_4003
+ title: NumPy format
+ edam:format_4004:
+ text: edam:format_4004
+ description: Format of repertoire (archive) files that can be read by SimToolbox
+ (a MATLAB toolbox for structured illumination fluorescence microscopy) or
+ alternatively extracted with zip file archiver software.
+ meaning: edam:format_4004
+ title: SimTools repertoire file format
+ edam:format_4005:
+ text: edam:format_4005
+ description: A configuration file used by various programs to store settings
+ that are specific to their respective software.
+ meaning: edam:format_4005
+ title: Configuration file format
+ edam:format_4006:
+ text: edam:format_4006
+ description: Format used by the Zstandard real-time compression algorithm.
+ meaning: edam:format_4006
+ title: Zstandard format
+ edam:format_4007:
+ text: edam:format_4007
+ description: The file format for MATLAB scripts or functions.
+ meaning: edam:format_4007
+ title: MATLAB script
+ edam:format_4015:
+ text: edam:format_4015
+ description: A data format for specifying parameter estimation problems in
+ systems biology.
+ meaning: edam:format_4015
+ title: PEtab
+ edam:format_4018:
+ text: edam:format_4018
+ description: Genomic Variant Call Format (gVCF) is a version of VCF that includes
+ not only the positions that are variant when compared to a reference genome,
+ but also the non-variant positions as ranges, including metrics of confidence
+ that the positions in the range are actually non-variant e.g. minimum read-depth
+ and genotype quality.
+ meaning: edam:format_4018
+ title: gVCF
+ edam:format_4023:
+ text: edam:format_4023
+ description: Chemical Markup Language (CML) is an XML-based format for encoding
+ detailed information about a wide range of chemical concepts.
+ meaning: edam:format_4023
+ title: cml
+ edam:format_4024:
+ text: edam:format_4024
+ description: Crystallographic Information File (CIF) is a data exchange standard
+ file format for Crystallographic Information and related Structural Science
+ data.
+ meaning: edam:format_4024
+ title: cif
+ edam:format_4025:
+ text: edam:format_4025
+ description: Format for describing the capabilities of a biosimulation tool
+ including the modeling frameworks, simulation algorithms, and modeling formats
+ that it supports, as well as metadata such as a list of the interfaces,
+ programming languages, and operating systems supported by the tool; a link
+ to download the tool; a list of the authors of the tool; and the license
+ to the tool.
+ meaning: edam:format_4025
+ title: BioSimulators format for the specifications of biosimulation tools
+ edam:format_4026:
+ text: edam:format_4026
+ description: Outlines the syntax and semantics of the input and output arguments
+ for command-line interfaces for biosimulation tools.
+ meaning: edam:format_4026
+ title: BioSimulators standard for command-line interfaces for biosimulation
+ tools
+ edam:format_4035:
+ text: edam:format_4035
+ description: Data format derived from the standard PDB format, which enables
+ user to incorporate parameters for charge and radius to the existing PDB
+ data file.
+ meaning: edam:format_4035
+ title: PQR
+ edam:format_4036:
+ text: edam:format_4036
+ description: Data format used in AutoDock 4 for storing atomic coordinates,
+ partial atomic charges and AutoDock atom types for both receptors and ligands.
+ meaning: edam:format_4036
+ title: PDBQT
+ edam:format_4039:
+ text: edam:format_4039
+ description: MSP is a data format for mass spectrometry data.
+ meaning: edam:format_4039
+ title: MSP
+ edam:format_4041:
+ text: edam:format_4041
+ description: maDMP stands for machine-actionable data management plan, a standard
+ for DMPs developed by the Research Data Alliance (RDA).
+ meaning: edam:format_4041
+ title: maDMP
+ edam:format_4048:
+ text: edam:format_4048
+ description: Nextflow is a workflow system for creating scalable, portable,
+ and reproducible workflows.
+ meaning: edam:format_4048
+ title: Nextflow
+ edam:format_4049:
+ text: edam:format_4049
+ description: The Snakemake workflow management system is a tool to create
+ reproducible and scalable data analyses.
+ meaning: edam:format_4049
+ title: Snakemake
+ edam:format_4050:
+ text: edam:format_4050
+ description: Sample and Data Relationship File for a proteomics experiment.
+ meaning: edam:format_4050
+ title: SDRF
+ edam:format_4058:
+ text: edam:format_4058
+ description: mzTab-M is a light-weight, tab-delimited format for mass spectrometry-based
+ chemical profiling data, including metabolomics.
+ meaning: edam:format_4058
+ title: mzTab-M
+ edam:format_4059:
+ text: edam:format_4059
+ description: mzTab-L is a light-weight, tab-delimited format for mass spectrometry-based
+ lipidomics data. It is a compatible version of mzTab-M, with additional
+ rules and information standard (reporting guidelines).
+ meaning: edam:format_4059
+ title: mzTab-L
+ edam:format_4066:
+ text: edam:format_4066
+ description: ISA-Tab Investigation file (i_Investigation.txt) contains metadata
+ describing the overall goals, means, and context of an investigation/experiment,
+ including references to associated Study and Assay files.
+ meaning: edam:format_4066
+ title: ISA-Tab Investigation file
+ edam:format_4067:
+ text: edam:format_4067
+ description: ISA-Tab Study file (s_*.txt) contains sample metadata describing
+ the subjects under study, their sources, characteristics, sampling methodology,
+ and any treatments or manipulations applied.
+ meaning: edam:format_4067
+ title: ISA-Tab Study file
+ edam:format_4068:
+ text: edam:format_4068
+ description: ISA-Tab Assay file (a_*.txt) contains assay metadata describing
+ test steps and analytical measurements performed on the sample material,
+ including measurement types, technology used, and references to raw and
+ derived data files.
+ meaning: edam:format_4068
+ title: ISA-Tab Assay file
+ edam:format_4069:
+ text: edam:format_4069
+ description: ISA-JSON stands for Investigation / Study / Assay (ISA) JavaScript
+ Object Notation (JSON) format, and it is comprised of metadata describing
+ observational or experimental scientific studies.
+ meaning: edam:format_4069
+ title: ISA-JSON
+ edam:format_4070:
+ text: edam:format_4070
+ description: mwTab is a tab-delimited text format developed by the Metabolomics
+ Workbench to facilitate programmatic processing of metabolomics data and
+ metadata suitable for submission to the repository.
+ meaning: edam:format_4070
+ title: mwTab
+ edam:format_4071:
+ text: edam:format_4071
+ description: MHD (MetabolomicsHub Common Data Model) is a JSON-based format
+ providing a standardised, FAIR-compliant data model for the exchange, discovery,
+ and reuse of metabolomics dataset metadata across international repositories.
+ meaning: edam:format_4071
+ title: MHD
+ edam:format_4072:
+ text: edam:format_4072
+ description: The MHD announcement file is a JSON-based format used to notify
+ MetabolomicsHub of new or updated dataset submissions, serving as a manifest
+ or notification file within the MHD data flow.
+ meaning: edam:format_4072
+ title: MHD announcement
+ edam:format_4073:
+ text: edam:format_4073
+ description: MetaboLights MAF (Metabolite Annotation File) is a tab-separated
+ file format used to report metabolites identified or annotated in a metabolomics
+ study, including compound identifiers, chemical structure representations,
+ mass-to-charge ratios, retention times, and per-sample quantitative measurements.
+ meaning: edam:format_4073
+ title: MetaboLights MAF
+ reachable_from:
+ source_ontology: bioregistry:edam
+ source_nodes:
+ - edam:format_1915
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: false
+ EnumEthnicity:
+ name: EnumEthnicity
+ description: Participant ethnicity, specific to Hispanic or Latino.
+ from_schema: https://includedcc.org/common-access-model/EnumEthnicity
+ permissible_values:
+ CDCREC:2135-2:
+ text: CDCREC:2135-2
+ title: Hispanic or Latino
+ aliases:
+ - hispanic_or_latino
+ CDCREC:2186-5:
+ text: CDCREC:2186-5
+ title: Not Hispanic or Latino
+ aliases:
+ - not_hispanic_or_latino
+ EnumFamilyRelation:
+ name: EnumFamilyRelation
+ description: Definitions of family relations as provided by KIN Ontology.
+ from_schema: https://includedcc.org/common-access-model/EnumFamilyRelation
+ reachable_from:
+ source_ontology: http://purl.org/ga4gh/kin.owl
+ source_nodes:
+ - KIN:KIN_001
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: true
+ EnumFamilyRole:
+ name: EnumFamilyRole
+ description: Example terms related to an individual's role in a family study.
+ from_schema: https://includedcc.org/common-access-model/EnumFamilyRole
+ permissible_values:
+ snomedct:85900004:
+ text: snomedct:85900004
+ title: Proband
+ aliases:
+ - proband
+ KIN:027:
+ text: KIN:027
+ description: A relation that indicates that a person is the biological mother
+ of another person.
+ title: isBiologicalMotherOf
+ snomedct:72705000:
+ text: snomedct:72705000
+ title: Mother
+ aliases:
+ - mother
+ EnumFamilyType:
+ name: EnumFamilyType
+ description: Enumerations describing research family type
+ from_schema: https://includedcc.org/common-access-model/EnumFamilyType
+ permissible_values:
+ CAMO:0000002:
+ text: CAMO:0000002
+ description: This family study includes at a minimum one parent and one child.
+ title: Parent(s) and Child(ren)
+ CAMO:0000003:
+ text: CAMO:0000003
+ description: This family study includes at a minimum one parent and one affected
+ child.
+ title: Duo
+ aliases:
+ - duo
+ CAMO:0000004:
+ text: CAMO:0000004
+ description: This family study includes at a minimum two parents of one affected
+ child.
+ title: Trio
+ aliases:
+ - trio
+ CAMO:0000005:
+ text: CAMO:0000005
+ description: This family study includes at a minimum two parents of one affected
+ child and at least one other child.
+ title: Trio+
+ aliases:
+ - trio_plus
+ CAMO:0000006:
+ text: CAMO:0000006
+ description: This family study includes only one or more cases.
+ title: Case Only
+ CAMO:0000007:
+ text: CAMO:0000007
+ description: This family study includes only one or more probands.
+ title: Proband Only
+ aliases:
+ - proband_only
+ CAMO:0000008:
+ text: CAMO:0000008
+ description: This family study includes only one or more controls.
+ title: Control Only
+ aliases:
+ - control_only
+ reachable_from:
+ source_ontology: camo
+ source_nodes:
+ - CAMO:0000001
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: true
+ EnumFileHashType:
+ name: EnumFileHashType
+ description: Types of file hashes supported.
+ from_schema: https://includedcc.org/common-access-model/EnumFileHashType
+ permissible_values:
+ MS:1000568:
+ text: MS:1000568
+ description: MD5 (Message-Digest algorithm 5) is a (now deprecated) cryptographic
+ hash function with a 128-bit hash value used to check the integrity of files.
+ title: MD5
+ aliases:
+ - md5
+ CAMO:0000022:
+ text: CAMO:0000022
+ description: The entity tag is a hash of the object. The ETag reflects changes
+ only to the contents of an object, not its metadata. The ETag may or may
+ not be an MD5 digest of the object data.
+ title: ETag
+ aliases:
+ - etag
+ MS:1000569:
+ text: MS:1000569
+ description: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function
+ designed by the National Security Agency (NSA). It is also used to verify
+ file integrity. Since 2011 it has been deprecated by the NIST as a U. S.
+ government standard.
+ title: SHA-1
+ aliases:
+ - sha1
+ MS:1003151:
+ text: MS:1003151
+ description: SHA-256 (member of Secure Hash Algorithm-2 family) is a cryptographic
+ hash function designed by the National Security Agency (NSA) and published
+ by the NIST as a U. S. government standard. It is also used to verify file
+ integrity.
+ title: SHA-256
+ reachable_from:
+ source_ontology: camo
+ source_nodes:
+ - MS:1000561
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: true
+ EnumLaterality:
+ name: EnumLaterality
+ description: Laterality information for the site
+ from_schema: https://includedcc.org/common-access-model/EnumLaterality
+ reachable_from:
+ source_ontology: bioregistry:hp
+ source_nodes:
+ - HP:0012831
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: false
+ EnumOrganism:
+ name: EnumOrganism
+ description: Common Organism types.
+ from_schema: https://includedcc.org/common-access-model/EnumOrganism
+ permissible_values:
+ NCBITaxon:9606:
+ text: NCBITaxon:9606
+ title: Human
+ aliases:
+ - human
+ NCBITaxon:10090:
+ text: NCBITaxon:10090
+ title: Mus musculus
+ aliases:
+ - mouse
+ - house_mouse
+ EnumParticipantLifespanStage:
+ name: EnumParticipantLifespanStage
+ description: Stages of life during which participants may be recruited. From NICHD
+ Pediatric Terminology. https://evs.nci.nih.gov/ftp1/Pediatric_Terminologies/NICHD/About.html
+ title: Participant Lifespan Stage
+ from_schema: https://includedcc.org/common-access-model/EnumParticipantLifespanStage
+ reachable_from:
+ source_ontology: bioregistry:ncit
+ source_nodes:
+ - NCIT:C89335
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: false
+ EnumPresentAbsent:
+ name: EnumPresentAbsent
+ description: Options for describing presence or absence. Derived from SNOMED CT
+ Known codes. The "Known" codes and "Not suspected" are the broadest terms and
+ suitable for general use.
+ from_schema: https://includedcc.org/common-access-model/EnumPresentAbsent
+ permissible_values:
+ snomedct:410515003:
+ text: snomedct:410515003
+ meaning: snomedct:410515003
+ title: Known present
+ snomedct:410516002:
+ text: snomedct:410516002
+ meaning: snomedct:410516002
+ title: Known absent
+ snomedct:410590009:
+ text: snomedct:410590009
+ meaning: snomedct:410590009
+ title: Known possible
+ snomedct:410591008:
+ text: snomedct:410591008
+ meaning: snomedct:410591008
+ title: Definitely present
+ snomedct:410592001:
+ text: snomedct:410592001
+ meaning: snomedct:410592001
+ title: Probably present
+ snomedct:410593006:
+ text: snomedct:410593006
+ meaning: snomedct:410593006
+ title: Probably not present
+ snomedct:410594000:
+ text: snomedct:410594000
+ meaning: snomedct:410594000
+ title: Definitely not present
+ snomedct:410605003:
+ text: snomedct:410605003
+ meaning: snomedct:410605003
+ title: Confirmed present
+ snomedct:415684004:
+ text: snomedct:415684004
+ meaning: snomedct:415684004
+ title: Suspected
+ snomedct:428263003:
+ text: snomedct:428263003
+ meaning: snomedct:428263003
+ title: Not suspected
+ snomedct:723511001:
+ text: snomedct:723511001
+ meaning: snomedct:723511001
+ title: Refuted
+ reachable_from:
+ source_ontology: bioregistry:snomedct
+ source_nodes:
+ - snomedct:36692007
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: false
+ EnumProgram:
+ name: EnumProgram
+ description: Specific funding program examples.
+ title: Funding Programs
+ from_schema: https://includedcc.org/common-access-model/EnumProgram
+ permissible_values:
+ https://www.nih.gov/include-project:
+ text: https://www.nih.gov/include-project
+ description: The INCLUDE (INvestigation of Co-occurring conditions across
+ the Lifespan to Understand Down syndromE) Project was launched in June 2018
+ in support of a Congressional directive in the fiscal year (FY) 2018 Omnibus
+ Appropriations. The directive called for a new trans-NIH research initiative
+ on critical health and quality-of-life needs for individuals with Down syndrome.
+ title: INCLUDE
+ aliases:
+ - include
+ https://commonfund.nih.gov/KidsFirst:
+ text: https://commonfund.nih.gov/KidsFirst
+ description: The goal of the Gabriella Miller Kids First Pediatric Research
+ Program (Kids First) is to help researchers uncover new insights into the
+ biology of childhood cancer and congenital anomalies, including the discovery
+ of shared genetic pathways between these disorders. Children with birth
+ defects have an increased risk of developing childhood cancer. This suggests
+ there are shared genetic pathways underlying some types of childhood cancer
+ and congenital anomalies.
+ title: Kids First
+ aliases:
+ - kf
+ EnumRace:
+ name: EnumRace
+ description: Participant Race
+ from_schema: https://includedcc.org/common-access-model/EnumRace
+ permissible_values:
+ CDCREC:1002-5:
+ text: CDCREC:1002-5
+ title: American Indian or Alaska Native
+ aliases:
+ - american_indian_or_alaska_native
+ CDCREC:2028-9:
+ text: CDCREC:2028-9
+ title: Asian
+ aliases:
+ - asian
+ CDCREC:2054-5:
+ text: CDCREC:2054-5
+ title: Black or African American
+ aliases:
+ - black_or_african_american
+ CDCREC:2076-8:
+ text: CDCREC:2076-8
+ title: Native Hawaiian or Other Pacific Islander
+ aliases:
+ - native_hawaiian_or_other_pacific_islander
+ CDCREC:2106-3:
+ text: CDCREC:2106-3
+ title: White
+ aliases:
+ - white
+ CDCREC:2118-8:
+ text: CDCREC:2118-8
+ title: Middle Eastern or North African
+ aliases:
+ - middle_eastern_or_north_african
+ EnumResearchDomain:
+ name: EnumResearchDomain
+ description: Domains of research activities.
+ title: Research Domain
+ from_schema: https://includedcc.org/common-access-model/EnumResearchDomain
+ permissible_values:
+ mesh:D001520:
+ text: mesh:D001520
+ title: Behavior and Behavior Mechanisms
+ aliases:
+ - behavior_and_behavior_mechanisms
+ mesh:D006330:
+ text: mesh:D006330
+ title: Congenital Heart Defects
+ aliases:
+ - congenital_heart_defects
+ mesh:D007154:
+ text: mesh:D007154
+ title: Immune System Diseases
+ aliases:
+ - immune_system_diseases
+ mesh:D006402:
+ text: mesh:D006402
+ title: Hematologic Diseases
+ aliases:
+ - hematologic_diseases
+ mesh:D065886:
+ text: mesh:D065886
+ title: Neurodevelopment
+ aliases:
+ - neurodevelopment
+ mesh:D012893:
+ text: mesh:D012893
+ title: Sleep Wake Disorders
+ aliases:
+ - sleep_wake_disorders
+ mesh:D013568:
+ text: mesh:D013568
+ title: All Co-occurring Conditions
+ aliases:
+ - all_co_occurring_conditions
+ mesh:D010809:
+ text: mesh:D010809
+ title: Physical Fitness
+ aliases:
+ - physical_fitness
+ EnumSampleCollectionMethod:
+ name: EnumSampleCollectionMethod
+ description: The approach used to collect the biospecimen.
+ from_schema: https://includedcc.org/common-access-model/EnumSampleCollectionMethod
+ reachable_from:
+ source_ontology: bioregistry:snomedct
+ source_nodes:
+ - snomedct:17636008
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: false
+ EnumSex:
+ name: EnumSex
+ description: Subject Sex
+ from_schema: https://includedcc.org/common-access-model/EnumSex
+ permissible_values:
+ snomedct:248152002:
+ text: snomedct:248152002
+ title: Female
+ aliases:
+ - female
+ snomedct:248153007:
+ text: snomedct:248153007
+ title: Male
+ aliases:
+ - male
+ EnumSite:
+ name: EnumSite
+ description: The location of the specimen collection.
+ from_schema: https://includedcc.org/common-access-model/EnumSite
+ reachable_from:
+ source_ontology: bioregistry:snomedct
+ source_nodes:
+ - snomedct:442083009
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: false
+ EnumSpatialQualifiers:
+ name: EnumSpatialQualifiers
+ description: Any spatial/location qualifiers.
