From 4fe0b4987585a8506d7006dc3ab591972022f135 Mon Sep 17 00:00:00 2001 From: Eric Torstenson Date: Mon, 24 Aug 2026 13:46:11 -0500 Subject: [PATCH 1/8] No more submodule --- .gitmodules | 3 --- src/include_access_model/schema/common-access-model | 1 - 2 files changed, 4 deletions(-) delete mode 160000 src/include_access_model/schema/common-access-model diff --git a/.gitmodules b/.gitmodules index c4c43c2..e69de29 100644 --- a/.gitmodules +++ b/.gitmodules @@ -1,3 +0,0 @@ -[submodule "src/include_access_model/schema/common-access-model"] - path = src/include_access_model/schema/common-access-model - url = https://github.com/include-dcc/common-access-model diff --git a/src/include_access_model/schema/common-access-model b/src/include_access_model/schema/common-access-model deleted file mode 160000 index a2e29d4..0000000 --- a/src/include_access_model/schema/common-access-model +++ /dev/null @@ -1 +0,0 @@ -Subproject commit a2e29d45acdf545c8387dc33e7ae5ba54fea2659 From 94300287c9b6a05b8f79efbf378cf57a414fb7a1 Mon Sep 17 00:00:00 2001 From: Eric Torstenson Date: Mon, 24 Aug 2026 14:35:25 -0500 Subject: [PATCH 2/8] Initial pass of the modernized cam integration --- .github/workflows/release.yaml | 82 + COLLABORATORS.md | 72 + config.yaml | 1 + docs/dbt_artifacts.md | 90 + justfile | 9 +- mkdocs.yml | 1 + project.justfile | 21 +- pyproject.toml | 30 +- .../schema/include_access_model.yaml | 80 +- .../common_access_model-0.0.7.yaml | 28720 ++++++++++++++++ .../upstream-models/common_access_model.yaml | 1 + uv.lock | 1035 +- 12 files changed, 29286 insertions(+), 856 deletions(-) create mode 100644 .github/workflows/release.yaml create mode 100644 COLLABORATORS.md create mode 100644 docs/dbt_artifacts.md create mode 100644 src/include_access_model/schema/upstream-models/common_access_model-0.0.7.yaml create mode 120000 src/include_access_model/schema/upstream-models/common_access_model.yaml diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml new file mode 100644 index 0000000..7b5fbd9 --- /dev/null +++ b/.github/workflows/release.yaml @@ -0,0 +1,82 @@ +name: Model Release + +on: + push: + tags: + - "v*" + release: + types: [published] + workflow_dispatch: + inputs: + tag: + description: "Tag to release (e.g. v1.2.3)" + required: true + +env: + FORCE_COLOR: "1" + RELEASE_TAG: ${{ github.ref_name || github.event.inputs.tag }} + +jobs: + release: + runs-on: ubuntu-latest + permissions: + contents: write # Required to create GitHub Releases and upload assets + + steps: + - name: Checkout repository + uses: actions/checkout@v7.0.1 + with: + fetch-depth: 0 # Required for uv-dynamic-versioning to read git tags + persist-credentials: false + submodules: 'recursive' # grab submodules + + - name: Set up uv + uses: astral-sh/setup-uv@v9.0.0 + with: + enable-cache: true + + - name: Set up Python + uses: actions/setup-python@v7.0.0 + with: + python-version: "3.10" + + - name: Install just + run: uv tool install rust-just + + # Install gen-sqla before uv sync so the hatch build hook can find it + # when building the editable install during `uv sync --no-install-project`. + - name: Install gen-sqla + run: uv tool install linkml + + - name: Install dependencies + run: uv sync --dev --no-progress --no-install-project + + - name: Install project + run: uv sync --dev --no-progress + + - name: Generate all model artifacts + run: | + just site + # Runs gen-project, gen-doc, _gen_ftddd, _gen_sqla, _gen_harmony + # Produces: project/sqlalchemy/, project/harmony/, project/owl/, etc. + # hatch_build.py will skip re-generating the SQLAlchemy file since + # just site already created it (dest_file.exists() guard). + + - name: Build wheel and sdist + run: uv build + + - name: Zip full project artifacts + run: zip -r project-artifacts.zip project/ + + - name: Create GitHub Release + uses: softprops/action-gh-release@v3 + with: + tag_name: ${{ env.RELEASE_TAG }} + name: "Release ${{ env.RELEASE_TAG }}" + generate_release_notes: true + update_release: true + files: | + dist/*.whl + dist/*.tar.gz + project-artifacts.zip + fail_on_unmatched_files: true diff --git a/COLLABORATORS.md b/COLLABORATORS.md new file mode 100644 index 0000000..f2f9c05 --- /dev/null +++ b/COLLABORATORS.md @@ -0,0 +1,72 @@ +## Welcome to the Kids First Access Model 🚀 + +This repository serves as a downstream model designed to specialize the +[Common Access Model](https://github.com/include-dcc/common-access-model). A +pinned version of this upstream model is captured in +src/kf_access_model/schema/upstream-models/common_access_model*.yaml. + +The purpose of this model is to build out a program-specific extension (or +profile) by importing the core elements and layering the Kids First unique data +requirements on top. + +## Key Integration Guidelines + +- The upstream-models/common_access_model.yaml should never be updated. This + should be treated like any other machine generated file and left alone. If + changes must be made to the upstream model, they should be made directly to + that model, a release published and the local version updated using the + tooling proved. +- Leverage Imports: At this time, the current model imports the + common_access_model.yaml directly within the main model definition. +- Extend via Inheritance: Use the is_a or mixins keys to create program-specific + subclasses that inherit core slots while allowing you to add local attributes. +- Refine via Slot Usage: If you need to restrict or change the behavior of an + inherited core slot just for your program's classes, use the slot_usage + feature. + +## Updating to the newest common_access_model + +Upon new releases in the common_access_model, a flattened version of the model +is generated and made available immediately. Tooling is provided to +automatically pull the newest version down and link it correctly to work without +making any changes to the local model's yaml. + +```bash +just update-cam +``` + +This recipe will download the newest version to the directory, +src/kf_access_model/schema/upstream-models and create a symbolic link from the +common name, common_access_model.yaml. As a result, once that one entry has been +made to the local model, subsequent updates should work without further updates +to the model itself. + +```model-yaml +imports: + - upstream-models/common_access_model +``` + +The current version of the common_access_model and the symbolic link should be +properly managed by git so that all collaborators will be working on the same +core model. + +> [WARNING] This will bring the upstream model to the most current version and, +> as such, should only be performed according to planned upgrades. + +## Release Artifacts + +There are a number of artifacts which are used by various scripts including the +dbt utilities which are built via github actions during release. To trigger the +build, create releases linked to a semantic version preceded with a v (i.e. +v1.0.1). + +These artifacts include: + +- SQL Alchemy model +- dbt model yml file +- SQL Schema +- data dictionary conformant to the current FTD spec +- enumerations csv file extracted from all of the permissible values + +The last two are used by this group's dbt utilities tooling. The SQL Alchemy +model is used by a handful of other scripts. diff --git a/config.yaml b/config.yaml index c038281..c37997f 100644 --- a/config.yaml +++ b/config.yaml @@ -6,6 +6,7 @@ # By default all generators are run. Specify here the ones to skip. excludes: - markdown + - graphql # Alternatively only specify the generators to run # (comment out the above "excludes" section) diff --git a/docs/dbt_artifacts.md b/docs/dbt_artifacts.md new file mode 100644 index 0000000..bea96d0 --- /dev/null +++ b/docs/dbt_artifacts.md @@ -0,0 +1,90 @@ +# Custom Artifact Generation (dbt) + +We have a handful of custom scripts that build various artifacts required by +different components of the various data pipeline components. These should all +be handled by the CI/CD pipeline and added to the release's Assets list. + +- The SQL Alchemy model is available directly from the assets list as a whl file + and can be added to your python distribution using @git+{url} syntax. +- The all artifacts generated by the _just site_ recipe can be found inside the + release assets' _project_artifacts.zip_ file. + +To trigger the production of these assets, a new release should be created with +a semantic version based tag that starts with v: v1.0.0, etc. + +## The dbt Recipe + +A dumb wrapper recipe has been created with dependencies to trigger the +production of each of those dbt related artifacts. + +This recipe has been added as a dependency of the standard recipe, _site_. + +```bash +just dbt +``` + +Example command to add the model to your uv based python project: + +```bash +uv add common_access_model@https://github.com/include-dcc/common-access-model/releases/download/0.0.1/common_access_model-0.0.0.post89.dev0+d378cee-py3-none-any.whl +``` + +Please note the _releases/download/0.0.1_ portion of the url. That is to a +specific version of the model itself, which is by design. You will need to +update your project each time you want to update to a new model. + +In a similar fashion, you can install it via pip or add it to your +pyproject.toml file using a similar pattern. + +### SQL Alchemy Model + +Many of our tools rely on the SQL Alchemy models produced using LinkML's SQL +Alchemy generator. We've added just recipe's to run build these: + +```bash +just sqla +``` + +The resulting file is found inside _project/sqlalchemy/{model_name}.py_ + +### Data Dictionary csv files + +The pipeline utitilies created by the FTD team rely on csv data dictionaries to +the target .sql files. + +```bash +just _gen_ftddd +``` + +Resulting csv files can be found inside: _project/data-dictionary/\*.csv_ + +Each class from the model and any of the SQL specific join tables will be found +in their own file, conforming to the +[FTD DD Format](https://nih-ncpi.github.io/map-dragon/#/datadictionary). + +### Model Enums + +This is a CSV file that contains each enumeration and it's home within the +datamodel. It is used by the dbt pipeline utitilies. This is a secondary +artifact from the _gen_ftddd recipe. + +The resulting file is found inside _project/enumerations/model_enums.csv_ + +### dbt Model + +A complete model that can be immediately dropped into your dbt pipeline can be +generated that features various dbt tests based on the model's definition +including: + +- valid_uri_format +- foreign key target must exist +- uri-or-curie +- multi-column keys +- not null +- unique +- allowable values + +The resulting file is found inside _project/dbt/src_dev_include_access.yml_ + +The filename is purely a placeholder and should be renamed to whatever makes +sense for your needs. diff --git a/justfile b/justfile index adddddd..5afe7b4 100644 --- a/justfile +++ b/justfile @@ -76,12 +76,7 @@ clean: _clean_project # (Re-)Generate project and documentation locally [group('model development')] -site: gen-project gen-doc gensqla - -# SQL Alchemy model -[group('model development')] -gensqla: _gen_sqla - +site: gen-project gen-doc dbt # Deploy documentation site to Github Pages [group('deployment')] @@ -118,7 +113,7 @@ gen-python: # Generate project files including Python data model [group('model development')] -gen-project: _merge_common +gen-project: uv run gen-project {{config_yaml}} -d {{dest}} {{source_schema_path}} mv {{dest}}/*.py {{pymodel}} uv run gen-pydantic {{gen_pydantic_args}} {{source_schema_path}} > {{pymodel}}/{{schema_name}}_pydantic.py diff --git a/mkdocs.yml b/mkdocs.yml index 28d4a18..ef626b2 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -28,6 +28,7 @@ nav: # - Home: index.md - Schema: elements/index.md - ER Diagram: elements/erdiagram.md + - dbt: dbt_artifacts - About: about.md exclude_docs: | diff --git a/project.justfile b/project.justfile index d5b1104..80989ca 100644 --- a/project.justfile +++ b/project.justfile @@ -3,11 +3,26 @@ # Overriding recipes from the root justfile by adding a recipe with the same # name in this file is not possible until a known issue in just is fixed, # https://github.com/casey/just/issues/2540 + +# Support for various dbt related tasks [group('model development')] -_merge_common: - git submodule update --init --recursive +dbt: gen-sqla gen-ftddd gen-dbtmodel +# SQL Alchemy model [group('model development')] -_gen_sqla: +gen-sqla: mkdir -p {{dest}}/sqlalchemy && \ uv run gen-sqla {{source_schema_path}} --declarative > {{dest}}/sqlalchemy/{{schema_name}}.py + + +[group('model development')] +gen-ftddd: + uv run linkml_extract_dd {{source_schema_path}} + +[group('model development')] +gen-dbtmodel: + uv run gen-dbtmodel + +[group('model development')] +update-cam: + uv run update-cam -d src/include_access_model/schema/upstream-models diff --git a/pyproject.toml b/pyproject.toml index 854837f..a5ce4ed 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,5 +1,7 @@ [build-system] -requires = ["hatchling", "uv-dynamic-versioning"] +requires = ["hatchling", + "uv-dynamic-versioning", + "the-caddie"] build-backend = "hatchling.build" [project] @@ -11,19 +13,22 @@ authors = [ license = "MIT" license-files = ["LICENSE"] readme = "README.md" -requires-python = ">=3.9,<4.0" +requires-python = ">=3.10,<4.0" dynamic = ["version"] dependencies = [ - "linkml>=1.9.6", - "linkml-runtime >=1.9.4", + + "hatchling>=1.32.0", + "linkml>=1.11.0", + "linkml-runtime>=1.11.0", + "the-caddie", ] [dependency-groups] dev = [ - "linkml>=1.9.3", "mkdocs-material>=8.2.8", "mkdocs-mermaid2-plugin>=1.1.1", + "mkdocs-pymdownx-material-extras>=2.5.6", "jupyter>=1.0.0", "mknotebooks>= 0.8.0", ] @@ -38,12 +43,19 @@ source = "uv-dynamic-versioning" [tool.uv-dynamic-versioning] vcs = "git" style = "pep440" +pattern = "^v?(?P\\d+\\.\\d+\\.\\d+)" fallback-version = "0.0.0" # Ref.: https://docs.pytest.org/en/stable/reference/reference.html#configuration-options [tool.pytest.ini_options] testpaths = ["tests"] +# https://docs.astral.sh/ruff/configuration/ +[tool.ruff] +exclude = [ + "src/kf_access_model/_version.py", +] + # Ref.: https://github.com/codespell-project/codespell [tool.codespell] skip = [ @@ -59,9 +71,14 @@ skip = [ ignore-words-list = "linke" quiet-level = 3 +# Activate the hook +[tool.hatch.build.targets.wheel.hooks.caddie-sqla] + + # Ref.: https://github.com/crate-ci/typos (spell checker) [tool.typos.default.extend-words] linke = "linke" + [tool.typos.files] extend-exclude = [ "LICENSE", @@ -71,3 +88,6 @@ extend-exclude = [ "src/include_access_model/datamodel/include_access_model_pydantic.py", "src/include_access_model/datamodel/include_access_model.py", ] + +[tool.uv.sources] +the-caddie = { git = "https://github.com/carrollaboratory/the-caddie" } diff --git a/src/include_access_model/schema/include_access_model.yaml b/src/include_access_model/schema/include_access_model.yaml index 526b0ae..657dfa7 100644 --- a/src/include_access_model/schema/include_access_model.yaml +++ b/src/include_access_model/schema/include_access_model.yaml @@ -9,32 +9,83 @@ see_also: prefixes: includedcc: https://includedcc.org/include-access-model/ - cam: https://includedcc.org/common-access-model/ - linkml: https://w3id.org/linkml/ - schema: http://schema.org/ # subset of CDC Race and Ethnicity Code Set Version 1.0 cdc_race_eth: urn:oid:2.16.840.1.113883.6.238/ - hl7_null: http://terminology.hl7.org/CodeSystem/v3-NullFlavor/ ig_dob_method: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-date-of-birth-method/ igcondtype: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type/ ig2dac: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/ ig2dat: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-type/ ig2_biospecimen_availability: https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/biospecimen-availability/ snomed_ct: http://snomed.info/id/ - MONDO: http://purl.obolibrary.org/obo/MONDO_ - HP: http://purl.obolibrary.org/obo/HP_ - mesh: http://id.nlm.nih.gov/mesh/ - NCIT: http://purl.obolibrary.org/obo/NCIT_ - PATO: http://purl.obolibrary.org/obo/PATO_ - DUO: http://purl.obolibrary.org/obo/DUO_ - + cam: + prefix_prefix: cam + prefix_reference: https://includedcc.org/common-access-model/ + linkml: + prefix_prefix: linkml + prefix_reference: https://w3id.org/linkml/ + schema: + prefix_prefix: schema + prefix_reference: http://schema.org/ + CDCREC: + prefix_prefix: CDCREC + prefix_reference: urn:oid:2.16.840.1.113883.6.238/ + hl7_null: + prefix_prefix: hl7_null + prefix_reference: http://terminology.hl7.org/CodeSystem/v3-NullFlavor/ + snomedct: + prefix_prefix: snomedct + prefix_reference: http://snomed.info/id/ + MONDO: + prefix_prefix: MONDO + prefix_reference: http://purl.obolibrary.org/obo/MONDO_ + HP: + prefix_prefix: HP + prefix_reference: http://purl.obolibrary.org/obo/HP_ + mesh: + prefix_prefix: mesh + prefix_reference: http://id.nlm.nih.gov/mesh/ + NCIT: + prefix_prefix: NCIT + prefix_reference: http://purl.obolibrary.org/obo/NCIT_ + PATO: + prefix_prefix: PATO + prefix_reference: http://purl.obolibrary.org/obo/PATO_ + DUO: + prefix_prefix: DUO + prefix_reference: http://purl.obolibrary.org/obo/DUO_ + loinc: + prefix_prefix: loinc + prefix_reference: https://loinc.org/ + KIN: + prefix_prefix: KIN + prefix_reference: http://purl.org/ga4gh/kin.owl# + edam: + prefix_prefix: edam + prefix_reference: http://edamontology.org + OBI: + prefix_prefix: OBI + prefix_reference: http://purl.obolibrary.org/obo/OBI_ + MS: + prefix_prefix: MS + prefix_reference: http://purl.obolibrary.org/obo/MS_ + CHMO: + prefix_prefix: CHMO + prefix_reference: http://purl.obolibrary.org/obo/CHMO_ + NCBITaxon: + prefix_prefix: NCBITaxon + prefix_reference: http://purl.obolibrary.org/obo/NCBITaxon_ + xsd: + prefix_prefix: xsd + prefix_reference: http://www.w3.org/2001/XMLSchema# + shex: + prefix_prefix: shex + prefix_reference: http://www.w3.org/ns/shex# default_prefix: includedcc default_range: linkml:string imports: - - linkml:types - - common-access-model/src/common_access_model/schema/common_access_model + - upstream-models/common_access_model classes: IncludeParticipant: @@ -44,7 +95,7 @@ classes: slots: - down_syndrome_status -slots: +slots: down_syndrome_status: title: Down Syndrome Status description: Down Syndrome status of participant @@ -63,4 +114,3 @@ enums: title: T21 description: Trisomy 21 (Down syndrome) meaning: MONDO:0008608 - diff --git a/src/include_access_model/schema/upstream-models/common_access_model-0.0.7.yaml b/src/include_access_model/schema/upstream-models/common_access_model-0.0.7.yaml new file mode 100644 index 0000000..d8e321a --- /dev/null +++ b/src/include_access_model/schema/upstream-models/common_access_model-0.0.7.yaml @@ -0,0 +1,28720 @@ +name: common-access-model +description: LinkML Schema for the Common Access Model +title: Common Access Model +see_also: +- https://includedcc.github.io/common-access-model +id: https://includedcc.org/common-access-model +license: MIT +prefixes: + cam: + prefix_prefix: cam + prefix_reference: https://includedcc.org/common-access-model/ + linkml: + prefix_prefix: linkml + prefix_reference: https://w3id.org/linkml/ + schema: + prefix_prefix: schema + prefix_reference: http://schema.org/ + CDCREC: + prefix_prefix: CDCREC + prefix_reference: urn:oid:2.16.840.1.113883.6.238/ + hl7_null: + prefix_prefix: hl7_null + prefix_reference: http://terminology.hl7.org/CodeSystem/v3-NullFlavor/ + snomedct: + prefix_prefix: snomedct + prefix_reference: http://snomed.info/id/ + MONDO: + prefix_prefix: MONDO + prefix_reference: http://purl.obolibrary.org/obo/MONDO_ + HP: + prefix_prefix: HP + prefix_reference: http://purl.obolibrary.org/obo/HP_ + mesh: + prefix_prefix: mesh + prefix_reference: http://id.nlm.nih.gov/mesh/ + NCIT: + prefix_prefix: NCIT + prefix_reference: http://purl.obolibrary.org/obo/NCIT_ + PATO: + prefix_prefix: PATO + prefix_reference: http://purl.obolibrary.org/obo/PATO_ + DUO: + prefix_prefix: DUO + prefix_reference: http://purl.obolibrary.org/obo/DUO_ + loinc: + prefix_prefix: loinc + prefix_reference: https://loinc.org/ + KIN: + prefix_prefix: KIN + prefix_reference: http://purl.org/ga4gh/kin.owl# + edam: + prefix_prefix: edam + prefix_reference: http://edamontology.org + OBI: + prefix_prefix: OBI + prefix_reference: http://purl.obolibrary.org/obo/OBI_ + MS: + prefix_prefix: MS + prefix_reference: http://purl.obolibrary.org/obo/MS_ + CHMO: + prefix_prefix: CHMO + prefix_reference: http://purl.obolibrary.org/obo/CHMO_ + NCBITaxon: + prefix_prefix: NCBITaxon + prefix_reference: http://purl.obolibrary.org/obo/NCBITaxon_ + xsd: + prefix_prefix: xsd + prefix_reference: http://www.w3.org/2001/XMLSchema# + shex: + prefix_prefix: shex + prefix_reference: http://www.w3.org/ns/shex# +default_prefix: cam +default_range: string +types: + ptGlobalID: + name: ptGlobalID + description: Dewrangle pt global ID. For FHIR Patient Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + obGlobalID: + name: obGlobalID + description: Dewrangle ob global ID. For FHIR Observation Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + lsGlobalID: + name: lsGlobalID + description: Dewrangle ls global ID. For FHIR List Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + orGlobalID: + name: orGlobalID + description: Dewrangle or global ID. For FHIR Organization Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + grGlobalID: + name: grGlobalID + description: Dewrangle gr global ID. For FHIR Group Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + sdGlobalID: + name: sdGlobalID + description: Dewrangle sd global ID. For FHIR ResearchStudy Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + deGlobalID: + name: deGlobalID + description: Dewrangle de global ID. For FHIR Device Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + bsGlobalID: + name: bsGlobalID + description: Dewrangle bs global ID. For FHIR Specimen Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + adGlobalID: + name: adGlobalID + description: Dewrangle ad global ID. For FHIR ActivityDefinition Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + drGlobalID: + name: drGlobalID + description: Dewrangle dr global ID. For FHIR DocumentReference Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + enGlobalID: + name: enGlobalID + description: Dewrangle en global ID. For FHIR Encounter Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + coGlobalID: + name: coGlobalID + description: Dewrangle co global ID. For FHIR Consent Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + diGlobalID: + name: diGlobalID + description: Dewrangle di global ID. For FHIR Diagnostic Report Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + fmGlobalID: + name: fmGlobalID + description: Dewrangle __ global ID. For FHIR FamilyMemberHistory Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + pdGlobalID: + name: pdGlobalID + description: Dewrangle __ global ID. For FHIR PlanDefinition Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + msGlobalID: + name: msGlobalID + description: Dewrangle __ global ID. For FHIR MedicationStatement Resources. + from_schema: https://includedcc.org/common-access-model + base: str + uri: xsd:string + string: + name: string + description: A character string + notes: + - In RDF serializations, a slot with range of string is treated as a literal or + type xsd:string. If you are authoring schemas in LinkML YAML, the type is referenced + with the lower case "string". + from_schema: https://w3id.org/linkml/types + exact_mappings: + - schema:Text + base: str + uri: xsd:string + integer: + name: integer + description: An integer + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "integer". + from_schema: https://w3id.org/linkml/types + exact_mappings: + - schema:Integer + base: int + uri: xsd:integer + boolean: + name: boolean + description: A binary (true or false) value + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "boolean". + from_schema: https://w3id.org/linkml/types + exact_mappings: + - schema:Boolean + base: Bool + uri: xsd:boolean + repr: bool + float: + name: float + description: A real number that conforms to the xsd:float specification + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "float". + from_schema: https://w3id.org/linkml/types + exact_mappings: + - schema:Float + base: float + uri: xsd:float + double: + name: double + description: A real number that conforms to the xsd:double specification + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "double". + from_schema: https://w3id.org/linkml/types + close_mappings: + - schema:Float + base: float + uri: xsd:double + decimal: + name: decimal + description: A real number with arbitrary precision that conforms to the xsd:decimal + specification + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "decimal". + from_schema: https://w3id.org/linkml/types + broad_mappings: + - schema:Number + base: Decimal + uri: xsd:decimal + time: + name: time + description: A time object represents a (local) time of day, independent of any + particular day + notes: + - URI is dateTime because OWL reasoners do not work with straight date or time + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "time". + from_schema: https://w3id.org/linkml/types + exact_mappings: + - schema:Time + base: XSDTime + uri: xsd:time + repr: str + date: + name: date + description: a date (year, month and day) in an idealized calendar + notes: + - URI is dateTime because OWL reasoners don't work with straight date or time + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "date". + from_schema: https://w3id.org/linkml/types + exact_mappings: + - schema:Date + base: XSDDate + uri: xsd:date + repr: str + datetime: + name: datetime + description: The combination of a date and time + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "datetime". + from_schema: https://w3id.org/linkml/types + exact_mappings: + - schema:DateTime + base: XSDDateTime + uri: xsd:dateTime + repr: str + date_or_datetime: + name: date_or_datetime + description: Either a date or a datetime + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "date_or_datetime". + from_schema: https://w3id.org/linkml/types + base: str + uri: linkml:DateOrDatetime + repr: str + uriorcurie: + name: uriorcurie + description: a URI or a CURIE + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "uriorcurie". + from_schema: https://w3id.org/linkml/types + base: URIorCURIE + uri: xsd:anyURI + repr: str + curie: + name: curie + conforms_to: https://www.w3.org/TR/curie/ + description: a compact URI + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "curie". + comments: + - in RDF serializations this MUST be expanded to a URI + - in non-RDF serializations MAY be serialized as the compact representation + from_schema: https://w3id.org/linkml/types + base: Curie + uri: xsd:string + repr: str + uri: + name: uri + conforms_to: https://www.ietf.org/rfc/rfc3987.txt + description: a complete URI + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "uri". + comments: + - in RDF serializations a slot with range of uri is treated as a literal or type + xsd:anyURI unless it is an identifier or a reference to an identifier, in which + case it is translated directly to a node + from_schema: https://w3id.org/linkml/types + close_mappings: + - schema:URL + base: URI + uri: xsd:anyURI + repr: str + ncname: + name: ncname + description: Prefix part of CURIE + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "ncname". + from_schema: https://w3id.org/linkml/types + base: NCName + uri: xsd:string + repr: str + objectidentifier: + name: objectidentifier + description: A URI or CURIE that represents an object in the model. + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "objectidentifier". + comments: + - Used for inheritance and type checking + from_schema: https://w3id.org/linkml/types + base: ElementIdentifier + uri: shex:iri + repr: str + nodeidentifier: + name: nodeidentifier + description: A URI, CURIE or BNODE that represents a node in a model. + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "nodeidentifier". + from_schema: https://w3id.org/linkml/types + base: NodeIdentifier + uri: shex:nonLiteral + repr: str + jsonpointer: + name: jsonpointer + conforms_to: https://datatracker.ietf.org/doc/html/rfc6901 + description: A string encoding a JSON Pointer. The value of the string MUST conform + to JSON Point syntax and SHOULD dereference to a valid object within the current + instance document when encoded in tree form. + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "jsonpointer". + from_schema: https://w3id.org/linkml/types + base: str + uri: xsd:string + repr: str + jsonpath: + name: jsonpath + conforms_to: https://www.ietf.org/archive/id/draft-goessner-dispatch-jsonpath-00.html + description: A string encoding a JSON Path. The value of the string MUST conform + to JSON Point syntax and SHOULD dereference to zero or more valid objects within + the current instance document when encoded in tree form. + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "jsonpath". + from_schema: https://w3id.org/linkml/types + base: str + uri: xsd:string + repr: str + sparqlpath: + name: sparqlpath + conforms_to: https://www.w3.org/TR/sparql11-query/#propertypaths + description: A string encoding a SPARQL Property Path. The value of the string + MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects + within the current instance document when encoded as RDF. + notes: + - If you are authoring schemas in LinkML YAML, the type is referenced with the + lower case "sparqlpath". + from_schema: https://w3id.org/linkml/types + base: str + uri: xsd:string + repr: str +enums: + EnumAssayType: + name: EnumAssayType + description: Type of assays performed + from_schema: https://includedcc.org/common-access-model/EnumAssayType + permissible_values: + OBI:0000070: + text: OBI:0000070 + description: assay + meaning: OBI:0000070 + title: assay + CHMO:0000087: + text: CHMO:0000087 + description: Any type of light microscopy assay where the specimen can be + made to fluoresce (emit energy as visible light) by illuminating it with + light of specific wavelengths. These specimens are called fluorophores. + meaning: CHMO:0000087 + title: fluorescence microscopy assay + CHMO:0000089: + text: CHMO:0000089 + description: Microscopy where the specimen can be made to fluoresce (emit + energy as visible light) by scanning a gas (Ar or Kr) laser spot of specific + wavelength over its surface and using a spatial pinhole to eliminate out-of-focus + fluorescence. + meaning: CHMO:0000089 + title: confocal fluorescence microscopy assay + CHMO:0000102: + text: CHMO:0000102 + description: Microscopy where the specimen is illuminated with visible light + and a system of lenses is used to produce an image. + meaning: CHMO:0000102 + title: light microscopy assay + CHMO:0000701: + text: CHMO:0000701 + description: A method where a sample mixture is first separated by liquid + chromatography before being ionised and characterised by mass-to-charge + ratio and relative abundance using two mass spectrometers in series. + meaning: CHMO:0000701 + title: liquid chromatography-tandem mass spectrometry + OBI:0000117: + text: OBI:0000117 + description: An assay where the output data is a datum with one of two values + denoting success and failure. + meaning: OBI:0000117 + title: Bernoulli trial + OBI:0000182: + text: OBI:0000182 + description: A 3D molecular structure determination assay that uses magnetic + properties of atomic nuclei to determine the 3D structure and dynamics of + molecules in the input sample. + meaning: OBI:0000182 + title: NMR 3D molecular structure determination assay + OBI:0000185: + text: OBI:0000185 + description: An assay that produces a picture of an entity. + meaning: OBI:0000185 + title: imaging assay + OBI:0000201: + text: OBI:0000201 + description: An assay that measures the amount of radiation in the radioactive + spectrum (alpha, beta or gamma rays) emitted from an input material. + meaning: OBI:0000201 + title: radioactivity detection + OBI:0000288: + text: OBI:0000288 + description: An assay that determines interactions between proteins, such + as protein-protein binding. + meaning: OBI:0000288 + title: protein-protein interaction detection assay + OBI:0000291: + text: OBI:0000291 + description: An assay tthat determines DNA regions specifically recognized + by proteins that function as transcription factors + meaning: OBI:0000291 + title: transcription factor binding site assay + OBI:0000366: + text: OBI:0000366 + description: An assay that detects and identifies chemical entities resulting + from biochemical and cellular metabolism + meaning: OBI:0000366 + title: metabolite profiling assay + OBI:0000418: + text: OBI:0000418 + description: An assay that determines the concentration of glucose molecules + in a blood serum sample + meaning: OBI:0000418 + title: measuring glucose concentration in blood serum assay + OBI:0000424: + text: OBI:0000424 + description: An assay that determines gene expression and transcription activity + using ribonucleic acids collected from a material entity. + meaning: OBI:0000424 + title: transcription profiling assay + OBI:0000433: + text: OBI:0000433 + description: An assay with the objective to determine a sequence feature of + DNA + meaning: OBI:0000433 + title: DNA sequence feature detection assay + OBI:0000435: + text: OBI:0000435 + description: An assay which generates data about a genotype from a specimen + of genomic DNA. A variety of techniques and instruments can be used to produce + information about sequence variation at particular genomic positions. + meaning: OBI:0000435 + title: genotyping assay + OBI:0000438: + text: OBI:0000438 + description: An assay that measures changes (expansion, amplification, deletion, + mutation) in the sequence of a DNA molecule. + meaning: OBI:0000438 + title: DNA sequence variation detection assay + OBI:0000443: + text: OBI:0000443 + description: An assay with the objective to capture information about the + presence, concentration, or amount of an analyte in an evaluant. + meaning: OBI:0000443 + title: analyte assay + OBI:0000445: + text: OBI:0000445 + description: An assay that determines the mass of an evaluant + meaning: OBI:0000445 + title: mass measurement assay + OBI:0000447: + text: OBI:0000447 + description: An electrophysiology assay where the recording location of the + electrode is intracellular. + meaning: OBI:0000447 + title: intracellular electrophysiology recording assay + OBI:0000454: + text: OBI:0000454 + description: An electrophysiology assay where the recording location of the + electrode is extracellular. + meaning: OBI:0000454 + title: extracellular electrophysiology recording assay + OBI:0000470: + text: OBI:0000470 + description: An assay that identifies the amount and type of material entities + present in a sample by fragmenting the sample and measuring the mass-to-charge + ratio of the resulting particles. + meaning: OBI:0000470 + title: mass spectrometry assay + OBI:0000520: + text: OBI:0000520 + description: An analyte assay which uses analytical methods to produce measurements + and data on the concentration of chemical parameters (analytes) present + in a specimen collected from an organism in order to determine a phenotype + of that organism. + meaning: OBI:0000520 + title: clinical chemistry assay + OBI:0000537: + text: OBI:0000537 + description: An assay that determines lost or amplified genomic regions of + DNA by comparing genomic DNA originating from tissues from the same or different + individuals using specific techniques such as CGH, array CGH, SNP genotyping + meaning: OBI:0000537 + title: copy number variation profiling assay + OBI:0000615: + text: OBI:0000615 + description: An assay that determines protein expression and translation activity + using protein extracts collected from a material entity. + meaning: OBI:0000615 + title: protein expression profiling assay + OBI:0000623: + text: OBI:0000623 + description: An assay that exploits the magnetic properties of certain nuclei + (those with a spin) to resonate when placed in particular magnetic field + conditions. Instruments recording NMR spectrum and sets of analysis can + be used to deduce identity of chemical as well as composition of complex + chemical mixtures. + meaning: OBI:0000623 + title: NMR spectroscopy assay + OBI:0000626: + text: OBI:0000626 + description: A sequencing assay which determines information on the sequence + of a DNA molecule. + meaning: OBI:0000626 + title: DNA sequencing assay + OBI:0000630: + text: OBI:0000630 + description: An assay that studies phenotypes of an organism involving its + blood and blood producing organs using a variety of techniques and instruments + meaning: OBI:0000630 + title: hematology assay + OBI:0000634: + text: OBI:0000634 + description: An assay that measures the state of methylation of DNA molecules + using genomic DNA collected from a material entity using a range of techniques + and instrument such as DNA sequencers and often relying on treatment with + bisulfites to ensure cytosine conversion. + meaning: OBI:0000634 + title: DNA methylation profiling assay + OBI:0000661: + text: OBI:0000661 + description: An analyte assay where binding of an enzyme linked antibody to + a material entity that is immobilized on solid support is detected utilizing + a chemiluminescent reaction. Depending on the setup, the enzyme-linked antibody + could be binding directly to the analyte, or it serves as a secondary antibody + detecting binding of the primary antibody to the analyte. + meaning: OBI:0000661 + title: enzyme-linked immunosorbent assay + OBI:0000664: + text: OBI:0000664 + description: A cell proliferation assay in which cells are cultured in the + presence of BrdU which is incorporated into newly synthesized DNA of replicating + cells (during the S phase of the cell cycle), substituting for thymidine + during DNA replication, which can be quantified by BrdU specific antibodies. + meaning: OBI:0000664 + title: BrdU incorporation assay + OBI:0000669: + text: OBI:0000669 + description: A cell proliferation assay in which cells are cultured in the + presence of tritiated thymidine which is incorporated into newly synthesized + DNA of replicating cells (during the S phase of the cell cycle). The radioactivity + of tritiated thymidine in a cell is a proxy for cells that were actively + replicating. + meaning: OBI:0000669 + title: tritiated thymidine incorporation assay + OBI:0000693: + text: OBI:0000693 + description: A DNA methylation profiling assay that identifies methylated + sites in genomic DNA and determines the methylation pattern that affect + gene transcription using immunoprecipitation of methylated genomic DNA, + creation of a library of corresponding DNA fragments (either single or paired-end + fragments) and subsequent sequencing using parallelized sequencing methods. + meaning: OBI:0000693 + title: MeDIP-seq assay + OBI:0000695: + text: OBI:0000695 + description: A DNA sequencing assay which rely on the use of dideoxynucleotides + used in 4 distinct sequencing reaction on the same DNA sample. The dideoxynucleotides, + once incorporated in the complementary DNA strand being synthesized by the + DNA polymerase prevent any further chain elongation. The newly generated + sequences are resolved on a polyacrylamide gel using electrophoresis and + labels (either fluorochrome or radioactivity) are used to determine the + nucleotide present at a given position + meaning: OBI:0000695 + title: chain termination sequencing assay + OBI:0000697: + text: OBI:0000697 + description: A DNA sequencing by synthesis assay that identifiies the sequnece + of billions of DNA molecules immobilized to a surface using DNA polymerase + and fluorescently labeled nucleotides added one at a time. The sequencing + process does not require an amplification step and is typically able to + produce reads of 25 base pair length. + meaning: OBI:0000697 + title: Helicos sequencing assay + OBI:0000699: + text: OBI:0000699 + description: An assay that measures the occurrence of death events in one + or more organisms over time + meaning: OBI:0000699 + title: survival assessment assay + OBI:0000705: + text: OBI:0000705 + description: A sequencing assay in which the amino acid sequence of input + peptides or proteins is determined by iteratively cleaving of the amino-terminal + (N-terminal) residue without disrupting the peptide bonds and identifying + it by e.g. chromatography or electropheresis. + meaning: OBI:0000705 + title: Edman degradation + OBI:0000706: + text: OBI:0000706 + description: A DNA sequencing by ligation assay that identifies sequence information + using primers to hybridize to the P1 adapter sequence within the library + template, fluorescently labeled di-base probes to compete for ligation to + the sequencing primer, multiple cycles of ligation, detection and cleavage + to determine the eventual read length, following a series of ligation cycles, + the extension product is removed and the template is reset with a primer + complementary to the n-1 position for a second round of ligation cycles. + meaning: OBI:0000706 + title: SOLiD sequencing assay + OBI:0000716: + text: OBI:0000716 + description: An assay in which chromatin is immunoprecipitated and subsequently + analyzed using a DNA sequencing step to identify which parts of DNA are + part of the isolated chromatin + meaning: OBI:0000716 + title: ChIP-seq assay + OBI:0000721: + text: OBI:0000721 + description: An assay that measures glucose clearance from blood over time + by repeated glucose measurement in blood serum or plasma after the administration + of a glucose bolus in-vivo. This assay can be used to evaluate the severity + of insulin resistance or the efficiency of glucose clearance. + meaning: OBI:0000721 + title: glucose tolerance test + OBI:0000723: + text: OBI:0000723 + description: A DNA sequencing assay that performs chain extension during the + sequencing reaction step using DNA ligase + meaning: OBI:0000723 + title: DNA sequencing by ligation assay + OBI:0000724: + text: OBI:0000724 + description: A DNA sequencing by synthesis assay that identifies sequence + information using DNA polymerase and reversible terminator, requiring immobilization + of genomic DNA fragments onto a surface and a specific clonal amplification + step known as bridge PCR. Reliance on a reversible terminator allows cycles + of DNA chain extension by DNA polymerase and imaging without the need of + electrophoretic separation of newly synthesized DNA fragment as with Sanger + sequencing. + meaning: OBI:0000724 + title: Solexa sequencing assay + OBI:0000730: + text: OBI:0000730 + description: A DNA sequencing by synthesis assay which sequences a single + strand of DNA by synthesizing the complementary strand along it, one base + pair at a time, and detecting which base was actually added at each step. + The template DNA is immobilized, and solutions of A, C, G, and T nucleotides + are added and removed after the reaction, sequentially. Light is produced + only when the nucleotide solution complements the first unpaired base of + the template. The sequence of solutions which produce chemiluminescent signals + allows the determination of the sequence of the template. ssDNA template + is hybridized to a sequencing primer and incubated with the enzymes DNA + polymerase, ATP sulfurylase, luciferase and apyrase, and with the substrates + adenosine 5-prime phosphosulfate (APS) and luciferin. + meaning: OBI:0000730 + title: pyrosequencing assay + OBI:0000734: + text: OBI:0000734 + description: A DNA sequencing assay that relies on DNA polymerase activity + to perform chain extension during the sequencing reaction step. + meaning: OBI:0000734 + title: DNA sequencing by synthesis assay + OBI:0000743: + text: OBI:0000743 + description: An assay that determines information about an immune response + meaning: OBI:0000743 + title: immune response assay + OBI:0000748: + text: OBI:0000748 + description: A DNA methylation profiling assay which determines the methylation + status of genomic DNA using DNA sequencing techniques preceded by a bisulfite + based chemical modification of genomic DNA at CpG island location. + meaning: OBI:0000748 + title: bisulfite sequencing assay + OBI:0000787: + text: OBI:0000787 + description: An assay that measures the amount of antithrombin III in blood. + meaning: OBI:0000787 + title: human antithrombin-III in blood assay + OBI:0000802: + text: OBI:0000802 + description: An assay that measures the prothrombin ratio, which is the prothrombin + time for a patient, divided by the result for control plasma. Most commonly + the test is preformed using blood plasma. Blood is drawn into a test tube + containing liquid citrate, which acts as an anticoagulant. An excess of + calcium is added to enable the blood to clot again.Tissue factor (also known + as factor III or thromboplastin) is added, and the time the sample takes + to clot is measured optically as the prothrombin time, which is compared + to a control sample. + meaning: OBI:0000802 + title: prothrombin time assay + OBI:0000805: + text: OBI:0000805 + description: An antithrombin-III (AT-III) assay in which exogenous bovine + thrombin and heparin are added to test plasma to form a thrombin-heparin-AT + complex. The residual thrombin not bound then hydrolyzes the p-nitroalanine + substrate to produce a yellow color, which is read at 405 nm. The intensity + of color produced is inversely proportional to the AT present. A calibration + is done with standard human plasma reagent and results for a given specimen + are reported as a percentage relative to the standard + meaning: OBI:0000805 + title: antithrombin-III berichrome assay + OBI:0000808: + text: OBI:0000808 + description: An assay that quantitatively measures heparin in human plasma + using Factor Xa and Antithrombin III in excess, where the rate of Factor + Xa inhibition is directly proportional to the heparin concentration. The + residual Factor Xa activity, measured with a Factor Xa-specific chromogenic + substrate, is inversely proportional to the heparin concentration. + meaning: OBI:0000808 + title: spectrolyse heparin antifactor-Xa assay + OBI:0000812: + text: OBI:0000812 + description: An assay that measures neural activity in the caudate nucleus + meaning: OBI:0000812 + title: measuring neural activity in the caudate nucleus assay + OBI:0000820: + text: OBI:0000820 + description: An assay that evaluates blood coagulation by measuring the time + required for the appearance of fibrin strands following the mixing blood + or plasma with phospholipid platelet substitute (e.g., crude cephalins, + soybean phosphatides). It is a test of the intrinsic pathway (factors VIII, + IX, XI, and XII) and the common pathway (fibrinogen, prothrombin, factors + V and X) of blood coaguation . It is used as a screening test and to monitor + heparin therapy. + meaning: OBI:0000820 + title: activated partial thromboplastin time assay + OBI:0000823: + text: OBI:0000823 + description: An assay that measures the time between the addition of the thrombin + and the clot formation in plasma. + meaning: OBI:0000823 + title: thrombin time assay + OBI:0000854: + text: OBI:0000854 + description: An analyte assay that detects specific peptides in an input material + by separating it using gel electrophoresis, transfering the separated molecules + to a membrane, and staining them with_ antibodies specific to the analyte + molecules. + meaning: OBI:0000854 + title: western blot assay + OBI:0000860: + text: OBI:0000860 + description: An assay that determines the presence of gene transcripts by + hybridizing labeled RNA or DNA probes against messenger RNAs isolated from + tissue or cell cultures, resolved on denaturing gel, transfered by a blotting + procedure to a solid support. Detection of hybridization signals is carried + out by immunofluorescence or radioactivity measurements using photographic + films or digital imaging devices such as Phosphor Imager. + meaning: OBI:0000860 + title: northern blot assay + OBI:0000865: + text: OBI:0000865 + description: A serum neutralization of viral infectivity assay which is performed + in a 96-well plate. + meaning: OBI:0000865 + title: 96-well neutralization assay + OBI:0000870: + text: OBI:0000870 + description: An assay that provides information about the secondary structure + of nucleic acids using chemical or enzymatic probing to establish the extent + of base-pairing or solvent accessiblity. + meaning: OBI:0000870 + title: single-nucleotide-resolution nucleic acid structure mapping assay + OBI:0000871: + text: OBI:0000871 + description: An assay that quantifies viruses by their hemagglutination activity. + meaning: OBI:0000871 + title: viral hemagglutination assay + OBI:0000872: + text: OBI:0000872 + description: An analyte assay that measures virus-neutralizing abilities of + different sera. Different dilutions of serum are mixed with virus and used + to infect cells. At the lower dilutions, antibodies will block infection, + but at higher dilutions, there will be too few antibodies to have an effect.The + neutralization titer is expressed as the reciprocal of the highest dilution + at which virus infection is blocked. + meaning: OBI:0000872 + title: serum neutralization of viral infectivity assay + OBI:0000874: + text: OBI:0000874 + description: An analyte assay in which a specified input material (the evaluant) + is examined for the presence or quantity of specified nucleic acid polymers, + which are identified based on the use of complementary nucleic acid probes. + meaning: OBI:0000874 + title: detection of specific nucleic acid polymers with complementary probes + OBI:0000875: + text: OBI:0000875 + description: An assay that measures the ability of an evaluant to inhibit + hemagglutination by a virus. Hemagglutinin is a viral protein which binds + to sialic acid receptors on cells or to erythrocytes, causing the cells + to clump. Loss of clumping indicates that the evaluant blocks binding of + hemagglutinin to sialic acid receptors. + meaning: OBI:0000875 + title: viral hemagglutination inhibition assay + OBI:0000882: + text: OBI:0000882 + description: A cytometry assay that monitors a cell population to track how + many are killed by other cells. + meaning: OBI:0000882 + title: cell-cell killing assay + OBI:0000883: + text: OBI:0000883 + description: A cell killing assay that measures if and how many target cells + are killed within an organism. + meaning: OBI:0000883 + title: in vivo cell killing assay + OBI:0000891: + text: OBI:0000891 + description: A cytometry assay which measures the degreee to which input cells + are replicating. + meaning: OBI:0000891 + title: cell proliferation assay + OBI:0000892: + text: OBI:0000892 + description: An analyte assay that detects the presence of a specific sequence + in a DNA sample, which has been digested by restriction enzymes, resolved + by gel electrophoresis, and blotted to a solid support, followed by hybridization + of a probe raised against a specific sequence and detected with fluorescence + or radioactivity. + meaning: OBI:0000892 + title: Southern blot assay + OBI:0000893: + text: OBI:0000893 + description: An assay, based on the PCR, that amplifies and simultaneously + quantifies a specific DNA molecule based on the use of complementary probes/primers. + It enables both detection and quantification (as absolute number of copies + or relative amount when normalized to DNA input or additional normalizing + genes) of one or more specific sequences in a DNA sample. + meaning: OBI:0000893 + title: real time polymerase chain reaction assay + OBI:0000897: + text: OBI:0000897 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay which determines nucleic acid secondary structure at a nucleotide + resolution scale using DEPC as reagent and chemical probe + meaning: OBI:0000897 + title: DEPC structure mapping assay + OBI:0000903: + text: OBI:0000903 + description: A cell killing assay that measures if and how many target cells + are actively killed by other cells in a cell culture. + meaning: OBI:0000903 + title: in vitro cell killing assay + OBI:0000904: + text: OBI:0000904 + description: An analyte assay in which a cell line whose growth is known to + be affected by the presence of a specific type of material (the anlyte) + is cultured in the presence of an input material (the evaluant) in order + to detect presence of the analyte in the evaluant. + meaning: OBI:0000904 + title: reporter cell line analyte detection bioassay + OBI:0000910: + text: OBI:0000910 + description: An assay in which a radioactive labeled antigen or antibody is + used to determine the interaction between an antigen and its receptor. This + can be used to detect the presence of an antigen of interest in an input + sample or determine the specificity of an input antibody. + meaning: OBI:0000910 + title: radio immuno assay + OBI:0000911: + text: OBI:0000911 + description: An assay that uses a reverse transcription step (an RNA strand + is reverse transcribed into its DNA complement using the enzyme reverse + transcriptase) before a PCR assay. + meaning: OBI:0000911 + title: real time reverse-transcription polymerase chain reaction assay + OBI:0000912: + text: OBI:0000912 + description: A 3D molecular structure determination assay in which the diffraction + of pattern of X-ray beams in a crystal of purified material entities is + used to resolve the 3-dimensional structure of the material entity of interest. + meaning: OBI:0000912 + title: X-ray crystallography 3D molecular structure determination assay + OBI:0000913: + text: OBI:0000913 + description: An assay in which the activity of a promoter in a cell is monitored + by using a reporter gene that was inserted in a genomic location under control + of the promoter and whose expression can be easily detected based on qualities + or functions of the gene. + meaning: OBI:0000913 + title: promoter activity detection by reporter gene assay + OBI:0000916: + text: OBI:0000916 + description: A cytometry assay in which an input cell population is put in + solution, is passed by a laser, and optical sensors are used to detect scattering + of the laser light and/or fluorescence of specific markers to count and + characterize the particles in solution. + meaning: OBI:0000916 + title: flow cytometry assay + OBI:0000920: + text: OBI:0000920 + description: An analyte assay in which a series of beads coated with antibodies, + antigens, or other small molecules are used to detect an analyte of interest. + meaning: OBI:0000920 + title: cytometric bead array assay + OBI:0000923: + text: OBI:0000923 + description: A binding assay that uses the detection of electromagnetic waves + in a surface to detect material entities adsorbed to the surface, which + change the local optical index of refraction. + meaning: OBI:0000923 + title: surface plasmon resonance binding assay + OBI:0000944: + text: OBI:0000944 + description: An assay that measures the unequal distribution of fine motor + skill between the left and right hands typically in human subjects by means + of some questionnaire and scoring procedure. + meaning: OBI:0000944 + title: handedness assay + OBI:0000957: + text: OBI:0000957 + description: An assay where a person makes a statement that indicates what + handedness he has from a choice of different categories. + meaning: OBI:0000957 + title: self reported handedness assessment + OBI:0000964: + text: OBI:0000964 + description: An assay in which a measurement is made by observing entities + located in a live cell. + meaning: OBI:0000964 + title: in live cell assay + OBI:0000966: + text: OBI:0000966 + description: An assay in which a measurement is made by observing entities + located in an organism. + meaning: OBI:0000966 + title: in live organism assay + OBI:0000975: + text: OBI:0000975 + description: A binding assay which uses a flow cytometer to detect pairs of + cells that are bound to each other by staining them with different fluorescent + labels. + meaning: OBI:0000975 + title: cell-cell binding detection by flow cytometry assay + OBI:0000978: + text: OBI:0000978 + description: An assay in which a measurement is made by observing entities + located in a container. + meaning: OBI:0000978 + title: in container assay + OBI:0001001: + text: OBI:0001001 + description: An assay that uses a set of questions (the Edinburgh Handedness + inventory) to generate a score that can be used to assess the dominance + of a person's right or left hand in everyday activities. The inventory can + be used by an observer assessing the person, or by a person self-reporting + hand use. The latter method tends to be less reliable due to a person over-attributing + tasks to the dominant hand. + meaning: OBI:0001001 + title: Edinburgh handedness assay + OBI:0001005: + text: OBI:0001005 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using RNAse CL3 as reagent and enzymatic probe. + meaning: OBI:0001005 + title: RNASE CL3 structure mapping assay + OBI:0001006: + text: OBI:0001006 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay which uses CMCT as reagent and chemical probe to generate data and + information at nucleotide resolution scale contributing to the determination + of nucleic acid secondary structure + meaning: OBI:0001006 + title: CMCT structure mapping assay + OBI:0001008: + text: OBI:0001008 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using Fe-MP as reagent and chemical probe. + meaning: OBI:0001008 + title: MPE-Fe(II) structure mapping assay + OBI:0001011: + text: OBI:0001011 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines the secondary structure of a nucleic acid at the nucleotide + resolution scale which uses ENU as reagent and chemical probe + meaning: OBI:0001011 + title: ENU structure mapping assay + OBI:0001012: + text: OBI:0001012 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using RNAse V1 as reagent and enzymatic probe + meaning: OBI:0001012 + title: RNASE V1 structure mapping assay + OBI:0001013: + text: OBI:0001013 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines nucleic acid secondary structure at nucleotide resolution + scale using kethoxal as reagent and chemical probe + meaning: OBI:0001013 + title: kethoxal structure mapping assay + OBI:0001014: + text: OBI:0001014 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines structural information about the RNA species under + study using proteins acting as enzymatic probes. + meaning: OBI:0001014 + title: single-nucleotide-resolution nucleic acid structure mapping assay using + enzymatic probing + OBI:0001015: + text: OBI:0001015 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay which determins nucleic acid secondary structure at a nucleotide resolution + scale using DMS as reagent and chemical probe + meaning: OBI:0001015 + title: DMS structure mapping assay + OBI:0001016: + text: OBI:0001016 + description: A single-nucleotide-resolution deoxyribonucleic acid structure + mapping assay which uses DNAse 1 as reagent and enzymatic probe to generate + data and information at nucleotide resolution scale contributing to the + determination of nucleic acid secondary structure + meaning: OBI:0001016 + title: DNASE 1 structure mapping assay + OBI:0001017: + text: OBI:0001017 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines structural information about the RNA species under + study using small chemical compounds acting as chemical probes. + meaning: OBI:0001017 + title: single-nucleotide-resolution nucleic acid structure mapping assay using + chemical probing + OBI:0001018: + text: OBI:0001018 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using Rhodium as reagent and chemical probe. + meaning: OBI:0001018 + title: Rhodium DNA structure mapping assay + OBI:0001019: + text: OBI:0001019 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using RNA adenosine deaminase I as reagent and enzymatic probe. + meaning: OBI:0001019 + title: RNA ADA I RNA structure mapping assay + OBI:0001020: + text: OBI:0001020 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines nucleic acid secondary structure at nucleotide resolution + scale using lead as reagent and chemical probe + meaning: OBI:0001020 + title: Lead structure mapping assay + OBI:0001021: + text: OBI:0001021 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using RNAse T2 as reagent and enzymatic probe + meaning: OBI:0001021 + title: RNASE T2 structure mapping assay + OBI:0001022: + text: OBI:0001022 + description: An assay that measures changes in phenotype due to increased + or decreased dosage of a single allele of a gene. + meaning: OBI:0001022 + title: gene dosage assay + OBI:0001023: + text: OBI:0001023 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic secondary structure at a nucleotide resolution + scale using Fe-BABE as reagent and chemical probe. + meaning: OBI:0001023 + title: Fe-BABE RNA structure mapping assay + OBI:0001024: + text: OBI:0001024 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using RNAase U2 as reagent and enzymatic probe + meaning: OBI:0001024 + title: RNASE U2 structure mapping assay + OBI:0001025: + text: OBI:0001025 + description: A binding assay where the specified output is a binding constant + meaning: OBI:0001025 + title: binding constant determination assay + OBI:0001026: + text: OBI:0001026 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using NMIA as reagent and chemical probe + meaning: OBI:0001026 + title: NMIA RNA structure mapping assay + OBI:0001027: + text: OBI:0001027 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using Terbium as reagent and chemical probe + meaning: OBI:0001027 + title: Terbium RNA structure mapping assay + OBI:0001029: + text: OBI:0001029 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay hat determines nucleic acid secondary structure at a nucleotide resolution + scale using hydroxyl radical as reagent and chemical probe + meaning: OBI:0001029 + title: OH-radical structure mapping assay + OBI:0001030: + text: OBI:0001030 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale uses RNAse T1 as reagent and enzymatic probe. + meaning: OBI:0001030 + title: RNASE T1 structure mapping assay + OBI:0001035: + text: OBI:0001035 + description: A single-nucleotide-resolution deoxyribonucleic acid structure + mapping assay that determines nucleic acid secondary structure at a nucleotide + resolution scale using DNAse 1 as reagent and enzymatic probe. + meaning: OBI:0001035 + title: Nuclease S1 structure mapping assay + OBI:0001038: + text: OBI:0001038 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using Rhutenium as reagent and chemical probe + meaning: OBI:0001038 + title: Ruthenium structure mapping assay + OBI:0001039: + text: OBI:0001039 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at nucleotide resolution + scale using intromolecular reactivity + meaning: OBI:0001039 + title: inline probing RNA structure mapping assay + OBI:0001145: + text: OBI:0001145 + description: A 3D molecular structure determination assay in which a complex + of 2 or more molecular enties is characterized which provides information + on their binding configuration. + meaning: OBI:0001145 + title: 3D structure determination of bound molecular complex assay + OBI:0001146: + text: OBI:0001146 + description: An assay with the objective to characterize the disposition of + two or more material entities to form a complex. + meaning: OBI:0001146 + title: binding assay + OBI:0001158: + text: OBI:0001158 + description: An assay that determines the duration of part of the life of + an organism, where the initial time point is the beginning of some transitional + state (such as birth or when planted). + meaning: OBI:0001158 + title: age determination assay + OBI:0001170: + text: OBI:0001170 + description: An assay that determines the concentration of RNA in a sample + in which an RNA strand is first reverse transcribed into its DNA complement + (complementary DNA, or cDNA) using the enzyme reverse transcriptase, and + the resulting cDNA is amplified using traditional or real-time PCR. + meaning: OBI:0001170 + title: reverse transcription polymerase chain reaction assay + OBI:0001177: + text: OBI:0001177 + description: An assay that determines the sequence of an RNA molecule. + meaning: OBI:0001177 + title: RNA sequencing assay + OBI:0001178: + text: OBI:0001178 + description: An assay that tests if inducing an epitope specific immune response + in an organism has an effect, such as the ability to prevent, treat or exacerbate + diseases in the organism. + meaning: OBI:0001178 + title: efficacy of epitope intervention experiment + OBI:0001179: + text: OBI:0001179 + description: An epitope protection experiment in which the ability of the + epitope to protect the host from an infection is assessed. + meaning: OBI:0001179 + title: epitope protection from infectious challenge experiment + OBI:0001183: + text: OBI:0001183 + description: An epitope protection experiment in which the ability of the + epitope to protect the host from developing tumors is assessed. + meaning: OBI:0001183 + title: epitope protection from tumor challenge experiment + OBI:0001184: + text: OBI:0001184 + description: An efficacy of epitope intervention experiment that tests the + efficacy of inducing an immune epitope response to prevent disease in a + host. + meaning: OBI:0001184 + title: epitope protection experiment + OBI:0001186: + text: OBI:0001186 + description: An epitope protection from infectious challenge experiment in + which the readout is a reduction in the presence of pathogens in the host + compared to controls. + meaning: OBI:0001186 + title: epitope protection from infectious challenge experiment based on pathogen + burden + OBI:0001187: + text: OBI:0001187 + description: An assay that measures the presence or amount of an infectious + agent in an evaluant + meaning: OBI:0001187 + title: infectious agent detection assay + OBI:0001188: + text: OBI:0001188 + description: An efficacy of epitope intervention experiment that tests the + ability of inducing an epitope immune response to increase the severity + of an existing disease in the host. + meaning: OBI:0001188 + title: epitope disease exacerbation experiment + OBI:0001189: + text: OBI:0001189 + description: An epitope protection experiment that determines the success + of the epitope intervention based on increased survival of the host. + meaning: OBI:0001189 + title: epitope protection experiment based on survival + OBI:0001190: + text: OBI:0001190 + description: An epitope intervention experiment that tests the ability of + inducing an epitope immune response to treat an existing disease in the + host. + meaning: OBI:0001190 + title: epitope treatment experiment + OBI:0001194: + text: OBI:0001194 + description: An enzyme-linked immunospot assay that detects transforming growth + factor-beta production by T cells. + meaning: OBI:0001194 + title: ELISPOT assay measuring epitope specific transforming growth factor-beta + production by T cells + OBI:0001196: + text: OBI:0001196 + description: A cytometric bead array assay that detects IP-10 production by + T cells. + meaning: OBI:0001196 + title: cytometric bead array assay measuring epitope specific IP-10 production + by T cells + OBI:0001198: + text: OBI:0001198 + description: A T cell epitope specific cytokine production assay that detects + interleukin-27 production by T cells. + meaning: OBI:0001198 + title: assay measuring epitope specific interleukin-27 production by T cells + OBI:0001203: + text: OBI:0001203 + description: A detection of specific nucleic acid polymers with complementary + probes that detects transforming growth factor-beta production by T cells. + meaning: OBI:0001203 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific transforming growth factor-beta production by + T cells + OBI:0001206: + text: OBI:0001206 + description: An enzyme-linked immunospot assay that detects granulocyte macrophage + colony stimulating factor production by T cells. + meaning: OBI:0001206 + title: ELISPOT assay measuring epitope specific granulocyte macrophage colony-stimulating + factor production by T cells + OBI:0001209: + text: OBI:0001209 + description: A T cell epitope specific cytokine production assay that detects + interleukin-10 production by T cells. + meaning: OBI:0001209 + title: assay measuring epitope specific interleukin-10 production by T cells + OBI:0001210: + text: OBI:0001210 + description: A cytometric bead array assay that detects transforming growth + factor-beta production by T cells + meaning: OBI:0001210 + title: cytometric bead array assay measuring epitope specific transforming + growth factor-beta production by T cells + OBI:0001215: + text: OBI:0001215 + description: A flow cytometry assay that detects epitope specific perforin + release by T cells. + meaning: OBI:0001215 + title: intracellular material detection assay measuring epitope specific perforin + release + OBI:0001216: + text: OBI:0001216 + description: A reporter cell line analyte detection bioassay that detects + interleukin-2 production by T cells. + meaning: OBI:0001216 + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-2 production by T cells + OBI:0001217: + text: OBI:0001217 + description: A T cell epitope specific cytokine production assay that detects + interleukin-22 production by T cells. + meaning: OBI:0001217 + title: assay measuring epitope specific interleukin-22 production by T cells + OBI:0001218: + text: OBI:0001218 + description: A T cell epitope specific cytokine production assay that detects + interleukin-8 production by T cells. + meaning: OBI:0001218 + title: assay measuring epitope specific interleukin-8 production by T cells + OBI:0001220: + text: OBI:0001220 + description: A reporter cell line analyte detection bioassay that detects + interleukin-10 production by T cells. + meaning: OBI:0001220 + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-10 production by T cells + OBI:0001221: + text: OBI:0001221 + description: A ChIP-ChIP assay in which immunoprecipitated chromatin is run + on a SNP array to detect polymorphism specific DNA elements in the isolated + chromatin + meaning: OBI:0001221 + title: ChIP-chip by SNP array assay + OBI:0001222: + text: OBI:0001222 + description: An enzyme-linked immunosorbent assay that detects RANTES production + by T cells. + meaning: OBI:0001222 + title: ELISA measuring epitope specific RANTES production