+ from_schema: https://includedcc.org/common-access-model/EnumSpatialQualifiers
+ enum_uri: http://hl7.org/fhir/us/mcode/ValueSet/mcode-body-location-qualifier-vs
+ permissible_values:
+ snomedct:103339001:
+ text: snomedct:103339001
+ meaning: snomedct:103339001
+ title: Long axis
+ snomedct:103340004:
+ text: snomedct:103340004
+ meaning: snomedct:103340004
+ title: Short axis
+ snomedct:103341000:
+ text: snomedct:103341000
+ meaning: snomedct:103341000
+ title: Off axis
+ snomedct:103342007:
+ text: snomedct:103342007
+ meaning: snomedct:103342007
+ title: Mid-longitudinal
+ snomedct:103343002:
+ text: snomedct:103343002
+ meaning: snomedct:103343002
+ title: Parasagittal
+ snomedct:103344008:
+ text: snomedct:103344008
+ meaning: snomedct:103344008
+ title: Transvesical
+ snomedct:103345009:
+ text: snomedct:103345009
+ meaning: snomedct:103345009
+ title: Transthecal
+ snomedct:103346005:
+ text: snomedct:103346005
+ meaning: snomedct:103346005
+ title: Transsplenic
+ snomedct:103347001:
+ text: snomedct:103347001
+ meaning: snomedct:103347001
+ title: Transrenal
+ snomedct:103348006:
+ text: snomedct:103348006
+ meaning: snomedct:103348006
+ title: Transpleural
+ snomedct:103349003:
+ text: snomedct:103349003
+ meaning: snomedct:103349003
+ title: Transpancreatic
+ snomedct:103353001:
+ text: snomedct:103353001
+ meaning: snomedct:103353001
+ title: Transgastric
+ snomedct:103354007:
+ text: snomedct:103354007
+ meaning: snomedct:103354007
+ title: Transmural
+ snomedct:11070000:
+ text: snomedct:11070000
+ meaning: snomedct:11070000
+ title: Capsular
+ snomedct:1146002:
+ text: snomedct:1146002
+ meaning: snomedct:1146002
+ title: Arcuate
+ snomedct:11896004:
+ text: snomedct:11896004
+ meaning: snomedct:11896004
+ title: Intermediate
+ snomedct:1217011006:
+ text: snomedct:1217011006
+ meaning: snomedct:1217011006
+ title: Non-adjacent
+ snomedct:131183008:
+ text: snomedct:131183008
+ meaning: snomedct:131183008
+ title: Intra-articular
+ snomedct:131184002:
+ text: snomedct:131184002
+ meaning: snomedct:131184002
+ title: Area of defined region
+ snomedct:131185001:
+ text: snomedct:131185001
+ meaning: snomedct:131185001
+ title: Vertical long axis
+ snomedct:131186000:
+ text: snomedct:131186000
+ meaning: snomedct:131186000
+ title: Horizontal long axis
+ snomedct:131187009:
+ text: snomedct:131187009
+ meaning: snomedct:131187009
+ title: Major Axis
+ snomedct:131188004:
+ text: snomedct:131188004
+ meaning: snomedct:131188004
+ title: Minor Axis
+ snomedct:131189007:
+ text: snomedct:131189007
+ meaning: snomedct:131189007
+ title: Perpendicular axis
+ snomedct:131190003:
+ text: snomedct:131190003
+ meaning: snomedct:131190003
+ title: Radius
+ snomedct:131191004:
+ text: snomedct:131191004
+ meaning: snomedct:131191004
+ title: Perimeter
+ snomedct:14414005:
+ text: snomedct:14414005
+ meaning: snomedct:14414005
+ title: Peripheral
+ snomedct:1483009:
+ text: snomedct:1483009
+ meaning: snomedct:1483009
+ title: Angular
+ snomedct:18769003:
+ text: snomedct:18769003
+ meaning: snomedct:18769003
+ title: Juxta-posed
+ snomedct:21006006:
+ text: snomedct:21006006
+ meaning: snomedct:21006006
+ title: Hemispheric
+ snomedct:21481007:
+ text: snomedct:21481007
+ meaning: snomedct:21481007
+ title: Over
+ snomedct:24020000:
+ text: snomedct:24020000
+ meaning: snomedct:24020000
+ title: Horizontal
+ snomedct:24028007:
+ text: snomedct:24028007
+ meaning: snomedct:24028007
+ title: Right
+ snomedct:24422004:
+ text: snomedct:24422004
+ meaning: snomedct:24422004
+ title: Axial
+ snomedct:255527003:
+ text: snomedct:255527003
+ meaning: snomedct:255527003
+ title: Horizontal - 3 and 9
+ snomedct:255528008:
+ text: snomedct:255528008
+ meaning: snomedct:255528008
+ title: Horizontal and vertical
+ snomedct:261129000:
+ text: snomedct:261129000
+ meaning: snomedct:261129000
+ title: Mediolateral
+ snomedct:26216008:
+ text: snomedct:26216008
+ meaning: snomedct:26216008
+ title: Central
+ snomedct:26283006:
+ text: snomedct:26283006
+ meaning: snomedct:26283006
+ title: Superficial
+ snomedct:263687007:
+ text: snomedct:263687007
+ meaning: snomedct:263687007
+ title: Bony extra-articular
+ snomedct:263688002:
+ text: snomedct:263688002
+ meaning: snomedct:263688002
+ title: Bony intra-articular
+ snomedct:264731004:
+ text: snomedct:264731004
+ meaning: snomedct:264731004
+ title: Lateral to the left
+ snomedct:264732006:
+ text: snomedct:264732006
+ meaning: snomedct:264732006
+ title: Lateral to the right
+ snomedct:264733001:
+ text: snomedct:264733001
+ meaning: snomedct:264733001
+ title: Linear longitudinal
+ snomedct:264737000:
+ text: snomedct:264737000
+ meaning: snomedct:264737000
+ title: Linear transverse
+ snomedct:264741001:
+ text: snomedct:264741001
+ meaning: snomedct:264741001
+ title: Posterolateral to the left
+ snomedct:264742008:
+ text: snomedct:264742008
+ meaning: snomedct:264742008
+ title: Posterolateral to the right
+ snomedct:264839005:
+ text: snomedct:264839005
+ meaning: snomedct:264839005
+ title: Horizontal cleavage
+ snomedct:27237009:
+ text: snomedct:27237009
+ meaning: snomedct:27237009
+ title: Triangular
+ snomedct:28241006:
+ text: snomedct:28241006
+ meaning: snomedct:28241006
+ title: Rhomboid
+ snomedct:28947002:
+ text: snomedct:28947002
+ meaning: snomedct:28947002
+ title: Right curve
+ snomedct:30730003:
+ text: snomedct:30730003
+ meaning: snomedct:30730003
+ title: Sagittal
+ snomedct:30899007:
+ text: snomedct:30899007
+ meaning: snomedct:30899007
+ title: Quadrangular
+ snomedct:32381004:
+ text: snomedct:32381004
+ meaning: snomedct:32381004
+ title: Portal
+ snomedct:32400000:
+ text: snomedct:32400000
+ meaning: snomedct:32400000
+ title: Preaxial
+ snomedct:33096000:
+ text: snomedct:33096000
+ meaning: snomedct:33096000
+ title: Vertical
+ snomedct:33843005:
+ text: snomedct:33843005
+ meaning: snomedct:33843005
+ title: Efferent
+ snomedct:350722008:
+ text: snomedct:350722008
+ meaning: snomedct:350722008
+ title: Behind
+ snomedct:351726001:
+ text: snomedct:351726001
+ meaning: snomedct:351726001
+ title: Below
+ snomedct:352730000:
+ text: snomedct:352730000
+ meaning: snomedct:352730000
+ title: Supra-
+ snomedct:353734004:
+ text: snomedct:353734004
+ meaning: snomedct:353734004
+ title: Upward
+ snomedct:354652004:
+ text: snomedct:354652004
+ meaning: snomedct:354652004
+ title: Circular
+ snomedct:355648006:
+ text: snomedct:355648006
+ meaning: snomedct:355648006
+ title: Surrounding
+ snomedct:37197008:
+ text: snomedct:37197008
+ meaning: snomedct:37197008
+ title: Anterolateral
+ snomedct:38717003:
+ text: snomedct:38717003
+ meaning: snomedct:38717003
+ title: Longitudinal
+ snomedct:39187007:
+ text: snomedct:39187007
+ meaning: snomedct:39187007
+ title: Bent
+ snomedct:40415009:
+ text: snomedct:40415009
+ meaning: snomedct:40415009
+ title: Proximal
+ snomedct:410674003:
+ text: snomedct:410674003
+ meaning: snomedct:410674003
+ title: Regional
+ snomedct:410679008:
+ text: snomedct:410679008
+ meaning: snomedct:410679008
+ title: Surface
+ snomedct:42798000:
+ text: snomedct:42798000
+ meaning: snomedct:42798000
+ title: Area
+ snomedct:43674008:
+ text: snomedct:43674008
+ meaning: snomedct:43674008
+ title: Apical
+ snomedct:45226003:
+ text: snomedct:45226003
+ meaning: snomedct:45226003
+ title: Cylindrical
+ snomedct:46053002:
+ text: snomedct:46053002
+ meaning: snomedct:46053002
+ title: Distal
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+ meaning: snomedct:47021000
+ title: Left curve
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+ meaning: snomedct:49370004
+ title: Lateral
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+ meaning: snomedct:49530007
+ title: Afferent
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+ meaning: snomedct:50009006
+ title: Linear
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+ text: snomedct:50362007
+ meaning: snomedct:50362007
+ title: Stellate
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+ text: snomedct:50974003
+ meaning: snomedct:50974003
+ title: Junctional
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+ text: snomedct:51440002
+ meaning: snomedct:51440002
+ title: Right and left
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+ text: snomedct:5686001
+ meaning: snomedct:5686001
+ title: Remote
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+ text: snomedct:56924007
+ meaning: snomedct:56924007
+ title: Square
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+ text: snomedct:57183005
+ meaning: snomedct:57183005
+ title: Along edge
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+ meaning: snomedct:57195005
+ title: Basal
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+ text: snomedct:59410002
+ meaning: snomedct:59410002
+ title: Rectangular
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+ text: snomedct:60301000
+ meaning: snomedct:60301000
+ title: Curved
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+ text: snomedct:60583000
+ meaning: snomedct:60583000
+ title: Postaxial
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+ text: snomedct:61397002
+ meaning: snomedct:61397002
+ title: Subcapsular
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+ text: snomedct:62083003
+ meaning: snomedct:62083003
+ title: Sectional
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+ text: snomedct:62372003
+ meaning: snomedct:62372003
+ title: Segmental
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+ text: snomedct:62824007
+ meaning: snomedct:62824007
+ title: Transverse
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+ meaning: snomedct:66787007
+ title: Cephalic
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+ text: snomedct:68493006
+ meaning: snomedct:68493006
+ title: Gutter
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+ text: snomedct:69320009
+ meaning: snomedct:69320009
+ title: Extracellular
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+ text: snomedct:69389007
+ meaning: snomedct:69389007
+ title: Saccular
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+ text: snomedct:710097009
+ meaning: snomedct:710097009
+ title: Incisal
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+ text: snomedct:710098004
+ meaning: snomedct:710098004
+ title: Occlusal
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+ text: snomedct:710099007
+ meaning: snomedct:710099007
+ title: Mesial
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+ text: snomedct:7771000
+ meaning: snomedct:7771000
+ title: Left
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+ text: snomedct:795002
+ meaning: snomedct:795002
+ title: Deep
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+ text: snomedct:81654009
+ meaning: snomedct:81654009
+ title: Coronal
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+ text: snomedct:83167003
+ meaning: snomedct:83167003
+ title: Intracellular
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+ text: snomedct:84177009
+ meaning: snomedct:84177009
+ title: Straddling
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+ text: snomedct:87687004
+ meaning: snomedct:87687004
+ title: Extra-articular
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+ text: snomedct:90069004
+ meaning: snomedct:90069004
+ title: Posterolateral
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+ text: snomedct:112233002
+ meaning: snomedct:112233002
+ title: Marginal
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+ text: snomedct:1197041002
+ meaning: snomedct:1197041002
+ title: Intercostal
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+ text: snomedct:1285325005
+ meaning: snomedct:1285325005
+ title: Intralobular
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+ text: snomedct:128590009
+ meaning: snomedct:128590009
+ title: Anatomical reference point of right atrium
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+ text: snomedct:1362012009
+ meaning: snomedct:1362012009
+ title: Inlet projection
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+ text: snomedct:1363295008
+ meaning: snomedct:1363295008
+ title: Unilobar
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+ text: snomedct:1363296009
+ meaning: snomedct:1363296009
+ title: Ipsilateral multilobar
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+ text: snomedct:182353008
+ meaning: snomedct:182353008
+ title: Side
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+ text: snomedct:225780003
+ meaning: snomedct:225780003
+ title: Sublingual
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+ text: snomedct:229801003
+ meaning: snomedct:229801003
+ title: Intra-arterial
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+ text: snomedct:255208005
+ meaning: snomedct:255208005
+ title: Ipsilateral
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+ text: snomedct:255209002
+ meaning: snomedct:255209002
+ title: Contralateral
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+ text: snomedct:255348000
+ meaning: snomedct:255348000
+ title: Inframammary
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+ text: snomedct:255472009
+ meaning: snomedct:255472009
+ title: Panretinal
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+ text: snomedct:255482005
+ meaning: snomedct:255482005
+ title: Left upper segment
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+ text: snomedct:255486008
+ meaning: snomedct:255486008
+ title: Lower segment
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+ text: snomedct:255496004
+ meaning: snomedct:255496004
+ title: Right lower segment
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+ text: snomedct:255499006
+ meaning: snomedct:255499006
+ title: Right upper segment
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+ text: snomedct:255501003
+ meaning: snomedct:255501003
+ title: Upper segment
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+ text: snomedct:255546002
+ meaning: snomedct:255546002
+ title: Underlay
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+ text: snomedct:255547006
+ meaning: snomedct:255547006
+ title: Overlay
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+ text: snomedct:255548001
+ meaning: snomedct:255548001
+ title: Sandwich graft
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+ meaning: snomedct:255549009
+ title: Anterior
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+ text: snomedct:255550009
+ meaning: snomedct:255550009
+ title: Anterior to epiglottis
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+ text: snomedct:255551008
+ meaning: snomedct:255551008
+ title: Posterior
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+ meaning: snomedct:255552001
+ title: Posterior to epiglottis
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+ meaning: snomedct:255554000
+ title: Dorsal
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+ text: snomedct:255557007
+ meaning: snomedct:255557007
+ title: Intracerebral
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+ text: snomedct:255558002
+ meaning: snomedct:255558002
+ title: Intragastric
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+ text: snomedct:255559005
+ meaning: snomedct:255559005
+ title: Intramuscular
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+ text: snomedct:255560000
+ meaning: snomedct:255560000
+ title: Intravenous
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+ text: snomedct:255561001
+ meaning: snomedct:255561001
+ title: Medial
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+ text: snomedct:255562008
+ meaning: snomedct:255562008
+ title: Mid
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+ meaning: snomedct:255563003
+ title: Mid-zone
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+ text: snomedct:255564009
+ meaning: snomedct:255564009
+ title: Perivascular
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+ text: snomedct:255565005
+ meaning: snomedct:255565005
+ title: Peripapillary
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+ meaning: snomedct:255567002
+ title: Postauricular
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+ text: snomedct:255568007
+ meaning: snomedct:255568007
+ title: Retrosternal
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+ meaning: snomedct:255569004
+ title: Suprasternal
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+ text: snomedct:255579002
+ meaning: snomedct:255579002
+ title: Palatal-lingual
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+ meaning: snomedct:255584008
+ title: Septal
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+ text: snomedct:255690001
+ meaning: snomedct:255690001
+ title: Drug in contact with skin
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+ text: snomedct:258186003
+ meaning: snomedct:258186003
+ title: Via collaterals
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+ text: snomedct:258187007
+ meaning: snomedct:258187007
+ title: Via native vessel - graft impaired
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+ text: snomedct:258188002
+ meaning: snomedct:258188002
+ title: Via native vessel - graft occluded
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+ text: snomedct:258189005
+ meaning: snomedct:258189005
+ title: Via skip graft
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+ text: snomedct:258329003
+ meaning: snomedct:258329003
+ title: Supratentorial
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+ text: snomedct:258330008
+ meaning: snomedct:258330008
+ title: Infratentorial
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+ text: snomedct:260240005
+ meaning: snomedct:260240005
+ title: Interdental
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+ text: snomedct:260318004
+ meaning: snomedct:260318004
+ title: 1 o'clock position
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+ text: snomedct:260319007
+ meaning: snomedct:260319007
+ title: 1.30 o'clock position
+ snomedct:260322009:
+ text: snomedct:260322009
+ meaning: snomedct:260322009
+ title: 10 o'clock position
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+ text: snomedct:260323004
+ meaning: snomedct:260323004
+ title: 10.30 o'clock position
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+ text: snomedct:260324005
+ meaning: snomedct:260324005
+ title: 11 o'clock position
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+ text: snomedct:260325006
+ meaning: snomedct:260325006
+ title: 11.30 o'clock position
+ snomedct:260326007:
+ text: snomedct:260326007
+ meaning: snomedct:260326007
+ title: 12 o'clock position
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+ text: snomedct:260327003
+ meaning: snomedct:260327003
+ title: 12.30 o'clock position
+ snomedct:260328008:
+ text: snomedct:260328008
+ meaning: snomedct:260328008
+ title: 2 o'clock position
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+ text: snomedct:260329000
+ meaning: snomedct:260329000
+ title: 2.30 o'clock position
+ snomedct:260330005:
+ text: snomedct:260330005
+ meaning: snomedct:260330005
+ title: 3 o'clock position
+ snomedct:260331009:
+ text: snomedct:260331009
+ meaning: snomedct:260331009
+ title: 3.30 o'clock position
+ snomedct:260333007:
+ text: snomedct:260333007
+ meaning: snomedct:260333007
+ title: 4 o'clock position
+ snomedct:260334001:
+ text: snomedct:260334001
+ meaning: snomedct:260334001
+ title: 4.30 o'clock position
+ snomedct:260335000:
+ text: snomedct:260335000
+ meaning: snomedct:260335000
+ title: 5 o'clock position
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+ text: snomedct:260336004
+ meaning: snomedct:260336004
+ title: 5.30 o'clock position
+ snomedct:260337008:
+ text: snomedct:260337008
+ meaning: snomedct:260337008
+ title: 6 o'clock position
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+ text: snomedct:260338003
+ meaning: snomedct:260338003
+ title: 6.30 o'clock position
+ snomedct:260339006:
+ text: snomedct:260339006
+ meaning: snomedct:260339006
+ title: 7 o'clock position
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+ text: snomedct:260340008
+ meaning: snomedct:260340008
+ title: 7.30 o'clock position
+ snomedct:260341007:
+ text: snomedct:260341007
+ meaning: snomedct:260341007
+ title: 8 o'clock position
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+ text: snomedct:260342000
+ meaning: snomedct:260342000
+ title: 8.30 o'clock position
+ snomedct:260343005:
+ text: snomedct:260343005
+ meaning: snomedct:260343005
+ title: 9 o'clock position
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+ text: snomedct:260344004
+ meaning: snomedct:260344004
+ title: 9.30 o'clock position
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+ text: snomedct:260419006
+ meaning: snomedct:260419006
+ title: Projection
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+ text: snomedct:260421001
+ meaning: snomedct:260421001
+ title: Left lateral oblique
+ snomedct:260422008:
+ text: snomedct:260422008
+ meaning: snomedct:260422008
+ title: C1-C2 left oblique
+ snomedct:260424009:
+ text: snomedct:260424009
+ meaning: snomedct:260424009
+ title: Right lateral oblique
+ snomedct:260425005:
+ text: snomedct:260425005
+ meaning: snomedct:260425005
+ title: C1-C2 right oblique
+ snomedct:260426006:
+ text: snomedct:260426006
+ meaning: snomedct:260426006
+ title: Medial oblique
+ snomedct:260427002:
+ text: snomedct:260427002
+ meaning: snomedct:260427002
+ title: Oblique lateral
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+ text: snomedct:260428007
+ meaning: snomedct:260428007
+ title: Mandible X-ray - lateral oblique
+ snomedct:260430009:
+ text: snomedct:260430009
+ meaning: snomedct:260430009
+ title: Anteroposterior left lateral decubitus
+ snomedct:260431008:
+ text: snomedct:260431008
+ meaning: snomedct:260431008
+ title: C1-C2 left lateral
+ snomedct:260432001:
+ text: snomedct:260432001
+ meaning: snomedct:260432001
+ title: Left true lateral
+ snomedct:260434000:
+ text: snomedct:260434000
+ meaning: snomedct:260434000
+ title: Anteroposterior right lateral decubitus
+ snomedct:260435004:
+ text: snomedct:260435004
+ meaning: snomedct:260435004
+ title: C1-C2 right lateral
+ snomedct:260436003:
+ text: snomedct:260436003
+ meaning: snomedct:260436003
+ title: Right true lateral
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+ text: snomedct:260437007
+ meaning: snomedct:260437007
+ title: Lateral vertical beam
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+ text: snomedct:260438002
+ meaning: snomedct:260438002
+ title: Lateral horizontal beam
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+ text: snomedct:260439005
+ meaning: snomedct:260439005
+ title: Lateral inverted
+ snomedct:260440007:
+ text: snomedct:260440007
+ meaning: snomedct:260440007
+ title: True lateral of mandible
+ snomedct:260441006:
+ text: snomedct:260441006
+ meaning: snomedct:260441006
+ title: Frog lateral
+ snomedct:260442004:
+ text: snomedct:260442004
+ meaning: snomedct:260442004
+ title: Erect lateral
+ snomedct:260443009:
+ text: snomedct:260443009
+ meaning: snomedct:260443009
+ title: Anteroposterior inverted
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+ text: snomedct:260444003
+ meaning: snomedct:260444003
+ title: Rotated posteroanterior
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+ text: snomedct:260445002
+ meaning: snomedct:260445002
+ title: Posteroanterior 20 degree
+ snomedct:260446001:
+ text: snomedct:260446001
+ meaning: snomedct:260446001
+ title: Posteroanterior in ulnar deviation
+ snomedct:260447005:
+ text: snomedct:260447005
+ meaning: snomedct:260447005
+ title: Penetrated posteroanterior
+ snomedct:260450008:
+ text: snomedct:260450008
+ meaning: snomedct:260450008
+ title: Lordotic projection
+ snomedct:260451007:
+ text: snomedct:260451007
+ meaning: snomedct:260451007
+ title: Supine decubitus
+ snomedct:260452000:
+ text: snomedct:260452000
+ meaning: snomedct:260452000
+ title: Decubitus
+ snomedct:260453005:
+ text: snomedct:260453005
+ meaning: snomedct:260453005
+ title: Internal/external rotation
+ snomedct:260454004:
+ text: snomedct:260454004
+ meaning: snomedct:260454004
+ title: 45 degree projection
+ snomedct:260455003:
+ text: snomedct:260455003
+ meaning: snomedct:260455003
+ title: Head and neck projection
+ snomedct:260458001:
+ text: snomedct:260458001
+ meaning: snomedct:260458001
+ title: Slit Towne's
+ snomedct:260459009:
+ text: snomedct:260459009
+ meaning: snomedct:260459009
+ title: Reverse Towne's
+ snomedct:260460004:
+ text: snomedct:260460004
+ meaning: snomedct:260460004
+ title: Slit 35 degree fronto-occipital
+ snomedct:260461000:
+ text: snomedct:260461000
+ meaning: snomedct:260461000
+ title: Vertex projection
+ snomedct:260463002:
+ text: snomedct:260463002
+ meaning: snomedct:260463002
+ title: Left Stenver's
+ snomedct:260464008:
+ text: snomedct:260464008
+ meaning: snomedct:260464008
+ title: Right Stenver's
+ snomedct:260465009:
+ text: snomedct:260465009
+ meaning: snomedct:260465009
+ title: Occipitofrontal projection
+ snomedct:260466005:
+ text: snomedct:260466005
+ meaning: snomedct:260466005
+ title: Occipitomental projection
+ snomedct:260467001:
+ text: snomedct:260467001
+ meaning: snomedct:260467001
+ title: Occipitomental - erect
+ snomedct:260468006:
+ text: snomedct:260468006
+ meaning: snomedct:260468006
+ title: Occipitomental - tilted
+ snomedct:260469003:
+ text: snomedct:260469003
+ meaning: snomedct:260469003
+ title: Occipitomental - prone
+ snomedct:260470002:
+ text: snomedct:260470002
+ meaning: snomedct:260470002
+ title: Occipitomental - 15 degree
+ snomedct:260471003:
+ text: snomedct:260471003
+ meaning: snomedct:260471003
+ title: Occipitomental - 30 degree
+ snomedct:260472005:
+ text: snomedct:260472005
+ meaning: snomedct:260472005
+ title: Occipitomental - 45 degree
+ snomedct:260473000:
+ text: snomedct:260473000
+ meaning: snomedct:260473000
+ title: Waters - 35 degree tilt to radiographic baseline
+ snomedct:260475007:
+ text: snomedct:260475007
+ meaning: snomedct:260475007
+ title: Submentovertical reduced exposure for zygomatic arches
+ snomedct:260476008:
+ text: snomedct:260476008
+ meaning: snomedct:260476008
+ title: Slit submentovertical
+ snomedct:260477004:
+ text: snomedct:260477004
+ meaning: snomedct:260477004
+ title: Dental/oral projection
+ snomedct:260478009:
+ text: snomedct:260478009
+ meaning: snomedct:260478009
+ title: Body - molar
+ snomedct:260479001:
+ text: snomedct:260479001
+ meaning: snomedct:260479001
+ title: Body - premolar
+ snomedct:260481004:
+ text: snomedct:260481004
+ meaning: snomedct:260481004
+ title: Ramus projection
+ snomedct:260482006:
+ text: snomedct:260482006
+ meaning: snomedct:260482006
+ title: Bimolar projection
+ snomedct:260483001:
+ text: snomedct:260483001
+ meaning: snomedct:260483001
+ title: Transpharyngeal projection
+ snomedct:260484007:
+ text: snomedct:260484007
+ meaning: snomedct:260484007
+ title: Transmaxillary projection
+ snomedct:260485008:
+ text: snomedct:260485008
+ meaning: snomedct:260485008
+ title: Temporomandibular joint setting
+ snomedct:260486009:
+ text: snomedct:260486009
+ meaning: snomedct:260486009
+ title: Maxillary sinus setting
+ snomedct:260487000:
+ text: snomedct:260487000
+ meaning: snomedct:260487000
+ title: Dental panoramic
+ snomedct:260489002:
+ text: snomedct:260489002
+ meaning: snomedct:260489002
+ title: Implant setting projection
+ snomedct:260490006:
+ text: snomedct:260490006
+ meaning: snomedct:260490006
+ title: Segmental setting
+ snomedct:260491005:
+ text: snomedct:260491005
+ meaning: snomedct:260491005
+ title: Axial view for sesamoid bones
+ snomedct:260492003:
+ text: snomedct:260492003
+ meaning: snomedct:260492003
+ title: Brewerton's projection
+ snomedct:260493008:
+ text: snomedct:260493008
+ meaning: snomedct:260493008
+ title: Harris Beath axial projection
+ snomedct:260494002:
+ text: snomedct:260494002
+ meaning: snomedct:260494002
+ title: Intercondylar projection
+ snomedct:260496000:
+ text: snomedct:260496000
+ meaning: snomedct:260496000
+ title: Judet projection
+ snomedct:260497009:
+ text: snomedct:260497009
+ meaning: snomedct:260497009
+ title: Mortice projection
+ snomedct:260499007:
+ text: snomedct:260499007
+ meaning: snomedct:260499007
+ title: Occlusal projection
+ snomedct:260500003:
+ text: snomedct:260500003
+ meaning: snomedct:260500003
+ title: Projected oblique occlusal
+ snomedct:260501004:
+ text: snomedct:260501004
+ meaning: snomedct:260501004
+ title: Lower true occlusal
+ snomedct:260502006:
+ text: snomedct:260502006
+ meaning: snomedct:260502006
+ title: Power grip series
+ snomedct:260503001:
+ text: snomedct:260503001
+ meaning: snomedct:260503001
+ title: Radial head projection
+ snomedct:260504007:
+ text: snomedct:260504007
+ meaning: snomedct:260504007
+ title: Skyline projection
+ snomedct:260506009:
+ text: snomedct:260506009
+ meaning: snomedct:260506009
+ title: Van Rosen projection
+ snomedct:260514003:
+ text: snomedct:260514003
+ meaning: snomedct:260514003
+ title: Via body reference line
+ snomedct:260520002:
+ text: snomedct:260520002
+ meaning: snomedct:260520002
+ title: Extracorporeal
+ snomedct:260521003:
+ text: snomedct:260521003
+ meaning: snomedct:260521003
+ title: Internal
+ snomedct:260528009:
+ text: snomedct:260528009
+ meaning: snomedct:260528009
+ title: Median
+ snomedct:260529001:
+ text: snomedct:260529001
+ meaning: snomedct:260529001
+ title: Vectors
+ snomedct:260530006:
+ text: snomedct:260530006
+ meaning: snomedct:260530006
+ title: Via body region
+ snomedct:260532003:
+ text: snomedct:260532003
+ meaning: snomedct:260532003
+ title: Thoracoabdominal
+ snomedct:260535001:
+ text: snomedct:260535001
+ meaning: snomedct:260535001
+ title: Lateral extrapleural
+ snomedct:260541008:
+ text: snomedct:260541008
+ meaning: snomedct:260541008
+ title: Nasopancreatic
+ snomedct:260544000:
+ text: snomedct:260544000
+ meaning: snomedct:260544000
+ title: Endobronchial
+ snomedct:260549005:
+ text: snomedct:260549005
+ meaning: snomedct:260549005
+ title: Orogastric
+ snomedct:260568008:
+ text: snomedct:260568008
+ meaning: snomedct:260568008
+ title: Via cardiovascular system
+ snomedct:260602004:
+ text: snomedct:260602004
+ meaning: snomedct:260602004
+ title: Via superficialized vessel (qualifier value)
+ snomedct:260620008:
+ text: snomedct:260620008
+ meaning: snomedct:260620008
+ title: Postaural approach
+ snomedct:260637001:
+ text: snomedct:260637001
+ meaning: snomedct:260637001
+ title: Sublabial transseptal
+ snomedct:260641002:
+ text: snomedct:260641002
+ meaning: snomedct:260641002
+ title: Extraperitoneal
+ snomedct:260642009:
+ text: snomedct:260642009
+ meaning: snomedct:260642009
+ title: Retroperitoneal
+ snomedct:260668002:
+ text: snomedct:260668002
+ meaning: snomedct:260668002
+ title: Venovenous
+ snomedct:261045000:
+ text: snomedct:261045000
+ meaning: snomedct:261045000
+ title: Anterior dorsal
+ snomedct:261052003:
+ text: snomedct:261052003
+ meaning: snomedct:261052003
+ title: Aortocoronary
+ snomedct:261054002:
+ text: snomedct:261054002
+ meaning: snomedct:261054002
+ title: Arterio-arterial
+ snomedct:261055001:
+ text: snomedct:261055001
+ meaning: snomedct:261055001
+ title: Arteriovenous
+ snomedct:261057009:
+ text: snomedct:261057009
+ meaning: snomedct:261057009
+ title: Between intestinal loops
+ snomedct:261059007:
+ text: snomedct:261059007
+ meaning: snomedct:261059007
+ title: Bicoronal
+ snomedct:261065007:
+ text: snomedct:261065007
+ meaning: snomedct:261065007
+ title: Circumareolar
+ snomedct:261067004:
+ text: snomedct:261067004
+ meaning: snomedct:261067004
+ title: Dorsal part
+ snomedct:261073003:
+ text: snomedct:261073003
+ meaning: snomedct:261073003
+ title: Epicardial
+ snomedct:261074009:
+ text: snomedct:261074009
+ meaning: snomedct:261074009
+ title: External
+ snomedct:261075005:
+ text: snomedct:261075005
+ meaning: snomedct:261075005
+ title: Extra-amniotic
+ snomedct:261076006:
+ text: snomedct:261076006
+ meaning: snomedct:261076006
+ title: Extracoronal
+ snomedct:261089000:
+ text: snomedct:261089000
+ meaning: snomedct:261089000
+ title: Inferior
+ snomedct:261094000:
+ text: snomedct:261094000
+ meaning: snomedct:261094000
+ title: Into urinary bladder
+ snomedct:261095004:
+ text: snomedct:261095004
+ meaning: snomedct:261095004
+ title: Into ureter
+ snomedct:261097007:
+ text: snomedct:261097007
+ meaning: snomedct:261097007
+ title: Intracoronal
+ snomedct:261100002:
+ text: snomedct:261100002
+ meaning: snomedct:261100002
+ title: Intraperitoneal
+ snomedct:261101003:
+ text: snomedct:261101003
+ meaning: snomedct:261101003
+ title: Intravascular
+ snomedct:261117009:
+ text: snomedct:261117009
+ meaning: snomedct:261117009
+ title: Laryngotracheal
+ snomedct:261119007:
+ text: snomedct:261119007
+ meaning: snomedct:261119007
+ title: Lateral part
+ snomedct:261122009:
+ text: snomedct:261122009
+ meaning: snomedct:261122009
+ title: Lower
+ snomedct:261123004:
+ text: snomedct:261123004
+ meaning: snomedct:261123004
+ title: Lower anterior
+ snomedct:261128008:
+ text: snomedct:261128008
+ meaning: snomedct:261128008
+ title: Medial part
+ snomedct:261131009:
+ text: snomedct:261131009
+ meaning: snomedct:261131009
+ title: Midaxillary
+ snomedct:261132002:
+ text: snomedct:261132002
+ meaning: snomedct:261132002
+ title: Midclavicular
+ snomedct:261133007:
+ text: snomedct:261133007
+ meaning: snomedct:261133007
+ title: Middle third
+ snomedct:261136004:
+ text: snomedct:261136004
+ meaning: snomedct:261136004
+ title: Mural
+ snomedct:261137008:
+ text: snomedct:261137008
+ meaning: snomedct:261137008
+ title: Musculocutaneous
+ snomedct:261146002:
+ text: snomedct:261146002
+ meaning: snomedct:261146002
+ title: Para-aortic
+ snomedct:261147006:
+ text: snomedct:261147006
+ meaning: snomedct:261147006
+ title: Paracolic
+ snomedct:261148001:
+ text: snomedct:261148001
+ meaning: snomedct:261148001
+ title: Paraspinal
+ snomedct:261149009:
+ text: snomedct:261149009
+ meaning: snomedct:261149009
+ title: Parasternal
+ snomedct:261154000:
+ text: snomedct:261154000
+ meaning: snomedct:261154000
+ title: Penis and urinary bladder neck
+ snomedct:261156003:
+ text: snomedct:261156003
+ meaning: snomedct:261156003
+ title: Periadrenal
+ snomedct:261165005:
+ text: snomedct:261165005
+ meaning: snomedct:261165005
+ title: Posterior dorsal
+ snomedct:261172006:
+ text: snomedct:261172006
+ meaning: snomedct:261172006
+ title: Proximal third
+ snomedct:261174007:
+ text: snomedct:261174007
+ meaning: snomedct:261174007
+ title: Retrocecal (qualifier value)
+ snomedct:261175008:
+ text: snomedct:261175008
+ meaning: snomedct:261175008
+ title: Retroduodenal
+ snomedct:261181000:
+ text: snomedct:261181000
+ meaning: snomedct:261181000
+ title: Tracheobronchial
+ snomedct:261183002:
+ text: snomedct:261183002
+ meaning: snomedct:261183002
+ title: Upper
+ snomedct:261184008:
+ text: snomedct:261184008
+ meaning: snomedct:261184008
+ title: Upper anterior
+ snomedct:261185009:
+ text: snomedct:261185009
+ meaning: snomedct:261185009
+ title: Venoarterial
+ snomedct:261186005:
+ text: snomedct:261186005
+ meaning: snomedct:261186005
+ title: Ventral part
+ snomedct:261411001:
+ text: snomedct:261411001
+ meaning: snomedct:261411001
+ title: Distal third
+ snomedct:261446009:
+ text: snomedct:261446009
+ meaning: snomedct:261446009
+ title: Transpulmonary annulus
+ snomedct:261466000:
+ text: snomedct:261466000
+ meaning: snomedct:261466000
+ title: Via intrapulmonary trunk tunnel
+ snomedct:261469007:
+ text: snomedct:261469007
+ meaning: snomedct:261469007
+ title: Via orbitotomy
+ snomedct:261760007:
+ text: snomedct:261760007
+ meaning: snomedct:261760007
+ title: Deep to rectus abdominis
+ snomedct:261788001:
+ text: snomedct:261788001
+ meaning: snomedct:261788001
+ title: Exteriorized (qualifier value)
+ snomedct:261799004:
+ text: snomedct:261799004
+ meaning: snomedct:261799004
+ title: From existing graft to coronary artery
+ snomedct:261847009:
+ text: snomedct:261847009
+ meaning: snomedct:261847009
+ title: Intracervical
+ snomedct:261851006:
+ text: snomedct:261851006
+ meaning: snomedct:261851006
+ title: Internally to bladder
+ snomedct:261945002:
+ text: snomedct:261945002
+ meaning: snomedct:261945002
+ title: Mixed venoarterial and venovenous
+ snomedct:261964008:
+ text: snomedct:261964008
+ meaning: snomedct:261964008
+ title: Muscle fibers only (qualifier value)
+ snomedct:261980003:
+ text: snomedct:261980003
+ meaning: snomedct:261980003
+ title: Neuromuscular junction only
+ snomedct:262379005:
+ text: snomedct:262379005
+ meaning: snomedct:262379005
+ title: Dominant side
+ snomedct:262458006:
+ text: snomedct:262458006
+ meaning: snomedct:262458006
+ title: Non-dominant side
+ snomedct:263672002:
+ text: snomedct:263672002
+ meaning: snomedct:263672002
+ title: Anocutaneous
+ snomedct:263674001:
+ text: snomedct:263674001
+ meaning: snomedct:263674001
+ title: Anovestibular
+ snomedct:263759007:
+ text: snomedct:263759007
+ meaning: snomedct:263759007
+ title: Foraminal
+ snomedct:263794000:
+ text: snomedct:263794000
+ meaning: snomedct:263794000
+ title: Left side-by-side
+ snomedct:263795004:
+ text: snomedct:263795004
+ meaning: snomedct:263795004
+ title: Left sided
+ snomedct:263830001:
+ text: snomedct:263830001
+ meaning: snomedct:263830001
+ title: Panacinar
+ snomedct:263831002:
+ text: snomedct:263831002
+ meaning: snomedct:263831002
+ title: Panlobular
+ snomedct:263838008:
+ text: snomedct:263838008
+ meaning: snomedct:263838008
+ title: Periacinar
+ snomedct:263846009:
+ text: snomedct:263846009
+ meaning: snomedct:263846009
+ title: Prevascular
+ snomedct:263848005:
+ text: snomedct:263848005
+ meaning: snomedct:263848005
+ title: Proximal acinar
+ snomedct:263869007:
+ text: snomedct:263869007
+ meaning: snomedct:263869007
+ title: Separate
+ snomedct:263887005:
+ text: snomedct:263887005
+ meaning: snomedct:263887005
+ title: Subcutaneous
+ snomedct:263938007:
+ text: snomedct:263938007
+ meaning: snomedct:263938007
+ title: Above middle turbinate
+ snomedct:263942005:
+ text: snomedct:263942005
+ meaning: snomedct:263942005
+ title: Anterior segment
+ snomedct:263943000:
+ text: snomedct:263943000
+ meaning: snomedct:263943000
+ title: Anterior wall
+ snomedct:263952009:
+ text: snomedct:263952009
+ meaning: snomedct:263952009
+ title: Periorbital
+ snomedct:263953004:
+ text: snomedct:263953004
+ meaning: snomedct:263953004
+ title: Perioral
+ snomedct:263955006:
+ text: snomedct:263955006
+ meaning: snomedct:263955006
+ title: Atlantoaxial
+ snomedct:263958008:
+ text: snomedct:263958008
+ meaning: snomedct:263958008
+ title: Between left common carotid and brachiocephalic arteries
+ snomedct:263959000:
+ text: snomedct:263959000
+ meaning: snomedct:263959000
+ title: Between left subclavian and common carotid arteries
+ snomedct:263965000:
+ text: snomedct:263965000
+ meaning: snomedct:263965000
+ title: Bronchocutaneous
+ snomedct:263966004:
+ text: snomedct:263966004
+ meaning: snomedct:263966004
+ title: Bronchopleural
+ snomedct:263969006:
+ text: snomedct:263969006
+ meaning: snomedct:263969006
+ title: Centriacinar
+ snomedct:263970007:
+ text: snomedct:263970007
+ meaning: snomedct:263970007
+ title: Centrilobular
+ snomedct:263974003:
+ text: snomedct:263974003
+ meaning: snomedct:263974003
+ title: Cervicothoracic
+ snomedct:263975002:
+ text: snomedct:263975002
+ meaning: snomedct:263975002
+ title: Cervicothoracolumbar
+ snomedct:263981005:
+ text: snomedct:263981005
+ meaning: snomedct:263981005
+ title: Distal to left subclavian artery
+ snomedct:263990003:
+ text: snomedct:263990003
+ meaning: snomedct:263990003
+ title: Duodenoduodenal
+ snomedct:263991004:
+ text: snomedct:263991004
+ meaning: snomedct:263991004
+ title: Duodenojejunal
+ snomedct:263996009:
+ text: snomedct:263996009
+ meaning: snomedct:263996009
+ title: Extrafoveal
+ snomedct:263997000:
+ text: snomedct:263997000
+ meaning: snomedct:263997000
+ title: Extraureteric
+ snomedct:263998005:
+ text: snomedct:263998005
+ meaning: snomedct:263998005
+ title: Extravaginal
+ snomedct:263999002:
+ text: snomedct:263999002
+ meaning: snomedct:263999002
+ title: From anterosuperior-superior bridging leaflet commissure
+ snomedct:264000000:
+ text: snomedct:264000000
+ meaning: snomedct:264000000
+ title: From left inferior bridging leaflet-lateral commissure
+ snomedct:264001001:
+ text: snomedct:264001001
+ meaning: snomedct:264001001
+ title: From left septal commissure
+ snomedct:264002008:
+ text: snomedct:264002008
+ meaning: snomedct:264002008
+ title: From left superior bridging leaflet-lateral commissure
+ snomedct:264004009:
+ text: snomedct:264004009
+ meaning: snomedct:264004009
+ title: From left ventricular component
+ snomedct:264005005:
+ text: snomedct:264005005
+ meaning: snomedct:264005005
+ title: From right anterosuperior-inferior commissure
+ snomedct:264006006:
+ text: snomedct:264006006
+ meaning: snomedct:264006006