by T cells + OBI:0001223: + text: OBI:0001223 + description: A cytometric bead array assay that detects interleukin-1 beta + production by T cells. + meaning: OBI:0001223 + title: cytometric bead array assay measuring epitope specific interleukin-1 + beta production by T cells + OBI:0001227: + text: OBI:0001227 + description: An enzyme-linked immunospot assay that detects interleukin-6 + production by T cells + meaning: OBI:0001227 + title: ELISPOT assay measuring epitope specific interleukin-6 production by + T cells + OBI:0001228: + text: OBI:0001228 + description: A T cell epitope specific helper activity assay that detects + the ability of a T cell epitope to enhance an antibody response. + meaning: OBI:0001228 + title: in vivo assay measuring epitope specific helper T cell enhancement + of a B cell mediated immune response + OBI:0001229: + text: OBI:0001229 + description: A surface plasmon resonance binding assay that measures the dissociation + constant [KD] of an epitope:MHC complex binding with a T cell receptor. + meaning: OBI:0001229 + title: plasmon resonance assay measuring the dissociation constant [KD] of + a T cell epitope:MHC:TCR complex + OBI:0001230: + text: OBI:0001230 + description: A T cell epitope specific cytokine production assay that detects + interleukin-5 production by T cells. + meaning: OBI:0001230 + title: assay measuring epitope specific interleukin-5 production by T cells + OBI:0001231: + text: OBI:0001231 + description: An enzyme-linked immunosorbent assay that detects transforming + growth factor-beta production by T cells. + meaning: OBI:0001231 + title: ELISA measuring epitope specific transforming growth factor-beta production + by T cells + OBI:0001232: + text: OBI:0001232 + description: A T cell epitope specific cytokine production assay that detects + RANTES production by T cells. + meaning: OBI:0001232 + title: assay measuring epitope specific RANTES production by T cells + OBI:0001233: + text: OBI:0001233 + description: A T cell epitope specific cytokine production assay that detects + granulocyte macrophage colony stimulating factor production by T cells. + meaning: OBI:0001233 + title: assay measuring epitope specific granulocyte macrophage colony stimulating + factor production by T cells + OBI:0001235: + text: OBI:0001235 + description: A transcription profiling by array assay that uses a tiling path + array. + meaning: OBI:0001235 + title: transcription profiling by tiling array assay + OBI:0001236: + text: OBI:0001236 + description: An enzyme-linked immunosorbent assay that detects interleukin-22 + production by T cells. + meaning: OBI:0001236 + title: ELISA measuring epitope specific interleukin-22 production by T cells + OBI:0001237: + text: OBI:0001237 + description: A T cell epitope specific cytokine production assay that detects + interleukin-21 production by T cells. + meaning: OBI:0001237 + title: assay measuring epitope specific interleukin-21 production by T cells + OBI:0001238: + text: OBI:0001238 + description: An enzyme-linked immunosorbent assay that detects interleukin-9 + production by T cells. + meaning: OBI:0001238 + title: ELISA measuring epitope specific interleukin-9 production by T cells + OBI:0001240: + text: OBI:0001240 + description: A flow cytometry assay that detects interleukin-6 production + by T cells. + meaning: OBI:0001240 + title: intracellular cytokine staining assay measuring epitope specific interleukin-6 + production by T cells + OBI:0001241: + text: OBI:0001241 + description: A reporter cell line analyte detection bioassay that detects + interleukin-4 production by T cells. + meaning: OBI:0001241 + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-4 production by T cells + OBI:0001242: + text: OBI:0001242 + description: A detection of specific nucleic acid polymers with complementary + probes that detects tumor necrosis factor alpha production by T cells. + meaning: OBI:0001242 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific tumor necrosis factor alpha production by T cells + OBI:0001243: + text: OBI:0001243 + description: A cytometric bead array assay that detects monocyte chemotactic + protein-1 production by T cells. + meaning: OBI:0001243 + title: cytometric bead array assay measuring epitope specific monocyte chemotactic + protein-1 production by T cells + OBI:0001244: + text: OBI:0001244 + description: An enzyme-linked immunosorbent assay that detects interleukin-23 + production by T cells. + meaning: OBI:0001244 + title: ELISA measuring epitope specific interleukin-23 production by T cells + OBI:0001245: + text: OBI:0001245 + description: A detection of specific nucleic acids with complementary probes + assay that detects epitope specific perforin release by T cells. + meaning: OBI:0001245 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific perforin release + OBI:0001246: + text: OBI:0001246 + description: An enzyme-linked immunosorbent assay that detects tumor necrosis + factor superfamily cytokine production by T cells. + meaning: OBI:0001246 + title: ELISA measuring epitope specific tumor necrosis factor superfamily + cytokine production by T cells + OBI:0001247: + text: OBI:0001247 + description: A genotyping assay that uses a high througput sequencer + meaning: OBI:0001247 + title: genotyping by high throughput sequencing assay + OBI:0001248: + text: OBI:0001248 + description: An assay in which chromatin is immunoprecipitated and subsequently + analyzed using a DNA microarray to identify which parts of DNA are part + of the isolated chromatin + meaning: OBI:0001248 + title: ChIP-chip assay + OBI:0001251: + text: OBI:0001251 + description: A T cell epitope specific cytokine production assay that detects + interleukin-13 production by T cells. + meaning: OBI:0001251 + title: assay measuring epitope specific interleukin-13 production by T cells + OBI:0001253: + text: OBI:0001253 + description: A T cell epitope specific cytokine production assay that detects + interleukin-9 production by T cells. + meaning: OBI:0001253 + title: assay measuring interleukin-9 production by T cells + OBI:0001255: + text: OBI:0001255 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-5 production by T cells. + meaning: OBI:0001255 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-5 production by T cells + OBI:0001260: + text: OBI:0001260 + description: An enzyme-linked immunosorbent assay that detects interleukin-3 + production by T cells. + meaning: OBI:0001260 + title: ELISA measuring epitope specific interleukin-3 production by T cells + OBI:0001261: + text: OBI:0001261 + description: An enzyme-linked immunosorbent assay that detects interleukin-1 + alpha production by T cells. + meaning: OBI:0001261 + title: ELISA measuring epitope specific interleukin-1 alpha production by + T cells + OBI:0001263: + text: OBI:0001263 + description: A T cell epitope specific helper activity assay that detects + the ability of a T cell epitope to enhance a T cell response. + meaning: OBI:0001263 + title: in vivo assay measuring epitope specific helper T cell enhancement + of a T cell mediated immune response + OBI:0001264: + text: OBI:0001264 + description: A T cell epitope specific cytokine production assay that detects + transforming growth factor-beta production by T cells. + meaning: OBI:0001264 + title: assay measuring epitope specific transforming growth factor-beta production + by T cells + OBI:0001266: + text: OBI:0001266 + description: A DNA methylation profiling assay in which the methylation state + of DNA is determined and can be compared between samples using sequencing + based technology + meaning: OBI:0001266 + title: DNA methylation profiling by high throughput sequencing assay + OBI:0001268: + text: OBI:0001268 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-12 production by T cells. + meaning: OBI:0001268 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-12 production by T cells + OBI:0001269: + text: OBI:0001269 + description: A T cell epitope dependent biological activity assay that detects + cytotoxic T cell degranulation. + meaning: OBI:0001269 + title: assay measuring epitope specific cytotoxic T cell degranulation + OBI:0001270: + text: OBI:0001270 + description: A reporter cell line analyte detection bioassay that detects + transforming growth factor-beta production by T cells. + meaning: OBI:0001270 + title: cell culture analyte detection bioassay measuring epitope specific + transforming growth factor-beta production by T cells + OBI:0001271: + text: OBI:0001271 + description: A type of transcription profiling assay where transcripts are + extracted from a sample, usually (but not always) transformed into cDNA, + and then sequenced. Sequence reads are generally mapped to a reference and + quantified to establish levels of gene transcription. + meaning: OBI:0001271 + title: transcription profiling by RNA sequencing assay + OBI:0001272: + text: OBI:0001272 + description: An enzyme-linked immunospot assay that detects tumor necrosis + factor superfamily cytokine production by T cells. + meaning: OBI:0001272 + title: ELISPOT assay measuring epitope specific tumor necrosis factor superfamily + cytokine production by T cells + OBI:0001273: + text: OBI:0001273 + description: A reporter cell line analyte detection bioassay that detects + interleukin-5 production by T cells. + meaning: OBI:0001273 + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-5 production by T cells + OBI:0001274: + text: OBI:0001274 + description: A genotyping assay that uses an array + meaning: OBI:0001274 + title: genotyping by array assay + OBI:0001276: + text: OBI:0001276 + description: A T cell epitope specific cytokine production assay that detects + production of chemokine (C-C motif) ligand 1 by T cells. + meaning: OBI:0001276 + title: assay measuring epitope specific chemokine (C-C motif) ligand 1 production + by T cells + OBI:0001277: + text: OBI:0001277 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-2 production by T cells. + meaning: OBI:0001277 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-2 production by T cells + OBI:0001279: + text: OBI:0001279 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-22 production by T cells. + meaning: OBI:0001279 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-22 production by T cells + OBI:0001280: + text: OBI:0001280 + description: A T cell epitope specific cytokine production assay that detects + interleukin-16 production by T cells. + meaning: OBI:0001280 + title: assay measuring epitope specific interleukin-16 production by T cells + OBI:0001281: + text: OBI:0001281 + description: An enzyme-linked immunosorbent assay that detects IP-10 production + by T cells. + meaning: OBI:0001281 + title: ELISA measuring epitope specific IP-10 production by T cells + OBI:0001282: + text: OBI:0001282 + description: An assay in which surface-bound, translationally competent ribosome + complexes are used to generate a translation profile for mRNA, which mRNA + may be a single molecular species, or a combination of species, including + complex mixtures such as those found in the set of mRNAs isolated from a + cell or tissue. One or more components of the surface-bound ribosome complex + may be labeled at specific positions to permit analysis of multiple or single + molecules for determination of ribosomal conformational changes and translation + kinetics. Translation profiles are used as the basis for comparison of an + mRNA or set of mRNA species. The translation profile can be used to determine + such characteristics as kinetics of initiation, kinetic of elongation, identity + of the polypeptide product, and the like. Analysis of translation profiles + may be used to determine differential gene expression, optimization of mRNA + sequences for expression, screening drug candidates for an effect on translation. + meaning: OBI:0001282 + title: translation profiling assay + OBI:0001283: + text: OBI:0001283 + description: An enzyme-linked immunosorbent assay that detects interleukin-15 + production by T cells. + meaning: OBI:0001283 + title: ELISA measuring epitope specific interleukin-15 production by T cells + OBI:0001284: + text: OBI:0001284 + description: A cytometric bead array assay that detects interleukin-12 production + by T cells. + meaning: OBI:0001284 + title: cytometric bead array assay measuring epitope specific interleukin-12 + production by T cells + OBI:0001288: + text: OBI:0001288 + description: An enzyme-linked immunosorbent assay that detects lymphotoxin + A production by T cells. + meaning: OBI:0001288 + title: ELISA measuring epitope specific lymphotoxin A production by T cells + OBI:0001289: + text: OBI:0001289 + description: A cytometric bead array assay that detects interleukin-5 production + by T cells. + meaning: OBI:0001289 + title: cytometric bead array assay measuring epitope specific interleukin-5 + production by T cells + OBI:0001291: + text: OBI:0001291 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-17 production by T cells. + meaning: OBI:0001291 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-17 production by T cells + OBI:0001292: + text: OBI:0001292 + description: A T cell epitope specific cytokine production assay that detects + interleukin-15 production by T cells. + meaning: OBI:0001292 + title: assay measuring epitope specific interleukin-15 production by T cells + OBI:0001295: + text: OBI:0001295 + description: A T cell epitope specific cytokine production assay that detects + interleukin-17 production by T cells. + meaning: OBI:0001295 + title: assay measuring epitope specific interleukin-17 production by T cells + OBI:0001296: + text: OBI:0001296 + description: A cytometric bead array assay that detects interleukin-17 production + by T cells. + meaning: OBI:0001296 + title: cytometric bead array assay measuring epitope specific interleukin-17 + production by T cells + OBI:0001297: + text: OBI:0001297 + description: A cytometric bead array assay that detects interleukin-10 production + by T cells. + meaning: OBI:0001297 + title: cytometric bead array assay measuring epitope specific interleukin-10 + production by T cells + OBI:0001298: + text: OBI:0001298 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-21 production by T cells. + meaning: OBI:0001298 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-21 production by T cells + OBI:0001299: + text: OBI:0001299 + description: A flow cytometry assay that detects interleukin-5 production + by T cells. + meaning: OBI:0001299 + title: intracellular cytokine staining assay measuring epitope specific interleukin-5 + production by T cells + OBI:0001300: + text: OBI:0001300 + description: A cytometric bead array assay that detects interleukin-2 production + by T cells. + meaning: OBI:0001300 + title: cytometric bead array assay measuring epitope specific interleukin-2 + production by T cells + OBI:0001301: + text: OBI:0001301 + description: A reporter cell line analyte detection bioassay that detects + interleukin-16 production by T cells. + meaning: OBI:0001301 + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-16 production by T cells + OBI:0001302: + text: OBI:0001302 + description: An enzyme-linked immunosorbent assay that detects macrophage + inflammatory protein-1 alpha production by T cells. + meaning: OBI:0001302 + title: ELISA measuring epitope specific macrophage inflammatory protein-1 + alpha production by T cells + OBI:0001303: + text: OBI:0001303 + description: A flow cytometry assay that detects granulocyte macrophage colony + stimulating factor production by T cells. + meaning: OBI:0001303 + title: intracellular cytokine staining assay measuring epitope specific granulocyte + macrophage colony-stimulating factor production by T cells + OBI:0001304: + text: OBI:0001304 + description: An assay in which double stranded RNA is synthesized with a sequence + complementary to a gene(s) of interest and introduced into a cell or organism, + where it is recognized as exogenous genetic material and activates the RNAi + pathway resulting in knockdown of the transcripts and providing a means + to study downstream changes in gene expression. + meaning: OBI:0001304 + title: RNAi profiling by array assay + OBI:0001308: + text: OBI:0001308 + description: A T cell epitope specific cytokine production assay that detects + IP-10 production by T cells. + meaning: OBI:0001308 + title: assay measuring epitope specific IP-10 production by T cells + OBI:0001309: + text: OBI:0001309 + description: A flow cytometry assay that detects interleukin-13 production + by T cells. + meaning: OBI:0001309 + title: intracellular cytokine staining assay measuring epitope specific interleukin-13 + production by T cells + OBI:0001311: + text: OBI:0001311 + description: A X-ray crystallography 3D molecular structure determination + assay that characterizes the 3-dimensional molecular structure of a T cell + epitope:MHC:TCR complex. + meaning: OBI:0001311 + title: X-ray crystallography assay determining the 3D structure of a T cell + epitope:MHC:TCR complex + OBI:0001315: + text: OBI:0001315 + description: An enzyme-linked immunosorbent assay that detects chemokine (C-C + motif) ligand 1 production by T cells. + meaning: OBI:0001315 + title: ELISA measuring epitope specific chemokine (C-C motif) ligand 1 production + by T cells + OBI:0001317: + text: OBI:0001317 + description: A flow cytometry assay that measures the cell-cell binding of + an epitope:MHC complex binding with a T cell receptor. + meaning: OBI:0001317 + title: flow cytometry assay measuring cell-cell binding of a T cell epitope:MHC:TCR + complex + OBI:0001318: + text: OBI:0001318 + description: An assay that detects proteins in a sample (quantified or otherwise + analyzed), e.g. antibody profiling using an array based technology. + meaning: OBI:0001318 + title: proteomic profiling by array assay + OBI:0001319: + text: OBI:0001319 + description: A reporter cell line analyte detection bioassay that detects + interferon-gamma production by T cells. + meaning: OBI:0001319 + title: cell culture analyte detection bioassay measuring epitope specific + interferon-gamma production by T cells + OBI:0001322: + text: OBI:0001322 + description: An enzyme-linked immunospot assay that detects epitope specific + granzyme B release by T cells. + meaning: OBI:0001322 + title: ELISPOT assay measuring epitope specific granzyme B release by T cells + OBI:0001324: + text: OBI:0001324 + description: An efficacy of T cell epitope intervention experiment that uses + a tolerance induction intervention experiment. + meaning: OBI:0001324 + title: in vivo assay measuring T cell epitope specific tolerance induction + OBI:0001325: + text: OBI:0001325 + description: A detection of specific nucleic acid polymers with complementary + probes that detects RANTES production by T cells. + meaning: OBI:0001325 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific RANTES production by T cells + OBI:0001326: + text: OBI:0001326 + description: A cytometric bead array assay that detects interleukin-4 production + by T cells + meaning: OBI:0001326 + title: cytometric bead array assay measuring epitope specific interleukin-4 + production by T cells + OBI:0001327: + text: OBI:0001327 + description: A T cell epitope specific cytokine production assay that detects + lymphotoxin A production by T cells. + meaning: OBI:0001327 + title: assay measuring epitope specific lymphotoxin A production by T cells + OBI:0001330: + text: OBI:0001330 + description: An enzyme-linked immunosorbent assay that detects chemokine (C-X-C + motif) ligand 9 production by T cells. + meaning: OBI:0001330 + title: ELISA measuring epitope specific chemokine (C-X-C motif) ligand 9 production + by T cells + OBI:0001332: + text: OBI:0001332 + description: A DNA methylation profiling assay in which the methylation state + of DNA is determined and can be compared between samples using array technology + meaning: OBI:0001332 + title: DNA methylation profiling by array assay + OBI:0001333: + text: OBI:0001333 + description: A T cell epitope specific cytokine production assay that detects + macrophage inflammatory protein-1 alpha production by T cells. + meaning: OBI:0001333 + title: assay measuring epitope specific macrophage inflammatory protein-1 + alpha production by T cells + OBI:0001335: + text: OBI:0001335 + description: An assay that analyses the microRNA component of the transcriptome + using a microRNA array. + meaning: OBI:0001335 + title: microRNA profiling by array assay + OBI:0001339: + text: OBI:0001339 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-4 production by T cells. + meaning: OBI:0001339 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-4 production by T cells + OBI:0001341: + text: OBI:0001341 + description: A reporter cell line analyte detection bioassay that detects + granulocyte macrophage colony stimulating factor production by T cells. + meaning: OBI:0001341 + title: cell culture analyte detection bioassay measuring epitope specific + granulocyte macrophage colony-stimulating factor production by T cells + OBI:0001342: + text: OBI:0001342 + description: A flow cytometry assay that detects interleukin-21 production + by T cells. + meaning: OBI:0001342 + title: intracellular cytokine staining assay measuring epitope specific interleukin-21 + production by T cells + OBI:0001343: + text: OBI:0001343 + description: A detection of specific nucleic acid polymers with complementary + probes that detects monocyte chemotactic protein-1 production by T cells. + meaning: OBI:0001343 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific monocyte chemotactic protein-1 production by + T cells + OBI:0001344: + text: OBI:0001344 + description: An enzyme-linked immunosorbent assay that detects monocyte chemotactic + protein-1 production by T cells. + meaning: OBI:0001344 + title: ELISA measuring epitope specific monocyte chemotactic protein-1 production + by T cells + OBI:0001345: + text: OBI:0001345 + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-C motif) ligand 4 production by T cells. + meaning: OBI:0001345 + title: assay measuring epitope specific chemokine (C-C motif) ligand 4 production + by T cells + OBI:0001346: + text: OBI:0001346 + description: An enzyme-linked immunosorbent assay that detects interleukin-21 + production by T cells. + meaning: OBI:0001346 + title: ELISA measuring epitope specific interleukin-21 production by T cells + OBI:0001348: + text: OBI:0001348 + description: An efficacy of T cell epitope intervention experiment that detects + epitope specific type IV hypersensitivity. + meaning: OBI:0001348 + title: in vivo skin test assay measuring T cell epitope specific type IV hypersensitivity + OBI:0001349: + text: OBI:0001349 + description: A cytometric bead array assay that detects interleukin-13 production + by T cells. + meaning: OBI:0001349 + title: cytometric bead array assay measuring epitope specific interleukin-13 + production by T cells + OBI:0001350: + text: OBI:0001350 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interferon-gamma production by T cells. + meaning: OBI:0001350 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interferon-gamma production by T cells + OBI:0001353: + text: OBI:0001353 + description: A cytometric bead array assay that detects tumor necrosis factor + alpha production by T cells. + meaning: OBI:0001353 + title: cytometric bead array assay measuring epitope specific tumor necrosis + factor alpha production by T cells + OBI:0001354: + text: OBI:0001354 + description: An enzyme-linked immunospot assay that detects interleukin-17 + production by T cells. + meaning: OBI:0001354 + title: ELISPOT assay measuring epitope specific interleukin-17 production + by T cells + OBI:0001356: + text: OBI:0001356 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interferon-beta production by T cells. + meaning: OBI:0001356 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interferon-beta production by T cells + OBI:0001357: + text: OBI:0001357 + description: A detection of specific nucleic acid polymers with complementary + probes that detects granulocyte macrophage colony stimulating factor production + by T cells. + meaning: OBI:0001357 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific granulocyte macrophage colony-stimulating factor + production by T cells + OBI:0001359: + text: OBI:0001359 + description: An enzyme-linked immunosorbent assay that detects interleukin-8 + production by T cells. + meaning: OBI:0001359 + title: ELISA measuring epitope specific interleukin-8 production by T cells + OBI:0001360: + text: OBI:0001360 + description: A cytometric bead array assay that detects interleukin-6 production + by T cells. + meaning: OBI:0001360 + title: cytometric bead array assay measuring epitope specific interleukin-6 + production by T cells + OBI:0001361: + text: OBI:0001361 + description: A transcription profiling assay that uses reverse transcription + PCR (RT-PCR). + meaning: OBI:0001361 + title: transcription profiling by RT-PCR assay + OBI:0001363: + text: OBI:0001363 + description: A T cell epitope specific cytokine production assay that detects + interleukin-23 production by T cells. + meaning: OBI:0001363 + title: assay measuring epitope specific interleukin-23 production by T cells + OBI:0001367: + text: OBI:0001367 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-10 production by T cells. + meaning: OBI:0001367 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-10 production by T cells + OBI:0001368: + text: OBI:0001368 + description: A cytometric bead array assay that detects tumor necrosis factor + superfamily cytokine production by T cells. + meaning: OBI:0001368 + title: cytometric bead array assay measuring epitope specific tumor necrosis + factor superfamily cytokine production by T cells + OBI:0001370: + text: OBI:0001370 + description: A flow cytometry assay that detects chemokine (C-C motif) ligand + 4 production by T cells. + meaning: OBI:0001370 + title: intracellular cytokine staining assay measuring epitope specific chemokine + (C-C motif) ligand 4 production by T cells + OBI:0001376: + text: OBI:0001376 + description: A flow cytometry assay that detects interleukin-3 production + by T cells. + meaning: OBI:0001376 + title: intracellular cytokine staining assay measuring epitope specific interleukin-3 + production by T cells + OBI:0001378: + text: OBI:0001378 + description: An enzyme-linked immunosorbent assay that detects chemokine (C-C + motif) ligand 4 production by T cells. + meaning: OBI:0001378 + title: ELISA measuring epitope specific chemokine (C-C motif) ligand 4 production + by T cells + OBI:0001379: + text: OBI:0001379 + description: A cytometric bead array assay that detects interferon-gamma production + by T cells. + meaning: OBI:0001379 + title: cytometric bead array assay measuring epitope specific interferon-gamma + production by T cells + OBI:0001380: + text: OBI:0001380 + description: A T cell epitope specific cytokine production assay that detects + interleukin-18 production by T cells. + meaning: OBI:0001380 + title: assay measuring epitope specific interleukin-18 production by T cells + OBI:0001382: + text: OBI:0001382 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-27 production by T cells. + meaning: OBI:0001382 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-27 production by T cells + OBI:0001383: + text: OBI:0001383 + description: A detection of specific nucleic acid polymers with complementary + probes that detects IP-10 production by T cells. + meaning: OBI:0001383 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific IP-10 production by T cells + OBI:0001384: + text: OBI:0001384 + description: A reporter cell line analyte detection bioassay that detects + interleukin-3 production by T cells. + meaning: OBI:0001384 + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-3 production by T cells + OBI:0001385: + text: OBI:0001385 + description: A flow cytometry assay that detects tumor necrosis factor superfamily + cytokine production by T cells. + meaning: OBI:0001385 + title: intracellular cytokine staining assay measuring epitope specific tumor + necrosis factor superfamily cytokine production by T cells + OBI:0001388: + text: OBI:0001388 + description: A T cell epitope specific cytokine production assay that detects + interleukin-1 alpha production by T cells. + meaning: OBI:0001388 + title: assay measuring epitope specific interleukin-1 alpha production by + T cells + OBI:0001389: + text: OBI:0001389 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-6 production by T cells. + meaning: OBI:0001389 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-6 production by T cells + OBI:0001390: + text: OBI:0001390 + description: A T cell epitope specific cytokine production assay that detects + interferon-beta production by T cells. + meaning: OBI:0001390 + title: assay measuring epitope specific interferon-beta production by T cells + OBI:0001391: + text: OBI:0001391 + description: A T cell epitope specific cytokine production assay that detects + interleukin-12 production by T cells. + meaning: OBI:0001391 + title: assay measuring epitope specific interleukin-12 production by T cells + OBI:0001392: + text: OBI:0001392 + description: An in vivo cell killing assay that measures the killing of antigen + presenting cells (APC) by T cells whose TCR recognizes an epitope presented + by the APC. + meaning: OBI:0001392 + title: in vivo assay measuring epitope specific T cell killing + OBI:0001393: + text: OBI:0001393 + description: An assay that measures changes in DNA sequence copy number using + a microarray. For example the analysis of LOH in tumor cells vs a non diseased + sample or the comparison of clinical isolated of disease causing bacteria. + meaning: OBI:0001393 + title: comparative genomic hybridization by array assay + OBI:0001395: + text: OBI:0001395 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-23 production by T cells. + meaning: OBI:0001395 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-23 production by T cells + OBI:0001397: + text: OBI:0001397 + description: A cytometric bead array assay that detects granulocyte colony + stimulating factor production by T cells. + meaning: OBI:0001397 + title: cytometric bead array assay measuring epitope specific granulocyte + colony stimulating factor production by T cells + OBI:0001400: + text: OBI:0001400 + description: A T cell epitope specific cytokine production assay that detects + tumor necrosis factor superfamily cytokine production by T cells. + meaning: OBI:0001400 + title: assay measuring epitope specific tumor necrosis factor superfamily + cytokine production by T cells + OBI:0001402: + text: OBI:0001402 + description: A promoter activity detection by reporter gene assay that detects + interleukin-2 production by T cells. + meaning: OBI:0001402 + title: promoter activity detection by reporter gene assay measuring epitope + specific interleukin-2 production by T cells + OBI:0001405: + text: OBI:0001405 + description: A cytometric bead array assay that detects macrophage inflammatory + protein-1 alpha production by T cells. + meaning: OBI:0001405 + title: cytometric bead array assay measuring epitope specific macrophage inflammatory + protein-1 alpha production by T cells + OBI:0001406: + text: OBI:0001406 + description: A T cell epitope specific cytokine production assay that detects + interleukin-3 production by T cells. + meaning: OBI:0001406 + title: assay measuring epitope specific interleukin-3 production by T cells + OBI:0001407: + text: OBI:0001407 + description: A T cell epitope dependent biological activity assay that detects + T cell activation. + meaning: OBI:0001407 + title: assay measuring epitope specific T cell activation + OBI:0001412: + text: OBI:0001412 + description: A cytometric bead array assay that detects RANTES production + by T cells. + meaning: OBI:0001412 + title: cytometric bead array assay measuring epitope specific RANTES production + by T cells + OBI:0001413: + text: OBI:0001413 + description: A reporter cell line analyte detection bioassay that detects + interleukin-6 production by T cells. + meaning: OBI:0001413 + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-6 production by T cells + OBI:0001414: + text: OBI:0001414 + description: A T cell epitope specific cytokine production assay that detects + interferon-gamma production by T cells. + meaning: OBI:0001414 + title: assay measuring epitope specific interferon-gamma production by T cells + OBI:0001416: + text: OBI:0001416 + description: An assay of epitope specific tumor necrosis factor alpha production + by T cells that detects tumor necrosis factor production. + meaning: OBI:0001416 + title: assay measuring epitope specific tumor necrosis factor alpha production + by T cells + OBI:0001419: + text: OBI:0001419 + description: A ChIP-ChIP assay in which immunoprecipitated chromatin is run + on a tiling array that covers stretches of DNA to to detect which elements + in those stretches are present in the isolated chromatin + meaning: OBI:0001419 + title: ChIP-chip by tiling array assay + OBI:0001423: + text: OBI:0001423 + description: A flow cytometry assay that detects epitope specific granzyme + B release by T cells + meaning: OBI:0001423 + title: intracellular material detection measuring epitope specific granzyme + B release by T cells + OBI:0001433: + text: OBI:0001433 + description: A radio immuno assay that detects interferon-gamma production + by T cells. + meaning: OBI:0001433 + title: radio immuno assay measuring epitope specific interferon-gamma production + by T cells + OBI:0001436: + text: OBI:0001436 + description: A T cell epitope specific cytotoxic T cell degranulation assay + that detects granzyme B release by T cells. + meaning: OBI:0001436 + title: assay measuring epitope specific granzyme B release by T cells + OBI:0001437: + text: OBI:0001437 + description: A flow cytometry assay that detects chemokine (C-X-C motif) ligand + 9 production by T cells. + meaning: OBI:0001437 + title: intracellular cytokine staining assay measuring epitope specific chemokine + (C-X-C motif) ligand 9 production by T cells + OBI:0001438: + text: OBI:0001438 + description: An enzyme-linked immunosorbent assay that detects macrophage + inflammatory protein-1 gamma production by T cells. + meaning: OBI:0001438 + title: ELISA measuring epitope specific macrophage inflammatory protein-1 + gamma production by T cells + OBI:0001445: + text: OBI:0001445 + description: A T cell epitope specific cytokine production assay that detects + interleukin-2 production by T cells. + meaning: OBI:0001445 + title: assay measuring epitope specific interleukin-2 production by T cells + OBI:0001449: + text: OBI:0001449 + description: A T cell epitope specific cytokine production assay that detects + interleukin-1 beta production by T cells. + meaning: OBI:0001449 + title: assay measuring epitope specific interleukin-1 beta production by T + cells + OBI:0001450: + text: OBI:0001450 + description: A T cell epitope specific cytokine production assay that detects + interleukin-4 production by T cells. + meaning: OBI:0001450 + title: assay measuring