+ title: From right inferior bridging leaflet-inferior commissure
+ snomedct:264007002:
+ text: snomedct:264007002
+ meaning: snomedct:264007002
+ title: From right septal commissure
+ snomedct:264008007:
+ text: snomedct:264008007
+ meaning: snomedct:264008007
+ title: From right ventricular component
+ snomedct:264011008:
+ text: snomedct:264011008
+ meaning: snomedct:264011008
+ title: Gastroduodenal
+ snomedct:264012001:
+ text: snomedct:264012001
+ meaning: snomedct:264012001
+ title: Gastrogastric
+ snomedct:264015004:
+ text: snomedct:264015004
+ meaning: snomedct:264015004
+ title: Hepatopleural
+ snomedct:264023002:
+ text: snomedct:264023002
+ meaning: snomedct:264023002
+ title: Ileocecal (qualifier value)
+ snomedct:264024008:
+ text: snomedct:264024008
+ meaning: snomedct:264024008
+ title: Ileocolic
+ snomedct:264025009:
+ text: snomedct:264025009
+ meaning: snomedct:264025009
+ title: Iliofemoral vein zone
+ snomedct:264026005:
+ text: snomedct:264026005
+ meaning: snomedct:264026005
+ title: Ileo-ileal
+ snomedct:264027001:
+ text: snomedct:264027001
+ meaning: snomedct:264027001
+ title: Ileorectal
+ snomedct:264030008:
+ text: snomedct:264030008
+ meaning: snomedct:264030008
+ title: In joint
+ snomedct:264031007:
+ text: snomedct:264031007
+ meaning: snomedct:264031007
+ title: In situ
+ snomedct:264034004:
+ text: snomedct:264034004
+ meaning: snomedct:264034004
+ title: Infracardiac
+ snomedct:264035003:
+ text: snomedct:264035003
+ meaning: snomedct:264035003
+ title: Infravesical
+ snomedct:264040006:
+ text: snomedct:264040006
+ meaning: snomedct:264040006
+ title: Interchordal
+ snomedct:264041005:
+ text: snomedct:264041005
+ meaning: snomedct:264041005
+ title: Interdigital
+ snomedct:264042003:
+ text: snomedct:264042003
+ meaning: snomedct:264042003
+ title: Intervertebral
+ snomedct:264043008:
+ text: snomedct:264043008
+ meaning: snomedct:264043008
+ title: Intraligamentous
+ snomedct:264044002:
+ text: snomedct:264044002
+ meaning: snomedct:264044002
+ title: Intracardiac
+ snomedct:264045001:
+ text: snomedct:264045001
+ meaning: snomedct:264045001
+ title: Intraluminal
+ snomedct:264046000:
+ text: snomedct:264046000
+ meaning: snomedct:264046000
+ title: Intramammary
+ snomedct:264047009:
+ text: snomedct:264047009
+ meaning: snomedct:264047009
+ title: Intrapulmonary
+ snomedct:264049007:
+ text: snomedct:264049007
+ meaning: snomedct:264049007
+ title: Intravaginal
+ snomedct:264056001:
+ text: snomedct:264056001
+ meaning: snomedct:264056001
+ title: Lateral column
+ snomedct:264060003:
+ text: snomedct:264060003
+ meaning: snomedct:264060003
+ title: Lateral segment
+ snomedct:264065008:
+ text: snomedct:264065008
+ meaning: snomedct:264065008
+ title: Left anterior
+ snomedct:264067000:
+ text: snomedct:264067000
+ meaning: snomedct:264067000
+ title: Left lateral wall
+ snomedct:264068005:
+ text: snomedct:264068005
+ meaning: snomedct:264068005
+ title: Left lower segment
+ snomedct:264076007:
+ text: snomedct:264076007
+ meaning: snomedct:264076007
+ title: Lower left parasternal
+ snomedct:264081003:
+ text: snomedct:264081003
+ meaning: snomedct:264081003
+ title: Lower third
+ snomedct:264083000:
+ text: snomedct:264083000
+ meaning: snomedct:264083000
+ title: Lumbosacral
+ snomedct:264096004:
+ text: snomedct:264096004
+ meaning: snomedct:264096004
+ title: Medial segment
+ snomedct:264103001:
+ text: snomedct:264103001
+ meaning: snomedct:264103001
+ title: Midtarsal
+ snomedct:264107000:
+ text: snomedct:264107000
+ meaning: snomedct:264107000
+ title: Paravertebral
+ snomedct:264110007:
+ text: snomedct:264110007
+ meaning: snomedct:264110007
+ title: Esophagocolonic (qualifier value)
+ snomedct:264111006:
+ text: snomedct:264111006
+ meaning: snomedct:264111006
+ title: Esophagogastric (qualifier value)
+ snomedct:264112004:
+ text: snomedct:264112004
+ meaning: snomedct:264112004
+ title: Esophagojejunal (qualifier value)
+ snomedct:264114003:
+ text: snomedct:264114003
+ meaning: snomedct:264114003
+ title: Ostium
+ snomedct:264117005:
+ text: snomedct:264117005
+ meaning: snomedct:264117005
+ title: Paraesophageal (qualifier value)
+ snomedct:264118000:
+ text: snomedct:264118000
+ meaning: snomedct:264118000
+ title: Paraduodenal
+ snomedct:264119008:
+ text: snomedct:264119008
+ meaning: snomedct:264119008
+ title: Parafoveal
+ snomedct:264121003:
+ text: snomedct:264121003
+ meaning: snomedct:264121003
+ title: Paramacular
+ snomedct:264123000:
+ text: snomedct:264123000
+ meaning: snomedct:264123000
+ title: Paraseptal
+ snomedct:264124006:
+ text: snomedct:264124006
+ meaning: snomedct:264124006
+ title: Paraumbilical
+ snomedct:264126008:
+ text: snomedct:264126008
+ meaning: snomedct:264126008
+ title: Paravascular
+ snomedct:264127004:
+ text: snomedct:264127004
+ meaning: snomedct:264127004
+ title: Paraovarian
+ snomedct:264128009:
+ text: snomedct:264128009
+ meaning: snomedct:264128009
+ title: Paratracheal
+ snomedct:264131005:
+ text: snomedct:264131005
+ meaning: snomedct:264131005
+ title: Peri-intestinal
+ snomedct:264133008:
+ text: snomedct:264133008
+ meaning: snomedct:264133008
+ title: Perianal
+ snomedct:264136000:
+ text: snomedct:264136000
+ meaning: snomedct:264136000
+ title: Perihepatic
+ snomedct:264137009:
+ text: snomedct:264137009
+ meaning: snomedct:264137009
+ title: Perinephric
+ snomedct:264139007:
+ text: snomedct:264139007
+ meaning: snomedct:264139007
+ title: Peripancreatic
+ snomedct:264142001:
+ text: snomedct:264142001
+ meaning: snomedct:264142001
+ title: Perisplenic
+ snomedct:264153007:
+ text: snomedct:264153007
+ meaning: snomedct:264153007
+ title: Posterior pole
+ snomedct:264154001:
+ text: snomedct:264154001
+ meaning: snomedct:264154001
+ title: Posterior segment
+ snomedct:264159006:
+ text: snomedct:264159006
+ meaning: snomedct:264159006
+ title: Posterior wall
+ snomedct:264168008:
+ text: snomedct:264168008
+ meaning: snomedct:264168008
+ title: Rectocloacal
+ snomedct:264169000:
+ text: snomedct:264169000
+ meaning: snomedct:264169000
+ title: Rectocutaneous
+ snomedct:264170004:
+ text: snomedct:264170004
+ meaning: snomedct:264170004
+ title: Rectourethral
+ snomedct:264171000:
+ text: snomedct:264171000
+ meaning: snomedct:264171000
+ title: Rectovaginal
+ snomedct:264172007:
+ text: snomedct:264172007
+ meaning: snomedct:264172007
+ title: Rectovesical
+ snomedct:264173002:
+ text: snomedct:264173002
+ meaning: snomedct:264173002
+ title: Rectovulval
+ snomedct:264174008:
+ text: snomedct:264174008
+ meaning: snomedct:264174008
+ title: Retromammary
+ snomedct:264175009:
+ text: snomedct:264175009
+ meaning: snomedct:264175009
+ title: Retrocolumellar
+ snomedct:264176005:
+ text: snomedct:264176005
+ meaning: snomedct:264176005
+ title: Right anterior
+ snomedct:264178006:
+ text: snomedct:264178006
+ meaning: snomedct:264178006
+ title: Right lateral wall
+ snomedct:264179003:
+ text: snomedct:264179003
+ meaning: snomedct:264179003
+ title: Right side-by-side
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+ title: Segment
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+ title: Subareolar
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+ title: Subconjunctival
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+ meaning: snomedct:264208000
+ title: Subcostal
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+ meaning: snomedct:264209008
+ title: Subfoveal
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+ meaning: snomedct:264216009
+ title: Superficial to rectus abdominis
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+ meaning: snomedct:264217000
+ title: Superior
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+ meaning: snomedct:264221007
+ title: Supraumbilical
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+ meaning: snomedct:264222000
+ title: Supracardiac
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+ meaning: snomedct:264224004
+ title: Supraglottic
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+ meaning: snomedct:264225003
+ title: Suprahepatic
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+ meaning: snomedct:264227006
+ title: Tarsometatarsal
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+ meaning: snomedct:264232007
+ title: Thoracolumbar
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+ meaning: snomedct:264245006
+ title: Upper left parasternal
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+ meaning: snomedct:264253003
+ title: Upper third
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+ meaning: snomedct:264261008
+ title: Cholecystoduodenal
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+ meaning: snomedct:264262001
+ title: Cholecystenteric (qualifier value)
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+ meaning: snomedct:264263006
+ title: Cholecystogastric
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+ meaning: snomedct:264264000
+ title: Choledochoduodenal
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+ meaning: snomedct:264266003
+ title: Colocolic
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+ meaning: snomedct:264267007
+ title: Colorectal
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+ meaning: snomedct:264463009
+ title: Epitrochlear
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+ meaning: snomedct:264940008
+ title: Under inferior bridging leaflet
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+ title: Under superior bridging leaflet
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+ meaning: snomedct:272288000
+ title: Onlay
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+ meaning: snomedct:272425003
+ title: General site descriptor
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+ meaning: snomedct:272427006
+ title: Anatomical part descriptor
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+ meaning: snomedct:272428001
+ title: Anatomical third
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+ meaning: snomedct:272429009
+ title: Part structure
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+ meaning: snomedct:272430004
+ title: Column structure
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+ meaning: snomedct:272431000
+ title: Segment structure
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+ meaning: snomedct:272432007
+ title: Wall structure
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+ meaning: snomedct:272434008
+ title: Anatomical relationship descriptor
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+ meaning: snomedct:272435009
+ title: Centri-location
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+ meaning: snomedct:272436005
+ title: Circum-location
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+ meaning: snomedct:272437001
+ title: Extra-location
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+ meaning: snomedct:272438006
+ title: Extrapleural
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+ meaning: snomedct:272439003
+ title: Infra-location
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+ meaning: snomedct:272440001
+ title: Inter-location
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+ meaning: snomedct:272441002
+ title: Intra-location
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+ meaning: snomedct:272442009
+ title: Mid-location
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+ meaning: snomedct:272443004
+ title: Pan-location
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+ meaning: snomedct:272444005
+ title: Para-location
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+ meaning: snomedct:272446007
+ title: Per-location
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+ meaning: snomedct:272447003
+ title: Peri-location
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+ meaning: snomedct:272448008
+ title: Post-location
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+ meaning: snomedct:272449000
+ title: Pre-location
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+ meaning: snomedct:272450000
+ title: Retro-location
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+ meaning: snomedct:272451001
+ title: Sub-location
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+ meaning: snomedct:272452008
+ title: Supra-location
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+ meaning: snomedct:272455005
+ title: Inferosuperior projection
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+ meaning: snomedct:272456006
+ title: Apical projection
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+ meaning: snomedct:272457002
+ title: Vertical projection
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+ meaning: snomedct:272458007
+ title: Prone projection
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+ meaning: snomedct:272459004
+ title: Supine projection
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+ meaning: snomedct:272460009
+ title: Anterior projection
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+ meaning: snomedct:272461008
+ title: Right posterior projection
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+ meaning: snomedct:272462001
+ title: Left posterior projection
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+ meaning: snomedct:272464000
+ title: Perorbital projection
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+ title: Temporomandibular joint projection
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+ meaning: snomedct:272466003
+ title: Optic foramen projection
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+ meaning: snomedct:272467007
+ title: Lateral facial skeleton projection
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+ meaning: snomedct:272468002
+ title: Ear projection
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+ meaning: snomedct:272469005
+ title: Mid face projection
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+ text: snomedct:272470006
+ meaning: snomedct:272470006
+ title: Cervical spine projection
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+ text: snomedct:272472003
+ meaning: snomedct:272472003
+ title: Macro projection
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+ meaning: snomedct:272473008
+ title: Outlet projection
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+ meaning: snomedct:272474002
+ title: Swimmer's projection
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+ meaning: snomedct:272475001
+ title: Tibial tuberosity projection
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+ meaning: snomedct:272476000
+ title: Transthoracic projection
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+ meaning: snomedct:272478004
+ title: Transcranial projection
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+ meaning: snomedct:272479007
+ title: Posteroanterior projection
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+ text: snomedct:272480005
+ meaning: snomedct:272480005
+ title: Horizontal projection
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+ meaning: snomedct:272481009
+ title: Erect projection
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+ text: snomedct:272482002
+ meaning: snomedct:272482002
+ title: Adduction projection
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+ meaning: snomedct:272483007
+ title: True projection
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+ meaning: snomedct:272484001
+ title: Contralateral projection
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+ meaning: snomedct:272485000
+ title: Clockface position
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+ meaning: snomedct:272486004
+ title: Trans-direction
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+ meaning: snomedct:272487008
+ title: Into-structure
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+ text: snomedct:272488003
+ meaning: snomedct:272488003
+ title: From-structure
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+ meaning: snomedct:272489006
+ title: Via values
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+ meaning: snomedct:272496008
+ title: Via incision
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+ meaning: snomedct:276749003
+ title: Epi-location
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+ meaning: snomedct:276825009
+ title: Overlapping sites
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+ meaning: snomedct:276979001
+ title: Aortoiliac
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+ text: snomedct:277292000
+ meaning: snomedct:277292000
+ title: Endo-location
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+ text: snomedct:277407002
+ meaning: snomedct:277407002
+ title: Deep locations
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+ text: snomedct:277409004
+ meaning: snomedct:277409004
+ title: Superficial locations
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+ text: snomedct:277410009
+ meaning: snomedct:277410009
+ title: Anterior locations
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+ meaning: snomedct:277411008
+ title: Posterior locations
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+ meaning: snomedct:277412001
+ title: Proximal locations
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+ meaning: snomedct:277413006
+ title: Distal locations
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+ meaning: snomedct:277414000
+ title: Between locations
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+ meaning: snomedct:277415004
+ title: Above locations
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+ meaning: snomedct:277593009
+ title: Right posterior
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+ meaning: snomedct:277594003
+ title: Left posterior
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+ text: snomedct:277681008
+ meaning: snomedct:277681008
+ title: Intrastomal
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+ text: snomedct:277685004
+ meaning: snomedct:277685004
+ title: Tubo-ovarian
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+ text: snomedct:277686003
+ meaning: snomedct:277686003
+ title: Peritubular
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+ meaning: snomedct:277806003
+ title: Sidedness
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+ meaning: snomedct:278227002
+ title: Limited structures
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+ text: snomedct:278255003
+ meaning: snomedct:278255003
+ title: Posterior projection
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+ meaning: snomedct:278267001
+ title: Abduction projection
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+ meaning: snomedct:278318001
+ title: Transorbital projection
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+ meaning: snomedct:278701003
+ title: Periumbilical
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+ meaning: snomedct:278702005
+ title: Transumbilical
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+ meaning: snomedct:285418008
+ title: Subcuticular
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+ text: snomedct:298107004
+ meaning: snomedct:298107004
+ title: Orthotopic
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+ text: snomedct:298108009
+ meaning: snomedct:298108009
+ title: Heterotopic
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+ text: snomedct:298109001
+ meaning: snomedct:298109001
+ title: Ectopic
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+ text: snomedct:303218009
+ meaning: snomedct:303218009
+ title: Subfascial
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+ text: snomedct:303231004
+ meaning: snomedct:303231004
+ title: Intracranial
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+ text: snomedct:303232006
+ meaning: snomedct:303232006
+ title: Extracranial
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+ text: snomedct:303483009
+ meaning: snomedct:303483009
+ title: Subcranial
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+ text: snomedct:304047000
+ meaning: snomedct:304047000
+ title: Transannular
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+ text: snomedct:304059001
+ meaning: snomedct:304059001
+ title: Endocardial
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+ text: snomedct:306766009
+ meaning: snomedct:306766009
+ title: Low - site descriptor
+ snomedct:306767000:
+ text: snomedct:306767000
+ meaning: snomedct:306767000
+ title: High - site descriptor
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+ text: snomedct:312206004
+ meaning: snomedct:312206004
+ title: Periapical
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+ text: snomedct:3583002
+ meaning: snomedct:3583002
+ title: Caudal
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+ text: snomedct:373863008
+ meaning: snomedct:373863008
+ title: Intracavitary
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+ text: snomedct:397406000
+ meaning: snomedct:397406000
+ title: Collateral branch of vessel
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+ text: snomedct:397421006
+ meaning: snomedct:397421006
+ title: Vessel origin
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+ text: snomedct:398236008
+ meaning: snomedct:398236008
+ title: Intrauterine
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+ text: snomedct:398994001
+ meaning: snomedct:398994001
+ title: Five chamber view
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+ text: snomedct:398996004
+ meaning: snomedct:398996004
+ title: Leonard-George projection
+ snomedct:398998003:
+ text: snomedct:398998003
+ meaning: snomedct:398998003
+ title: Right ventricular inflow tract view
+ snomedct:399000008:
+ text: snomedct:399000008
+ meaning: snomedct:399000008
+ title: Mayer projection
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+ text: snomedct:399001007
+ meaning: snomedct:399001007
+ title: Posterior emissive projection
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+ text: snomedct:399002000
+ meaning: snomedct:399002000
+ title: Nolke projection
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+ text: snomedct:399003005
+ meaning: snomedct:399003005
+ title: Hughston projection
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+ text: snomedct:399004004
+ meaning: snomedct:399004004
+ title: Oblique axial projection
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+ text: snomedct:399005003
+ meaning: snomedct:399005003
+ title: Miller projection
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+ text: snomedct:399006002
+ meaning: snomedct:399006002
+ title: Left posterior oblique projection
+ snomedct:399011000:
+ text: snomedct:399011000
+ meaning: snomedct:399011000
+ title: Axillary tail mammography view
+ snomedct:399012007:
+ text: snomedct:399012007
+ meaning: snomedct:399012007
+ title: Medial-lateral emissive projection
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+ text: snomedct:399013002
+ meaning: snomedct:399013002
+ title: Chassard-Lapin projection
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+ text: snomedct:399022001
+ meaning: snomedct:399022001
+ title: Pirie projection
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+ text: snomedct:399024000
+ meaning: snomedct:399024000
+ title: May projection
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+ text: snomedct:399025004
+ meaning: snomedct:399025004
+ title: Ischerwood projection
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+ text: snomedct:399026003
+ meaning: snomedct:399026003
+ title: Zanelli projection
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+ text: snomedct:399028002
+ meaning: snomedct:399028002
+ title: Clements projection
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+ text: snomedct:399033003
+ meaning: snomedct:399033003
+ title: Frontal projection
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+ text: snomedct:399036006
+ meaning: snomedct:399036006
+ title: Parasternal short axis view at the mitral valve level
+ snomedct:399037002:
+ text: snomedct:399037002
+ meaning: snomedct:399037002
+ title: Lewis projection
+ snomedct:399038007:
+ text: snomedct:399038007
+ meaning: snomedct:399038007
+ title: Right posterior oblique projection
+ snomedct:399043000:
+ text: snomedct:399043000
+ meaning: snomedct:399043000
+ title: Cardiac imaging views
+ snomedct:399059000:
+ text: snomedct:399059000
+ meaning: snomedct:399059000
+ title: Postero-anterior oblique projection
+ snomedct:399061009:
+ text: snomedct:399061009
+ meaning: snomedct:399061009
+ title: Axial projection
+ snomedct:399065000:
+ text: snomedct:399065000
+ meaning: snomedct:399065000
+ title: Causton projection
+ snomedct:399067008:
+ text: snomedct:399067008
+ meaning: snomedct:399067008
+ title: Lateral projection
+ snomedct:399071006:
+ text: snomedct:399071006
+ meaning: snomedct:399071006
+ title: Plantodorsal projection
+ snomedct:399073009:
+ text: snomedct:399073009
+ meaning: snomedct:399073009
+ title: Fuchs projection
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+ text: snomedct:399074003
+ meaning: snomedct:399074003
+ title: Left anterior oblique emissive projection
+ snomedct:399075002:
+ text: snomedct:399075002
+ meaning: snomedct:399075002
+ title: Right posterior oblique emissive projection
+ snomedct:399080006:
+ text: snomedct:399080006
+ meaning: snomedct:399080006
+ title: Kuchendorf projection
+ snomedct:399082003:
+ text: snomedct:399082003
+ meaning: snomedct:399082003
+ title: Gaynor-Hart projection
+ snomedct:399083008:
+ text: snomedct:399083008
+ meaning: snomedct:399083008
+ title: Hsieh projection
+ snomedct:399089007:
+ text: snomedct:399089007
+ meaning: snomedct:399089007
+ title: Oblique axial emissive projection
+ snomedct:399098005:
+ text: snomedct:399098005
+ meaning: snomedct:399098005
+ title: Staunig projection
+ snomedct:399099002:
+ text: snomedct:399099002
+ meaning: snomedct:399099002
+ title: Latero-medial oblique projection
+ snomedct:399101009:
+ text: snomedct:399101009
+ meaning: snomedct:399101009
+ title: Cranio-caudal projection exaggerated medially
+ snomedct:399103007:
+ text: snomedct:399103007
+ meaning: snomedct:399103007
+ title: Friedman projection
+ snomedct:399106004:
+ text: snomedct:399106004
+ meaning: snomedct:399106004
+ title: Suprasternal long axis view
+ snomedct:399108003:
+ text: snomedct:399108003
+ meaning: snomedct:399108003
+ title: Right anterior oblique emissive projection
+ snomedct:399110001:
+ text: snomedct:399110001
+ meaning: snomedct:399110001
+ title: Tangential projection
+ snomedct:399113004:
+ text: snomedct:399113004
+ meaning: snomedct:399113004
+ title: Eponymous projection
+ snomedct:399118008:
+ text: snomedct:399118008
+ meaning: snomedct:399118008
+ title: Left lateral emissive projection
+ snomedct:399125001:
+ text: snomedct:399125001
+ meaning: snomedct:399125001
+ title: Twining projection
+ snomedct:399127009:
+ text: snomedct:399127009
+ meaning: snomedct:399127009
+ title: Teufel projection
+ snomedct:399129007:
+ text: snomedct:399129007
+ meaning: snomedct:399129007
+ title: Holly projection
+ snomedct:399130002:
+ text: snomedct:399130002
+ meaning: snomedct:399130002
+ title: West Point projection
+ snomedct:399132005:
+ text: snomedct:399132005
+ meaning: snomedct:399132005
+ title: Frontal-oblique axial projection
+ snomedct:399135007:
+ text: snomedct:399135007
+ meaning: snomedct:399135007
+ title: Left anterior oblique projection
+ snomedct:399136008:
+ text: snomedct:399136008
+ meaning: snomedct:399136008
+ title: Left posterior oblique emissive projection
+ snomedct:399138009:
+ text: snomedct:399138009
+ meaning: snomedct:399138009
+ title: Penner projection
+ snomedct:399139001:
+ text: snomedct:399139001
+ meaning: snomedct:399139001
+ title: Parasternal long axis view
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+ meaning: snomedct:399142007
+ title: Albers-Schönberg projection
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+ text: snomedct:399145009
+ meaning: snomedct:399145009
+ title: Suprasternal short axis view
+ snomedct:399146005:
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+ meaning: snomedct:399146005
+ title: Grashey projection
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+ text: snomedct:399148006
+ meaning: snomedct:399148006
+ title: Chamberlain projection
+ snomedct:399152006:
+ text: snomedct:399152006
+ meaning: snomedct:399152006
+ title: Kandel projection
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+ meaning: snomedct:399156009
+ title: Laquerriere-Pierquin projection
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+ text: snomedct:399157000
+ meaning: snomedct:399157000
+ title: Norgaard's projection
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+ text: snomedct:399159002
+ meaning: snomedct:399159002
+ title: Latero-medial oblique emissive projection
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+ text: snomedct:399160007
+ meaning: snomedct:399160007
+ title: Frontal oblique projection
+ snomedct:399161006:
+ text: snomedct:399161006
+ meaning: snomedct:399161006
+ title: Cleavage mammography view
+ snomedct:399162004:
+ text: snomedct:399162004
+ meaning: snomedct:399162004
+ title: Cranio-caudal projection
+ snomedct:399163009:
+ text: snomedct:399163009
+ meaning: snomedct:399163009
+ title: Magnified projection
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+ text: snomedct:399168000
+ meaning: snomedct:399168000
+ title: Hough projection
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+ text: snomedct:399169008
+ meaning: snomedct:399169008
+ title: Lauenstein projection
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+ text: snomedct:399171008
+ meaning: snomedct:399171008
+ title: Ottonello projection
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+ text: snomedct:399173006
+ meaning: snomedct:399173006
+ title: Left lateral projection
+ snomedct:399179005:
+ text: snomedct:399179005
+ meaning: snomedct:399179005
+ title: Lawrence projection
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+ meaning: snomedct:399181007
+ title: Pawlow projection
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+ meaning: snomedct:399182000
+ title: Oblique projection
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+ text: snomedct:399184004
+ meaning: snomedct:399184004
+ title: Left oblique projection
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+ text: snomedct:399188001
+ meaning: snomedct:399188001
+ title: Superolateral to inferomedial oblique projection
+ snomedct:399192008:
+ text: snomedct:399192008
+ meaning: snomedct:399192008
+ title: Cranio-caudal projection exaggerated laterally
+ snomedct:399195005:
+ text: snomedct:399195005
+ meaning: snomedct:399195005
+ title: Right ventricular outflow tract view
+ snomedct:399196006:
+ text: snomedct:399196006
+ meaning: snomedct:399196006
+ title: Caudo-cranial projection
+ snomedct:399198007:
+ text: snomedct:399198007
+ meaning: snomedct:399198007
+ title: Right lateral projection
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+ text: snomedct:399199004
+ meaning: snomedct:399199004
+ title: Henschen projection
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+ text: snomedct:399200001
+ meaning: snomedct:399200001
+ title: Subcostal short axis view
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+ text: snomedct:399201002
+ meaning: snomedct:399201002
+ title: Judd projection
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+ text: snomedct:399206007
+ meaning: snomedct:399206007
+ title: Law projection
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+ text: snomedct:399212002
+ meaning: snomedct:399212002
+ title: Camp-Coventry projection
+ snomedct:399214001:
+ text: snomedct:399214001
+ meaning: snomedct:399214001
+ title: Apical four chamber view
+ snomedct:399215000:
+ text: snomedct:399215000
+ meaning: snomedct:399215000
+ title: Wigby-Taylor projection
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+ text: snomedct:399218003
+ meaning: snomedct:399218003
+ title: Arcelin projection
+ snomedct:399225005:
+ text: snomedct:399225005
+ meaning: snomedct:399225005
+ title: Oblique caudo-cranial projection
+ snomedct:399227002:
+ text: snomedct:399227002
+ meaning: snomedct:399227002
+ title: Kemp Harper projection
+ snomedct:399232001:
+ text: snomedct:399232001
+ meaning: snomedct:399232001
+ title: Apical two chamber view
+ snomedct:399234000:
+ text: snomedct:399234000
+ meaning: snomedct:399234000
+ title: Rhese projection
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+ text: snomedct:399236003
+ meaning: snomedct:399236003
+ title: Right oblique projection
+ snomedct:399237007:
+ text: snomedct:399237007
+ meaning: snomedct:399237007
+ title: Alexander projection
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+ text: snomedct:399239005
+ meaning: snomedct:399239005
+ title: Parasternal short axis view at the aortic valve level
+ snomedct:399241006:
+ text: snomedct:399241006
+ meaning: snomedct:399241006
+ title: Titterington projection
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+ text: snomedct:399242004
+ meaning: snomedct:399242004
+ title: Acanthioparietal projection
+ snomedct:399243009:
+ text: snomedct:399243009
+ meaning: snomedct:399243009
+ title: Settegast projection
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+ text: snomedct:399245002
+ meaning: snomedct:399245002
+ title: Cleaves projection
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+ text: snomedct:399246001
+ meaning: snomedct:399246001
+ title: Blackett-Healy projection
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+ text: snomedct:399247005
+ meaning: snomedct:399247005
+ title: Tarrant projection
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+ text: snomedct:399251007
+ meaning: snomedct:399251007
+ title: Lorenz projection
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+ text: snomedct:399255003
+ meaning: snomedct:399255003
+ title: Submentovertical projection
+ snomedct:399260004:
+ text: snomedct:399260004
+ meaning: snomedct:399260004
+ title: Mediolateral projection
+ snomedct:399263002:
+ text: snomedct:399263002
+ meaning: snomedct:399263002
+ title: Beclere projection
+ snomedct:399265009:
+ text: snomedct:399265009
+ meaning: snomedct:399265009
+ title: Exaggerated cranio-caudal projection
+ snomedct:399268006:
+ text: snomedct:399268006
+ meaning: snomedct:399268006
+ title: Medio-lateral oblique emissive projection
+ snomedct:399270002:
+ text: snomedct:399270002
+ meaning: snomedct:399270002
+ title: Towne's projection
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+ text: snomedct:399271003
+ meaning: snomedct:399271003
+ title: Parasternal short axis view at the papillary muscle level
+ snomedct:399272005:
+ text: snomedct:399272005
+ meaning: snomedct:399272005
+ title: Parietoacanthial projection
+ snomedct:399273000:
+ text: snomedct:399273000
+ meaning: snomedct:399273000
+ title: Sagittal-oblique axial emissive projection
+ snomedct:399277004:
+ text: snomedct:399277004
+ meaning: snomedct:399277004
+ title: Hickey projection
+ snomedct:399278009:
+ text: snomedct:399278009
+ meaning: snomedct:399278009
+ title: Cahoon projection
+ snomedct:399280003:
+ text: snomedct:399280003
+ meaning: snomedct:399280003
+ title: Kasabach projection
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+ text: snomedct:399281004
+ meaning: snomedct:399281004
+ title: Fleischner projection
+ snomedct:399284007:
+ text: snomedct:399284007
+ meaning: snomedct:399284007
+ title: Merchant projection
+ snomedct:399285008:
+ text: snomedct:399285008
+ meaning: snomedct:399285008
+ title: Holmblad projection
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+ text: snomedct:399288005
+ meaning: snomedct:399288005
+ title: Oblique cranio-caudal projection
+ snomedct:399290006:
+ text: snomedct:399290006
+ meaning: snomedct:399290006
+ title: Schüller projection
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+ text: snomedct:399292003
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+ title: Stecher projection
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+ text: snomedct:399296000
+ meaning: snomedct:399296000
+ title: Taylor projection
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+ text: snomedct:399297009
+ meaning: snomedct:399297009
+ title: Right lateral emissive projection
+ snomedct:399300004:
+ text: snomedct:399300004
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+ title: Lateral-medial emissive projection
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+ meaning: snomedct:399303002
+ title: Dunlap projection
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+ text: snomedct:399306005
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+ title: Parasternal short axis view
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+ text: snomedct:399308006
+ meaning: snomedct:399308006
+ title: Lindblom projection
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+ title: Subcostal long axis view
+ snomedct:399311007:
+ text: snomedct:399311007
+ meaning: snomedct:399311007
+ title: Grandy projection
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+ title: Antero-posterior oblique projection
+ snomedct:399313005:
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+ title: Swanson projection
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+ title: Parieto-orbital projection
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+ title: Kovacs projection
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+ text: snomedct:399320003
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+ title: Clements-Nakayama projection
+ snomedct:399321004:
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+ meaning: snomedct:399321004
+ title: Anterior emissive projection
+ snomedct:399325008:
+ text: snomedct:399325008
+ meaning: snomedct:399325008
+ title: Sagittal-oblique axial projection
+ snomedct:399327000:
+ text: snomedct:399327000
+ meaning: snomedct:399327000
+ title: Low-Beer projection
+ snomedct:399330007:
+ text: snomedct:399330007
+ meaning: snomedct:399330007
+ title: Valdini projection
+ snomedct:399332004:
+ text: snomedct:399332004
+ meaning: snomedct:399332004
+ title: Kurzbauer projection
+ snomedct:399335002:
+ text: snomedct:399335002
+ meaning: snomedct:399335002
+ title: Dorsoplantar projection
+ snomedct:399339008:
+ text: snomedct:399339008
+ meaning: snomedct:399339008
+ title: Apical long axis
+ snomedct:399341009:
+ text: snomedct:399341009
+ meaning: snomedct:399341009
+ title: Haas projection
+ snomedct:399342002:
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+ meaning: snomedct:399342002
+ title: Lilienfeld projection
+ snomedct:399344001:
+ text: snomedct:399344001
+ meaning: snomedct:399344001
+ title: Broden projection
+ snomedct:399348003:
+ text: snomedct:399348003
+ meaning: snomedct:399348003
+ title: Antero-posterior projection
+ snomedct:399349006:
+ text: snomedct:399349006
+ meaning: snomedct:399349006
+ title: Stenver's projection
+ snomedct:399351005:
+ text: snomedct:399351005
+ meaning: snomedct:399351005
+ title: Orbito-parietal projection
+ snomedct:399352003:
+ text: snomedct:399352003
+ meaning: snomedct:399352003
+ title: Lateral-medial projection
+ snomedct:399355001:
+ text: snomedct:399355001
+ meaning: snomedct:399355001
+ title: Chausse projection
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+ text: snomedct:399356000
+ meaning: snomedct:399356000
+ title: Right anterior oblique projection
+ snomedct:399358004:
+ text: snomedct:399358004
+ meaning: snomedct:399358004
+ title: Caldwell projection
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+ text: snomedct:399360002
+ meaning: snomedct:399360002
+ title: Verticosubmental projection
+ snomedct:399361003:
+ text: snomedct:399361003
+ meaning: snomedct:399361003
+ title: Nuclear medicine projection
+ snomedct:399362005:
+ text: snomedct:399362005
+ meaning: snomedct:399362005
+ title: Bertel projection
+ snomedct:399365007:
+ text: snomedct:399365007
+ meaning: snomedct:399365007
+ title: Pearson projection
+ snomedct:399368009:
+ text: snomedct:399368009
+ meaning: snomedct:399368009
+ title: Medio-lateral oblique projection
+ snomedct:399370000:
+ text: snomedct:399370000
+ meaning: snomedct:399370000
+ title: Lysholm projection
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+ text: snomedct:399371001
+ meaning: snomedct:399371001
+ title: Parasternal short axis view at the level of the mitral chords
+ snomedct:399372008:
+ text: snomedct:399372008
+ meaning: snomedct:399372008
+ title: Ferguson projection
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+ text: snomedct:399488007
+ meaning: snomedct:399488007
+ title: Midline
+ snomedct:408723005:
+ text: snomedct:408723005
+ meaning: snomedct:408723005
+ title: Cranial LAO
+ snomedct:408724004:
+ text: snomedct:408724004
+ meaning: snomedct:408724004
+ title: Caudal LAO
+ snomedct:408725003:
+ text: snomedct:408725003
+ meaning: snomedct:408725003