epitope specific interleukin-4 production by T cells + OBI:0001451: + text: OBI:0001451 + description: A T cell epitope specific cytokine production assay that detects + interleukin-6 production by T cells. + meaning: OBI:0001451 + title: assay measuring epitope specific interleukin-6 production by T cells + OBI:0001452: + text: OBI:0001452 + description: A reporter cell line analyte detection bioassay that detects + tumor necrosis factor alpha production by T cells. + meaning: OBI:0001452 + title: cell culture analyte detection bioassay measuring epitope specific + tumor necrosis factor alpha production by T cells + OBI:0001453: + text: OBI:0001453 + description: A flow cytometry assay that detects lymphotoxin A production + by T cells. + meaning: OBI:0001453 + title: intracellular cytokine staining assay measuring epitope specific lymphotoxin + A production by T cells + OBI:0001455: + text: OBI:0001455 + description: An enzyme-linked immunospot assay that detects interleukin-5 + production by T cells. + meaning: OBI:0001455 + title: ELISPOT assay measuring epitope specific interleukin-5 production by + T cells + OBI:0001456: + text: OBI:0001456 + description: A T cell epitope specific cytokine production assay that detects + macrophage inflammatory protein-1 gamma production by T cells. + meaning: OBI:0001456 + title: assay measuring epitope specific macrophage inflammatory protein-1 + gamma production by T cells + OBI:0001457: + text: OBI:0001457 + description: A cytometric bead array assay that detects interleukin-8 production + by T cells. + meaning: OBI:0001457 + title: cytometric bead array assay measuring epitope specific interleukin-8 + production by T cells + OBI:0001459: + text: OBI:0001459 + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-X-C motif) ligand 9 production by T cells. + meaning: OBI:0001459 + title: assay measuring epitope specific chemokine (C-X-C motif) ligand 9 production + by T cells + OBI:0001461: + text: OBI:0001461 + description: An enzyme-linked immunosorbent assay that detects epitope specific + granzyme B release by T cells. + meaning: OBI:0001461 + title: ELISA measuring epitope specific granzyme B release by T cells + OBI:0001463: + text: OBI:0001463 + description: A transcription profiling assay that uses array technology. + meaning: OBI:0001463 + title: transcription profiling by array assay + OBI:0001465: + text: OBI:0001465 + description: A T cell epitope specific cytokine production assay that detects + monocyte chemotactic protein-1 production by T cells. + meaning: OBI:0001465 + title: assay measuring epitope specific monocyte chemotactic protein-1 production + by T cells + OBI:0001466: + text: OBI:0001466 + description: A flow cytometry assay that detects interleukin-12 production + by T cells. + meaning: OBI:0001466 + title: intracellular cytokine staining assay measuring epitope specific interleukin-12 + production by T cells + OBI:0001467: + text: OBI:0001467 + description: An efficacy of T cell epitope intervention experiment that uses + a disease exacerbation in vivo intervention experiment. + meaning: OBI:0001467 + title: in vivo assay measuring T cell epitope specific disease exacerbation + OBI:0001469: + text: OBI:0001469 + description: A MHC ligand processing and presentation assay in which the presence + of a specific ligand in an eluate is detected using the response of T cells + that are known to be monospecific for that ligand as a readout. + meaning: OBI:0001469 + title: monospecific T cell recognition assay measuring MHC ligand processing + and presentation + OBI:0001473: + text: OBI:0001473 + description: An in vivo assay measuring T cell epitope specific protection + from tumor challenge using tumor burden. + meaning: OBI:0001473 + title: in vivo assay measuring T cell epitope specific protection after tumor + burden challenge + OBI:0001475: + text: OBI:0001475 + description: An in vivo assay measuring T cell epitope specific protection + from pathogen challenge using pathogen burden. + meaning: OBI:0001475 + title: in vivo assay measuring T cell epitope specific protection from infectious + challenge based on pathogen burden + OBI:0001476: + text: OBI:0001476 + description: A binding assay in which a collection of phages expressing a + library of different peptides or protein fragnments is used to infect cells, + followed by screening for cells that bind a protein of interest, and identifiying + the sequence of infecting phages to determine a suitable binding partner. + meaning: OBI:0001476 + title: phage display binding assay + OBI:0001478: + text: OBI:0001478 + description: A MHC ligand processing and presentation assay that uses a mass + spectrometry assay to identify eluted ligands + meaning: OBI:0001478 + title: mass spectrometry assay measuring MHC ligand processing and presentation + OBI:0001482: + text: OBI:0001482 + description: A flow cytometry assay that detects transforming growth factor-beta + production by T cells. + meaning: OBI:0001482 + title: intracellular cytokine staining assay measuring epitope specific transforming + growth factor-beta production by T cells + OBI:0001484: + text: OBI:0001484 + description: A T cell epitope dependent biological activity determination + assay that uses an in vivo intervention experiment. + meaning: OBI:0001484 + title: assay measuring T cell epitope specific in vivo activity + OBI:0001488: + text: OBI:0001488 + description: An efficacy of epitope intervention experiment that tests the + ability of the intervention to decrease an existing immune response + meaning: OBI:0001488 + title: epitope tolerance induction experiment + OBI:0001489: + text: OBI:0001489 + description: A mass spectrometry of MHC ligands assay that identifies eluted + ligands from cell bound MHC. + meaning: OBI:0001489 + title: mass spectrometry assay measuring MHC ligand processing and presentation + of MHC ligands eluted from cellular MHC + OBI:0001490: + text: OBI:0001490 + description: A cytometric bead array assay that detects granulocyte macrophage + colony stimulating factor production by T cells. + meaning: OBI:0001490 + title: cytometric bead array measuring epitope specific granulocyte macrophage + colony-stimulating factor production by T cells + OBI:0001491: + text: OBI:0001491 + description: A binding assay that uses radioactivity detection as an indicator + of binding. + meaning: OBI:0001491 + title: binding assay using radioactivity detection + OBI:0001492: + text: OBI:0001492 + description: An in vivo assay measuring T cell epitope specific protection + from other challenge using survival. + meaning: OBI:0001492 + title: in vivo assay measuring T cell epitope specific protection based on + survival + OBI:0001493: + text: OBI:0001493 + description: A cell bound MHC binding assay that uses a T cell epitope recognition + assay. + meaning: OBI:0001493 + title: cell bound MHC competitive binding assay of a MHC:ligand complex using + T cell epitope recognition + OBI:0001495: + text: OBI:0001495 + description: A T cell epitope dependent biological activity assay that detects + the ability of epitope specific helper T cells to enhance either B cell + or T cell adaptive immune response function. + meaning: OBI:0001495 + title: in vivo assay measuring epitope specific T cell helper activity + OBI:0001496: + text: OBI:0001496 + description: A flow cytometry assay that detects interleukin-22 production + by T cells. + meaning: OBI:0001496 + title: intracellular cytokine staining assay measuring epitope specific interleukin-22 + production by T cells + OBI:0001497: + text: OBI:0001497 + description: A T cell epitope specific cytotoxic T cell degranulation assay + that detects perforin release by T cells. + meaning: OBI:0001497 + title: assay measuring epitope specific perforin release by T cells + OBI:0001499: + text: OBI:0001499 + description: A binding assay that uses fluorescence detection as an indicator + of binding. + meaning: OBI:0001499 + title: binding assay using fluorescence detection + OBI:0001500: + text: OBI:0001500 + description: A MHC ligand processing and presentation assay in which an HPL + chromatography is run to separate an input mixture of ligands eluted from + MHC into fractions. These fractions are tested for recognition by T cells + and compared to the recognition of a synthetic ligand that is presumed to + be the recognized epitope. Identical HPLC fractionation and T cell recognition + patterns confirm that the specific ligand was presented by MHC molecules. + meaning: OBI:0001500 + title: coelution assay measuring MHC ligand processing and presentation using + T cell recognition of HPLC fractionated eluate compared to synthetic ligand + OBI:0001501: + text: OBI:0001501 + description: An assay in which a material's fluorescence is determined. + meaning: OBI:0001501 + title: fluorescence detection assay + OBI:0001507: + text: OBI:0001507 + description: An efficacy of T cell epitope intervention experiment that detects + a decrease in disease. + meaning: OBI:0001507 + title: in vivo assay measuring T cell epitope specific treatment of disease + OBI:0001509: + text: OBI:0001509 + description: A MHC ligand processing and presentation assay that uses Edman + degradation to identify the eluted ligands + meaning: OBI:0001509 + title: Edman degradation assay measuring MHC ligand processing and presentation + OBI:0001510: + text: OBI:0001510 + description: A mass spectrometry of MHC ligands that identifies eluted ligands + from secreted MHC. + meaning: OBI:0001510 + title: mass spectrometry assay measuring MHC ligand processing and presentation + of MHC ligands eluted from secreted MHC + OBI:0001512: + text: OBI:0001512 + description: A cytometric bead array assay that detects interleukin-17A production + by T cells. + meaning: OBI:0001512 + title: cytometric bead array assay measuring epitope specific interleukin-17A + production by T cells + OBI:0001513: + text: OBI:0001513 + description: A radioactivity detection assay that detects loss of binding + of a known reference ligand to purified-MHC due to competition by the ligand + under investigation. + meaning: OBI:0001513 + title: radioactivity detection assay measuring competitive binding of a purified-MHC:ligand + complex + OBI:0001516: + text: OBI:0001516 + description: A radioactivity detection assay that measures half maximal effective + concentration (EC50) to detect the direct binding of a cell-lysate-MHC molecule + with a ligand. + meaning: OBI:0001516 + title: radioactivity detection assay measuring half maximal effective concentration + [EC50] to determine direct binding of a cell-lysate-MHC:ligand complex + OBI:0001517: + text: OBI:0001517 + description: A radioactivity detection assay that measures half maximal inhibitory + concentration (IC50) to detect the loss of binding of a known reference + ligand to cell-bound-MHC due to competition by the ligand under investigation. + meaning: OBI:0001517 + title: radioactivity detection assay measuring half maximal inhibitory concentration + [IC50] to determine competitive binding of a cell-bound-MHC:ligand complex + OBI:0001519: + text: OBI:0001519 + description: A fluorescence detection assay that detects direct binding of + a cell-lysate-MHC molecule with a ligand. + meaning: OBI:0001519 + title: fluorescence detection assay measuring direct binding of a cell-lysate-MHC:ligand + complex + OBI:0001520: + text: OBI:0001520 + description: A fluorescence detection assay that measures half maximal inhibitory + concentration (IC50) to detect the loss of binding of a known reference + ligand to cell-bound-MHC due to competition by the ligand under investigation. + meaning: OBI:0001520 + title: fluorescence detection assay measuring half maximal inhibitory concentration + [IC50] to determine competitive binding of a cell-bound-MHC:ligand complex + OBI:0001521: + text: OBI:0001521 + description: An enzyme-linked immunosorbent assay that detects granulocyte + colony stimulating factor production by T cells. + meaning: OBI:0001521 + title: ELISA measuring epitope specific granulocyte colony stimulating factor + production by T cells + OBI:0001523: + text: OBI:0001523 + description: A cytometric bead array assay that detects interleukin-17F production + by T cells. + meaning: OBI:0001523 + title: cytometric bead array assay measuring epitope specific interleukin-17F + production by T cells + OBI:0001524: + text: OBI:0001524 + description: A fluorescence detection assay that measures equilibrium association + constant (KA) to detect the direct binding of a cell-bound-MHC molecule + with a ligand. + meaning: OBI:0001524 + title: fluorescence detection assay measuring equilibrium association constant + [KA] to determine direct binding of a cell-bound-MHC:ligand complex + OBI:0001531: + text: OBI:0001531 + description: A fluorescence detection assay that measures half life to detect + the direct binding of a purified-MHC molecule with a ligand. + meaning: OBI:0001531 + title: fluorescence detection assay measuring half life to determine direct + binding of a purified-MHC:ligand complex + OBI:0001532: + text: OBI:0001532 + description: A cytometric bead array assay that detects interleukin-9 production + by T cells. + meaning: OBI:0001532 + title: cytometric bead array assay measuring epitope specific interleukin-9 + production by T cells + OBI:0001534: + text: OBI:0001534 + description: A fluorescence detection assay that detects loss of binding of + a known reference ligand to purified-MHC due to competition by the ligand + under investigation. + meaning: OBI:0001534 + title: fluorescence detection assay measuring competitive binding of a purified-MHC:ligand + complex + OBI:0001537: + text: OBI:0001537 + description: A fluorescence detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to purified-MHC due to competition by the ligand under investigation. + meaning: OBI:0001537 + title: fluorescence detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a purified-MHC:ligand complex + OBI:0001539: + text: OBI:0001539 + description: A fluorescence detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to cell-bound-MHC due to competition by the ligand under investigation. + meaning: OBI:0001539 + title: fluorescence detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a cell-bound-MHC:ligand complex + OBI:0001541: + text: OBI:0001541 + description: A fluorescence detection assay measuring binding on rate (kon) + to detect direct binding of a purified-MHC:ligand complex. + meaning: OBI:0001541 + title: fluorescence detection assay measuring binding on rate [kon] to determine + direct binding of a purified-MHC:ligand complex + OBI:0001542: + text: OBI:0001542 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-13 production by T cells. + meaning: OBI:0001542 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-13 production by T cells + OBI:0001543: + text: OBI:0001543 + description: A fluorescence detection assay that measures equilibrium dissociation + constant (KD) to detect direct binding of a purified-MHC molecule with a + ligand and provides EC50 values determined under assay conditions where + the EC50 approximates a KD value. + meaning: OBI:0001543 + title: fluorescence detection assay measuring equilibrium dissociation constant + [KD] to determine direct binding of a purified-MHC:ligand complex approximated + by EC50 + OBI:0001544: + text: OBI:0001544 + description: A radioactivity detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to cell-lysate-MHC due to competition by the ligand under investigation. + meaning: OBI:0001544 + title: radioactivity detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a cell-lysate-MHC:ligand complex + OBI:0001545: + text: OBI:0001545 + description: A flow cytometry assay that detects macrophage inflammatory protein-1 + alpha production by T cells. + meaning: OBI:0001545 + title: intracellular cytokine staining assay measuring epitope specific macrophage + inflammatory protein-1 alpha production by T cells + OBI:0001549: + text: OBI:0001549 + description: A radioactivity detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to cell-bound-MHC due to competition by the ligand under investigation. + meaning: OBI:0001549 + title: radioactivity detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a cell-bound-MHC:ligand complex + OBI:0001550: + text: OBI:0001550 + description: A qualitative binding assay that detects the binding of a cell-bound-MHC + molecule with a ligand. + meaning: OBI:0001550 + title: assay measuring binding of a cell-bound-MHC:ligand complex + OBI:0001552: + text: OBI:0001552 + description: A flow cytometry assay that detects tumor necrosis factor (ligand) + superfamily member 11 production by T cells. + meaning: OBI:0001552 + title: intracellular cytokine staining assay measuring epitope specific tumor + necrosis factor (ligand) superfamily member 11 production by T cells + OBI:0001553: + text: OBI:0001553 + description: A MHC:ligand binding assay that measures a binding constant. + meaning: OBI:0001553 + title: assay measuring a binding constant of a MHC:ligand complex + OBI:0001555: + text: OBI:0001555 + description: A qualitative binding assay that detects the binding of a purified-MHC + molecule with a ligand. + meaning: OBI:0001555 + title: assay measuring binding of a purified-MHC:ligand complex + OBI:0001556: + text: OBI:0001556 + description: A radioactivity detection assay that detects direct binding of + a cell-lysate-MHC molecule with a ligand. + meaning: OBI:0001556 + title: radioactivity detection assay measuring direct binding of a cell-lysate-MHC:ligand + complex + OBI:0001558: + text: OBI:0001558 + description: A radioactivity detection assay that measures half life to detect + the direct binding of a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001558 + title: radioactivity detection assay measuring half life to determine direct + binding of a cell-bound-MHC:ligand complex + OBI:0001559: + text: OBI:0001559 + description: A fluorescence detection assay that measures half life to detect + the direct binding of a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001559 + title: fluorescence detection assay measuring half life to determine direct + binding of a cell-bound-MHC:ligand complex + OBI:0001561: + text: OBI:0001561 + description: A fluorescence detection assay that measures half maximal effective + concentration (EC50) to detect direct binding of a cell-bound-MHC molecule + with a ligand. + meaning: OBI:0001561 + title: fluorescence detection assay measuring half maximal effective concentration + [EC50] to determine direct binding of a cell-bound-MHC:ligand complex + OBI:0001562: + text: OBI:0001562 + description: A flow cytometry assay that detects interleukin-17F production + by T cells. + meaning: OBI:0001562 + title: intracellular cytokine staining assay measuring epitope specific interleukin-17F + production by T cells + OBI:0001564: + text: OBI:0001564 + description: A radioactivity detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to purified-MHC due to competition by the ligand under investigation and + provides IC50 values determined under assay conditions where the IC50 approximates + a KD value. + meaning: OBI:0001564 + title: radioactivity detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a purified-MHC:ligand complex approximated + by IC50 + OBI:0001565: + text: OBI:0001565 + description: A radioactivity detection assay that measures half life to detect + the direct binding of a cell-lysate-MHC molecule with a ligand. + meaning: OBI:0001565 + title: radioactivity detection assay measuring half life to determine direct + binding of a cell-lysate-MHC:ligand complex + OBI:0001567: + text: OBI:0001567 + description: A radioactivity detection assay that measures binding off rate + [koff] to detect direct binding of a cell-lysate-MHC molecule with a ligand. + meaning: OBI:0001567 + title: radioactivity detection assay measuring binding off rate [koff] to + determine direct binding of a cell-lysate-MHC:ligand complex + OBI:0001568: + text: OBI:0001568 + description: A radioactivity detection assay that measures half maximal inhibitory + concentration (IC50) to detect the loss of binding of a known reference + ligand to purified-MHC due to competition by the ligand under investigation. + meaning: OBI:0001568 + title: radioactivity detection assay measuring half maximal inhibitory concentration + [IC50] to determine competitive binding of a purified-MHC:ligand complex + OBI:0001569: + text: OBI:0001569 + description: A fluorescence detection assay that measures binding off rate + [koff] to detect direct binding of a purified-MHC molecule with a ligand. + meaning: OBI:0001569 + title: fluorescence detection assay measuring binding off rate [koff] to determine + direct binding of a purified-MHC:ligand complex + OBI:0001570: + text: OBI:0001570 + description: A T cell epitope specific cytokine production assay that detects + vascular endothelial growth factor production by T cells. + meaning: OBI:0001570 + title: assay measuring epitope specific vascular endothelial growth factor + production by T cells + OBI:0001577: + text: OBI:0001577 + description: A cytometric bead array assay that detects interleukin-22 production + by T cells. + meaning: OBI:0001577 + title: cytometric bead array assay measuring epitope specific intracellular + cytokine staining (ICS) IL-22 production by T cells + OBI:0001578: + text: OBI:0001578 + description: An enzyme-linked immunosorbent assay that detects vascular endothelial + growth factor production by T cells. + meaning: OBI:0001578 + title: ELISA measuring epitope specific vascular endothelial growth factor + production by T cells + OBI:0001579: + text: OBI:0001579 + description: A qualitative binding assay that detects the binding of a cell-lysate-MHC + molecule with a ligand. + meaning: OBI:0001579 + title: assay measuring binding of a cell-lysate-MHC:ligand complex + OBI:0001584: + text: OBI:0001584 + description: A phage display binding assay that detects direct binding of + a purified-MHC molecule with a ligand. + meaning: OBI:0001584 + title: phage display binding assay measuring binding of a purified-MHC:ligand + complex + OBI:0001585: + text: OBI:0001585 + description: A cytometric bead array assay that detects interleukin-7 production + by T cells. + meaning: OBI:0001585 + title: cytometric bead array assay measuring epitope specific interleukin-7 + production by T cells + OBI:0001586: + text: OBI:0001586 + description: A radioactivity detection assay that measures half life to detect + the direct binding of a purified-MHC molecule with a ligand. + meaning: OBI:0001586 + title: radioactivity detection assay measuring half life to determine direct + binding of a purified-MHC:ligand complex + OBI:0001587: + text: OBI:0001587 + description: A T cell epitope specific cytokine production assay that detects + interleukin-7 production by T cells. + meaning: OBI:0001587 + title: assay measuring epitope specific interleukin-7 production by T cells + OBI:0001589: + text: OBI:0001589 + description: A flow cytometry assay that detects interleukin-17A production + by T cells. + meaning: OBI:0001589 + title: intracellular cytokine staining assay measuring epitope specific interleukin-17A + production by T cells + OBI:0001590: + text: OBI:0001590 + description: A fluorescence detection assay that detects direct binding of + a purified-MHC molecule with a ligand. + meaning: OBI:0001590 + title: fluorescence detection assay measuring direct binding of a purified-MHC:ligand + complex + OBI:0001591: + text: OBI:0001591 + description: A binding assay that measures the formation or disassociation + of a complex of 2 material entities directly without use of a competitve + ligand. + meaning: OBI:0001591 + title: direct binding assay + OBI:0001592: + text: OBI:0001592 + description: A fluorescence detection assay that measures half maximal effective + concentration (EC50) to detect direct binding of a purified-MHC molecule + with a ligand. + meaning: OBI:0001592 + title: fluorescence detection assay measuring half maximal effective concentration + [EC50] to determine direct binding of a purified-MHC:ligand complex + OBI:0001593: + text: OBI:0001593 + description: A binding assay that detects the inhibition of binding between + 2 material entities known to form a complex by the addition of a third material + entity of interest. Inhibition of binding between the 2 materials reflects + binding by the third material. + meaning: OBI:0001593 + title: competitive inhibition of binding assay + OBI:0001594: + text: OBI:0001594 + description: A fluorescence detection assay that detects loss of binding of + a known reference ligand to cell-bound-MHC due to competition by the ligand + under investigation. + meaning: OBI:0001594 + title: fluorescence detection assay measuring competitive binding of a cell-bound-MHC:ligand + complex + OBI:0001595: + text: OBI:0001595 + description: A X-ray crystallography 3D molecular structure determination + assay that characterizes the 3-dimensional molecular structure of a MHC:ligand + complex. + meaning: OBI:0001595 + title: X-ray crystallography assay determining the 3D structure of a MHC:ligand + complex + OBI:0001597: + text: OBI:0001597 + description: A cell bound MHC ligand binding half maximal inhibitory concentration + (IC50) determination assay that uses a T cell epitope recognition assay + to measure ligand binding. + meaning: OBI:0001597 + title: cell bound MHC competitive binding assay measuring half maximal inhibitory + concentration [IC50] of a MHC:ligand complex using T cell epitope recognition + OBI:0001599: + text: OBI:0001599 + description: A radioactivity detection assay that detects loss of binding + of a known reference ligand to cell-bound-MHC due to competition by the + ligand under investigation. + meaning: OBI:0001599 + title: radioactivity detection assay measuring competitive binding of a cell-bound-MHC:ligand + complex + OBI:0001600: + text: OBI:0001600 + description: A T cell epitope specific cytokine production assay that detects + granulocyte colony stimulating factor production by T cells. + meaning: OBI:0001600 + title: assay measuring epitope specific granulocyte colony stimulating factor + production by T cells + OBI:0001601: + text: OBI:0001601 + description: A cytometric bead array assay that detects interleukin-21 production + by T cells. + meaning: OBI:0001601 + title: cytometric bead array assay measuring epitope specific intracellular + cytokine staining (ICS) IL-21 production by T cells + OBI:0001602: + text: OBI:0001602 + description: A radioactivity detection assay that detects direct binding of + a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001602 + title: radioactivity detection assay measuring direct binding of a cell-bound-MHC:ligand + complex + OBI:0001604: + text: OBI:0001604 + description: A fluorescence detection assay that measures the 50% dissociation + of binding temperature of a purified-MHC molecule with a ligand. + meaning: OBI:0001604 + title: fluorescence detection assay measuring 50% dissociation of binding + temperature [Tm] of a purified-MHC:ligand complex + OBI:0001606: + text: OBI:0001606 + description: A fluorescence detection assay that detects direct binding of + a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001606 + title: fluorescence detection assay measuring direct binding of a cell-bound-MHC:ligand + complex + OBI:0001607: + text: OBI:0001607 + description: An assay of epitope specific tumor necrosis factor (ligand) superfamily + member 11 production by T cells that detects tumor necrosis factor production. + meaning: OBI:0001607 + title: assay measuring epitope specific tumor necrosis factor (ligand) superfamily + member 11 production by T cells + OBI:0001608: + text: OBI:0001608 + description: A radioactivity detection assay that detects direct binding of + a purified-MHC molecule with a ligand. + meaning: OBI:0001608 + title: radioactivity detection assay measuring direct binding of a purified-MHC:ligand + complex + OBI:0001609: + text: OBI:0001609 + description: A flow cytometry assay that detects interleukin-8 production + by T cells. + meaning: OBI:0001609 + title: intracellular cytokine staining assay measuring epitope specific interleukin-8 + production by T cells + OBI:0001610: + text: OBI:0001610 + description: A cytometric bead array assay that detects interleukin-23 production + by T cells. + meaning: OBI:0001610 + title: cytometric bead array assay measuring epitope specific intracellular + cytokine staining (ICS) IL-23 production by T cells + OBI:0001613: + text: OBI:0001613 + description: A fluorescence detection assay that measures half maximal inhibitory + concentration (IC50) to detect the loss of binding of a known reference + ligand to purified-MHC due to competition by the ligand under investigation. + meaning: OBI:0001613 + title: fluorescence detection assay measuring half maximal inhibitory concentration + [IC50] to determine competitive binding of a purified-MHC:ligand complex + OBI:0001624: + text: OBI:0001624 + description: An organism detection assay that identifies the organism species + in a specimen. + meaning: OBI:0001624 + title: organism species detection assay + OBI:0001630: + text: OBI:0001630 + description: An analyte assay that uses a biomaterial's preferential affinity + for either the mobile phase or the stationary phase to separate it from + other materials and thereby detect its presence in an input material. + meaning: OBI:0001630 + title: analytical chromatography + OBI:0001631: + text: OBI:0001631 + description: An imaging assay in which an electrons are used to probe the + density, shape and composition of an input material which are detected in + an electron microscope and utilized to produce an image of the material. + meaning: OBI:0001631 + title: electron microscopy imaging assay + OBI:0001632: + text: OBI:0001632 + description: A assay detecting a molecular label assay in which the label + is attached to an antibody so that substances are marked based on the antibody's + binding specificity. + meaning: OBI:0001632 + title: immuno staining assay + OBI:0001634: + text: OBI:0001634 + description: A binding assay in which the heat generated or absorbed during + a binding event is measured, which allows determination of binding constants, + reaction stoichiometry, enthalpy and entropy. + meaning: OBI:0001634 + title: calorimetric binding assay + OBI:0001635: + text: OBI:0001635 + description: A binding assay in which affinity is measured by detecting a + change in fluorescence (usually quenching) that occurs upon binding of the + antibody to the ligand. The fluorescent signal that is affected by binding + is either from an exogenous fluorophore attached to the ligand, or is the + intrisic fluorescence of aromatic (tryptophan) residues on the binding site + of the antibody (no conjugated fluorophore necessary) or, less commonly, + on the ligand binding region (epitope). + meaning: OBI:0001635 + title: antibody binding detection by fluorescence quenching + OBI:0001638: + text: OBI:0001638 + description: A B cell epitope equilibrium dissociation constant (KD) assay + that provides IC50 values determined under assay conditions where the IC50 + approximates a KD value using a B cell epitope antigen inhibition of binding + assay. + meaning: OBI:0001638 + title: antigen inhibition assay measuring the dissociation constant [KD] of + a B cell epitope:antibody complex approximated by IC50 + OBI:0001639: + text: OBI:0001639 + description: A B cell epitope specific activation of additional immune response + assay that detects histamine release in vitro. + meaning: OBI:0001639 + title: assay measuring epitope specific Ig-mediated histamine release + OBI:0001640: + text: OBI:0001640 + description: A B cell epitope dependent biological activity determination + assay that detects antigen activation. + meaning: OBI:0001640 + title: assay measuring epitope specific immunoglobulin-mediated antigen activation + OBI:0001641: + text: OBI:0001641 + description: A B cell epitope specific activation of additional immune response + assay that detects complement-dependent cytotoxicity in vitro . + meaning: OBI:0001641 + title: assay measuring epitope specific complement-dependent cytotoxicity + OBI:0001642: + text: OBI:0001642 + description: A B cell epitope specific activation of additional immune response + assay that detects antibody-dependent cellular cytotoxicity in vitro. + meaning: OBI:0001642 + title: assay measuring epitope specific antibody-dependent cellular cytotoxicity + OBI:0001643: + text: OBI:0001643 + description: A B cell epitope dependent biological activity determination + assay that detects neutralization of the antigen. + meaning: OBI:0001643 + title: assay measuring epitope specific immunoglobulin-mediated neutralization + OBI:0001644: + text: OBI:0001644 + description: A B cell epitope specific activation of additional immune response + assay that detects opsonization in vitro . + meaning: OBI:0001644 + title: assay measuring epitope specific opsonization + OBI:0001645: + text: OBI:0001645 + description: A calorimetric binding assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001645 + title: calorimetry assay measuring binding of a B cell epitope:antibody complex + OBI:0001646: + text: OBI:0001646 + description: An electron-microscopy 3D molecular structure determination assay + that characterizes the 3-dimensional molecular structrue of a B cell epitope:antibody + complex + meaning: OBI:0001646 + title: electron microscopy assay determining the 3D structure of a B cell + epitope:antibody complex + OBI:0001647: + text: OBI:0001647 + description: A nuclear magnetic resonance 3D molecular structure determination + assay that characterizes the 3-dimensional structure of a B cell epitope:antibody + complex. + meaning: OBI:0001647 + title: NMR assay determining the 3D structure of a B cell epitope:antibody + complex + OBI:0001648: + text: OBI:0001648 + description: A cross-blocking assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001648 + title: cross blocking assay measuring binding of a B cell epitope:antibody + complex + OBI:0001649: + text: OBI:0001649 + description: A radio immuno assay that detects the binding of an antigen with + an antibody. + meaning: OBI:0001649 + title: RIA measuring binding of a B cell epitope:antibody complex + OBI:0001650: + text: OBI:0001650 + description: An immunoblot assay that detects the binding of an antigen with + an antibody. + meaning: OBI:0001650 + title: immunoblot assay measuring binding of a B cell epitope:antibody complex + OBI:0001651: + text: OBI:0001651 + description: A surface plasmon resonance binding assay that detects the binding + of an antigen with an antibody. + meaning: OBI:0001651 + title: plasmon resonance assay measuring binding of a B cell epitope:antibody + complex + OBI:0001652: + text: OBI:0001652 + description: An immuno staining assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001652 + title: immuno staining assay measuring binding of a B cell epitope:antibody + complex + OBI:0001653: + text: OBI:0001653 + description: An immunoprecipitation assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001653 + title: immunoprecipitation assay measuring binding of a B cell epitope:antibody + complex + OBI:0001654: + text: OBI:0001654 + description: A mass spectrometry assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001654 + title: mass spectrometry assay measuring binding of a B cell epitope:antibody + complex + OBI:0001655: + text: OBI:0001655 + description: A phage display binding assay that detects the binding of an + antigen with an antibody. + meaning: OBI:0001655 + title: phage display assay measuring binding of a B cell epitope:antibody + complex + OBI:0001656: + text: OBI:0001656 + description: An electron microscopy imaging assay that detects the binding + of an antigen with an antibody. + meaning: OBI:0001656 + title: electron microscopy assay measuring binding of a B cell epitope:antibody + complex + OBI:0001657: + text: OBI:0001657 + description: An enzyme-linked immunosorbent assay that detects the binding + of an antigen with an antibody. + meaning: OBI:0001657 + title: ELISA measuring binding of a B cell epitope:antibody complex + OBI:0001658: + text: OBI:0001658 + description: An enzyme-linked immunospot assay that detects the binding of + an antigen with an antibody. + meaning: OBI:0001658 + title: ELISPOT assay measuring binding of a B cell epitope:antibody complex + OBI:0001659: + text: OBI:0001659 + description: A flow cytometry assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001659 + title: flow cytometry assay measuring binding of a B cell epitope:antibody + complex + OBI:0001660: + text: OBI:0001660 + description: A flow cytometry assay that detects epitope specific granzyme + A release by T cells. + meaning: OBI:0001660 + title: intracellular material detection assay measuring epitope specific granzyme + A release by T cells + OBI:0001661: + text: OBI:0001661 + description: An analytical chromatography assay that detects the binding of + an antigen with an antibody. + meaning: OBI:0001661 + title: chromatography assay measuring binding of a B cell epitope:antibody + complex + OBI:0001662: + text: OBI:0001662 + description: A B cell epitope qualitative binding to antibody assay that uses + a nuclear magnetic resonance assay. + meaning: OBI:0001662 + title: NMR assay measuring binding of a B cell epitope:antibody complex + OBI:0001663: + text: OBI:0001663 + description: An enzyme-linked immunosorbent assay that detects epitope specific + granulysin release by T cells. + meaning: OBI:0001663 + title: ELISA measuring epitope specific granulysin release by T cells + OBI:0001664: + text: OBI:0001664 + description: A flow cytometry assay that detects epitope specific granulysin + release by T cells. + meaning: OBI:0001664 + title: intracellular material detection assay measuring epitope specific granulysin + release by T cells + OBI:0001665: + text: OBI:0001665 + description: A fluorescence detection assay that measures binding off rate + [koff] to detect direct binding of a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001665 + title: fluorescence detection assay measuring binding off rate [koff] to determine + direct binding of a cell-bound-MHC:ligand complex + OBI:0001666: + text: OBI:0001666 + description: A fluorescence detection assay that measures binding on rate + (kon) to detect direct binding of a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001666 + title: fluorescence detection assay measuring binding on rate [kon] to determine + direct binding of a cell-bound-MHC:ligand complex + OBI:0001667: + text: OBI:0001667 + description: A fluorescence detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to purified-MHC due to competition by the ligand under investigation and + provides IC50 values determined under assay conditions where the IC50 approximates + a KD value. + meaning: OBI:0001667 + title: fluorescence detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a purified-MHC:ligand complex approximated + by IC50 + OBI:0001668: + text: OBI:0001668 + description: A binding assay that screens membrane soluble proteins by fusion + of two integral membrane proteins (bait and prey) to two different ubiquitin + moieties. One moiety is also fused to a transcription factor (TF) that can + be cleaved off by ubiquitin specific proteases. Upon bait and prey interaction, + Nub and Cub-moieties assemble, reconstituting the split-ubiquitin. The reconstituted + split-ubiquitin molecule is recognized by ubiquitin specific proteases, + which cleave off the reporter protein, allowing it to induce the transcription + of reporter genes. + meaning: OBI:0001668 + title: split-ubiquitin assay + OBI:0001669: + text: OBI:0001669 + description: An assay that measures protein-protein interactions by separating + target proteins on an SDS-PAGE gel, transfering them to a solid substrate, + hybridizing with a protein probe and visualizing bound proteins using a + probe-directed antibody. This is a adaptation on the western blot assay. + meaning: OBI:0001669 + title: far-western blot assay + OBI:0001670: + text: OBI:0001670 + description: An assay that determines the presence and estimates abundance + of transcript species by first creating an homo or heteroduplex by adding + a specific, complementary sequence to the sequence of interest and then + exposing the mixture of ribonuclease, which will degrade only single stranded + molecules. A detection step will reveal if the sample contained a sequence + of interest. + meaning: OBI:0001670 + title: RNA protection assay + OBI:0001671: + text: OBI:0001671 + description: An assay that measures information about Protein-DNA or Protein-RNA + interactions using gel electrophoresis and relying on the fact the molecular + interactions will cause the heterodimer to be retarded on the gel when compared + to controls corresponding to protein extract alone and protein extract + + neutral nucleic acid. + meaning: OBI:0001671 + title: electrophoretic mobility shift assay + OBI:0001672: + text: OBI:0001672 + description: An assay which transiently disrupts gene transcripts by expressing + antisense RNA constructs or delivering RNA interfering molecules in cells. + meaning: OBI:0001672 + title: gene knock-down assay + OBI:0001673: + text: OBI:0001673 + description: A transcription profiling by RNA sequencing assay that is performed + using a very low amount (nanogram scale) of mRNA samples using Cap analysis + gene expression (CAGE). + meaning: OBI:0001673 + title: nano-cap analysis of gene expression assay + OBI:0001674: + text: OBI:0001674 + description: A transcription profiling by RNA sequencing assay which measures + RNA transcript abundances in biological samples by extracting 5' ends of + capped transcripts, RTPCR and sequence those. Copy numbers of CAGE tags + provide a way of quantification and provide a measure of expression of the + transcriptome + meaning: OBI:0001674 + title: cap analysis of gene expression assay + OBI:0001675: + text: OBI:0001675 + description: An enzyme-linked immunosorbent assay that detects interleukin-17A + production by T cells. + meaning: OBI:0001675 + title: ELISA measuring epitope specific interleukin-17A production by T cells + OBI:0001676: + text: OBI:0001676 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-7 production by T cells. + meaning: OBI:0001676 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-7 production by T cells + OBI:0001679: + text: OBI:0001679 + description: An assay that detects protein protein interactions and protein + DNA interactions by testing for physical interactions (such as binding) + between two proteins or a single protein and a DNA molecule, respectively. + The premise behind the test is the activation of downstream reporter gene(s) + by the binding of a transcription factor onto an upstream activating sequence + (UAS). For two-hybrid screening, the transcription factor is split into + two separate fragments, called the binding domain (BD) and activating domain + (AD). The BD is the domain responsible for binding to the UAS and the AD + is the domain responsible for the activation of transcription. The Y2H is + thus a protein-fragment complementation assay. + meaning: OBI:0001679 + title: yeast 2-hybrid assay + OBI:0001680: + text: OBI:0001680 + description: A binding assay that detects interacting proteins for a targeted + domain where mammalian guanyl nucleotide exchange factor (GEF) Sos is recruited + to the Saccharomyces cerevisiae plasma membrane harboring a temperature-sensitive + Ras GEF, Cdc25-2, allowing growth at the nonpermissive temperature using + the Sos recruitment system, a kind of yeast 2 hybrid system. + meaning: OBI:0001680 + title: Sos-recruitment assay + OBI:0001681: + text: OBI:0001681 + description: An assay that determines protein DNA interactions using a single + fusion protein in which the activating domain is linked directly to the + binding domain. + meaning: OBI:0001681 + title: yeast one-hybrid assay + OBI:0001682: + text: OBI:0001682 + description: An assay that identifies the sequence-specific target site of + a DNA-binding domain. In this system, a given transcription factor (TF) + is expressed as a fusion to a subunit of RNA polymerase. In parallel, a + library of randomized oligonucleotides representing potential TF target + sequences, is cloned into a separate vector containing the selectable genes + HIS3 and URA3. If the DNA-binding domain (bait) binds a potential DNA target + site (prey) in vivo, it will recruit RNA polymerase to the promoter and + activate transcription of the reporter genes in that clone. The two reporter + genes, HIS3 and URA3, allow for positive and negative selections, respectively. + At the end of the process, positive clones are sequenced and examined with + motif-finding tools in order to resolve the favoured DNA target sequence + meaning: OBI:0001682 + title: bacterial one-hybrid assay + OBI:0001683: + text: OBI:0001683 + description: An in-situ hybridization assay that uses fluorescence to detect + chromosomal integrity + meaning: OBI:0001683 + title: chromosome organization assay by fluorescence in-situ hybridization + OBI:0001684: + text: OBI:0001684 + description: An assay that uses initial modification of DNA by sodium bisulfite, + converting all unmethylated, but not methylated, cytosines to uracil, and + subsequent amplification with primers specific for methylated versus unmethylated + DNA. + meaning: OBI:0001684 + title: methylation-specific polymerase chain reaction assay + OBI:0001685: + text: OBI:0001685 + description: An assay that estimates genome-wide DNA methylation and measures + methylation of DNA sequences. AIMS is based on the differential enzymatic + digestion of genomic DNA with methylation-sensitive and methylation-insensitive + isoschizomers followed by restrained PCR amplification of methylated sequences. + meaning: OBI:0001685 + title: amplification of intermethylated sites assay + OBI:0001686: + text: OBI:0001686 + description: An assay that localizes a specific DNA or RNA sequence within + a portion or section of tissue using artificially induced nucleic hybridization. + meaning: OBI:0001686 + title: in-situ hybridization assay + OBI:0001689: + text: OBI:0001689 + description: 'An assay which uses compound cytochalasin (CHEBI: 23528) to + block actin polymerization-dependent cell motility (GO:0070358) and actin + filament polymerization (GO:0030041).' + meaning: OBI:0001689 + title: cytochalasin-induced inhibition of actin polymerization assay + OBI:0001692: + text: OBI:0001692 + description: An efficacy of B cell epitope intervention experiment that uses + a epitope protection experiment based on reduction of fertility. + meaning: OBI:0001692 + title: in vivo assay measuring B cell epitope specific protection from fertility + OBI:0001693: + text: OBI:0001693 + description: An efficacy of B cell epitope intervention experiment that uses + a tolerance induction intervention experiment. + meaning: OBI:0001693 + title: in vivo assay measuring B cell epitope specific tolerance induction + OBI:0001694: + text: OBI:0001694 + description: An efficacy of B cell epitope intervention experiment that detects + a hypersensitivity response by monitoring skin reactions. + meaning: OBI:0001694 + title: in vivo assay measuring B cell epitope specific induction of hypersensitivity + OBI:0001695: + text: OBI:0001695 + description: A B cell epitope specific activation of additional immune response + assay that detects agglutination in vitro. + meaning: OBI:0001695 + title: assay measuring epitope specific immune complex formation + OBI:0001696: + text: OBI:0001696 + description: An in vivo assay measuring B cell epitope specific protection + from other challenge using survival. + meaning: OBI:0001696 + title: in vivo assay measuring B cell epitope specific protection based on + survival + OBI:0001697: + text: OBI:0001697 + description: An efficacy of B cell epitope intervention experiment that detects + a decrease in disease. + meaning: OBI:0001697 + title: in vivo assay measuring B cell epitope specific treatment of disease + OBI:0001698: + text: OBI:0001698 + description: A B cell epitope dependent biological activity determination + assay that uses an in vivo intervention experiment. + meaning: OBI:0001698 + title: assay measuring B cell epitope specific in vivo activity + OBI:0001699: + text: OBI:0001699 + description: A competitive inhibition of binding assay in which two antibodies + that are known to bind the same antigen are tested for the ability of one + antibody to inhibit binding of the other antibody to the antigen, thereby + determining if they have overlapping binding sites. + meaning: OBI:0001699 + title: antibody cross-blocking assay + OBI:0001700: + text: OBI:0001700 + description: An analyte assay in which an input material is mixed with antibodies + and bound antigen:antibody complexes are separated out using immunoprecipitation. + Either the antibody has known specificy, and the antigen mixture is tested + for the presence of a specific antigen, or the antigen solution is well + defined and the antibody solution is tested for the presence of antigen + specific antibodies. + meaning: OBI:0001700 + title: immunoprecipitation assay + OBI:0001701: + text: OBI:0001701 + description: A B cell epitope qualitative binding to antibody assay that measures + the ability of an antigen to inhibit antibody binding to a known ligand. + meaning: OBI:0001701 + title: antigen inhibition assay measuring binding of a B cell epitope:antibody + complex + OBI:0001703: + text: OBI:0001703 + description: An assay that detects the binding of an antigen with an antibody, + and produces a qualitative measurement of the binding as an output. + meaning: OBI:0001703 + title: assay measuring qualitative binding of a B cell epitope:antibody complex + OBI:0001704: + text: OBI:0001704 + description: A B cell epitope dependent biological activity determination + assay that detects secondary in vitro activity. + meaning: OBI:0001704 + title: assay measuring epitope specific activation of additional immune response + in vitro + OBI:0001705: + text: OBI:0001705 + description: A B cell epitope dependent biological activity determination + assay that detects inhibition of the antibody's activity by the antigen. + meaning: OBI:0001705 + title: assay measuring epitope specific antigen inhibition of antibody activity + OBI:0001706: + text: OBI:0001706 + description: A B cell epitope assay that measures the immune response process + resulting from the binding of an antibody receptor to epitope or recognition + of the epitope. + meaning: OBI:0001706 + title: assay measuring biological activity resulting from B cell epitope:antibody + binding + OBI:0001708: + text: OBI:0001708 + description: A B cell epitope binding constant determination assay that measures + the dissociation constant KD. + meaning: OBI:0001708 + title: assay measuring the dissociation constant [KD] of a B cell epitope:antibody + complex + OBI:0001709: + text: OBI:0001709 + description: A B cell epitope recognition assay that quantitavely characterizes + the binding of an antibody / BCR with a ligand by determining a binding + constant. + meaning: OBI:0001709 + title: assay measuring a binding constant of a B cell epitope:antibody complex + OBI:0001710: + text: OBI:0001710 + description: An efficacy of B cell epitope intervention experiment that uses + a epitope protection experiment. + meaning: OBI:0001710 + title: in vivo assay measuring B cell epitope specific protection from challenge + OBI:0001711: + text: OBI:0001711 + description: An efficacy of B cell epitope intervention experiment that uses + a disease exacerbation in vivo intervention experiment. + meaning: OBI:0001711 + title: in vivo assay measuring B cell epitope specific disease exacerbation + OBI:0001718: + text: OBI:0001718 + description: A B cell epitope binding constant determination assay that measures + the on rate. + meaning: OBI:0001718 + title: assay measuring the on rate [kon] of a B cell epitope:antibody complex + OBI:0001719: + text: OBI:0001719 + description: A B cell epitope binding constant determination assay that measures + the association constant KA. + meaning: OBI:0001719 + title: assay measuring the association constant [KA] of a B cell epitope:antibody + complex + OBI:0001721: + text: OBI:0001721 + description: A 3D structure determination of bound molecular complex assay + that characterizes the 3-dimensional structure of an antigen:antobody complex. + meaning: OBI:0001721 + title: 3D molecular structure determination assay of an antigen:antibody complex + OBI:0001723: + text: OBI:0001723 + description: A B cell epitope binding constant determination assay that measures + the off rate. + meaning: OBI:0001723 + title: assay measuring the off rate [koff] of a B cell epitope:antibody complex + OBI:0001724: + text: OBI:0001724 + description: A viral hemagglutination inhibition assay that detects the binding + of an antigen with an antibody. + meaning: OBI:0001724 + title: viral hemagglutination inhibition assay measuring binding of a B cell + epitope:antibody complex + OBI:0001726: + text: OBI:0001726 + description: A fluorescence quenching assay that detects the binding of an + antigen with an antibody. + meaning: OBI:0001726 + title: quenching assay measuring binding of a B cell epitope:antibody complex + OBI:0001727: + text: OBI:0001727 + description: A radio immuno assay that measures the dissociation constant + [KD] of an antigen binding with an antibody. + meaning: OBI:0001727 + title: RIA measuring the dissociation constant [KD] of a B cell epitope:antibody + complex + OBI:0001728: + text: OBI:0001728 + description: An enzyme-linked immunosorbent assay that measures the dissociation + constant [KD] of an antigen binding with an antibody. + meaning: OBI:0001728 + title: ELISA measuring the dissociation constant [KD] of a B cell epitope:antibody + complex + OBI:0001729: + text: OBI:0001729 + description: A fluorescence quenching assay that measures the dissociation + constant [KD] of an antigen binding with an antibody. + meaning: OBI:0001729 + title: quenching assay measuring the dissociation constant [KD] of a B cell + epitope:antibody complex + OBI:0001730: + text: OBI:0001730 + description: A surface plasmon resonance binding assay that measures the association + constant [KA] of an antigen binding with an antibody. + meaning: OBI:0001730 + title: surface plasmon resonance assay measuring the association constant + [KA] of a B cell epitope:antibody complex + OBI:0001731: + text: OBI:0001731 + description: A surface plasmon resonance binding assay that measures the dissociation + constant [KD] of an antigen binding with an antibody. + meaning: OBI:0001731 + title: surface plasmon resonance assay measuring the dissociation constant + [KD] of a B cell epitope:antibody complex + OBI:0001732: + text: OBI:0001732 + description: A fluorescence quenching assay that measures the association + constant [KA] of an antigen binding with an antibody. + meaning: OBI:0001732 + title: quenching assay measuring the association constant [KA] of a B cell + epitope:antibody complex + OBI:0001733: + text: OBI:0001733 + description: A calorimetric binding assay that measures the association constant + [KA] of an antigen binding with an antibody. + meaning: OBI:0001733 + title: calorimetry assay measuring the association constant [KA] of a B cell + epitope:antibody complex + OBI:0001734: + text: OBI:0001734 + description: A calorimetric binding assay that measures the dissociation constant + [KD] of an antigen binding with an antibody. + meaning: OBI:0001734 + title: calorimetry assay measuring the dissociation constant [KD] of a B cell + epitope:antibody complex + OBI:0001735: + text: OBI:0001735 + description: An enzyme-linked immunosorbent assay that measures the association + constant [KA] of an antigen binding with an antibody. + meaning: OBI:0001735 + title: ELISA measuring the association constant [KA] of a B cell epitope:antibody + complex + OBI:0001736: + text: OBI:0001736 + description: A radio immuno assay that measures the association constant [KA] + of an antigen binding with an antibody. + meaning: OBI:0001736 + title: RIA measuring the association constant [KA] of a B cell epitope:antibody + complex + OBI:0001738: + text: OBI:0001738 + description: A X-ray crystallography 3D molecular structure determination + assay that characterizes the 3-dimensional molecular structrue of a B cell + epitope:antibody complex. + meaning: OBI:0001738 + title: X-ray crystallography assay determining the 3D structure of a B cell + epitope:antibody complex + OBI:0001739: + text: OBI:0001739 + description: A surface plasmon resonance binding assay that measures the off + rate [koff] of an antigen binding with an antibody. + meaning: OBI:0001739 + title: surface plasmon resonance assay measuring the off rate [koff] of a + B cell epitope:antibody complex + OBI:0001740: + text: OBI:0001740 + description: A fluorescence quenching assay that measures the off rate [koff] + of an antigen binding with an antibody. + meaning: OBI:0001740 + title: quenching assay measuring the off rate [koff] of a B cell epitope:antibody + complex + OBI:0001741: + text: OBI:0001741 + description: A surface plasmon resonance binding assay that measures the on + rate [kon] of an antigen binding with an antibody. + meaning: OBI:0001741 + title: surface plasmon resonance assay measuring the on rate [kon] of a B + cell epitope:antibody complex + OBI:0001742: + text: OBI:0001742 + description: A fluorescence quenching assay that measures the on rate [kon] + of an antigen binding with an antibody. + meaning: OBI:0001742 + title: quenching assay measuring the on rate [kon] of a B cell epitope:antibody + complex + OBI:0001743: + text: OBI:0001743 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-1 beta production by T cells. + meaning: OBI:0001743 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-1 beta production by T cells + OBI:0001744: + text: OBI:0001744 + description: A flow cytometry assay that detects interleukin-1 alpha production + by T cells. + meaning: OBI:0001744 + title: intracellular cytokine staining assay measuring epitope specific interleukin-1 + alpha production by T cells + OBI:0001745: + text: OBI:0001745 + description: An enzyme-linked immunospot assay that detects interleukin-1 + alpha production by T cells. + meaning: OBI:0001745 + title: ELISPOT assay measuring epitope specific interleukin-1 alpha production + by T cells + OBI:0001746: + text: OBI:0001746 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-1 alpha production by T cells. + meaning: OBI:0001746 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-1 alpha production by T cells + OBI:0001747: + text: OBI:0001747 + description: A cytometric bead array assay that detects interleukin-1 alpha + production by T cells. + meaning: OBI:0001747 + title: cytometric bead array assay measuring epitope specific interleukin-1 + alpha production by T cells + OBI:0001748: + text: OBI:0001748 + description: An enzyme-linked immunospot assay that detects interferon-beta + production by T cells. + meaning: OBI:0001748 + title: ELISPOT assay measuring epitope specific interferon-beta production + by T cells + OBI:0001749: + text: OBI:0001749 + description: A flow cytometry assay that detects interferon-beta production + by T cells. + meaning: OBI:0001749 + title: intracellular cytokine staining assay measuring epitope specific interferon-beta + production by T cells + OBI:0001750: + text: OBI:0001750 + description: A flow cytometry assay that detects granulocyte colony stimulating + factor production by T cells. + meaning: OBI:0001750 + title: intracellular cytokine staining assay measuring epitope specific granulocyte + colony stimulating factor production by T cells + OBI:0001751: + text: OBI:0001751 + description: An enzyme-linked immunosorbent assay that detects interferon-beta + production by T cells. + meaning: OBI:0001751 + title: ELISA measuring epitope specific interferon-beta production by T cells + OBI:0001752: + text: OBI:0001752 + description: A detection of specific nucleic acid polymers with complementary + probes that detects granulocyte colony stimulating factor production by + T cells. + meaning: OBI:0001752 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific granulocyte colony stimulating factor production + by T cells + OBI:0001753: + text: OBI:0001753 + description: An enzyme-linked immunospot assay that detects granulocyte colony + stimulating factor production by T cells. + meaning: OBI:0001753 + title: ELISPOT assay measuring epitope specific granulocyte colony stimulating + factor production by T cells + OBI:0001754: + text: OBI:0001754 + description: A cytometric bead array assay that detects chemokine (C-X-C motif) + ligand 9 production by T cells. + meaning: OBI:0001754 + title: cytometric bead array assay measuring epitope specific chemokine (C-X-C + motif) ligand 9 production by T cells + OBI:0001756: + text: OBI:0001756 + description: An enzyme-linked immunospot assay that detects chemokine (C-X-C + motif) ligand 9 production by T cells. + meaning: OBI:0001756 + title: ELISPOT assay measuring epitope specific chemokine (C-X-C motif) ligand + 9 production by T cells + OBI:0001757: + text: OBI:0001757 + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-X-C motif) ligand 9 production by T cells. + meaning: OBI:0001757 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-X-C motif) ligand 9 production by + T cells + OBI:0001758: + text: OBI:0001758 + description: An enzyme-linked immunospot assay that detects chemokine (C-C + motif) ligand 4 production by T cells. + meaning: OBI:0001758 + title: ELISPOT assay measuring epitope specific chemokine (C-C motif) ligand + 4 production by T cells + OBI:0001759: + text: OBI:0001759 + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-X-C motif) ligand 12 production by T cells. + meaning: OBI:0001759 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-X-C motif) ligand 12 production + by T cells + OBI:0001760: + text: OBI:0001760 + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-X-C motif) ligand 13 production by T cells. + meaning: OBI:0001760 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-X-C motif) ligand 13 production + by T cells + OBI:0001761: + text: OBI:0001761 + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-X-C motif) ligand 16 production by T cells. + meaning: OBI:0001761 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-X-C motif) ligand 16 production + by T cells + OBI:0001762: + text: OBI:0001762 + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 21 production by T cells. + meaning: OBI:0001762 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 21 production by + T cells + OBI:0001763: + text: OBI:0001763 + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 22 production by T cells. + meaning: OBI:0001763 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 22 production by + T cells + OBI:0001764: + text: OBI:0001764 + description: A cytometric bead array assay that detects chemokine (C-C motif) + ligand 4 production by T cells. + meaning: OBI:0001764 + title: cytometric bead array assay measuring epitope specific chemokine (C-C + motif) ligand 4 production by T cells + OBI:0001765: + text: OBI:0001765 + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 4 production by T cells. + meaning: OBI:0001765 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 4 production by + T cells + OBI:0001766: + text: OBI:0001766 + description: A detection of specific nucleic acid polymers with complementary + probes that detects vascular endothelial growth factor production by T cells. + meaning: OBI:0001766 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific vascular endothelial growth factor production + by T cells + OBI:0001767: + text: OBI:0001767 + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 19 production by T cells. + meaning: OBI:0001767 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 19 production by + T cells + OBI:0001768: + text: OBI:0001768 + description: A flow cytometry assay that detects chemokine (C-C motif) ligand + 1 production by T cells. + meaning: OBI:0001768 + title: intracellular cytokine staining assay measuring epitope specific chemokine + (C-C motif) ligand 1 production by T cells + OBI:0001770: + text: OBI:0001770 + description: A flow cytometry assay that detects vascular endothelial growth + factor production by T cells. + meaning: OBI:0001770 + title: intracellular cytokine staining assay measuring epitope specific vascular + endothelial growth factor production by T cells + OBI:0001771: + text: OBI:0001771 + description: An enzyme-linked immunospot assay that detects vascular endothelial + growth factor production by T cells. + meaning: OBI:0001771 + title: ELISPOT assay measuring epitope specific vascular endothelial growth + factor production by T cells + OBI:0001772: + text: OBI:0001772 + description: An assay of epitope specific interleukin-17 production by T cells + that detects interleukin-17F production. + meaning: OBI:0001772 + title: assay measuring epitope specific interleukin-17F production by T cells + OBI:0001773: + text: OBI:0001773 + description: An assay of epitope specific interleukin-17 production by T cells + that detects interleukin-17A production. + meaning: OBI:0001773 + title: assay measuring epitope specific interleukin-17A production by T cells + OBI:0001774: + text: OBI:0001774 + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-C motif) ligand 21 production by T cells. + meaning: OBI:0001774 + title: assay measuring epitope specific chemokine (C-C motif) ligand 21 production + by T cells + OBI:0001775: + text: OBI:0001775 + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-C motif) ligand 19 production by T cells. + meaning: OBI:0001775 + title: assay measuring epitope specific chemokine (C-C motif) ligand 19 production + by T cells + OBI:0001776: + text: OBI:0001776 + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-X-C motif) ligand 12 production by T cells. + meaning: OBI:0001776 + title: assay measuring epitope specific chemokine (C-X-C motif) ligand 12 + production by T cells + OBI:0001777: + text: OBI:0001777 + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-C motif) ligand 22 production by T cells. + meaning: OBI:0001777 + title: assay measuring epitope specific chemokine (C-C motif) ligand 22 production + by T cells + OBI:0001778: + text: OBI:0001778 + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-X-C motif) ligand 16 production by T cells. + meaning: OBI:0001778 + title: assay measuring epitope specific chemokine (C-X-C motif) ligand 16 + production by T cells + OBI:0001779: + text: OBI:0001779 + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-X-C motif) ligand 13 production by T cells. + meaning: OBI:0001779 + title: assay measuring epitope specific chemokine (C-X-C motif) ligand 13 + production by T cells + OBI:0001780: + text: OBI:0001780 + description: An enzyme-linked immunospot assay that detects macrophage inflammatory + protein-1 alpha production by T cells. + meaning: OBI:0001780 + title: ELISPOT assay measuring epitope specific macrophage inflammatory protein-1 + alpha production by T cells + OBI:0001781: + text: OBI:0001781 + description: A cytometric bead array assay that detects macrophage inflammatory + protein-1 gamma production by T cells. + meaning: OBI:0001781 + title: cytometric bead array assay measuring epitope specific macrophage inflammatory + protein-1 gamma production by T cells + OBI:0001782: + text: OBI:0001782 + description: A detection of specific nucleic acid polymers with complementary + probes that detects macrophage inflammatory protein-1 gamma production by + T cells. + meaning: OBI:0001782 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific macrophage inflammatory protein-1 gamma production + by T cells + OBI:0001783: + text: OBI:0001783 + description: A flow cytometry assay that detects monocyte chemotactic protein-1 + production by T cells. + meaning: OBI:0001783 + title: intracellular cytokine staining assay measuring epitope specific monocyte + chemotactic protein-1 production by T cells + OBI:0001784: + text: OBI:0001784 + description: An enzyme-linked immunospot assay that detects monocyte chemotactic + protein-1 production by T cells. + meaning: OBI:0001784 + title: ELISPOT assay measuring epitope specific monocyte chemotactic protein-1 + production by T cells + OBI:0001785: + text: OBI:0001785 + description: A flow cytometry assay that detects macrophage inflammatory protein-1 + gamma production by T cells. + meaning: OBI:0001785 + title: intracellular cytokine staining assay measuring epitope specific macrophage + inflammatory protein-1 gamma production by T cells + OBI:0001786: + text: OBI:0001786 + description: An enzyme-linked immunospot assay that detects inflammatory protein-1 + gamma production by T cells. + meaning: OBI:0001786 + title: ELISPOT assay measuring epitope specific macrophage inflammatory protein-1 + gamma production by T cells + OBI:0001787: + text: OBI:0001787 + description: A cytometric bead array assay that detects vascular endothelial + growth factor production by T cells. + meaning: OBI:0001787 + title: cytometric bead array assay measuring epitope specific vascular endothelial + growth factor production by T cells + OBI:0001788: + text: OBI:0001788 + description: A detection of specific nucleic acid polymers with complementary + probes that detects tumor necrosis factor superfamily cytokine production + by T cells. + meaning: OBI:0001788 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific tumor necrosis factor superfamily cytokine production + by T cells + OBI:0001789: + text: OBI:0001789 + description: A flow cytometry assay that detects RANTES production by T cells. + meaning: OBI:0001789 + title: intracellular cytokine staining assay measuring epitope specific RANTES + production by T cells + OBI:0001790: + text: OBI:0001790 + description: An enzyme-linked immunospot assay