+ title: Cranial RAO
+ snomedct:408726002:
+ text: snomedct:408726002
+ meaning: snomedct:408726002
+ title: Caudal RAO
+ snomedct:421610009:
+ text: snomedct:421610009
+ meaning: snomedct:421610009
+ title: Bottom
+ snomedct:421812003:
+ text: snomedct:421812003
+ meaning: snomedct:421812003
+ title: Top
+ snomedct:422534007:
+ text: snomedct:422534007
+ meaning: snomedct:422534007
+ title: Rafert-Long projection
+ snomedct:422568001:
+ text: snomedct:422568001
+ meaning: snomedct:422568001
+ title: Moore projection
+ snomedct:422670003:
+ text: snomedct:422670003
+ meaning: snomedct:422670003
+ title: Apple projection
+ snomedct:422795009:
+ text: snomedct:422795009
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+ title: Neer projection
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+ text: snomedct:422861003
+ meaning: snomedct:422861003
+ title: Burman projection
+ snomedct:422954003:
+ text: snomedct:422954003
+ meaning: snomedct:422954003
+ title: Stryker projection
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+ text: snomedct:422996004
+ meaning: snomedct:422996004
+ title: Wolf projection
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+ meaning: snomedct:423091003
+ title: Colcher-Sussman projection
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+ text: snomedct:423720000
+ meaning: snomedct:423720000
+ title: Rafer projection
+ snomedct:424086005:
+ text: snomedct:424086005
+ meaning: snomedct:424086005
+ title: Hirtz Modification projection
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+ text: snomedct:424655003
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+ title: Eraso Modification projection
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+ meaning: snomedct:424811006
+ title: Danelius-Miller projection
+ snomedct:424962005:
+ text: snomedct:424962005
+ meaning: snomedct:424962005
+ title: Fisk projection
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+ title: Kite projection
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+ title: Robert projection
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+ title: Rosenberg projection
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+ title: Folio projection
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+ meaning: snomedct:425188003
+ title: Garth projection
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+ title: Dorsopalmar projection
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+ meaning: snomedct:441555000
+ title: Inferomedial to superolateral oblique view
+ snomedct:441672003:
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+ meaning: snomedct:441672003
+ title: Dorso-ventral projection
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+ text: snomedct:441753009
+ meaning: snomedct:441753009
+ title: Mammography view
+ snomedct:442361004:
+ text: snomedct:442361004
+ meaning: snomedct:442361004
+ title: Stereoscopic view
+ snomedct:442441009:
+ text: snomedct:442441009
+ meaning: snomedct:442441009
+ title: Ventro-dorsal projection
+ snomedct:442580003:
+ text: snomedct:442580003
+ meaning: snomedct:442580003
+ title: Axillary tissue mammography view
+ snomedct:442581004:
+ text: snomedct:442581004
+ meaning: snomedct:442581004
+ title: Nipple in profile mammography view
+ snomedct:442593008:
+ text: snomedct:442593008
+ meaning: snomedct:442593008
+ title: Infra-mammary fold mammography view
+ snomedct:442594002:
+ text: snomedct:442594002
+ meaning: snomedct:442594002
+ title: Right stereoscopic view
+ snomedct:442640004:
+ text: snomedct:442640004
+ meaning: snomedct:442640004
+ title: Left stereoscopic view
+ snomedct:442653001:
+ text: snomedct:442653001
+ meaning: snomedct:442653001
+ title: Stereoscopic view incremented from baseline
+ snomedct:442667005:
+ text: snomedct:442667005
+ meaning: snomedct:442667005
+ title: Stereoscopic view decremented from baseline
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+ text: snomedct:443082005
+ meaning: snomedct:443082005
+ title: Parasternal long axis view of right ventricular inflow tract
+ snomedct:443083000:
+ text: snomedct:443083000
+ meaning: snomedct:443083000
+ title: Parasternal long axis view of right ventricular outflow tract
+ snomedct:443100003:
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+ meaning: snomedct:443100003
+ title: Subcostal view of cardiac outlets directed anteriorly
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+ title: Subcostal short axis view at papillary muscle level
+ snomedct:443162009:
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+ meaning: snomedct:443162009
+ title: Suprasternal coronal view
+ snomedct:443163004:
+ text: snomedct:443163004
+ meaning: snomedct:443163004
+ title: Suprasternal sagittal view
+ snomedct:443293000:
+ text: snomedct:443293000
+ meaning: snomedct:443293000
+ title: Transgastric short axis view
+ snomedct:443459002:
+ text: snomedct:443459002
+ meaning: snomedct:443459002
+ title: Intramedullary
+ snomedct:443499004:
+ text: snomedct:443499004
+ meaning: snomedct:443499004
+ title: Subcostal short axis view at mitral valve level
+ snomedct:443500008:
+ text: snomedct:443500008
+ meaning: snomedct:443500008
+ title: Subcostal short axis view at venous inflow level
+ snomedct:443562002:
+ text: snomedct:443562002
+ meaning: snomedct:443562002
+ title: Suprasternal long axis view of aortic arch
+ snomedct:443609003:
+ text: snomedct:443609003
+ meaning: snomedct:443609003
+ title: Subcostal short axis view at aortic valve level
+ snomedct:443640005:
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+ meaning: snomedct:443640005
+ title: Subcostal oblique coronal view
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+ text: snomedct:443662005
+ meaning: snomedct:443662005
+ title: Transesophageal four chamber view (qualifier value)
+ snomedct:443698002:
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+ meaning: snomedct:443698002
+ title: Transesophageal short axis view (qualifier value)
+ snomedct:65424008:
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+ meaning: snomedct:65424008
+ title: Contiguous
+ snomedct:66459002:
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+ title: Unilateral
+ snomedct:72906007:
+ text: snomedct:72906007
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+ title: Common
+ snomedct:741000124103:
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+ title: Dorsoventral
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+ title: Dorsolateral
+ snomedct:771000124106:
+ text: snomedct:771000124106
+ meaning: snomedct:771000124106
+ title: Ventrolateral
+ snomedct:781000124109:
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+ title: Palmar
+ reachable_from:
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+ source_nodes:
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+ - snomedct:272424004
+ - snomedct:51440002
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+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ EnumStudyDesign:
+ name: EnumStudyDesign
+ description: Approaches for collecting data, investigating interventions, and/or
+ analyzing data.
+ title: Study Design
+ from_schema: https://includedcc.org/common-access-model/EnumStudyDesign
+ permissible_values:
+ mesh:D003430:
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+ description: Studies in which the presence or absence of disease or other
+ health-related variables are determined in each member of the study population
+ or in a representative sample at one particular time. This contrasts with
+ LONGITUDINAL STUDIES which are followed over a period of time.
+ meaning: mesh:D003430
+ title: Cross-Sectional Studies
+ mesh:D005500:
+ text: mesh:D005500
+ description: Studies in which individuals or populations are followed to assess
+ the outcome of exposures, procedures, or effects of a characteristic, e.g.,
+ occurrence of disease.
+ meaning: mesh:D005500
+ title: Follow-Up Studies
+ mesh:D008137:
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+ description: Studies in which variables relating to an individual or group
+ of individuals are assessed over a period of time.
+ meaning: mesh:D008137
+ title: Longitudinal Studies
+ mesh:D011446:
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+ description: Observation of a population for a sufficient number of persons
+ over a sufficient number of years to generate incidence or mortality rates
+ subsequent to the selection of the study group.
+ meaning: mesh:D011446
+ title: Prospective Studies
+ mesh:D012189:
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+ description: Studies used to test etiologic hypotheses in which inferences
+ about an exposure to putative causal factors are derived from data relating
+ to characteristics of persons under study or to events or experiences in
+ their past. The essential feature is that some of the persons under study
+ have the disease or outcome of interest and their characteristics are compared
+ with those of unaffected persons.
+ meaning: mesh:D012189
+ title: Retrospective Studies
+ mesh:D015331:
+ text: mesh:D015331
+ description: Studies in which subsets of a defined population are identified.
+ These groups may or may not be exposed to factors hypothesized to influence
+ the probability of the occurrence of a particular disease or other outcome.
+ Cohorts are defined populations which, as a whole, are followed in an attempt
+ to determine distinguishing subgroup characteristics.
+ meaning: mesh:D015331
+ title: Cohort Studies
+ mesh:D015528:
+ text: mesh:D015528
+ description: Studies of the number of cases where human immunodeficiency virus
+ (HIV) is present in a specific population at a designated time. The presence
+ in a given individual is determined by the finding of HIV antibodies in
+ the serum (HIV SEROPOSITIVITY).
+ meaning: mesh:D015528
+ title: HIV Seroprevalence
+ mesh:D016022:
+ text: mesh:D016022
+ description: Comparisons that start with the identification of persons with
+ the disease or outcome of interest and a control (comparison, referent)
+ group without the disease or outcome of interest. The relationship of an
+ attribute is examined by comparing both groups with regard to the frequency
+ or levels of outcome over time.
+ meaning: mesh:D016022
+ title: Case-Control Studies
+ mesh:D016036:
+ text: mesh:D016036
+ description: EPIDEMIOLOGIC STUDIES based on the detection through serological
+ testing of characteristic change in the serum level of specific ANTIBODIES.
+ Latent subclinical infections and carrier states can thus be detected in
+ addition to clinically overt cases.
+ meaning: mesh:D016036
+ title: Seroepidemiologic Studies
+ mesh:D063588:
+ text: mesh:D063588
+ description: Longitudinal study of a nationally representative sample of adolescents
+ in grades 7-12 in the United States during the 1994-95 school year. The
+ Add Health cohort has been followed into young adulthood. (from http://www.cpc.unc.edu/projects/addhealth
+ accessed 08/2012)
+ meaning: mesh:D063588
+ title: National Longitudinal Study of Adolescent Health
+ mesh:D065186:
+ text: mesh:D065186
+ description: A study that uses observations at multiple time points before
+ and after an intervention (the interruption), in an attempt to detect whether
+ the intervention has had an effect significantly greater than any underlying
+ trend over time.
+ meaning: mesh:D065186
+ title: Interrupted Time Series Analysis
+ mesh:D065187:
+ text: mesh:D065187
+ description: A study in which observations are made before and after an intervention,
+ both in a group that receives the intervention and in a control group that
+ does not.
+ meaning: mesh:D065187
+ title: Controlled Before-After Studies
+ mesh:D065386:
+ text: mesh:D065386
+ description: A study that compares a group of participants receiving an intervention
+ with a similar group from the past who did not.
+ meaning: mesh:D065386
+ title: Historically Controlled Study
+ mesh:D000068397:
+ text: mesh:D000068397
+ description: A work that reports on the results of a research study to evaluate
+ interventions or exposures on biomedical or health-related outcomes. The
+ two main types of clinical studies are interventional studies (clinical
+ trials) and observational studies. While most clinical studies concern humans,
+ this publication type may be used for clinical veterinary articles meeting
+ the requisites for humans.
+ meaning: mesh:D000068397
+ title: Clinical Study
+ mesh:D000073843:
+ text: mesh:D000073843
+ description: Trial that aims to show a new treatment is no better and no worse
+ than the standard treatment.
+ meaning: mesh:D000073843
+ title: Equivalence Trial
+ mesh:D000076362:
+ text: mesh:D000076362
+ description: Clinical study in which a prospectively planned opportunity is
+ included to modify trial designs and hypotheses based on analysis of data
+ from subjects in the study.
+ meaning: mesh:D000076362
+ title: Adaptive Clinical Trial
+ mesh:D000077522:
+ text: mesh:D000077522
+ description: A work in which animal participants are assigned to receive one
+ or more interventions so that researchers can evaluate the interventions
+ on biomedical or health-related outcomes. The assignments are determined
+ by the study protocol.
+ meaning: mesh:D000077522
+ title: Clinical Trial, Veterinary
+ mesh:D000078182:
+ text: mesh:D000078182
+ description: A review of primary literature in health and health policy that
+ attempts to identify, appraise, and synthesize all the empirical evidence
+ that meets specified eligibility criteria to answer a given research question. Its
+ conduct uses explicit methods aimed at minimizing bias in order to produce
+ more reliable findings regarding the effects of interventions for prevention,
+ treatment, and rehabilitation that can be used to inform decision making.
+ meaning: mesh:D000078182
+ title: Systematic Review
+ mesh:D000078323:
+ text: mesh:D000078323
+ description: Reports on studies of the results of a clinical study in which
+ animal subjects may receive diagnostic, therapeutic, or other types of interventions,
+ where the investigator does not assign participants to specific interventions.
+ meaning: mesh:D000078323
+ title: Observational Study, Veterinary
+ mesh:D000078325:
+ text: mesh:D000078325
+ description: The written description of a clinical study. It contains the
+ study's objectives, design, and methods including subject target and/or
+ enrollment criteria. It may also present relevant scientific background
+ and statistical information.
+ meaning: mesh:D000078325
+ title: Clinical Trial Protocol
+ mesh:D000081262:
+ text: mesh:D000081262
+ description: A work that reports on a clinical trial with animal subjects
+ that involves at least one test treatment and one control treatment, concurrent
+ enrollment and follow-up of the test- and control-treated groups, and in
+ which the treatments to be administered are selected by a random process,
+ such as the use of a random-numbers table.
+ meaning: mesh:D000081262
+ title: Randomized Controlled Trial, Veterinary
+ mesh:D000098368:
+ text: mesh:D000098368
+ description: Trials in which participants are intentionally challenged (whether
+ or not they have been vaccinated) with exposure to an infectious disease
+ organism.
+ meaning: mesh:D000098368
+ title: Human Challenge Trials
+ mesh:D000098583:
+ text: mesh:D000098583
+ description: Review to identify knowledge gaps, scope a body of literature,
+ clarify concepts or to investigate research conduct.
+ meaning: mesh:D000098583
+ title: Scoping Review
+ mesh:D000099094:
+ text: mesh:D000099094
+ description: Works consisting of meta-analysis of randomized trials in which
+ estimates of comparative treatment effects are visualized and interpreted
+ from a network of interventions that may or may not have been evaluated
+ directly against each other. Common considerations in network meta-analysis
+ include conceptual and statistical heterogeneity and incoherence.
+ meaning: mesh:D000099094
+ title: Network Meta-Analysis
+ mesh:D002363:
+ text: mesh:D002363
+ description: Clinical presentations that may be followed by evaluative studies
+ that eventually lead to a diagnosis.
+ meaning: mesh:D002363
+ title: Case Reports
+ mesh:D003160:
+ text: mesh:D003160
+ description: Comparison of outcomes, results, responses, etc for different
+ techniques, therapeutic approaches or other inputs.
+ meaning: mesh:D003160
+ title: Comparative Study
+ mesh:D016426:
+ text: mesh:D016426
+ description: Work consisting of reports by the United States Office of Research
+ Integrity, identifying questionable research published in articles or books.
+ Notification of the questionable data is carried in the NIH Guide for Grants
+ and Contracts.
+ meaning: mesh:D016426
+ title: Scientific Integrity Review
+ mesh:D016429:
+ text: mesh:D016429
+ description: Work that consists of a conference of physicians on their observations
+ of a patient at the bedside, regarding the physical state, laboratory and
+ other diagnostic findings, clinical manifestations, results of current therapy,
+ etc. A clinical conference usually ends with a confirmation or correction
+ of clinical findings by a pathological diagnosis performed by a pathologist.
+ Clinical conference is often referred to as a clinico-pathological conference.
+ meaning: mesh:D016429
+ title: Clinical Conference
+ mesh:D016430:
+ text: mesh:D016430
+ description: A work that reports on the results of a clinical study in which
+ participants are assigned to receive one or more interventions so that researchers
+ can evaluate the interventions on biomedical or health-related outcomes.
+ The assignments are determined by the study protocol. Participants may receive
+ diagnostic, therapeutic, or other types of interventions. For clinical trials
+ on veterinary animals see CLINICAL TRIAL, VETERINARY. Clinical Trials was
+ used for both humans and non-humans prior to 2019.
+ meaning: mesh:D016430
+ title: Clinical Trial
+ mesh:D016446:
+ text: mesh:D016446
+ description: Official statements of the findings or recommendations expressing
+ the outcome of a meeting convened to evaluate current thought and research
+ on a subject of interest.
+ meaning: mesh:D016446
+ title: Consensus Development Conference
+ mesh:D016447:
+ text: mesh:D016447
+ description: Official statements of the finding or recommendations expressing
+ the outcome from a conference sponsored by NIH.
+ meaning: mesh:D016447
+ title: Consensus Development Conference, NIH
+ mesh:D016448:
+ text: mesh:D016448
+ description: A work that reports on a study executed by several cooperating
+ institutions.
+ meaning: mesh:D016448
+ title: Multicenter Study
+ mesh:D016449:
+ text: mesh:D016449
+ description: A work that reports on a clinical trial that involves at least
+ one test treatment and one control treatment, concurrent enrollment and
+ follow-up of the test- and control-treated groups, and in which the treatments
+ to be administered are selected by a random process, such as the use of
+ a random-numbers table.
+ meaning: mesh:D016449
+ title: Randomized Controlled Trial
+ mesh:D017418:
+ text: mesh:D017418
+ description: Works consisting of studies using a quantitative method of combining
+ the results of independent studies (usually drawn from the published literature)
+ and synthesizing summaries and conclusions which may be used to evaluate
+ therapeutic effectiveness, plan new studies, etc. It is often an overview
+ of clinical trials. It is usually called a meta-analysis by the author or
+ sponsoring body and should be differentiated from reviews of literature.
+ meaning: mesh:D017418
+ title: Meta-Analysis
+ mesh:D017426:
+ text: mesh:D017426
+ description: Work that is the report of a pre-planned, usually controlled,
+ clinical study of the safety and efficacy of diagnostic, therapeutic, or
+ prophylactic drugs, devices, or techniques based on a small number of healthy
+ persons and conducted over the period of about a year in either the United
+ States or a foreign country.
+ meaning: mesh:D017426
+ title: Clinical Trial, Phase I
+ mesh:D017427:
+ text: mesh:D017427
+ description: Work that is a report of a pre-planned, usually controlled, clinical
+ study of the safety and efficacy of diagnostic, therapeutic, or prophylactic
+ drugs, devices, or techniques based on several hundred volunteers, including
+ a limited number of patients, and conducted over a period of about two years
+ in either the United States or a foreign country.