that detects RANTES production + by T cells. + meaning: OBI:0001790 + title: ELISPOT assay measuring epitope specific RANTES production by T cells + OBI:0001791: + text: OBI:0001791 + description: An enzyme-linked immunospot assay that detects lymphotoxin A + production by T cells. + meaning: OBI:0001791 + title: ELISPOT assay measuring epitope specific lymphotoxin A production by + T cells + OBI:0001792: + text: OBI:0001792 + description: A detection of specific nucleic acid polymers with complementary + probes that detects macrophage inflammatory protein-1 alpha production by + T cells. + meaning: OBI:0001792 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific macrophage inflammatory protein-1 alpha production + by T cells + OBI:0001793: + text: OBI:0001793 + description: A cytometric bead array assay that detects lymphotoxin A production + by T cells. + meaning: OBI:0001793 + title: cytometric bead array assay measuring epitope specific lymphotoxin + A production by T cells + OBI:0001794: + text: OBI:0001794 + description: A detection of specific nucleic acid polymers with complementary + probes that detects lymphotoxin A production by T cells. + meaning: OBI:0001794 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific lymphotoxin A production by T cells + OBI:0001795: + text: OBI:0001795 + description: An enzyme-linked immunospot assay that detects IP-10 production + by T cells. + meaning: OBI:0001795 + title: ELISPOT assay measuring epitope specific IP-10 production by T cells + OBI:0001796: + text: OBI:0001796 + description: A flow cytometry assay that detects IP-10 production by T cells. + meaning: OBI:0001796 + title: intracellular cytokine staining assay measuring epitope specific IP-10 + production by T cells + OBI:0001797: + text: OBI:0001797 + description: An enzyme-linked immunospot assay that detects interleukin-9 + production by T cells. + meaning: OBI:0001797 + title: ELISPOT assay measuring epitope specific interleukin-9 production by + T cells + OBI:0001798: + text: OBI:0001798 + description: A flow cytometry assay that detects interleukin-9 production + by T cells. + meaning: OBI:0001798 + title: intracellular cytokine staining assay measuring epitope specific interleukin-9 + production by T cells + OBI:0001799: + text: OBI:0001799 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-9 production by T cells. + meaning: OBI:0001799 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-9 production by T cells + OBI:0001800: + text: OBI:0001800 + description: An enzyme-linked immunospot assay that detects interleukin-8 + production by T cells. + meaning: OBI:0001800 + title: ELISPOT assay measuring epitope specific interleukin-8 production by + T cells + OBI:0001801: + text: OBI:0001801 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-8 production by T cells. + meaning: OBI:0001801 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-8 production by T cells + OBI:0001802: + text: OBI:0001802 + description: An enzyme-linked immunospot assay that detects interleukin-3 + production by T cells. + meaning: OBI:0001802 + title: ELISPOT assay measuring epitope specific interleukin-3 production by + T cells + OBI:0001803: + text: OBI:0001803 + description: An enzyme-linked immunosorbent assay that detects interleukin-7 + production by T cells. + meaning: OBI:0001803 + title: ELISA measuring epitope specific interleukin-7 production by T cells + OBI:0001804: + text: OBI:0001804 + description: An enzyme-linked immunospot assay that detects interleukin-7 + production by T cells. + meaning: OBI:0001804 + title: ELISPOT assay measuring epitope specific interleukin-7 production by + T cells + OBI:0001805: + text: OBI:0001805 + description: A flow cytometry assay that detects interleukin-7 production + by T cells. + meaning: OBI:0001805 + title: intracellular cytokine staining assay measuring epitope specific interleukin-7 + production by T cells + OBI:0001806: + text: OBI:0001806 + description: A flow cytometry assay that detects interleukin-27 production + by T cells. + meaning: OBI:0001806 + title: intracellular cytokine staining assay measuring epitope specific interleukin-27 + production by T cells + OBI:0001807: + text: OBI:0001807 + description: A cytometric bead array assay that detects interleukin-3 production + by T cells. + meaning: OBI:0001807 + title: cytometric bead array assay measuring epitope specific interleukin-3 + production by T cells + OBI:0001808: + text: OBI:0001808 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-3 production by T cells. + meaning: OBI:0001808 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-3 production by T cells + OBI:0001809: + text: OBI:0001809 + description: A T cell epitope specific cytotoxic T cell degranulation assay + that detects granzyme A release by T cells. + meaning: OBI:0001809 + title: assay measuring epitope specific granzyme A release by T cells + OBI:0001810: + text: OBI:0001810 + description: A T cell epitope specific cytotoxic T cell degranulation assay + that detects granulysin release by T cells. + meaning: OBI:0001810 + title: assay measuring epitope specific granulysin release by T cells + OBI:0001811: + text: OBI:0001811 + description: A cytometric bead array assay that detects interleukin-27 production + by T cells. + meaning: OBI:0001811 + title: cytometric bead array assay measuring epitope specific interleukin-27 + production by T cells + OBI:0001812: + text: OBI:0001812 + description: A flow cytometry assay that detects interleukin-23 production + by T cells. + meaning: OBI:0001812 + title: intracellular cytokine staining assay measuring epitope specific interleukin-23 + production by T cells + OBI:0001813: + text: OBI:0001813 + description: An enzyme-linked immunospot assay that detects interleukin-27 + production by T cells. + meaning: OBI:0001813 + title: ELISPOT assay measuring epitope specific interleukin-27 production + by T cells + OBI:0001814: + text: OBI:0001814 + description: An enzyme-linked immunosorbent assay that detects interleukin-27 + production by T cells. + meaning: OBI:0001814 + title: ELISA measuring epitope specific interleukin-27 production by T cells + OBI:0001815: + text: OBI:0001815 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-18 production by T cells. + meaning: OBI:0001815 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-18 production by T cells + OBI:0001817: + text: OBI:0001817 + description: An enzyme-linked immunospot assay that detects interleukin-18 + production by T cells. + meaning: OBI:0001817 + title: ELISPOT assay measuring epitope specific interleukin-18 production + by T cells + OBI:0001821: + text: OBI:0001821 + description: An enzyme-linked immunospot assay that detects interleukin-22 + production by T cells. + meaning: OBI:0001821 + title: ELISPOT assay measuring epitope specific interleukin-22 production + by T cells + OBI:0001822: + text: OBI:0001822 + description: An enzyme-linked immunospot assay that detects interleukin-23 + production by T cells. + meaning: OBI:0001822 + title: ELISPOT assay measuring epitope specific interleukin-23 production + by T cells + OBI:0001824: + text: OBI:0001824 + description: A flow cytometry assay that detects interleukin-18 production + by T cells. + meaning: OBI:0001824 + title: intracellular cytokine staining assay measuring epitope specific interleukin-18 + production by T cells + OBI:0001826: + text: OBI:0001826 + description: An enzyme-linked immunospot assay that detects interleukin-21 + production by T cells. + meaning: OBI:0001826 + title: ELISPOT assay measuring epitope specific interleukin-21 production + by T cells + OBI:0001827: + text: OBI:0001827 + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 1 production by T cells. + meaning: OBI:0001827 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 1 production by + T cells + OBI:0001828: + text: OBI:0001828 + description: A cytometric bead array assay that detects chemokine (C-C motif) + ligand 1 production by T cells. + meaning: OBI:0001828 + title: cytometric bead array assay measuring epitope specific chemokine (C-C + motif) ligand 1 production by T cells + OBI:0001829: + text: OBI:0001829 + description: An enzyme-linked immunospot assay that detects chemokine (C-C + motif) ligand 1 production by T cells. + meaning: OBI:0001829 + title: ELISPOT assay measuring epitope specific chemokine (C-C motif) ligand + 1 production by T cells + OBI:0001830: + text: OBI:0001830 + description: An enzyme-linked immunospot assay that detects interleukin-17F + production by T cells. + meaning: OBI:0001830 + title: ELISPOT assay measuring epitope specific interleukin-17F production + by T cells + OBI:0001831: + text: OBI:0001831 + description: An enzyme-linked immunosorbent assay that detects interleukin-17F + production by T cells. + meaning: OBI:0001831 + title: ELISA measuring epitope specific interleukin-17F production by T cells + OBI:0001832: + text: OBI:0001832 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-17F production by T cells. + meaning: OBI:0001832 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-17F production by T cells + OBI:0001833: + text: OBI:0001833 + description: An enzyme-linked immunospot assay that detects interleukin-17A + production by T cells. + meaning: OBI:0001833 + title: ELISPOT assay measuring epitope specific interleukin-17A production + by T cells + OBI:0001835: + text: OBI:0001835 + description: A cytometric bead array assay that detects interleukin-18 production + by T cells. + meaning: OBI:0001835 + title: cytometric bead array assay measuring epitope specific interleukin-18 + production by T cells + OBI:0001836: + text: OBI:0001836 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-16 production by T cells. + meaning: OBI:0001836 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-16 production by T cells + OBI:0001837: + text: OBI:0001837 + description: An enzyme-linked immunosorbent assay that detects interleukin-16 + production by T cells. + meaning: OBI:0001837 + title: ELISA measuring epitope specific interleukin-16 production by T cells + OBI:0001838: + text: OBI:0001838 + description: An enzyme-linked immunospot assay that detects interleukin-16 + production by T cells. + meaning: OBI:0001838 + title: ELISPOT assay measuring epitope specific interleukin-16 production + by T cells + OBI:0001839: + text: OBI:0001839 + description: A flow cytometry assay that detects interleukin-16 production + by T cells. + meaning: OBI:0001839 + title: intracellular cytokine staining assay measuring epitope specific interleukin-16 + production by T cells + OBI:0001840: + text: OBI:0001840 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-17A production by T cells. + meaning: OBI:0001840 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-17A production by T cells + OBI:0001841: + text: OBI:0001841 + description: A flow cytometry assay that detects interleukin-1 beta production + by T cells. + meaning: OBI:0001841 + title: intracellular cytokine staining assay measuring epitope specific interleukin-1 + beta production by T cells + OBI:0001842: + text: OBI:0001842 + description: An enzyme-linked immunospot assay that detects interleukin-1 + beta production by T cells. + meaning: OBI:0001842 + title: ELISPOT assay measuring epitope specific interleukin-1 beta production + by T cells + OBI:0001843: + text: OBI:0001843 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-15 production by T cells. + meaning: OBI:0001843 + title: detection of specific nucleic acids with complementary probes measuring + epitope specific interleukin-15 production by T cells + OBI:0001844: + text: OBI:0001844 + description: An enzyme-linked immunospot assay that detects interleukin-12 + production by T cells. + meaning: OBI:0001844 + title: ELISPOT assay measuring epitope specific interleukin-12 production + by T cells + OBI:0001845: + text: OBI:0001845 + description: A flow cytometry assay that detects interleukin-15 production + by T cells. + meaning: OBI:0001845 + title: intracellular cytokine staining assay measuring epitope specific interleukin-15 + production by T cells + OBI:0001846: + text: OBI:0001846 + description: An enzyme-linked immunospot assay that detects interleukin-15 + production by T cells. + meaning: OBI:0001846 + title: ELISPOT assay measuring epitope specific interleukin-15 production + by T cells + OBI:0001848: + text: OBI:0001848 + description: An assay that incorporates chromatin immunoprecipitation (ChIP)-based + enrichment, chromatin proximity ligation, Paired-End Tags, and high-throughput + sequencing to determine de novo long-range chromatin interactions genome-wide. + meaning: OBI:0001848 + title: chromatin interaction analysis by paired-end tag sequencing assay + OBI:0001849: + text: OBI:0001849 + description: An assay that incorporates Paired-End Tags and sequencing technology + to determine structural variants. + meaning: OBI:0001849 + title: structural analysis by paired-end tag sequencing assay + OBI:0001850: + text: OBI:0001850 + description: A transcription profiling by RNA sequencing assay that employs + paired-end sequencing of RNA transcripts to determine things such as gene + expression, gene structure, and alternative transcript structure. + meaning: OBI:0001850 + title: transcript analysis by paired-end tag sequencing assay + OBI:0001853: + text: OBI:0001853 + description: An assay that identifies the location of regulatory regions, + based on the genome-wide sequencing of regions super sensitive to cleavage + by DNase I. + meaning: OBI:0001853 + title: DNase I hypersensitive sites sequencing assay + OBI:0001857: + text: OBI:0001857 + description: An analyte assay that combines immunoprecipitation of an RNA-binding + protein and RNA-seq to identify mRNAs associated with selected RNA binding + proteins (RBPs). + meaning: OBI:0001857 + title: RNP (ribonuclear particle) immunoprecipitation high- throughput sequencing + assay + OBI:0001858: + text: OBI:0001858 + description: An analyte assay that employs UV-crosslinking between RNA and + a protein, followed by immunoprecipitation with antibodies for the protein, + fragmentation, and high-throughput screening for RNA sequences that interact + with a particular RNA-binding protein. + meaning: OBI:0001858 + title: cross-linking immunoprecipitation high-throughput sequencing assay + OBI:0001859: + text: OBI:0001859 + description: An assay to determine the sequences of those DNA regions in the + genome associated with regulatory activity. + meaning: OBI:0001859 + title: formaldehyde-assisted isolation of regulatory elements assay + OBI:0001861: + text: OBI:0001861 + description: An assay that identifies unmethylated CpGs using methylation + sensitive restriction enzymes to fragment DNA. + meaning: OBI:0001861 + title: methylation-sensitive restriction enzyme sequencing assay + OBI:0001862: + text: OBI:0001862 + description: A bisulfite sequencing assay that identifies genomic methylation + patterns using a bisulfite based protocol that enriches CG-rich parts of + the genome. + meaning: OBI:0001862 + title: reduced representation bisulfite sequencing assay + OBI:0001863: + text: OBI:0001863 + description: A bisulfite sequencing assay that identifies methylated cytosines + across the genome using high throughput sequencing. + meaning: OBI:0001863 + title: shotgun bisulfite-seq assay + OBI:0001864: + text: OBI:0001864 + description: A transcription profiling by RNA sequencing assay that identifies + transcription start sites (TSS), the quantification of their expression + and the characterization of their transcripts using high throughput sequencing. + meaning: OBI:0001864 + title: RNA Annotation and Mapping of Promoters for the Analysis of Gene Expression + assay + OBI:0001915: + text: OBI:0001915 + description: An assay which quantifies the timing of DNA replication as a + function of genome position using array technology. + meaning: OBI:0001915 + title: DNA replication timing by array assay + OBI:0001918: + text: OBI:0001918 + description: An assay that combines immunoprecipitation of an RNA-binding + protein and array technology to identify mRNAs associated with selected + RNA binding proteins (RBPs). + meaning: OBI:0001918 + title: RNA-binding protein immunoprecipitation array profiling assay + OBI:0001919: + text: OBI:0001919 + description: An assay that measures the organization of chromosomes at the + genome-wide scale. + meaning: OBI:0001919 + title: Carbon-copy chromosome conformation capture assay + OBI:0001920: + text: OBI:0001920 + description: An assay in which timing of DNA replication is quantified as + a function of genome position based on genome-wide sequencing. + meaning: OBI:0001920 + title: DNA replication timing by sequencing assay + OBI:0001921: + text: OBI:0001921 + description: An RNA-binding protein immunoprecipitation array profiling assay + that combines immunoprecipitation of an RNA-binding protein and RNA tiling + array to identify mRNAs associated with selected RNA binding proteins (RBPs). + meaning: OBI:0001921 + title: RNA-binding protein immunoprecipitation tiling array profiling assay + OBI:0001922: + text: OBI:0001922 + description: A microRNA profiling assay that analyzes the microRNA component + of the transcriptome using high throughput sequencing technology. + meaning: OBI:0001922 + title: microRNA profiling by high throughput sequencing assay + OBI:0001923: + text: OBI:0001923 + description: A sequencing assay that detremines amino acid sequences of proteins + using multiple rounds of mass spectrometry and molecule fragmentation. + meaning: OBI:0001923 + title: protein sequencing by tandem mass spectrometry assay + OBI:0001924: + text: OBI:0001924 + description: An assay that identifies nucleosome positioning by genome wide + sequencing of regions sensitive to digestion by micrococal nuclease + meaning: OBI:0001924 + title: micrococcal nuclease digestion followed by high throughput sequencing + assay + OBI:0001925: + text: OBI:0001925 + description: A ChIP-seq assay which uses immunoprecipitation to isolate protein + bound DNA followed by an exonuclease step to degrade DNA that is not protein + bound to provide greater resolution of the DNA binding site + meaning: OBI:0001925 + title: chromatin immunoprecipitation with exonuclease sequencing assay + OBI:0001926: + text: OBI:0001926 + description: A transcription profiling assay that quantifies the microRNA + species within a biological sample. + meaning: OBI:0001926 + title: microRNA profiling assay + OBI:0001954: + text: OBI:0001954 + description: An assay in which portions of chromatin, the ordered and organized + complex of DNA and its interaction partners that make up a chormosome, is + extracted and purified by immunoprecipitation with antibodies or tags, and + subsequently analyzed + meaning: OBI:0001954 + title: ChIP assay + OBI:0001956: + text: OBI:0001956 + description: An assay that produces data about protein-DNA interaction or + DNA epigenetic modification using immunoprecipitation + meaning: OBI:0001956 + title: assay using chromatin immunoprecipitation + OBI:0001960: + text: OBI:0001960 + description: An assay that dteremines taxonomic and community diversity information + by sequencing specific genomic regions used as marker of identity or diversity. + meaning: OBI:0001960 + title: taxonomic diversity assessment by targeted gene survey + OBI:0001976: + text: OBI:0001976 + description: A footprinting assay that uses a chemical reaction whereby a + covalently bonded hydrogen atom is replaced by a deuterium atom, or vice + versa in order to gather information about the solvent accessibility of + parts of a molecule and thus its tertiary structure. + meaning: OBI:0001976 + title: hydrogen/deuterium exchange footprinting assay + OBI:0001977: + text: OBI:0001977 + description: An assay that counts and/or measures characteristics of cells. + meaning: OBI:0001977 + title: cytometry assay + OBI:0001978: + text: OBI:0001978 + description: An analyte assay that detects specific molecules in an input + material by separating it using gel electrophoresis, transfering the separated + molecules to a membrane, and staining them with_ antibodies specific to + the analyte molecules. + meaning: OBI:0001978 + title: immunoblot assay + OBI:0001979: + text: OBI:0001979 + description: A binding assay in which the proximity of two entities is monitored + by measuring a fluorescent signal of one of the entities that gets reduced + if the two entities are cliose to each other. + meaning: OBI:0001979 + title: fluorescence quenching binding assay + OBI:0001980: + text: OBI:0001980 + description: An assay in which the effect of a targeted process (the intervention) + on an organism is tested. + meaning: OBI:0001980 + title: in vivo intervention experiment + OBI:0001981: + text: OBI:0001981 + description: An in vivo intervention experiment that tests the ability of + the intervention to increase the severity of a disease in the host. + meaning: OBI:0001981 + title: disease exacerbation in vivo intervention experiment + OBI:0001982: + text: OBI:0001982 + description: An in vivo intervention experiment that tests the ability of + the intervention to prevent occurrence of a disease in a host. + meaning: OBI:0001982 + title: protection from challenge in vivo intervention experiment + OBI:0001983: + text: OBI:0001983 + description: An in vivo intervention experiment that tests the ability of + the intervention to decrease an immune response. + meaning: OBI:0001983 + title: tolerance induction intervention experiment + OBI:0001984: + text: OBI:0001984 + description: An in vivo intervention experiment in which the ability of the + intervention to reduce or cure the effects of a disease are tested. + meaning: OBI:0001984 + title: treatment intervention experiment + OBI:0001985: + text: OBI:0001985 + description: An analyte assay where binding of the analyte to immobilized + matrix is measured. + meaning: OBI:0001985 + title: microarray assay + OBI:0001986: + text: OBI:0001986 + description: An immunostaining assay to detect and potentially localize antigens + within the cells of a tissue section. + meaning: OBI:0001986 + title: immunohistochemistry + OBI:0001987: + text: OBI:0001987 + description: A MHC binding constant determination assay measuring equilibrium + association constant (KA). + meaning: OBI:0001987 + title: assay measuring the association constant [KA] of a MHC:ligand complex + OBI:0001988: + text: OBI:0001988 + description: A MHC binding constant determination assay measuring equilibrium + dissociation constant (KD). + meaning: OBI:0001988 + title: assay measuring the dissociation constant [KD] of a MHC:ligand complex + OBI:0001989: + text: OBI:0001989 + description: A radioactivity detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to purified-MHC due to competition by the ligand under investigation. + meaning: OBI:0001989 + title: radioactivity detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a purified-MHC:ligand complex + OBI:0001990: + text: OBI:0001990 + description: A MHC binding constant determination assay measuring half life + of binding. + meaning: OBI:0001990 + title: assay measuring the half life of a MHC:ligand complex + OBI:0001991: + text: OBI:0001991 + description: A MHC binding constant determination assay measuring half maximal + effective concentration (EC50). + meaning: OBI:0001991 + title: assay measuring the half maximal effective concentration [EC50] of + a MHC:ligand complex + OBI:0001992: + text: OBI:0001992 + description: A MHC binding constant determination assay measuring half maximal + inhibitory concentration (IC50). + meaning: OBI:0001992 + title: assay measuring the half maximal inhibitory concentration [IC50] of + a MHC:ligand complex + OBI:0001993: + text: OBI:0001993 + description: A MHC binding constant determination assay measuring binding + off rate measurement data item (koff). + meaning: OBI:0001993 + title: assay measuring the off rate measurement [koff] of a MHC:ligand complex + OBI:0001994: + text: OBI:0001994 + description: A MHC binding constant determination assay measuring binding + on rate (kon). + meaning: OBI:0001994 + title: assay measuring the MHC ligand binding on rate [kon] of a MHC:ligand + complex + OBI:0001995: + text: OBI:0001995 + description: An analytical chromatography assay that measures the association + constant [KA] of an antigen binding with an antibody. + meaning: OBI:0001995 + title: chromatography assay measuring the association constant [KA] of a B + cell epitope:antibody complex + OBI:0001996: + text: OBI:0001996 + description: An analytical chromatography assay that measures the dissociation + constant [KD] of an antigen binding with an antibody. + meaning: OBI:0001996 + title: chromatography assay measuring the dissociation constant [KD] of a + B cell epitope:antibody complex + OBI:0001997: + text: OBI:0001997 + description: A hydrogen/deuterium exchange footprinting assay that detects + the binding of an antigen with an antibody. + meaning: OBI:0001997 + title: hydrogen/deuterium exchange footprinting assay measuring binding of + a B cell epitope:antibody complex + OBI:0001998: + text: OBI:0001998 + description: A immunohistochemistry assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001998 + title: immunohistochemistry assay measuring binding of a B cell epitope:antibody + complex + OBI:0001999: + text: OBI:0001999 + description: A 3D structure determination of bound molecular complex assay + that characterizes the 3-dimensional structure of a T cell epitope:MHC:TCR + complex. + meaning: OBI:0001999 + title: 3D molecular structure determination assay of a T cell epitope:MHC:TCR + complex + OBI:0002014: + text: OBI:0002014 + description: An epigenetic modification assay that identifies sites of DNA + methylation using ChIP-chip technologies. + meaning: OBI:0002014 + title: DNA methylation profiling by ChIP-chip assay + OBI:0002015: + text: OBI:0002015 + description: A transcription profiling assay that uses Massive Parallel Signature + Sequencing (MPSS). + meaning: OBI:0002015 + title: transcription profiling by MPSS assay + OBI:0002016: + text: OBI:0002016 + description: An epigenetic modification assay that identifies regions containing + specific histones and their modifications using ChIP-chip techniques. + meaning: OBI:0002016 + title: histone modification identification by ChIP-chip assay + OBI:0002017: + text: OBI:0002017 + description: An epigenetic modification assay that identifies regions containing + specific histones and their modifications using ChIP-Seq techniques. + meaning: OBI:0002017 + title: histone modification identification by ChIP-Seq assay + OBI:0002018: + text: OBI:0002018 + description: A transcription factor binding site assay that utilizes ChIP-chip + technology. + meaning: OBI:0002018 + title: transcription factor binding site identification by ChIP-chip assay + OBI:0002019: + text: OBI:0002019 + description: A transcription factor binding site assay that utilizes ChIP-seq + technology. + meaning: OBI:0002019 + title: transcription factor binding site identification by ChIP-Seq assay + OBI:0002020: + text: OBI:0002020 + description: An assay that identifies epigenetic modifications including histone + modifications, open chromatin, and DNA methylation. + meaning: OBI:0002020 + title: epigenetic modification assay + OBI:0002029: + text: OBI:0002029 + description: A transcription profiling by RNA sequencing assay that quantifies + RNA through creating short signature tags of the messages and ligating them + into a larger molecule that is then sequenced. + meaning: OBI:0002029 + title: serial analysis of gene expression assay + OBI:0002030: + text: OBI:0002030 + description: A genotyping by array assay that uses tiling array technology. + meaning: OBI:0002030 + title: genotyping by tiling array assay + OBI:0002031: + text: OBI:0002031 + description: A genotyping by array assay that uses SNP array technology. + meaning: OBI:0002031 + title: genotyping by SNP array assay + OBI:0002032: + text: OBI:0002032 + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that performs simultaneous in vitro profiling of the secondary structure + of thousands of RNA species at single nucleotide resolution using enzymatic + probing based on deep sequencing fragments of RNAs that were treated with + structure-specific enzymes + meaning: OBI:0002032 + title: parallel analysis of RNA structure assay + OBI:0002033: + text: OBI:0002033 + description: A translation profiling assay that combines transcript leader + sequencing with polysome fractionation. TATL-seq works by applying TL-seq + across fractions of a polysome gradient, generating TL-specific translational + measurements to identify how different transcript leader sequences effect + translation. + meaning: OBI:0002033 + title: translation-associated transcript leader sequencing assay + OBI:0002034: + text: OBI:0002034 + description: A transcription profiling by RNA sequencing assay that combines + enzymatic capture of m(7)G-capped mRNA 5' ends with high-throughput sequencing. + meaning: OBI:0002034 + title: transcript leader sequencing assay + OBI:0002035: + text: OBI:0002035 + description: A mass spectrometry assay that measures the absolute mass of + the cleaved peptides derived from an unknown protein of interest. These + masses are then compared to values for known protein sequences to identify + the unknown protein. + meaning: OBI:0002035 + title: peptide mass fingerprinting assay + OBI:0002036: + text: OBI:0002036 + description: An assay which aims to provide information about the in vivo + organization/structure of nucleic acids using chemical or enzymatic probes + using a microarray. + meaning: OBI:0002036 + title: array based nucleic acid structure mapping assay + OBI:0002037: + text: OBI:0002037 + description: An array based nucleic acid structure mapping assay that identifies + nucleosome positions genome wide, by detection of regions protected by nucleosomes + from digestion by micrococal nuclease using tiling array assays + meaning: OBI:0002037 + title: micrococcal nuclease digestion followed by tiling array assay + OBI:0002038: + text: OBI:0002038 + description: A translation profiling assay that sequences only mRNA protected + by the ribosome during translation and thus provides information on which + transcipts are undergoing active translation. + meaning: OBI:0002038 + title: ribosomal profiling by sequencing assay + OBI:0002039: + text: OBI:0002039 + description: An assay to capture the location of open chromatin, DNA-binding + proteins, individual nucleosomes and chromatin compaction at nucleotide + resolution by Tn5 transposase insertion. + meaning: OBI:0002039 + title: assay for transposase-accessible chromatin using sequencing + OBI:0002040: + text: OBI:0002040 + description: A detection of specific nucleic acids with complementary probes + assay that measures regions of the genome which are bound by a specific + RNA (or a by a ribonucleoprotein containing the RNA of interest) using high-throughput + sequencing. + meaning: OBI:0002040 + title: chromatin isolation by RNA purification sequencing assay + OBI:0002041: + text: OBI:0002041 + description: An assay that identifies the sequences that act as transcriptional + enhancers in a direct, quantitative, and genome-wide manner from sheared + genomic DNA. + meaning: OBI:0002041 + title: self-transcribing active regulatory region sequencing assay + OBI:0002042: + text: OBI:0002042 + description: A carbon-copy chromosome conformation capture assay to analyze + the organization of chromosomes in an unbiased, genome-wide manner using + high throughput sequening following carbon-copy chromosome conformation + capture. + meaning: OBI:0002042 + title: carbon-copy chromosome conformation capture assay followed by sequencing + assay + OBI:0002043: + text: OBI:0002043 + description: A cross-linking immunoprecipitation high-throughput sequencing + assay that identifies protein-RNA interactions using UV light to covalently + bind proteins and RNA molecules, allowing for a very stringent purification + of the linked protein-RNA complexes. + meaning: OBI:0002043 + title: individual-nucleotide resolution cross-linking and immunoprecipitation + sequencing assay + OBI:0002044: + text: OBI:0002044 + description: An assay that comprehensively characterizes sequence and structural + specificity of RNA binding proteins (RBPs). + meaning: OBI:0002044 + title: RNA Bind-n-Seq assay + OBI:0002045: + text: OBI:0002045 + description: A transcription profiling by RNA sequencing assay that quantitatively + profiles RNA polyadenylation at the transcriptome level. + meaning: OBI:0002045 + title: polyA-site sequencing assay + OBI:0002050: + text: OBI:0002050 + description: A 3D structure determination of bound molecular complex assay + that characterizes the 3-dimensional structure of a MHC:ligand complex. + meaning: OBI:0002050 + title: 3D molecular structure determination assay of a MHC:ligand complex + OBI:0002051: + text: OBI:0002051 + description: An in vivo assay measuring B cell epitope specific protection + from pathogen challenge using pathogen burden. + meaning: OBI:0002051 + title: in vivo assay measuring B cell epitope specific protection from infectious + challenge based on pathogen burden + OBI:0002052: + text: OBI:0002052 + description: An in vivo assay measuring B cell epitope specific protection + from tumor challenge using tumor burden. + meaning: OBI:0002052 + title: in vivo assay measuring B cell epitope specific protection after tumor + burden challenge + OBI:0002053: + text: OBI:0002053 + description: A microarray assay that detects the binding of an antigen with + an antibody. + meaning: OBI:0002053 + title: microarray assay measuring binding of a B cell epitope:antibody complex + OBI:0002054: + text: OBI:0002054 + description: A B cell epitope equilibrium dissociation constant (KD) determination + assay that uses a nuclear magnetic resonance assay. + meaning: OBI:0002054 + title: NMR assay measuring the dissociation constant [KD] of a B cell epitope:antibody + complex + OBI:0002055: + text: OBI:0002055 + description: A T cell epitope recognition assay that measures the immune response + process resulting from the binding of a T cell receptor to epitope or the + recongition of the epitope. + meaning: OBI:0002055 + title: assay measuring biological activity resulting from T cell epitope:MHC:TCR + binding + OBI:0002056: + text: OBI:0002056 + description: A T cell epitope specific cytokine production assay that detects + production of chemokine (C-C motif) ligand 17 production by T cells. + meaning: OBI:0002056 + title: assay measuring epitope specific chemokine (C-C motif) ligand 17 production + by T cells + OBI:0002057: + text: OBI:0002057 + description: A T cell epitope specific cytokine production assay that detects + macrophage migration inhibitory factor (MIF) production by T cells. + meaning: OBI:0002057 + title: assay measuring epitope specific macrophage migration inhibitory factor + (MIF) production by T cells + OBI:0002058: + text: OBI:0002058 + description: A T cell epitope specific cytokine production