+ meaning: mesh:D017427
+ title: Clinical Trial, Phase II
+ mesh:D017428:
+ text: mesh:D017428
+ description: Work that is a report of a pre-planned, usually controlled, clinical
+ study of the safety and efficacy of diagnostic, therapeutic, or prophylactic
+ drugs, devices, or techniques after phase II trials. A large enough group
+ of patients is studied and closely monitored by physicians for adverse response
+ to long-term exposure, over a period of about three years in either the
+ United States or a foreign country.
+ meaning: mesh:D017428
+ title: Clinical Trial, Phase III
+ mesh:D017429:
+ text: mesh:D017429
+ description: Work that is a report of a planned post-marketing study of diagnostic,
+ therapeutic, or prophylactic drugs, devices, or techniques that have been
+ approved for general sale after clinical trials, phases I, II, and III.
+ These studies, conducted in the United States or a foreign country, often
+ garner additional data about the safety and efficacy of a product.
+ meaning: mesh:D017429
+ title: Clinical Trial, Phase IV
+ mesh:D018486:
+ text: mesh:D018486
+ description: Work consisting of reporting using a method of detecting genetic
+ causes in human traits and genetic factors in behavior using sets of twins.
+ meaning: mesh:D018486
+ title: Twin Study
+ mesh:D018848:
+ text: mesh:D018848
+ description: A work that reports on a clinical trial involving one or more
+ test treatments, at least one control treatment, specified outcome measures
+ for evaluating the studied intervention, and a bias-free method for assigning
+ patients to the test treatment. The treatment may be drugs, devices, or
+ procedures studied for diagnostic, therapeutic, or prophylactic effectiveness.
+ Control measures include placebos, active medicine, no-treatment, dosage
+ forms and regimens, historical comparisons, etc. When randomization using
+ mathematical techniques, such as the use of a random numbers table, is employed
+ to assign patients to test or control treatments, the trial is characterized
+ as a RANDOMIZED CONTROLLED TRIAL.
+ meaning: mesh:D018848
+ title: Controlled Clinical Trial
+ mesh:D023361:
+ text: mesh:D023361
+ description: Works consisting of research using processes by which the reliability
+ and relevance of a procedure for a specific purpose are established.
+ meaning: mesh:D023361
+ title: Validation Study
+ mesh:D023362:
+ text: mesh:D023362
+ description: Works consisting of studies determining the effectiveness or
+ utility of processes, personnel, and equipment.
+ meaning: mesh:D023362
+ title: Evaluation Study
+ mesh:D064888:
+ text: mesh:D064888
+ description: A work that reports on the results of a clinical study in which
+ participants may receive diagnostic, therapeutic, or other types of interventions,
+ but the investigator does not assign participants to specific interventions
+ (as in an interventional study).
+ meaning: mesh:D064888
+ title: Observational Study
+ mesh:D065007:
+ text: mesh:D065007
+ description: Randomized clinical trials that compare interventions in clinical
+ settings and which look at a range of effectiveness outcomes and impacts.
+ meaning: mesh:D065007
+ title: Pragmatic Clinical Trial
+ reachable_from:
+ source_ontology: bioregistry:mesh
+ source_nodes:
+ - mesh:D016021
+ - mesh:D052182
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: false
+ EnumSubjectType:
+ name: EnumSubjectType
+ description: Types of Subject entities
+ from_schema: https://includedcc.org/common-access-model/EnumSubjectType
+ permissible_values:
+ CAMO:0000024:
+ text: CAMO:0000024
+ description: Study participant with consent, assent, or waiver of consent.
+ title: Participant
+ aliases:
+ - participant
+ CAMO:0000025:
+ text: CAMO:0000025
+ description: An individual not directly participating in a study, eg, the
+ subject of a reported family history.
+ title: Non-Participant
+ aliases:
+ - non_participant
+ CAMO:0000026:
+ text: CAMO:0000026
+ title: Cell Line
+ aliases:
+ - cell_line
+ CAMO:0000027:
+ text: CAMO:0000027
+ title: Animal Model
+ aliases:
+ - animal_model
+ CAMO:0000028:
+ text: CAMO:0000028
+ description: A group of entities or things being assessed as a whole.
+ title: Group
+ aliases:
+ - group
+ reachable_from:
+ source_ontology: camo
+ source_nodes:
+ - CAMO:0000023
+ relationship_types:
+ - rdfs:subClassOf
+ is_direct: false
+ include_self: true
+ EnumUnknown:
+ name: EnumUnknown
+ description: Base enumeration providing an Unknown option.
+ from_schema: https://includedcc.org/common-access-model/EnumUnknown
+ permissible_values:
+ snomedct:261665006:
+ text: snomedct:261665006
+ title: Unknown
+ aliases:
+ - unknown
+ EnumUnknownOther:
+ name: EnumUnknownOther
+ description: Base enumeration providing Unknown and Other options.
+ from_schema: https://includedcc.org/common-access-model/EnumUnknownOther
+ permissible_values:
+ snomedct:261665006:
+ text: snomedct:261665006
+ title: Unknown
+ aliases:
+ - unknown
+ snomedct:74964007:
+ text: snomedct:74964007
+ title: Other
+ aliases:
+ - other
+ EnumVitalStatus:
+ name: EnumVitalStatus
+ description: Descriptions of a Subject's vital status
+ from_schema: https://includedcc.org/common-access-model/EnumVitalStatus
+ permissible_values:
+ snomedct:419099009:
+ text: snomedct:419099009
+ title: Dead
+ aliases:
+ - dead
+ snomedct:438949009:
+ text: snomedct:438949009
+ title: Alive
+ aliases:
+ - alive
+slots:
+ study_id:
+ name: study_id
+ description: INCLUDE Global ID for the study
+ title: Study ID
+ from_schema: https://includedcc.org/common-access-model
+ range: Study
+ multivalued: false
+ access_policy_id:
+ name: access_policy_id
+ description: Global identifier for the access policy that applies to this row
+ of data.
+ title: Access Policy ID
+ from_schema: https://includedcc.org/common-access-model
+ range: AccessPolicy
+ data_use_accession:
+ name: data_use_accession
+ description: Accession used to provision access to the record, eg, a dbGaP phsID.
+ title: Data Use Accession
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ data_use_permission:
+ name: data_use_permission
+ description: Broad category of restrictions on data use.
+ title: Data Use Permission
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumDataUsePermission
+ required: true
+ data_use_modifier:
+ name: data_use_modifier
+ description: Additional modifiers that limit data use.
+ title: Data Use Modifier
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumDataUseModifier
+ disease_limitation:
+ name: disease_limitation
+ description: If the access is limited to a specific disease purpose, it is specified
+ here.
+ title: Data Use Disease Limitation
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ access_description:
+ name: access_description
+ description: Any additional information to support access requests.
+ title: Access Description
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ do_id:
+ name: do_id
+ description: Digital Object Identifier (DOI) for this Record.
+ title: DOI
+ from_schema: https://includedcc.org/common-access-model
+ range: DOI
+ multivalued: false
+ subject_id:
+ name: subject_id
+ description: INCLUDE Global ID for the Subject
+ title: Study ID
+ from_schema: https://includedcc.org/common-access-model
+ range: Subject
+ multivalued: false
+ assertion_id:
+ name: assertion_id
+ description: INCLUDE Global ID for the Assertion
+ title: Assertion ID
+ from_schema: https://includedcc.org/common-access-model
+ range: SubjectAssertion
+ multivalued: false
+ external_id:
+ name: external_id
+ description: Other identifiers for this entity, eg, from the submitting study
+ or in systems like dbGaP
+ title: External Identifiers
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ required: false
+ multivalued: true
+ parent_study:
+ name: parent_study
+ description: The parent study for this study, if it is a nested study.
+ title: Parent Study
+ from_schema: https://includedcc.org/common-access-model
+ range: Study
+ required: false
+ multivalued: false
+ funding_source:
+ name: funding_source
+ description: The funding source(s) of the study.
+ title: Funding Source
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ required: false
+ multivalued: true
+ principal_investigator:
+ name: principal_investigator
+ description: The Principal Investigator(s) responsible for the study.
+ title: Principal Investigator
+ from_schema: https://includedcc.org/common-access-model
+ range: Investigator
+ required: true
+ multivalued: true
+ study_title:
+ name: study_title
+ description: Full Study Title
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ required: true
+ multivalued: false
+ study_code:
+ name: study_code
+ description: Unique identifier for the study (generally a short acronym)
+ title: Study Code
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ required: true
+ study_short_name:
+ name: study_short_name
+ description: Short name for the study
+ title: Study Code
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ required: false
+ investigator_title:
+ name: investigator_title
+ description: The title of the Investigator, eg, "Assistant Professor"
+ title: Investigator Title
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ required: false
+ name:
+ name: name
+ description: Name of the entity.
+ title: Name
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ required: false
+ email:
+ name: email
+ description: An email address to reach the entity.
+ title: Email Address
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ required: false
+ institution:
+ name: institution
+ description: Name of the institution this record is associated with.
+ title: Institution
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ required: false
+ program:
+ name: program
+ description: Funding source(s) for the study
+ title: Program
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ required: true
+ multivalued: true
+ any_of:
+ - range: uriorcurie
+ - range: EnumProgram
+ study_description:
+ name: study_description
+ description: Brief description of the study (2-4 sentences)
+ title: Study Description
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ required: true
+ website:
+ name: website
+ description: Website with more information about this entity.
+ title: Website
+ from_schema: https://includedcc.org/common-access-model
+ range: uri
+ contact:
+ name: contact
+ description: The individual to contact with questions about this record.
+ title: Contact Person
+ from_schema: https://includedcc.org/common-access-model
+ range: Investigator
+ required: true
+ multivalued: true
+ vbr_id:
+ name: vbr_id
+ description: Information about the study's Virtual Biorepository, if participating
+ title: Virtual Biorepository
+ from_schema: https://includedcc.org/common-access-model
+ range: VirtualBiorepository
+ vbr_readme:
+ name: vbr_readme
+ description: Instructions for contacting or requesting samples from Virtual Biorepository,
+ if participating
+ title: VBR Readme
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ research_domain:
+ name: research_domain
+ description: Main research domain(s) of the study
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ required: true
+ multivalued: true
+ any_of:
+ - range: Concept
+ - range: EnumResearchDomain
+ participant_lifespan_stage:
+ name: participant_lifespan_stage
+ description: Focus age group(s) of the study population
+ title: Participant Lifespan Stage
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumParticipantLifespanStage
+ required: true
+ multivalued: true
+ selection_criteria:
+ name: selection_criteria
+ description: Brief description of inclusion and/or exclusion criteria for the
+ study
+ title: Selection Criteria
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ study_design:
+ name: study_design
+ description: Overall design of study, including whether it is longitudinal and
+ whether family members/unrelated controls are also enrolled
+ title: Study Design
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ required: true
+ multivalued: true
+ any_of:
+ - range: Concept
+ - range: EnumStudyDesign
+ data_category:
+ name: data_category
+ description: General category of data in this Record (e.g. Clinical, Genomics,
+ etc)
+ title: Data Category
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ any_of:
+ - range: Concept
+ - range: EnumDataCategory
+ clinical_data_source_type:
+ name: clinical_data_source_type
+ description: Source(s) of data collected from study participants
+ title: Clinical Data Source Type
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumDataSourceType
+ required: true
+ multivalued: true
+ publication:
+ name: publication
+ description: Publications associated with this Record.
+ title: Publication
+ from_schema: https://includedcc.org/common-access-model
+ range: Publication
+ multivalued: true
+ expected_number_of_participants:
+ name: expected_number_of_participants
+ description: Total expected number of participants to be recruited.
+ title: Expected Number of Participants
+ from_schema: https://includedcc.org/common-access-model
+ range: integer
+ required: true
+ actual_number_of_participants:
+ name: actual_number_of_participants
+ description: Total participants included at this time.
+ title: Actual Number of Participants
+ from_schema: https://includedcc.org/common-access-model
+ range: integer
+ required: true
+ acknowledgments:
+ name: acknowledgments
+ description: Funding statement and acknowledgments for this study
+ title: Acknowledgments
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ citation_statement:
+ name: citation_statement
+ description: Statement that secondary data users should use to acknowledge use
+ of this study or dataset. E.g., "The results analyzed and
+ here are based in whole or in part upon data generated by the INCLUDE (INvestigation
+ of Co-occurring conditions across the Lifespan to Understand Down syndromeE)
+ Project , and were accessed
+ from the INCLUDE Data Hub and ."
+ title: Citation Statement
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ bibliographic_reference:
+ name: bibliographic_reference
+ description: Text use to reference this Record.
+ title: Bibiliographic Reference
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ organism_type:
+ name: organism_type
+ description: Organism Type, typically from NCBITaxon.
+ title: Organism Type
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ any_of:
+ - range: uriorcurie
+ - range: EnumOrganism
+ subject_type:
+ name: subject_type
+ description: Type of entity this record represents
+ title: Subject Type
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ required: true
+ any_of:
+ - range: EnumSubjectType
+ - range: EnumUnknownOther
+ sex:
+ name: sex
+ description: Sex of Participant
+ title: Sex
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ required: true
+ any_of:
+ - range: EnumSex
+ - range: EnumUnknownOther
+ race:
+ name: race
+ description: Race of Participant
+ title: Race
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ required: true
+ multivalued: true
+ any_of:
+ - range: EnumRace
+ - range: EnumUnknownOther
+ ethnicity:
+ name: ethnicity
+ description: Ethnicity of Participant
+ title: Ethnicity
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ required: true
+ any_of:
+ - range: EnumEthnicity
+ - range: EnumUnknownOther
+ age_at_first_engagement:
+ name: age_at_first_engagement
+ description: Age in days of Participant at first recorded study event (enrollment,
+ visit, observation, sample collection, survey completion, etc.). Age at enrollment
+ is preferred, if available.
+ title: Age at First Participant Engagement
+ from_schema: https://includedcc.org/common-access-model
+ range: integer
+ minimum_value: -365
+ maximum_value: 32507
+ unit:
+ ucum_code: d
+ vital_status:
+ name: vital_status
+ description: Whether participant is alive or dead
+ title: Vital Status
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ any_of:
+ - range: EnumVitalStatus
+ - range: EnumUnknown
+ age_at_last_vital_status:
+ name: age_at_last_vital_status
+ description: Age in days when participant's vital status was last recorded
+ title: Age at Last Vital Status
+ from_schema: https://includedcc.org/common-access-model
+ range: integer
+ minimum_value: -365
+ maximum_value: 32507
+ unit:
+ ucum_code: d
+ family_id:
+ name: family_id
+ description: Global ID for the Family
+ title: Family ID
+ from_schema: https://includedcc.org/common-access-model
+ range: Family
+ family_type:
+ name: family_type
+ description: Describes the 'type' of study family, eg, trio.
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumFamilyType
+ family_description:
+ name: family_description
+ description: Free text describing the study family, such as potential inheritance
+ or details about consanguinity
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ consanguinity:
+ name: consanguinity
+ description: Is there known or suspected consanguinity in this study family?
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumPresentAbsent
+ family_study_focus:
+ name: family_study_focus
+ description: The specific focus of the investigation, eg, a condition.
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ family_relationship_id:
+ name: family_relationship_id
+ description: Global ID for the Family Relationship
+ title: Family Relationship ID
+ from_schema: https://includedcc.org/common-access-model
+ range: FamilyRelationship
+ family_member_id:
+ name: family_member_id
+ description: The family member Subject who is the relationship "subject".
+ from_schema: https://includedcc.org/common-access-model
+ range: Subject
+ required: true
+ inlined: false
+ relation:
+ name: relation
+ description: Code definting the relationship predicate. Relationship of the "Family
+ Member" to the "Subject", eg, mother of. Ideally uses KIN ontology.
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ required: true
+ any_of:
+ - range: EnumFamilyRelation
+ - range: EnumUnknown
+ family_membership_id:
+ name: family_membership_id
+ description: ID for the Family Relationship
+ title: Family Relationship ID
+ from_schema: https://includedcc.org/common-access-model
+ range: FamilyMembership
+ family_role:
+ name: family_role
+ description: The "role" of this individual in this family. Could include terms
+ like "proband", "mother", etc.
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ any_of:
+ - range: Concept
+ - range: EnumFamilyRole
+ asserter_type:
+ name: asserter_type
+ description: The original asserter of this information
+ title: Asserter Type
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumAsserterType
+ assertion_source_type:
+ name: assertion_source_type
+ description: The source of this assertion from the original data
+ title: Assertion Source
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumDataSourceType
+ age_at_assertion:
+ name: age_at_assertion
+ description: The age in days of the Subject when the assertion was made.
+ title: Age at assertion
+ from_schema: https://includedcc.org/common-access-model
+ range: integer
+ unit:
+ ucum_code: d
+ age_at_event:
+ name: age_at_event
+ description: The age in days of the Subject at the time point which the assertion
+ describes, eg, age of onset or when a measurement was performed.
+ title: Age at event
+ from_schema: https://includedcc.org/common-access-model
+ range: integer
+ unit:
+ ucum_code: d
+ age_at_resolution:
+ name: age_at_resolution
+ description: The age in days of the Subject when the asserted state was resolved.
+ title: Age at resolution
+ from_schema: https://includedcc.org/common-access-model
+ range: integer
+ unit:
+ ucum_code: d
+ concept:
+ name: concept
+ description: The structured term defining the meaning of the assertion.
+ title: Concept
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ multivalued: true
+ concept_curie:
+ name: concept_curie
+ description: The standardized curie for the term.
+ title: Concept Curie
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ display:
+ name: display
+ description: The friendly display string of the coded term.
+ title: Display String
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ concept_source:
+ name: concept_source
+ description: The source text yielding the standardized concept.
+ title: Concept Source Text
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ value_concept:
+ name: value_concept
+ description: The structured term defining the value of the assertion.
+ title: Value concept
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ multivalued: true
+ any_of:
+ - range: Concept
+ - range: EnumPresentAbsent
+ value_number:
+ name: value_number
+ description: The numeric value of the assertion.
+ title: Value Number
+ from_schema: https://includedcc.org/common-access-model
+ range: float
+ value_source:
+ name: value_source
+ description: The source text yielding the value.
+ title: Value Source Text
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ value_unit:
+ name: value_unit
+ description: The structured term defining the units of the value.
+ title: Value Units
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ value_unit_source:
+ name: value_unit_source
+ description: The source text yielding the value's units.
+ title: Value Units Source Text
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ sample_id:
+ name: sample_id
+ description: The unique identifier for this Sample.
+ title: Sample ID
+ from_schema: https://includedcc.org/common-access-model
+ range: Sample
+ parent_sample_id:
+ name: parent_sample_id
+ description: Sample from which this sample is derived
+ title: Parent Sample ID
+ from_schema: https://includedcc.org/common-access-model
+ range: Sample
+ inlined: false
+ biospecimen_collection_id:
+ name: biospecimen_collection_id
+ description: Unique identifier for this Biospecimen Collection.
+ title: Biospecimen Collection ID
+ from_schema: https://includedcc.org/common-access-model
+ range: BiospecimenCollection
+ aliquot_id:
+ name: aliquot_id
+ description: Unique identifier for an Aliquot.
+ title: Aliquot ID
+ from_schema: https://includedcc.org/common-access-model
+ range: Aliquot
+ sample_type:
+ name: sample_type
+ description: Type of material of which this Sample is comprised. UBERON is recommended.
+ title: Sample Type
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ required: true
+ processing:
+ name: processing
+ description: Processing that was applied to the Parent Sample or from the Biospecimen
+ Collection that yielded this distinct sample. OBI is recommended.
+ title: Sample Processing
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ multivalued: true
+ availability_status:
+ name: availability_status
+ description: Can this Sample be requested for further analysis?
+ title: Sample Availability
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumAvailabilityStatus
+ storage_method:
+ name: storage_method
+ description: Sample storage method, eg, Frozen or with additives. OBI may be suitable,
+ or ChEBI for additives.
+ title: Sample Storage Method
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ multivalued: true
+ quantity_number:
+ name: quantity_number
+ description: The total quantity of the specimen
+ title: Quantity
+ from_schema: https://includedcc.org/common-access-model
+ range: float
+ quantity_unit:
+ name: quantity_unit
+ description: The structured term defining the units of the quantity.
+ title: Quantity Units
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ concentration_number:
+ name: concentration_number
+ description: What is the concentration of the analyte in the Aliquot?
+ title: Concentration
+ from_schema: https://includedcc.org/common-access-model
+ range: float
+ concentration_unit:
+ name: concentration_unit
+ description: Units associated with the concentration of the analyte in the Aliquot.
+ title: Concentration Units
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ age_at_collection:
+ name: age_at_collection
+ description: The age at which this biospecimen was collected in decimal years.
+ title: Age at Biospecimen Collection
+ from_schema: https://includedcc.org/common-access-model
+ range: float
+ unit:
+ ucum_code: a
+ method:
+ name: method
+ description: The approach used to collect the biospecimen.
+ title: Biospecimen Collection Method
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumSampleCollectionMethod
+ site:
+ name: site
+ description: The location of the specimen collection.
+ title: Biospecimen Collection Site
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ any_of:
+ - range: Concept
+ - range: EnumSite
+ spatial_qualifier:
+ name: spatial_qualifier
+ description: Qualifier that further refine the specific location of biospecimen
+ collection
+ title: Spatial Qualifier
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ any_of:
+ - range: Concept
+ - range: EnumSpatialQualifiers
+ laterality:
+ name: laterality
+ description: Laterality that further refine the specific location of biospecimen
+ collection
+ title: Location Laterality
+ from_schema: https://includedcc.org/common-access-model
+ range: Concept
+ any_of:
+ - range: Concept
+ - range: EnumLaterality
+ encounter_id:
+ name: encounter_id
+ description: Unique identifier for this Encounter.
+ title: Encounter ID
+ from_schema: https://includedcc.org/common-access-model
+ range: Encounter
+ description:
+ name: description
+ description: Description for this entity.
+ title: Description
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ encounter_definition_id:
+ name: encounter_definition_id
+ description: Unique identifier for this Encounter Definition.
+ title: Encounter Definition ID
+ from_schema: https://includedcc.org/common-access-model
+ range: EncounterDefinition
+ activity_definition_id:
+ name: activity_definition_id
+ description: Unique identifier for this Activity Definition.
+ title: Activity Definition ID
+ from_schema: https://includedcc.org/common-access-model
+ range: ActivityDefinition
+ file_id:
+ name: file_id
+ description: Unique identifier for this File.
+ title: File ID
+ from_schema: https://includedcc.org/common-access-model
+ range: File
+ filename:
+ name: filename
+ description: The name of the file.
+ title: Filename
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ format:
+ name: format
+ description: The format of the file.
+ title: File Format
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumEDAMFormats
+ file_extension:
+ name: file_extension
+ description: Typically a 3-4 letter code at the end of a filename that identifies
+ the file format. Empty string for no extension.
+ title: File Extension
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ required: true
+ data_type:
+ name: data_type
+ description: The type of data within this file.
+ title: Data Type
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumEDAMDataTypes
+ size:
+ name: size
+ description: Size of the file, in Bytes. May require BigInt or similar.
+ title: File Size
+ from_schema: https://includedcc.org/common-access-model
+ range: integer
+ unit:
+ ucum_code: By
+ internal_uri:
+ name: internal_uri
+ description: URI/URL for internal access to the data. May be temporary.
+ title: Internal Staging Location
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ release_uri:
+ name: release_uri
+ description: URI/URL for controlled or open access to the data.
+ title: Release Location
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ drs_uri:
+ name: drs_uri
+ description: DRS location to access the data.
+ title: DRS URI
+ from_schema: https://includedcc.org/common-access-model
+ range: uriorcurie
+ storage_class:
+ name: storage_class
+ description: Storage class of the object, reflecting cost and access characteristics.
+ title: Storage Class
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ availability:
+ name: availability
+ description: Is or was this file available to users?
+ title: File Availability
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumAvailabilityStatus
+ hash:
+ name: hash
+ description: File hash information
+ title: File Hash
+ from_schema: https://includedcc.org/common-access-model
+ range: FileHash
+ multivalued: true
+ hash_type:
+ name: hash_type
+ description: The type of file hash, eg, md5
+ title: File Hash Type
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumFileHashType
+ hash_value:
+ name: hash_value
+ description: The value of the file hash
+ title: File Hash Value
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ assay_id:
+ name: assay_id
+ description: The unique identifier for the Assay.
+ title: Assay ID
+ from_schema: https://includedcc.org/common-access-model
+ range: Assay
+ assay_type:
+ name: assay_type
+ description: The type of assay performed.
+ title: Assay Type
+ from_schema: https://includedcc.org/common-access-model
+ range: EnumAssayType
+ assay_source:
+ name: assay_source
+ description: The original description of the Assay performed.
+ title: Assay Source Text
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ dataset_id:
+ name: dataset_id
+ description: Unique identifier for a Dataset.
+ title: Dataset ID
+ from_schema: https://includedcc.org/common-access-model
+ range: Dataset
+ data_collection_start:
+ name: data_collection_start
+ description: The date that data collection started. May include only a year.
+ title: Data Collection Start
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+ data_collection_end:
+ name: data_collection_end
+ description: The date that data collection started. May include only a year.
+ title: Data Collection End
+ from_schema: https://includedcc.org/common-access-model
+ range: string
+classes:
+ Any:
+ name: Any
+ from_schema: https://includedcc.org/common-access-model
+ class_uri: linkml:Any
+ Record:
+ name: Record
+ description: One row / entity within the database
+ title: Record
+ from_schema: https://includedcc.org/common-access-model
+ abstract: true
+ slots:
+ - external_id
+ - access_policy_id
+ - study_id
+ AccessPolicy:
+ name: AccessPolicy
+ description: The access policy that describes the controls around use of data
+ title: Access Policy
+ from_schema: https://includedcc.org/common-access-model
+ slots:
+ - access_policy_id
+ - data_use_accession
+ - data_use_permission
+ - data_use_modifier
+ - disease_limitation
+ - access_description
+ - website
+ slot_usage:
+ access_policy_id:
+ name: access_policy_id
+ identifier: true
+ range: coGlobalID
+ required: true
+ Study:
+ name: Study
+ description: Study Metadata
+ title: Research Study
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - parent_study
+ - study_title
+ - study_code
+ - study_short_name
+ - program
+ - funding_source
+ - principal_investigator
+ - contact
+ - study_description
+ - website
+ - publication
+ - acknowledgments
+ - citation_statement
+ - do_id
+ slot_usage:
+ study_id:
+ name: study_id
+ identifier: true
+ range: sdGlobalID
+ required: true
+ StudyMetadata:
+ name: StudyMetadata
+ description: Additional features about studies that may not apply to all studies
+ title: Study Metadata
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - study_id
+ - participant_lifespan_stage
+ - selection_criteria
+ - study_design
+ - clinical_data_source_type
+ - data_category
+ - vbr_id
+ - research_domain
+ - expected_number_of_participants
+ - actual_number_of_participants
+ slot_usage:
+ study_id:
+ name: study_id
+ identifier: true
+ required: true
+ data_category:
+ name: data_category
+ required: true
+ multivalued: true
+ VirtualBiorepository:
+ name: VirtualBiorepository
+ description: An organization that can provide access to specimen for further analysis.
+ title: Virtual BioRepository (VBR)
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - vbr_id
+ - name
+ - institution
+ - contact
+ - website
+ - vbr_readme
+ slot_usage:
+ vbr_id:
+ name: vbr_id
+ identifier: true
+ range: orGlobalID
+ required: true
+ DOI:
+ name: DOI
+ description: A DOI is a permanent reference with metadata about a digital object.
+ title: Digital Object Identifier (DOI)
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - do_id
+ - bibliographic_reference
+ slot_usage:
+ do_id:
+ name: do_id
+ identifier: true
+ range: string
+ required: true
+ Investigator:
+ name: Investigator
+ description: An individual who made contributions to the collection, analysis,
+ or sharing of data.
+ title: Investigator
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - name
+ - institution
+ - investigator_title
+ - email
+ Publication:
+ name: Publication
+ description: Information about a specific publication.
+ title: Publication
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - bibliographic_reference
+ - website
+ Subject:
+ name: Subject
+ description: This entity is the subject about which data or references are recorded.
+ This includes the idea of a human participant in a study, a cell line, an animal
+ model, or any other similar entity.
+ title: Subject
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - subject_id
+ - subject_type
+ - organism_type
+ slot_usage:
+ subject_id:
+ name: subject_id
+ identifier: true
+ range: ptGlobalID
+ required: true
+ Demographics:
+ name: Demographics
+ description: Basic participant demographics summary
+ title: Demographics
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - subject_id
+ - sex
+ - race
+ - ethnicity
+ - age_at_last_vital_status
+ - vital_status
+ - age_at_first_engagement
+ slot_usage:
+ subject_id:
+ name: subject_id
+ identifier: true
+ required: true
+ Family:
+ name: Family
+ description: A group of individuals of some relation who are grouped together
+ in a study.
+ title: Family
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - family_id
+ - family_type
+ - family_description
+ - consanguinity
+ - family_study_focus
+ slot_usage:
+ family_id:
+ name: family_id
+ identifier: true
+ range: grGlobalID
+ required: true
+ FamilyRelationship:
+ name: FamilyRelationship
+ description: A relationship between two Subjects. Directed as follows
+
+ title: Family Member Relationship
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - family_relationship_id
+ - family_member_id
+ - relation
+ - subject_id
+ slot_usage:
+ family_relationship_id:
+ name: family_relationship_id
+ identifier: true
+ range: fmGlobalID
+ required: true
+ subject_id:
+ name: subject_id
+ description: The family member Subject who is the relationship "object".
+ required: true
+ FamilyMembership:
+ name: FamilyMembership
+ description: Designates a Subject as a member of a family with a specified role.
+ title: Family Membership
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - family_membership_id
+ - family_id
+ - subject_id
+ - family_role
+ slot_usage:
+ family_membership_id:
+ name: family_membership_id
+ identifier: true
+ range: string
+ required: true
+ family_id:
+ name: family_id
+ required: true
+ subject_id:
+ name: subject_id
+ required: true
+ SubjectAssertion:
+ name: SubjectAssertion
+ description: Assertion about a particular Subject. May include Conditions, Measurements,
+ etc.
+ title: Subject Assertion
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - assertion_id
+ - subject_id
+ - encounter_id
+ - asserter_type
+ - assertion_source_type
+ - age_at_assertion
+ - age_at_event
+ - age_at_resolution
+ - concept
+ - concept_source
+ - value_concept
+ - value_number
+ - value_source
+ - value_unit
+ - value_unit_source
+ slot_usage:
+ assertion_id:
+ name: assertion_id
+ identifier: true
+ range: string
+ required: true
+ any_of:
+ - range: obGlobalID
+ - range: deGlobalID
+ - range: msGlobalID
+ Concept:
+ name: Concept
+ description: A standardized concept with display information.
+ title: Concept
+ from_schema: https://includedcc.org/common-access-model
+ slots:
+ - concept_curie
+ - display
+ slot_usage:
+ concept_curie:
+ name: concept_curie
+ identifier: true
+ required: true
+ Sample:
+ name: Sample
+ description: A functionally equivalent specimen taken from a participant or processed
+ from such a sample.
+ title: Sample
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - sample_id
+ - biospecimen_collection_id
+ - parent_sample_id
+ - sample_type
+ - processing
+ - availability_status
+ - storage_method
+ - quantity_number
+ - quantity_unit
+ slot_usage:
+ sample_id:
+ name: sample_id
+ identifier: true
+ range: bsGlobalID
+ required: true
+ biospecimen_collection_id:
+ name: biospecimen_collection_id
+ description: Biospecimen Collection during which this sample was generated.
+ BiospecimenCollection:
+ name: BiospecimenCollection
+ description: A biospecimen collection event which yields one or more Samples.
+ title: BiospecimenCollection
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - biospecimen_collection_id
+ - age_at_collection
+ - method
+ - site
+ - spatial_qualifier
+ - laterality
+ - encounter_id
+ slot_usage:
+ biospecimen_collection_id:
+ name: biospecimen_collection_id
+ identifier: true
+ range: string
+ required: true
+ Aliquot:
+ name: Aliquot
+ description: A specific tube or amount of a biospecimen associated with a Sample.
+ title: Aliquot
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - aliquot_id
+ - sample_id
+ - availability_status
+ - quantity_number
+ - quantity_unit
+ - concentration_number
+ - concentration_unit
+ slot_usage:
+ aliquot_id:
+ name: aliquot_id
+ identifier: true
+ range: string
+ required: true
+ Encounter:
+ name: Encounter
+ description: An event at which data was collected about a participant, an intervention
+ was made, or information about a participant was recorded.
+ title: Participant Encounter
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - encounter_id
+ - subject_id
+ - encounter_definition_id
+ - age_at_event
+ slot_usage:
+ encounter_id:
+ name: encounter_id
+ identifier: true
+ range: enGlobalID
+ required: true
+ EncounterDefinition:
+ name: EncounterDefinition
+ description: A definition of an encounter type in this study, ie, an event at
+ which data was collected about a participant, an intervention was made, or information
+ about a participant was recorded. This may be something planned by a study or
+ a type of data collection.
+ title: Encounter Definition
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - encounter_definition_id
+ - name
+ - description
+ - activity_definition_id
+ slot_usage:
+ encounter_definition_id:
+ name: encounter_definition_id
+ identifier: true
+ range: pdGlobalID
+ required: true
+ activity_definition_id:
+ name: activity_definition_id
+ multivalued: true
+ ActivityDefinition:
+ name: ActivityDefinition
+ description: A definition of an activity in this study, eg, a biospecimen collection,
+ assay, intervention, survey, or assessment.
+ title: Activity Definition
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - activity_definition_id
+ - name
+ - description
+ slot_usage:
+ activity_definition_id:
+ name: activity_definition_id
+ identifier: true
+ range: adGlobalID
+ required: true
+ File:
+ name: File
+ description: File
+ title: File
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - file_id
+ - subject_id
+ - sample_id
+ - filename
+ - format
+ - file_extension
+ - data_category
+ - data_type
+ - format
+ - size
+ - internal_uri
+ - release_uri
+ - drs_uri
+ - storage_class
+ - hash
+ - availability
+ slot_usage:
+ file_id:
+ name: file_id
+ identifier: true
+ range: drGlobalID
+ required: true
+ subject_id:
+ name: subject_id
+ multivalued: true
+ sample_id:
+ name: sample_id
+ multivalued: true
+ FileHash:
+ name: FileHash
+ description: Type and value of a file content hash.
+ title: File Hash
+ from_schema: https://includedcc.org/common-access-model
+ slots:
+ - hash_type
+ - hash_value
+ Assay:
+ name: Assay
+ description: A specific assay that was performed on given subject(s) or sample(s).
+ title: Assay
+ from_schema: https://includedcc.org/common-access-model
+ mixins:
+ - Record
+ slots:
+ - assay_id
+ - subject_id
+ - sample_id
+ - file_id
+ - assay_type
+ - assay_source
+ - activity_definition_id
+ slot_usage:
+ assay_id:
+ name: assay_id
+ identifier: true
+ range: diGlobalID
+ required: true
+ file_id:
+ name: file_id
+ multivalued: true
+ subject_id:
+ name: subject_id
+ multivalued: true
+ sample_id:
+ name: sample_id
+ multivalued: true
+ assay_type:
+ name: assay_type
+ required: true
+ Dataset:
+ name: Dataset
+ description: Set of files grouped together for release.
+ title: Dataset
+ from_schema: https://includedcc.org/common-access-model
+ slots:
+ - dataset_id
+ - name
+ - description
+ - do_id
+ - file_id
+ - publication
+ - data_collection_start
+ - data_collection_end
+ slot_usage:
+ dataset_id:
+ name: dataset_id
+ identifier: true
+ range: lsGlobalID
+ required: true
+ file_id:
+ name: file_id
+ description: The list of files comprising this dataset.
+ multivalued: true
+source_file: src/common_access_model/schema/common_access_model.yaml
diff --git a/tests/data/valid/IncludeParticipant-000.yaml b/tests/data/valid/IncludeParticipant-000.yaml
index 6e03199..fed4647 100644
--- a/tests/data/valid/IncludeParticipant-000.yaml
+++ b/tests/data/valid/IncludeParticipant-000.yaml
@@ -1,6 +1,6 @@
subject_id: subject000
-sex: male
-race:
- - american_indian_or_alaska_native
-ethnicity: hispanic_or_latino
-down_syndrome_status: d21
\ No newline at end of file
+sex: snomedct:248153007
+race:
+ - CDCREC:1002-5
+ethnicity: CDCREC:2135-2
+down_syndrome_status: d21
diff --git a/tests/data/valid/Subject-000.yaml b/tests/data/valid/Subject-000.yaml
index 54f88a0..bf5476b 100644
--- a/tests/data/valid/Subject-000.yaml
+++ b/tests/data/valid/Subject-000.yaml
@@ -1,2 +1,2 @@
subject_id: subject000
-subject_type: participant
\ No newline at end of file
+subject_type: CAMO:0000024
diff --git a/uv.lock b/uv.lock
index 5f10737..027ce65 100644
--- a/uv.lock
+++ b/uv.lock
@@ -1,34 +1,16 @@
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revision = 3
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+requires-python = ">=3.10, <4.0"
resolution-markers = [
"python_full_version >= '3.14'",
"python_full_version >= '3.11' and python_full_version < '3.14'",
- "python_full_version == '3.10.*'",
- "python_full_version < '3.10'",
-]
-
-[[package]]
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+ "python_full_version < '3.11'",
]
[[package]]
name = "alabaster"
version = "1.0.0"
source = { registry = "https://pypi.org/simple" }
-resolution-markers = [
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-
-[package.optional-dependencies]
-css = [
- { name = "tinycss2", marker = "python_full_version < '3.10'" },
-]
-
[[package]]
name = "bleach"
version = "6.3.0"
source = { registry = "https://pypi.org/simple" }
-resolution-markers = [
- "python_full_version >= '3.14'",
- "python_full_version >= '3.11' and python_full_version < '3.14'",
- "python_full_version == '3.10.*'",
-]
dependencies = [
- { name = "webencodings", marker = "python_full_version >= '3.10'" },
+ { name = "webencodings" },
]
sdist = { url = "https://files.pythonhosted.org/packages/07/18/3c8523962314be6bf4c8989c79ad9531c825210dd13a8669f6b84336e8bd/bleach-6.3.0.tar.gz", hash = "sha256:6f3b91b1c0a02bb9a78b5a454c92506aa0fdf197e1d5e114d2e00c6f64306d22", size = 203533, upload-time = "2025-10-27T17:57:39.211Z" }
wheels = [
@@ -239,7 +196,7 @@ wheels = [
[package.optional-dependencies]
css = [
- { name = "tinycss2", marker = "python_full_version >= '3.10'" },
+ { name = "tinycss2" },
]
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