assay that detects + oncostatin M production by T cells. + meaning: OBI:0002058 + title: assay measuring epitope specific oncostatin M production by T cells + OBI:0002059: + text: OBI:0002059 + description: A T cell epitope recognition assay that quantitavely characterizes + the binding of a TCR with a ligand by determining a binding constant. + meaning: OBI:0002059 + title: assay measuring a binding constant of a T cell epitope:MHC:TCR complex + OBI:0002060: + text: OBI:0002060 + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 17 production by T cells. + meaning: OBI:0002060 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 17 production by + T cells + OBI:0002061: + text: OBI:0002061 + description: A cytometric bead array assay that detects chemokine (C-C motif) + ligand 22 production by T cells. + meaning: OBI:0002061 + title: cytometric bead array assay measuring epitope specific chemokine (C-C + motif) ligand 22 production by T cells + OBI:0002062: + text: OBI:0002062 + description: An in vitro cell killing assay that measures the killing of antigen + presenting cells (APC) by T cells whose TCR recognizes an epitope presented + by the APC. + meaning: OBI:0002062 + title: in vitro assay measuring epitope specific T cell killing + OBI:0002063: + text: OBI:0002063 + description: A cytometric bead array assay that detects epitope specific granzyme + A release by T cells. + meaning: OBI:0002063 + title: cytometric bead array assay measuring epitope specific granzyme A release + by T cells + OBI:0002064: + text: OBI:0002064 + description: A detection of specific nucleic acids with complementary probes + assay that detects epitope specific granzyme A release by T cells. + meaning: OBI:0002064 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific granzyme A release by T cells + OBI:0002065: + text: OBI:0002065 + description: A cytometric bead array assay that detects epitope specific granzyme + B release by T cells. + meaning: OBI:0002065 + title: cytometric bead array assay measuring epitope specific granzyme B release + by T cells + OBI:0002066: + text: OBI:0002066 + description: A detection of specific nucleic acids with complementary probes + assay that detects epitope specific granzyme B release by T cells + meaning: OBI:0002066 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific granzyme B release by T cells + OBI:0002067: + text: OBI:0002067 + description: A cytometric bead array assay that detects macrophage migration + inhibitory factor (MIF) production by T cells. + meaning: OBI:0002067 + title: cytometric bead array assay measuring epitope specific macrophage migration + inhibitory factor (MIF) production by T cells + OBI:0002068: + text: OBI:0002068 + description: A cytometric bead array assay that detects oncostatin M production + by T cells. + meaning: OBI:0002068 + title: cytometric bead array assay measuring epitope specific oncostatin M + production by T cells + OBI:0002069: + text: OBI:0002069 + description: An enzyme-linked immunospot assay that detects epitope specific + perforin release by T cells. + meaning: OBI:0002069 + title: ELISPOT assay measuring epitope specific perforin release by T cells + OBI:0002070: + text: OBI:0002070 + description: A T cell epitope specific proliferation assay that is performed + in vivo. + meaning: OBI:0002070 + title: in vivo assay measuring epitope specific proliferation of T cells + OBI:0002071: + text: OBI:0002071 + description: A T cell epitope specific proliferation assay that is performed + on cells in vitro. + meaning: OBI:0002071 + title: in vitro assay measuring epitope specific proliferation of T cells + OBI:0002072: + text: OBI:0002072 + description: An assay that detects the binding of a MHC molecule with a ligand, + and produces a qualitative measurement of the binding as an output. + meaning: OBI:0002072 + title: assay measuring qualitative binding of a MHC:ligand complex + OBI:0002073: + text: OBI:0002073 + description: An efficacy of T cell epitope intervention experiment that uses + a epitope protection experiment. + meaning: OBI:0002073 + title: in vivo assay measuring T cell epitope specific protection from challenge + OBI:0002074: + text: OBI:0002074 + description: T cell epitope dependent biological activity assay that detects + suppression of an in vitro response. + meaning: OBI:0002074 + title: assay measuring T cell epitope specific suppression in vitro + OBI:0002075: + text: OBI:0002075 + description: An immune epitope assay that characterizes the structrue of a + MHC-ligand complex, or detects the processing and presentation of a ligand + by an antigen presenting cell, or the binding of a ligand to an MHC molecule. + meaning: OBI:0002075 + title: MHC ligand assay + OBI:0002082: + text: OBI:0002082 + description: An assay that detects expression of a reporter gene that was + inserted under the control of a regulatory sequence of interest. + meaning: OBI:0002082 + title: reporter gene assay + OBI:0002083: + text: OBI:0002083 + description: A reporter gene assay that detects expression of a reporter gene + that was inserted under the control of an enhancer of interest. + meaning: OBI:0002083 + title: enhancer activity detection by reporter gene assay + OBI:0002084: + text: OBI:0002084 + description: A ChIP-seq assay that identifies regions of chromatin bound to + a chromatin modifying protein, e.g. a histone acetyltransferase. + meaning: OBI:0002084 + title: transcription cofactor activity region identification by ChIP-Seq assay + OBI:0002085: + text: OBI:0002085 + description: An in situ hybridization assay in which the location (e.g. anatomical/tissue) + of a transcript is detected by a multiplexed fluorescent in situ hybridization, + based on orthogonal amplification with hybridization chain reactions (HCR). + RNA probes complementary to mRNA targets trigger chain reactions in which + fluorophore-labeled RNA hairpins self-assemble into tethered fluorescent + amplification polymers. + meaning: OBI:0002085 + title: transcript expression location detection by hybridization chain reaction + assay + OBI:0002086: + text: OBI:0002086 + description: A bisulfite sequencing assay that identifies genomic methylation + patterns by using a bisulfite based protocol with the Tet enzyme to differentiate + 5-hydroxylmethylcytosine (5hmC) from 5-methylcytosine (5mC) through a step-wise + oxidative demethylation of 5mC, converting it to 5-carboxylcytosine (5caC) + while keeping 5hmC protected. + meaning: OBI:0002086 + title: Tet-assisted bisulfite sequencing assay + OBI:0002094: + text: OBI:0002094 + description: A bisulfite sequencing assay in which a whole-genome sequencing + library is prepared, bisulfite converted and amplified, followed by a capture + enriching for targeted bisulfite-converted DNA fragments that are are subsequently + identified by DNA sequencing. + meaning: OBI:0002094 + title: MethylC-Capture sequencing assay + OBI:0002096: + text: OBI:0002096 + description: A CFSE assay that detects T cell epitope specific proliferation + in vitro. + meaning: OBI:0002096 + title: carboxyfluorescein succinimidyl ester staining assay measuring epitope + specific proliferation of T cells + OBI:0002097: + text: OBI:0002097 + description: A T cell epitope binding constant determination assay that measures + the dissociation constant KD. + meaning: OBI:0002097 + title: assay measuring the dissociation constant [KD] of a T cell epitope:MHC:TCR + complex + OBI:0002098: + text: OBI:0002098 + description: A T cell epitope binding constant determination assay that measures + the on rate. + meaning: OBI:0002098 + title: assay measuring the on rate [kon] of a T cell epitope:MHC:TCR complex + OBI:0002099: + text: OBI:0002099 + description: A T cell epitope binding constant determination assay that measures + the off rate. + meaning: OBI:0002099 + title: assay measuring the off rate [koff] of a T cell epitope:MHC:TCR complex + OBI:0002100: + text: OBI:0002100 + description: A T cell epitope binding constant determination assay that measures + the association constant KA. + meaning: OBI:0002100 + title: assay measuring the association constant [KA] of a T cell epitope:MHC:TCR + complex + OBI:0002101: + text: OBI:0002101 + description: A small-angle scattering 3D molecular structure determination + assay that characterizes the 3-dimensional molecular structure of a B cell + epitope:antibody complex + meaning: OBI:0002101 + title: small-angle scattering assay determining the 3D structure of a B cell + epitope:antibody complex + OBI:0002102: + text: OBI:0002102 + description: A bio-layer interferometry assay that measures the on rate of + an antigen with an antibody. + meaning: OBI:0002102 + title: bio-layer interferometry assay measuring the on rate [kon] of a B cell + epitope:antibody complex + OBI:0002103: + text: OBI:0002103 + description: A bio-layer interferometry assay that measures the off rate of + an antigen with an antibody. + meaning: OBI:0002103 + title: bio-layer interferometry assay measuring the off rate [koff] of a B + cell epitope:antibody complex + OBI:0002104: + text: OBI:0002104 + description: A bio-layer interferometry assay that detects the binding of + an antigen with an antibody. + meaning: OBI:0002104 + title: bio-layer interferometry assay measuring binding of a B cell epitope:antibody + complex + OBI:0002105: + text: OBI:0002105 + description: A bio-layer interferometry assay that measures the dissociation + constant [KD] of an antigen with an antibody. + meaning: OBI:0002105 + title: bio-layer interferometry assay measuring the dissociation constant + [KD] of a B cell epitope:antibody complex + OBI:0002106: + text: OBI:0002106 + description: An assay using carboxyfluorescein succinimidyl ester staining. + meaning: OBI:0002106 + title: carboxyfluorescein succinimidyl ester staining assay + OBI:0002107: + text: OBI:0002107 + description: A binding assay that detects a shift in the interference pattern + reflected from a layer of immobilized material on the biosensor tip to measure + binding to- or dissociating from the material on the biosensor. + meaning: OBI:0002107 + title: bio-layer interferometry assay + OBI:0002108: + text: OBI:0002108 + description: A 3D molecular structure determination assay in which the scattering + pattern of a neutron or x-ray beam targeted at a material entity is recorded + at small angles relative to the incident beam to determine the size, shape + and structure of the material entity examined. + meaning: OBI:0002108 + title: small-angle scattering 3D molecular structure determination assay + OBI:0002111: + text: OBI:0002111 + description: An iCLIP assay that is enhanced to robustly identify protein-RNA + interactions with high efficiency through improvements in library preparation + of RNA fragments. + meaning: OBI:0002111 + title: enhanced cross-linking immunoprecipitation high-throughput sequencing + assay + OBI:0002112: + text: OBI:0002112 + description: A transcription profiling by RNA sequencing assay which is targeting + small RNA (< 200 bp) sequences such as, but not exclusive to, miRNAs using, + for example, small RNA library preparation kits. + meaning: OBI:0002112 + title: small RNA sequencing assay + OBI:0002113: + text: OBI:0002113 + description: A transcription profiling by RNA sequencing assay used to identify + spans of nascent transcription in the genome through isolation of recent + bromouridine (Bru) labelled RNAs. + meaning: OBI:0002113 + title: bromouridine labeling and sequencing assay + OBI:0002114: + text: OBI:0002114 + description: A transcription profiling by RNA sequencing assay used to identify + RNA populations of specific ages through isolation of RNAs first labelled + with bromouridine (Bru) followed by chasing in uridine for different periods + of time. + meaning: OBI:0002114 + title: bromouridine pulse-chase and sequencing assay + OBI:0002115: + text: OBI:0002115 + description: A cytometry assay in which the presence of molecules of interest + on or in cells is indicated by binding of antibodies labeled with rare earth + element tags which are detected by time-of-flight mass spectrometry. + meaning: OBI:0002115 + title: cytometry time of flight assay + OBI:0002116: + text: OBI:0002116 + description: An analytical chromatography assay that utilizes a high performance + liquid chromatography instrument for separation of compounts in a solution. + meaning: OBI:0002116 + title: high performance liquid chromatography assay + OBI:0002117: + text: OBI:0002117 + description: A DNA sequencing assay that intends to provide information about + the sequence of an entire genome of an organism. + meaning: OBI:0002117 + title: whole genome sequencing assay + OBI:0002118: + text: OBI:0002118 + description: A DNA sequencing assay that intends to provide information about + the sequence of the protein coding components of a genome (exons). + meaning: OBI:0002118 + title: exome sequencing assay + OBI:0002119: + text: OBI:0002119 + description: An imaging assay that utilizes a microscope to magnify features + of the visualized material of interest that are not visible to naked eye. + meaning: OBI:0002119 + title: microscopy assay + OBI:0002120: + text: OBI:0002120 + description: A cytometry assay where lymphocytes from two individuals are + co-cultured with the lymphocytes from one of the allogeneic individuals + (Responders) being labeled (with 3H Thymidine or BrdU) and the proliferation + of the labeled cells is measured, which is thought to reflect recognition + of histocompatibility antigens on the unlabeled cells (stimulators). + meaning: OBI:0002120 + title: mixed lymphocyte reaction assay + OBI:0002121: + text: OBI:0002121 + description: A genotyping assay in which the alleles of genes encoding for + killer cell immunoglobulin-like receptors are determined. + meaning: OBI:0002121 + title: killer cell immunoglobulin-like receptor typing assay + OBI:0002122: + text: OBI:0002122 + description: A genotyping assay in which the alleles of genes encoding for + major histocompatibility complex molecules are determined. + meaning: OBI:0002122 + title: major histocompatibility typing assay + OBI:0002132: + text: OBI:0002132 + description: An assay that detects differences in protein abundance using + samples that have been metabolically labeled in vivo with a stable non-radioactive + heavy isotope containing amino acid for a short period of time. After diluting + the pulsed cells into growth media without label, high resolution mass spectrometry-based + proteomics is used to analyze the time-dependent decay and determine protein + stability. + meaning: OBI:0002132 + title: pulse stable isotope labeling by amino acids in cell culture + OBI:0002133: + text: OBI:0002133 + description: A cytometric bead array assay that detects chemokine (C-C motif) + ligand 20 production by T cells. + meaning: OBI:0002133 + title: cytometric bead array assay measuring epitope specific chemokine (C-C + motif) ligand 20 production by T cells + OBI:0002134: + text: OBI:0002134 + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-C motif) ligand 20 production by T cells. + meaning: OBI:0002134 + title: assay measuring epitope specific chemokine (C-C motif) ligand 20 production + by T cells + OBI:0002140: + text: OBI:0002140 + description: An assay to determine the temperature of an evaluant. + meaning: OBI:0002140 + title: temperature measurement assay + OBI:0002141: + text: OBI:0002141 + description: An assay to determine the volume of an evaluant. + meaning: OBI:0002141 + title: volume measurement assay + OBI:0002142: + text: OBI:0002142 + description: A microRNA profiling assay using digital molecular barcoding + technology to quantify target microRNA molecules without the need for amplification. + meaning: OBI:0002142 + title: Nanostring nCounter miRNA expression assay + OBI:0002143: + text: OBI:0002143 + description: A transcription profiling by RNA sequencing assay used to identify + transcription start sites and active enhancer elements through isolation + of bromouridine (Bru) labelled RNAs after UV light exposure introduces transcription-blocking + lesions. + meaning: OBI:0002143 + title: bromouride labeling and sequencing after UV exposure + OBI:0002144: + text: OBI:0002144 + description: An assay which aims at identifying the endogenous population + of extrachromosomal circular DNA originating from a subset of genomic loci + and potentially having profound consequences on the regulatory and coding + capabilities of these regions. The assay includes creation of a library + out of the circular DNA molecules and subsequent sequencing using parallelized + sequencing methods. + meaning: OBI:0002144 + title: extrachromosomal circular DNA sequencing assay + OBI:0002145: + text: OBI:0002145 + description: An analyte assay that measures the presence or amount of antibodies + to a specified antigen. + meaning: OBI:0002145 + title: antigen specific antibodies assay + OBI:0002146: + text: OBI:0002146 + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to human immunodeficiency virus (HIV) antigens. + meaning: OBI:0002146 + title: HIV antibody assay + OBI:0002147: + text: OBI:0002147 + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to human immunodeficiency virus (HIV) group O antigens. + meaning: OBI:0002147 + title: HIV group O antibody assay + OBI:0002148: + text: OBI:0002148 + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to hepatitis B virus (HBV) surface antigens. + meaning: OBI:0002148 + title: surface HBV antibody assay + OBI:0002149: + text: OBI:0002149 + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to hepatitis B virus (HBV) core antigens. + meaning: OBI:0002149 + title: core HBV antibody assay + OBI:0002150: + text: OBI:0002150 + description: An antigen specific antibodies assay that is meant to detectimmunoglobulin + M (IgM) antibodies that bind to hepatitis B virus (HBV) core antigens. + meaning: OBI:0002150 + title: core HBV IgM antibody assay + OBI:0002151: + text: OBI:0002151 + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to Hepacivirus C (HCV) antigens. + meaning: OBI:0002151 + title: HCV antibody assay + OBI:0002152: + text: OBI:0002152 + description: An antigen specific antibodies assay that is meant to detect + immunoglobulin G (IgG) antibodies that bind to Epstein-Barr virus (EBV) + antigens. + meaning: OBI:0002152 + title: EBV IgG antibody assay + OBI:0002153: + text: OBI:0002153 + description: An antigen specific antibodies assay that is meant to detect + immunoglobulin M (IgM) antibodies that bind to Epstein-Barr virus (EBV) + antigens. + meaning: OBI:0002153 + title: EBV IgM antibody assay + OBI:0002154: + text: OBI:0002154 + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to cytomegalovirus (CMV) antigens. + meaning: OBI:0002154 + title: CMV antibody assay + OBI:0002155: + text: OBI:0002155 + description: An analyte assay that is meant to detect general antibodies that + react with substances that are produced by cellular damage caused by Treponema + pallidum indicating a syphilis infection. VDRL tests require a microscope + and can be done on cerebrospinal fluid as well as blood. + meaning: OBI:0002155 + title: venereal disease research laboratory test + OBI:0002156: + text: OBI:0002156 + description: An analyte assay that is meant to detect with the aid of carbon + or charcoal particles general antibodies that react with substances that + are produced by cellular damage caused by Treponema pallidum indicating + a syphilis infection. RPR tests can be done without a microscope. + meaning: OBI:0002156 + title: rapid plasma reagin test + OBI:0002157: + text: OBI:0002157 + description: An analyte assay that is meant to detect hepatitis B virus (HBV) + surface antigens. + meaning: OBI:0002157 + title: HBV surface antigen assay + OBI:0002158: + text: OBI:0002158 + description: An analyte assay that is meant to detect human immunodeficiency + virus (HIV-1) nucleic acids. + meaning: OBI:0002158 + title: HIV-1 nucleic acid testing + OBI:0002159: + text: OBI:0002159 + description: An analyte assay that is meant to detect hepatitis C virus (HCV) + nucleic acids. + meaning: OBI:0002159 + title: HCV nucleic acid testing + OBI:0002160: + text: OBI:0002160 + description: A ChIP-seq assay which leverages T7 promoter amplification to + allow low sample input and chromatin barcoding and pool-and-split multiplexing + for high-throughput, quantitative profiling of chromatin states. + meaning: OBI:0002160 + title: multiplexed indexed T7 ChIP-seq assay + OBI:0002161: + text: OBI:0002161 + description: A binding assay that identifies protein-binding sites on nucleic + acids by selecting high-affinity target ligands from a randomized pool. + The process is repeated in rounds, then the bound nucleic acids are separated + from the unbound nucleic acids and amplified by PCR._ + meaning: OBI:0002161 + title: systematic evolution of ligands by exponential enrichment assay + OBI:0002162: + text: OBI:0002162 + description: An assay that measures ligand binding and conformational changes + by the solvent accessibility of the backbone, bases, or side-chain structures + of macromolecules through their sensitivity to chemical or enzymatic cleavage + or modification reactions. + meaning: OBI:0002162 + title: footprinting assay + OBI:0002163: + text: OBI:0002163 + description: An enzymatic footprinting assay that determines protein-binding + sites on DNA by identifying bound fragments that are protected from DNAse + I-catalyzed hydrolysis + meaning: OBI:0002163 + title: DNAse footprinting assay + OBI:0002164: + text: OBI:0002164 + description: A binding assay that increases the expression of a reporter gene + in mammalian cells by proteins of interest attached to two portions of the + transcriptional activator, bringing those portions closer together. + meaning: OBI:0002164 + title: mammalian 2-hybrid assay + OBI:0002165: + text: OBI:0002165 + description: An assay that determines the specific location of a protein. + Subcellular localization is distinguished from tissue-based localization + based on the type of microscopy applied. + meaning: OBI:0002165 + title: protein localization assay + OBI:0002166: + text: OBI:0002166 + description: A protein localization assay that determines the specific location + of a protein in a living tissue sample. + meaning: OBI:0002166 + title: tissue-based protein localization assay + OBI:0002167: + text: OBI:0002167 + description: A protein localization assay that determines the specific subcellular + location of a protein. The location is visualized through electron microscopy. + meaning: OBI:0002167 + title: subcellular protein localization assay + OBI:0002168: + text: OBI:0002168 + description: An immunohistochemistry assay that uses antibodies to display + the specific subcellular location of proteins. + meaning: OBI:0002168 + title: subcellular protein immunohistochemistry assay + OBI:0002169: + text: OBI:0002169 + description: A ChIP assay that uses quantitative PCR to determine levels of + specific DNA in immunoprecipitated samples. + meaning: OBI:0002169 + title: ChIP-qPCR assay + OBI:0002170: + text: OBI:0002170 + description: A systematic evolution of ligands by exponential enrichment assay + that starts with a library derived from genomic DNA instead of synthetically + derived random DNA molecules. + meaning: OBI:0002170 + title: genomic SELEX + OBI:0002171: + text: OBI:0002171 + description: An analyte assay that detects molecules in a mixture dotted on + a membrane using DNA probes or antibodies. + meaning: OBI:0002171 + title: dot blot assay + OBI:0002172: + text: OBI:0002172 + description: A direct binding assay that detects interactions of labeled RNA + with immobilized protein on a membrane. + meaning: OBI:0002172 + title: Northwestern blot assay + OBI:0002173: + text: OBI:0002173 + description: A direct binding assay that detects interactions of labeled DNA + with immobilized protein on a membrane. + meaning: OBI:0002173 + title: Southwestern blot assay + OBI:0002174: + text: OBI:0002174 + description: An immuno staining assay in which samples of intact cells are + examined that have had most, if not all, of their surrounding extracellular + matrix removed + meaning: OBI:0002174 + title: immunocytochemistry + OBI:0002175: + text: OBI:0002175 + description: An analyte assay that detects ATP concentration through light + intensity when luciferase catalyzes the oxidation of luciferin in the presence + of ATP, magnesium ions, and molecular oxygen. + meaning: OBI:0002175 + title: ATP bioluminescence assay + OBI:0002176: + text: OBI:0002176 + description: An assay that measures the electrical properties of biological + cells or tissues. Typically, this assay will generate measurements of voltage + changes or electric current (or other associated variables such as impedence + or capacitance). + meaning: OBI:0002176 + title: electrophysiology assay + OBI:0002177: + text: OBI:0002177 + description: An intracellular electrophysiology assay where a glass micropipette + is sealed to the surface of the cell membrane as a recording electrode to + study ion channel activity. The key distinction of this technique is the + electrical resistance of the seal between the cell membrane and the pipette + is of the order 10-100 gigaohms, permitting high-resolution current measurements + over the cell membrane in several different standard configurations. + meaning: OBI:0002177 + title: patch clamp assay + OBI:0002178: + text: OBI:0002178 + description: A patch-clamp assay where the electrode is left in place on the + cell, as in cell-attached recordings, but the membrane patch has been perforated, + providing access from the interior of the pipette to the intracellular space + of the cell. Measurements made with this technique involve recording currents + through multiple channels simultaneously, over the membrane of the entire + cell. + meaning: OBI:0002178 + title: whole-cell patch clamp assay + OBI:0002179: + text: OBI:0002179 + description: A patch-clamp assay where the electrode is left in place on the + cell, and the membrane patch has been left intact been perforated. This + maintains the separation of the interior of the pipette to the intracellular + space of the cell. Measurements made with this technique involve recording + currents through multiple channels simultaneously, over the membrane of + the entire cell. + meaning: OBI:0002179 + title: cell-attached patch clamp assay + OBI:0002180: + text: OBI:0002180 + description: A patch-clamp assay where a patch of the membrane is attached + to the patch pipette, detached from the rest of the cell, and the cytosolic + surface of the membrane is exposed to the external media, or bath. This + provides the experimenter has access to the intracellular surface of the + membrane via the bath and can manipulate the environment at the intracellular + surface of single ion channels. For example, channels that are activated + by intracellular ligands can then be studied through a range of ligand concentrations. + meaning: OBI:0002180 + title: inside-out patch clamp assay + OBI:0002181: + text: OBI:0002181 + description: A patch-clamp assay where a patch of the membrane is attached + to the patch pipette. In this configuration, the external surface of the + cell membrane is exposed as the outside of the membrane patch relative to + the patch electrode. An outside-out patch starts with a gigaohm seal in + a whole-cell recording configuration. The electrode is slowly withdrawn + from the cell, until a fragment of membrane bulges away from the cell, which + detaches and reforms as a convex membrane on the end of the electrode, with + the original external surface of the membrane facing outward from the electrode. + This provides the experimenter with access to the extracellular surface + of the membrane via the bath and can manipulate the environment at the extracellular + surface of single ion channels. + meaning: OBI:0002181 + title: outside-out patch clamp assay + OBI:0002182: + text: OBI:0002182 + description: An cellular electrophysiology assay where the membrane potential + of a cell is controlled by the experimentalist. This is accomplished through + a feedback mechanism where any change in membrane potential is countered + by permitting electrical current to flow into or out of the cell. + meaning: OBI:0002182 + title: voltage clamp assay + OBI:0002183: + text: OBI:0002183 + description: The two electrode voltage clamp (TEVC) method utilizes two low-resistance + pipettes, one sensing voltage and the other injecting current. The microelectrodes + are filled with conductive solution and inserted into the cell to artificially + control membrane potential. The membrane acts as a dielectric as well as + a resistor, while the fluids on either side of the membrane function as + capacitors.[9] The microelectrodes compare the membrane potential against + a command voltage, giving an accurate reproduction of the currents flowing + across the membrane. Current readings can be used to analyze the electrical + response of the cell to different applications. This technique is mainly + used in the Oocyte preparation. + meaning: OBI:0002183 + title: two electrode voltage clamp assay + OBI:0002184: + text: OBI:0002184 + description: The cut-open oocyte Vaseline gap (COVG) voltage-clamp technique + is designed to solve weaknesses in the two elextrode voltage clamp by maximizing + the benefits of the Xenopus oocyte expression system by improving on clamp + speed, signal-to-noise ratio, and ability to effectively perfuse the oocyte. + In this way, it was possible to combine the most popular transient expression + system, and the associated benefits of molecular cloning and site-directed + mutagenesis, with the superior voltage-clamp properties of cut-open cell + techniques. + meaning: OBI:0002184 + title: cut open oocyte voltage clamp assay + OBI:0002185: + text: OBI:0002185 + description: The current clamp technique records the membrane potential by + injecting current into a cell through the recording electrode. Unlike in + the voltage clamp mode, where the membrane potential is held at a level + determined by the experimenter, in "current clamp" mode the membrane potential + is free to vary, and the amplifier records whatever voltage the cell generates + on its own or as a result of stimulation. This technique is used to study + how a cell responds when electric current enters a cell; this is important + for instance for understanding how neurons respond to neurotransmitters + that act by opening membrane ion channels. + meaning: OBI:0002185 + title: current clamp assay + OBI:0002186: + text: OBI:0002186 + description: An extracellular electrophysiology assay where electrodes are + mounted outside the brain (either on the surface of the scalp on onto the + brain surface itself during surgery) to measure the electrical field over + the external surface. + meaning: OBI:0002186 + title: electroencephalography + OBI:0002187: + text: OBI:0002187 + description: An extracellular electrophysiology assay where a single microelectrode + is placed in close proximity to a single neuron to measure voltage and current + changes over time. This is the technicque used by Hubel and Wiesel to measure + firing properties of primary visual cortex neurons in the 1950s in their + original Nobel-prize winning study. A classic, old technique. + meaning: OBI:0002187 + title: single-unit recording + OBI:0002188: + text: OBI:0002188 + description: An extracellular electrophysiology assay where a collection of + microelectrodes (often in an 'array' configuration) is placed into neural + tissue to measure the distribution of voltage and current changes for a + population of cells over time. + meaning: OBI:0002188 + title: multi-unit recording + OBI:0002189: + text: OBI:0002189 + description: An extracellular electrophysiology assay where a microelectrode + is placed in the extracellular space of brain tissue to measure action potential + and compared to an electrode either outside or inside that tissue. + meaning: OBI:0002189 + title: local field potential recording + OBI:0002436: + text: OBI:0002436 + description: An assay that identifies RNA binding proteins by cross-linking + RNA and proteins with UV light, then purifying the bound complexes by oligo(dT) + capture. Finally, the complexes are analyzed by mass spectrometry. + meaning: OBI:0002436 + title: RNA interactome capture + OBI:0002437: + text: OBI:0002437 + description: A fluorescence microscopy technique where the specimen under + investigation is fully bathed in light, as opposed to confocal microscopy + in which only a small portion of the specimen is illuminated. + meaning: OBI:0002437 + title: widefield microscopy assay + OBI:0002438: + text: OBI:0002438 + description: An assay that detects the proximity of chromosomal DNA through + the use of a ligation reaction in isolated nuclei. + meaning: OBI:0002438 + title: nuclear ligation assay + OBI:0002439: + text: OBI:0002439 + description: A nuclear ligation assay that detects chromosomal interactions + between any two genomic loci. Chromatin segments are cross-linked, cut by + restriction enzymes, ligated, and finally analyzed by PCR. + meaning: OBI:0002439 + title: chromosome conformation capture assay + OBI:0002440: + text: OBI:0002440 + description: A chromosome conformation capture assay that detects genome-wide + chromosomal interactions. High-throughput techniques are used to sequence + the ligated fragments after cross-linking and cutting with restriction enzymes. + meaning: OBI:0002440 + title: Hi-C assay + OBI:0002441: + text: OBI:0002441 + description: An assay that produces a description of the qualities of an organism + that has not been transformed, through observation and physical, non-invasive + techniques. + meaning: OBI:0002441 + title: physical examination of an organism + OBI:0002442: + text: OBI:0002442 + description: A footprinting assay that uses the reaction of hydroxyl radicals + with side-chain sites in molecules (proteins, DNA, etc)_ with the resultant + mass shift demonstrating the site of modification, used to_ to asses the + accessibility of that site. + meaning: OBI:0002442 + title: hydroxyl-radical footprinting assay + OBI:0002443: + text: OBI:0002443 + description: A footprinting assay that determines protein-binding sites on + DNA by partial cleavage of ligand-protected DNA restriction fragments with + methidium-propyl-EDTA (MPE). MPE-Fe(II) in the presence of oxygen efficiently + catalyzes the non-specific clevage of DNA. + meaning: OBI:0002443 + title: methidiumpropyl-EDTA-iron(II) footprinting assay + OBI:0002445: + text: OBI:0002445 + description: A transcription profiling assay in which the transcription start + site for a gene is determined by identifying the 5' end of mRNA. A radio-labeled + primer is annealed to a complementary mRNA sequence near the 3' end, then + cDNA is synthesized until the 5' end is reached. + meaning: OBI:0002445 + title: transcription start site mapping by primer extension assay + OBI:0002449: + text: OBI:0002449 + description: A footprinting assay that detects the binding of an antigen with + an antibody. + meaning: OBI:0002449 + title: footprinting assay measuring binding of a B cell epitope:antibody complex + OBI:0002450: + text: OBI:0002450 + description: A hydroxyl-radical footprinting assay that detects the binding + of an antigen with an antibody. + meaning: OBI:0002450 + title: hydroxyl-radical footprinting assay measuring binding of a B cell epitope:antibody + complex + OBI:0002451: + text: OBI:0002451 + description: An enzyme-linked immunosorbent assay that detects interferon-alpha + production by T cells. + meaning: OBI:0002451 + title: ELISA measuring epitope specific interferon-alpha production by T cells + OBI:0002452: + text: OBI:0002452 + description: A T cell epitope specific cytokine production assay that detects + interferon-alpha production by T cells. + meaning: OBI:0002452 + title: assay measuring epitope specific interferon-alpha production by T cells + OBI:0002457: + text: OBI:0002457 + description: A transcription profiling by RNA sequencing assay that maps the + genome-wide distribution of transcriptionally-engaged Pol II at base-pair + resolution by using biotin-labeled ribonucleotide triphosphate analogs (biotin-NTP) + for nuclear run-on reactions, allowing the efficient affinity purification + of nascent RNAs for high throughput sequencing from their 3' ends. + meaning: OBI:0002457 + title: precision nuclear run-on sequencing assay + OBI:0002458: + text: OBI:0002458 + description: A nuclear ligation assay which uses cross-linking of proteins + to proteins and DNA, followed by two rounds of digestion and ligation, inverse + PCR, and characterization by microarray or DNA sequencing. This enables + unbiased genome-wide screens for DNA contacts made by single genomic sites + of interest. + meaning: OBI:0002458 + title: chromosome conformation capture-on-chip assay + OBI:0002459: + text: OBI:0002459 + description: A genotyping assay in which carbon-copy chromosome conformation + is used to detect polymorphism in DNA samples. + meaning: OBI:0002459 + title: genotype phasing by Hi-C assay + OBI:0002485: + text: OBI:0002485 + description: A sequencing assay that incorporates single-end reads and sequencing + technology to determine transcripts, gene structures, and gene expressions. + meaning: OBI:0002485 + title: transcript analysis by single-end sequencing assay + OBI:0002489: + text: OBI:0002489 + description: An organism detection assay that uses a differential medium to + achieve its objective. + meaning: OBI:0002489 + title: differential medium assay + OBI:0002564: + text: OBI:0002564 + description: A histological assay that is intended to check for the presence + or level of a specific disease. + meaning: OBI:0002564 + title: histopathology assay + OBI:0002571: + text: OBI:0002571 + description: A transcription profiling by RNA sequencing assay to study transcriptomes + through the enrichment of polyadenylated transcripts or removal of ribosomal + RNA prior to high-throughput sequencing. + meaning: OBI:0002571 + title: polyA-selected RNA sequencing assay + OBI:0002572: + text: OBI:0002572 + description: A transcription profiling by RNA sequencing assay to study non-polyadenylated + transcripts, such as, but not exclusive to unspliced and circular isoforms, + through the depletion of polyadenylated transcripts prior to high-throughput + sequencing. + meaning: OBI:0002572 + title: polyA-depleted RNA sequencing assay + OBI:0002575: + text: OBI:0002575 + description: A transcription profiling by RNA sequencing assay for sequencing + isoforms by enriching a cDNA library for full-length reads spanning entire + transcript isoforms. + meaning: OBI:0002575 + title: isoform sequencing + OBI:0002597: + text: OBI:0002597 + description: A chromosome conformation capture-on-chip assay quantitates the + products with multiplexed high-throughput sequencing. + meaning: OBI:0002597 + title: chromosome conformation capture sequencing assay + OBI:0002621: + text: OBI:0002621 + description: An assay in which a cellular process is replicated from the bottom-up + using isolated components in order to observe how the components work together. + meaning: OBI:0002621 + title: reconstitution assay + OBI:0002622: + text: OBI:0002622 + description: A reconstitution assay in which RNA synthesis is investigated + using RNA polymerase II transcription systems replicated in vitro from their + base components. + meaning: OBI:0002622 + title: in vitro transcription reconstitution assay + OBI:0002623: + text: OBI:0002623 + description: A DNA sequencing assay that intends to provide information on + the DNA sequences of multiple genomes (a metagenome) from different organisms + present in the same input sample. + meaning: OBI:0002623 + title: whole metagenome sequencing assay + OBI:0002628: + text: OBI:0002628 + description: A gene knockdown assay in which RNAi gene knockdown is used to + disrupt gene transcripts. + meaning: OBI:0002628 + title: RNAi knockdown assay + OBI:0002629: + text: OBI:0002629 + description: An assay to study transcription through direct RNA sequence determination, + without prior conversion of RNA molecules to cDNA. + meaning: OBI:0002629 + title: direct RNA sequencing assay + OBI:0002631: + text: OBI:0002631 + description: A transcription profiling by RNA sequencing assay that uses as + input RNA extracts that can be traced to a single cell of origin. These + extracts may come from the entire cell or only a part of the cell such as + the nucleus or the cytoplasm. + meaning: OBI:0002631 + title: single-cell transcription profiling by RNA sequencing assay + OBI:0002634: + text: OBI:0002634 + description: An efficacy of B cell epitope intervention experiment that uses + a disease exacerbation in vivo intervention experiment after adoptive transfer + of epitope specific antibodies or B cells. + meaning: OBI:0002634 + title: in vivo assay measuring B cell epitope specific disease exacerbation + resulting from the adoptive transfer of epitope specific antibodies or B + cells + OBI:0002635: + text: OBI:0002635 + description: An efficacy of T cell epitope intervention experiment that detects + a decrease in disease after adoptive transfer of epitope specfic T cells. + meaning: OBI:0002635 + title: in vivo assay measuring T cell epitope specific disease reduction resulting + from the adoptive transfer of epitope specific T cells + OBI:0002636: + text: OBI:0002636 + description: An efficacy of B cell epitope intervention experiment that detects + a decrease in disease after adoptive transfer of epitope specific antibodies + or B cells. + meaning: OBI:0002636 + title: in vivo assay measuring B cell epitope specific disease reduction resulting + from adoptive transfer of epitope specific antibodies or B cells + OBI:0002637: + text: OBI:0002637 + description: An efficacy of T cell epitope intervention experiment that uses + a epitope protection experiment after adoptive transfer of epitope specfic + T cells. + meaning: OBI:0002637 + title: in vivo assay measuring T cell epitope specific protection from challenge + resulting from the adoptive transfer of epitope specific T cells + OBI:0002638: + text: OBI:0002638 + description: An efficacy of B cell epitope intervention experiment that uses + a epitope protection experiment after adoptive transfer of epitope specific + antibodies or B cells. + meaning: OBI:0002638 + title: in vivo assay measuring B cell epitope specific protection from challenge + resulting from adoptive transfer of epitope specific antibodies or B cells + OBI:0002639: + text: OBI:0002639 + description: An in vivo assay measuring T cell epitope specific protection + from pathogen challenge resulting from the adoptive transfer of epitope + specific antibodies or B cells using pathogen burden. + meaning: OBI:0002639 + title: in vivo assay measuring T cell epitope specific protection from challenge + resulting from the adoptive transfer of epitope specific T cells based on + pathogen burden + OBI:0002640: + text: OBI:0002640 + description: An in vivo assay measuring B cell epitope specific protection + from pathogen challenge resulting from the adoptive transfer of epitope + specific antibodies or B cells using pathogen burden. + meaning: OBI:0002640 + title: in vivo assay measuring B cell epitope specific protection from challenge + resulting from the adoptive transfer of epitope specific antibodies or B + cells based on pathogen burden + OBI:0002641: + text: OBI:0002641 + description: An in vivo assay measuring T cell epitope specific protection + from other challenge resulting from the adoptive transfer of epitope specific + T cells using survival. + meaning: OBI:0002641 + title: in vivo assay measuring T cell epitope specific protection from other + challenge resulting from the adoptive transfer of epitope specific T cells + based on survival + OBI:0002642: + text: OBI:0002642 + description: An in vivo assay measuring B cell epitope specific protection + from other challenge resulting from the adoptive transfer of epitope specific + antibodies or B cells using survival. + meaning: OBI:0002642 + title: in vivo assay measuring B cell epitope specific protection from other + challenge resulting from the adoptive transfer of epitope specific antibodies + or B cells based on survival + OBI:0002643: + text: OBI:0002643 + description: An in vivo assay measuring T cell epitope specific protection + from tumor challenge resulting from the adoptive transfer of epitope specific + T cells using tumor burden. + meaning: OBI:0002643 + title: in vivo assay measuring T cell epitope specific protection from challenge + resulting from the adoptive transfer of epitope specific T cells based on + tumor burden + OBI:0002644: + text: OBI:0002644 + description: An in vivo assay measuring B cell epitope specific protection + from tumor challenge resulting from the adoptive transfer of epitope specific + antibodies or B cells using tumor burden. + meaning: OBI:0002644 + title: in vivo assay measuring B cell epitope specific protection from challenge + resulting from the adoptive transfer of epitope specific antibodies or B + cells based on tumor burden + OBI:0002645: + text: OBI:0002645 + description: An efficacy of T cell epitope intervention experiment that uses + a tolerance induction intervention experiment after adoptive transfer of + epitope specfic T cells. + meaning: OBI:0002645 + title: in vivo assay measuring T cell epitope specific tolerance induction + resulting from the adoptive transfer of epitope specific T cells + OBI:0002646: + text: OBI:0002646 + description: An efficacy of B cell epitope intervention experiment that uses + a tolerance induction intervention experiment after adoptive transfer of + epitope specific antibodies or B cells. + meaning: OBI:0002646 + title: in vivo assay measuring B cell epitope specific tolerance induction + resulting from the adoptive transfer of epitope specific antibodies or B + cells + OBI:0002647: + text: OBI:0002647 + description: An assay that uses a Giemsa stain to characterize cells. + meaning: OBI:0002647 + title: Giemsa stain assay + OBI:0002649: + text: OBI:0002649 + description: An organism detection assay that detects microorganisms in a + blood specimen. + meaning: OBI:0002649 + title: blood microbiology assay + OBI:0002664: + text: OBI:0002664 + description: A cytometric bead array assay that detects interleukin-15 production + by T cells. + meaning: OBI:0002664 + title: cytometric bead array assay measuring epitope specific interleukin-15 + production by T cells + OBI:0002665: + text: OBI:0002665 + description: A cytometric bead array assay that detects interleukin-16 production + by T cells. + meaning: OBI:0002665 + title: cytometric bead array assay measuring epitope specific interleukin-16 + production by T cells + OBI:0002666: + text: OBI:0002666 + description: An efficacy of B cell epitope intervention experiment that detects + a hypersensitivity response by monitoring skin reactions after adoptive + transfer of epitope specific antibodies or B cells. + meaning: OBI:0002666 + title: in vivo assay measuring B cell epitope specific induction of hypersensitivity + resulting from the adoptive transfer of epitope specific antibodies or B + cells + OBI:0002667: + text: OBI:0002667 + description: An efficacy of T cell epitope intervention experiment that detects + epitope specific type IV hypersensitivity after adoptive transfer of epitope + specfic T cells. + meaning: OBI:0002667 + title: in vivo skin test assay measuring T cell epitope specific type IV hypersensitivity + resulting from the adoptive transfer of epitope specific T cells + OBI:0002668: + text: OBI:0002668 + description: A T cell epitope specific proliferation assay that is performed + in vivo after adoptive transfer of epitope specfic T cells. + meaning: OBI:0002668 + title: in vivo assay measuring epitope specific proliferation of T cells resulting + from the adoptive transfer of epitope specific T cells + OBI:0002669: + text: OBI:0002669 + description: A T cell epitope specific helper activity assay that detects + the ability of a T cell epitope to enhance an antibody response after adoptive + transfer of epitope specfic T cells. + meaning: OBI:0002669 + title: assay measuring epitope specific helper T cell enhancement of a B cell + mediated immune response resulting from the adoptive transfer of epitope + specific T cells + OBI:0002670: + text: OBI:0002670 + description: A T cell epitope specific helper activity assay that detects + the ability of a T cell epitope to enhance a T cell response after adoptive + transfer of epitope specfic T cells. + meaning: OBI:0002670 + title: assay measuring epitope specific helper T cell enhancement of a T cell + mediated immune response resulting from the adoptive transfer of epitope + specific T cells + OBI:0002671: + text: OBI:0002671 + description: An in vivo cell killing assay that detects the killing of an + antigen presenting cell (APC) by a T cell whose TCR recognizes an epitope + presented by the APC after adoptive transfer of epitope specific T cells. + meaning: OBI:0002671 + title: in vivo assay measuring epitope specific T cell killing resulting from + the adoptive transfer of epitope specific T cells + OBI:0002672: + text: OBI:0002672 + description: An enzyme-linked immunosorbent assay that detects epitope specific + perforin release by T cells. + meaning: OBI:0002672 + title: ELISA measuring epitope specific perforin release by T cells + OBI:0002675: + text: OBI:0002675 + description: An assay in which multiplexing the construction and interrogation + of larger libraries of reporter constructs allows measurement of the transcriptional + regulatory activities of thousands to hundreds of thousands of DNA sequences. + meaning: OBI:0002675 + title: massively parallel reporter assay + OBI:0002676: + text: OBI:0002676 + description: An efficacy of T cell epitope intervention experiment that is + performed after adoptive transfer of epitope specfic T cells. + meaning: OBI:0002676 + title: in vivo assay measuring a T cell epitope specific response after adoptive + transfer of epitope specific T cells + OBI:0002677: + text: OBI:0002677 + description: An efficacy of B cell epitope intervention experiment that is + performed after adoptive transfer of epitope specific antibodies or B cells. + meaning: OBI:0002677 + title: in vivo assay measuring a B cell epitope specific response after adoptive + transfer of epitope specific antibodies or B cells + OBI:0002678: + text: OBI:0002678 + description: An efficacy of T cell epitope intervention experiment that uses + a disease exacerbation in vivo intervention experiment after adoptive transfer + of epitope specfic T cells. + meaning: OBI:0002678 + title: in vivo assay measuring T cell epitope specific disease exacerbation + resulting from the adoptive transfer of epitope specific T cells + OBI:0002680: + text: OBI:0002680 + description: An assay that measures the entry in target cells of reporter + viral particles that express an envelope protein of a different virus of + interest. + meaning: OBI:0002680 + title: pseudovirus entry assay + OBI:0002692: + text: OBI:0002692 + description: An assay that uses polymerase chain reaction technique to amplify + DNA. + meaning: OBI:0002692 + title: polymerase chain reaction assay + OBI:0002693: + text: OBI:0002693 + description: An assay that uses digestion of DNA with specific restriction + enzymes followed by gel electropheresis to detect differences in the sizes + of the generated fragments that are due to genetic differences (polymorphisms) + in homologous sequences. + meaning: OBI:0002693 + title: restriction fragment length polymorphism assay + OBI:0002694: + text: OBI:0002694 + description: An assay to identify a specific individual organism from a DNA + specimen by looking at unique patterns in their DNA. + meaning: OBI:0002694 + title: DNA fingerprinting assay + OBI:0002695: + text: OBI:0002695 + description: An assay that aims to detect the presence and/or frequency of + resistance to insecticides in an organism or organism population. + meaning: OBI:0002695 + title: insecticide resistance assay + OBI:0002696: + text: OBI:0002696 + description: An insecticide resistance assay that detects, in a population, + presence and frequency of mutant alleles for previously characterized mutations + with insecticide resistance phenotypes. + meaning: OBI:0002696 + title: insecticide resistance by monitoring known mutations assay + OBI:0002697: + text: OBI:0002697 + description: An insecticide resistance assay that is based on determination + the catalytic activity of an enzyme associated with insecticide resistance + phenotypes. + meaning: OBI:0002697 + title: insecticide resistance by detecting enzyme activity assay + OBI:0002698: + text: OBI:0002698 + description: An insecticide resistance assay that is typically conducted to + measure the effects of a substance on a living organism. + meaning: OBI:0002698 + title: insecticide resistance bioassay + OBI:0002699: + text: OBI:0002699 + description: An insecticide resistance by detecting enzyme activity assay + that measures activity of alpha esterase. + meaning: OBI:0002699 + title: insecticide resistance by detecting alpha esterase activity assay + OBI:0002700: + text: OBI:0002700 + description: An insecticide resistance by detecting enzyme activity assay + that measures activity of beta esterase. + meaning: OBI:0002700 + title: insecticide resistance by detecting beta esterase activity assay + OBI:0002701: + text: OBI:0002701 + description: An insecticide resistance by detecting enzyme activity assay + that measures activity of acetylcholinesterase. + meaning: OBI:0002701 + title: insecticide resistance by detecting acetylcholinesterase activity assay + OBI:0002702: + text: OBI:0002702 + description: An insecticide resistance by detecting enzyme activity assay + that measures activity of glutathione S-transferase (GST). + meaning: OBI:0002702 + title: insecticide resistance by detecting glutathione S-transferase activity + assay + OBI:0002703: + text: OBI:0002703 + description: An insecticide resistance by detecting enzyme activity assay + that measures activity of carboxylic ester hydrolase using p-nitrophenyl + acetate as a substrate. + meaning: OBI:0002703 + title: insecticide resistance by detecting carboxylic ester hydrolase activity + assay + OBI:0002704: + text: OBI:0002704 + description: An insecticide resistance by detecting enzyme activity assay + that measures whether mixed-function oxidase activity present. + meaning: OBI:0002704 + title: insecticide resistance by detecting mixed-function oxidase assay + OBI:0002705: + text: OBI:0002705 + description: An insecticide resistance bioassay without the use of any synergist. + meaning: OBI:0002705 + title: direct insecticide resistance bioassay + OBI:0002706: + text: OBI:0002706 + description: An insecticide resistance bioassay by adding insecticide directly + to the thorax of the insect. + meaning: OBI:0002706 + title: topical application insecticide resistance bioassay + OBI:0002707: + text: OBI:0002707 + description: A direct insecticide resistance assay that at preset insecticide + dosage scoring mortality to determine resistance of a population. + meaning: OBI:0002707 + title: direct insecticide resistance diagnostic assay + OBI:0002708: + text: OBI:0002708 + description: A direct insecticide resistance assay in which an insect population + is exposed to a range of insecticide dosage scoring mortality to determine + resistance. + meaning: OBI:0002708 + title: insecticide resistance dose response assay + OBI:0002709: + text: OBI:0002709 + description: A direct insecticide resistance assay to determine resistance + as a consequence of the time of exposure to insecticide. + meaning: OBI:0002709 + title: insecticide resistance time response assay + OBI:0002710: + text: OBI:0002710 + description: A direct insecticide resistance diagnostic assay performs in + a glass bottle coated with insecticides for detecting resistance to insecticides + in vector populations. + meaning: OBI:0002710 + title: Centre for Disease Control and Prevention bottle bioassay + OBI:0002711: + text: OBI:0002711 + description: A direct insecticide resistance diagnostic assay uses WHO cone + kit. + meaning: OBI:0002711 + title: WHO cone kit diagnostic assay + OBI:0002712: + text: OBI:0002712 + description: A direct insecticide resistance diagnostic assay uses WHO paper + kit. + meaning: OBI:0002712 + title: WHO paper kit diagnostic assay + OBI:0002713: + text: OBI:0002713 + description: A direct insecticide resistance diagnostic assay tests survival + of larvae in a medium supplemented with insecticide. + meaning: OBI:0002713 + title: WHO larvicide diagnostic assay + OBI:0002714: + text: OBI:0002714 + description: An insecticide resistance dose response assay that performs in + a glass bottle coated with insecticides. + meaning: OBI:0002714 + title: insecticide resistance dose response by bottle assay + OBI:0002715: + text: OBI:0002715 + description: An insecticide resistance dose response assay that tests survival + of larvae in a medium supplemented with insecticide. + meaning: OBI:0002715 + title: insecticide resistance dose response by survival of larvae assay + OBI:0002716: + text: OBI:0002716 + description: An insecticide resistance dose response assay using WHO paper + kit. + meaning: OBI:0002716 + title: insecticide resistance dose response by WHO paper kit assay + OBI:0002717: + text: OBI:0002717 + description: An insecticide resistance time response assay that is performed + in a glass bottle coated with insecticides, with the presence of a synergist. + meaning: OBI:0002717 + title: insecticide resistance time response by bottle assay + OBI:0002718: + text: OBI:0002718 + description: An insecticide resistance time response assay using WHO paper + kit, with the presence of a synergist. + meaning: OBI:0002718 + title: insecticide resistance time response by WHO paper kit assay + OBI:0002719: + text: OBI:0002719 + description: An insecticide resistance by monitoring known mutations assay + that detects any mutation involving single base changes or small deletions + using amplification refractory mutation system (ARMS). The ARMS is based + on the use of sequence-specific PCR primers that allow amplification of + test DNA only when the target allele is contained within the sample. Following + an ARMS reaction the presence or absence of a PCR product is diagnostic + for the presence or absence of the target allele. It can be used to analyze + human genomic DNA for one or more mutations. + meaning: OBI:0002719 + title: insecticide resistance by amplification refractory mutation system + assay + OBI:0002720: + text: OBI:0002720 + description: An insecticide resistance by monitoring known mutations assay + that detects Single Nucleotide Polymorphisms (SNPs) using PCR technique + and mismatched primers that is close to the mutation of interest and digested + the PCR productions using restriction enzymes. + meaning: OBI:0002720 + title: insecticide resistance by primer introduced restriction analysis PCR + assay + OBI:0002721: + text: OBI:0002721 + description: An insecticide resistance by monitoring known mutations assay + that detects gene mutation based on nested polymerase chain reaction technique. + meaning: OBI:0002721 + title: insecticide resistance by nested polymerase chain reaction assay + OBI:0002722: + text: OBI:0002722 + description: An insecticide resistance assay that is based on monitoring known + mutations using ligase detection reaction exquisitely discriminate between + a mismatched and complementary DNA helix. + meaning: OBI:0002722 + title: insecticide resistance by ligase detection reaction assay + OBI:0002723: + text: OBI:0002723 + description: An insecticide resistance by ligase detection reaction assay + that uses fluorescently labeled conserved probes in ligase detection reaction. + meaning: OBI:0002723 + title: insecticide resistance by ligase detection reaction-fluorescent microsphere + assay + OBI:0002724: + text: OBI:0002724 + description: An insecticide resistance assay that is based on monitoring known + mutations by PCR amplification of specific alleles to detect polymorphic + or mutant alleles. + meaning: OBI:0002724 + title: insecticide resistance by PCR amplification of specific alleles assay + OBI:0002725: + text: OBI:0002725 + description: An insecticide resistance assay that is based on monitoring known + mutations by PCR technique that uses target specific probes labeled with + fluorogenic chromophores to detect gene mutation. + meaning: OBI:0002725 + title: insecticide resistance by fluorogenic PCR assay + OBI:0002726: + text: OBI:0002726 + description: An insecticide resistance by monitoring known mutations assay + based on restriction fragment length polymorphism assay. + meaning: OBI:0002726 + title: insecticide resistance by PCR-RFLP assay + OBI:0002727: + text: OBI:0002727 + description: An insecticide resistance assay that is based on monitoring known + mutations by PCR amplification of short interspersed elements (SINEs). + meaning: OBI:0002727 + title: insecticide resistance by short interspersed elements PCR assay + OBI:0002728: + text: OBI:0002728 + description: An organism detection assay that detects pathogens. + meaning: OBI:0002728 + title: pathogen detection assay + OBI:0002729: + text: OBI:0002729 + description: A pathogen detection assay that identifies the presence or absence + of specific peptide epitopes of circumsporozoite (CS) protein of the most + important Plasmodium falciparum and two strains (variants 210 and 247) of + the more widespread Plasmodium vivax using a dipstick wicking test strip. + meaning: OBI:0002729 + title: VectorTest assay + OBI:0002730: + text: OBI:0002730 + description: A pathogen detection assay that is based on Rapid Analyte Measurement + Platform (RAMP) technology to quantify immunologically active substances. + meaning: OBI:0002730 + title: pathogen detection by Rapid Analyte Measurement Platform assay + OBI:0002731: + text: OBI:0002731 + description: A pathogen detection assay that is based on loop-mediated isothermal + amplification. + meaning: OBI:0002731 + title: pathogen detection by loop-mediated isothermal amplification assay + OBI:0002732: + text: OBI:0002732 + description: An assay that analyzes the specimen taken from blood meal fed + organism, such as insect. + meaning: OBI:0002732 + title: blood meal assay + OBI:0002733: + text: OBI:0002733 + description: A blood meal assay that uses a counter current immunoelectrophoresis + technique. + meaning: OBI:0002733 + title: blood meal by counter current immunoelectrophoresis assay + OBI:0002734: + text: OBI:0002734 + description: A DNA fingerprinting assay that uses DNA extracted from blood + meal fed organism, such as insect. + meaning: OBI:0002734 + title: DNA based blood meal finger printing assay + OBI:0002735: + text: OBI:0002735 + description: An organism detection assay that is based on the size of organism. + meaning: OBI:0002735 + title: organism detection by size assay + OBI:0002736: + text: OBI:0002736 + description: An organism detection assay that is based on genetic crossings + between specimens collected in the field to determine whether fertile progeny + is produced. + meaning: OBI:0002736 + title: organism detection by cross mating assay + OBI:0002737: + text: OBI:0002737 + description: An organism detection assay that is based on analysis of polytene + chromosomes through cytological examination of the banding pattern of the + species. + meaning: OBI:0002737 + title: organism detection by cytological chromosome examination assay + OBI:0002738: + text: OBI:0002738 + description: An organism detection assay that is based on electrophoresis + to determine the isozymes that are present in a specific population to determine + the species. + meaning: OBI:0002738 + title: organism detection by isoenzyme electrophoresis assay + OBI:0002739: + text: OBI:0002739 + description: An organism detection assay that is based on examination of morphology + and the use of specific taxonomic keys to determine the species of the specimen. + meaning: OBI:0002739 + title: organism detection by morphological examination assay + OBI:0002740: + text: OBI:0002740 + description: An organism detection assay that is based on PCR. + meaning: OBI:0002740 + title: organism detection by PCR assay + OBI:0002741: + text: OBI:0002741 + description: An organism detection assay that is based on DNA hybrdization. + meaning: OBI:0002741 + title: organism detection by specific DNA hybridization assay + OBI:0002742: + text: OBI:0002742 + description: An organism detection assay of mosquito species that is on the + basis of mosquito survival depending on the salt concentration in the water + used to lay their eggs to differentiate between morphologically very similar + species. + meaning: OBI:0002742 + title: organism detection by salinity tolerance assay + OBI:0002753: + text: OBI:0002753 + description: Precision nuclear run-on and sequencing to detect Pol II initiation + sites + meaning: OBI:0002753 + title: PRO-cap + OBI:0002759: + text: OBI:0002759 + description: A transcription profiling by RNA sequencing assay in which highly + abundant ribosomal RNAs are removed from total RNA before sequencing, resulting + in more efficient transcript/gene detection. + meaning: OBI:0002759 + title: ribosomal RNA-depleted RNA sequencing assay + OBI:0002760: + text: OBI:0002760 + description: A transcription profiling by RNA sequencing assay that determines + the RNA sequence of microbial transcripts from a microbioal community of + mixed species from a given microbiome. + meaning: OBI:0002760 + title: metatranscriptome profiling assay + OBI:0002761: + text: OBI:0002761 + description: An analyte assay assay that detects and identifies lipids resulting + from biochemical and cellular metabolism. + meaning: OBI:0002761 + title: lipid profiling assay + OBI:0002762: + text: OBI:0002762 + description: An ATAC-seq assay in which single nuclei are isolated from frozen + tissue samples, through a protocol designed to maximally preserve nucleus + integrity during sample processing and optimize transposase-mediated fragmentation + of chromatin in individual nuclei. + meaning: OBI:0002762 + title: single-nucleus ATAC-seq + OBI:0002763: + text: OBI:0002763 + description: An amplicon sequencing assay in which the amplicon is derived + from universal primers used to amplify the 16S ribosomal RNA gene from isolate + bacterial genomic DNA or metagenomic DNA from a microbioal community. Resulting + sequences are compared to reference 16S sequence databases to identify or + classify bacteria present within a given sample. + meaning: OBI:0002763 + title: 16s ribosomal gene sequencing assay + OBI:0002764: + text: OBI:0002764 + description: An ATAC assay designed to robustly map the accessible genome + of individual cells, using sequencing integrated into a programmable microfluidics + platform, in order to provide insights into cell-to-cell variation in accessibility + profiles. + meaning: OBI:0002764 + title: single-cell ATAC-seq + OBI:0002765: + text: OBI:0002765 + description: A protein expression profiling assay of microbial proteins extracted + from a microbioal community of mixed species from a given microbiome. + meaning: OBI:0002765 + title: microbiome protein expression profiling assay + OBI:0002766: + text: OBI:0002766 + description: An analyte assay to study presence, concentration, or amount + of cytokines. + meaning: OBI:0002766 + title: cytokine assay + OBI:0002767: + text: OBI:0002767 + description: A sequencing assay in which a DNA or RNA input molecule is amplified + by PCR and the product sequenced. + meaning: OBI:0002767 + title: amplicon sequencing assay + OBI:0002768: + text: OBI:0002768 + description: A whole metagenome sequencing assay that intends to provide information + on multiple genome sequences from different viruses present in the same + input sample. + meaning: OBI:0002768 + title: whole virome sequencing assay + OBI:0002773: + text: OBI:0002773 + description: An assay that detects the linking of antigens and antibodies + via special signaling mechanisms, such as EIA, ELISA, chemiluminescence, + etc. that produces one measure (quantitative or qualitative) of the analyte + of interest + meaning: OBI:0002773 + title: single-value binding of antibody with reporter to antigen assay + OBI:0002946: + text: OBI:0002946 + description: A type of cytometry assay in which fluorescent dyes are used + to label and detect proteins or structures associated with molecular processes + of apoptosis. + meaning: OBI:0002946 + title: fluorescence imaging-based apoptosis assay + OBI:0002947: + text: OBI:0002947 + description: A type of cell proliferation assay in which fluorescent dyes + are ued to label and detect proteins or structures that can be used to count + cells. + meaning: OBI:0002947 + title: fluorescence imaging-based cell proliferation assay + OBI:0002948: + text: OBI:0002948 + description: A type of cytometry assay in which fluorescent dyes are used + to label and detect proteins or structures associated with particular cell + cycle states. + meaning: OBI:0002948 + title: fluorescence imaging-based cell cycle state assay + OBI:0002949: + text: OBI:0002949 + description: A type of cytometry assay in which fluorescent dyes are used + to label and detect proteins or structures associated with cell viability. + meaning: OBI:0002949 + title: fluorescence imaging-based cell viability assay + OBI:0002950: + text: OBI:0002950 + description: A type of cytometry assay in which fluorescent dyes are used + to label and detect proteins or structures to determine if drugs applied + to cells in combination have a greater effect together than the sum of their + separate effects. + meaning: OBI:0002950 + title: fluorescence imaging-based drug synergy assay + OBI:0002951: + text: OBI:0002951 + description: A type of cytometry assay in which fluorescent dyes are used + to label and detect proteins or structures in order to determine cell morphology. + meaning: OBI:0002951 + title: fluorescence imaging-based cell morphology assay + OBI:0002952: + text: OBI:0002952 + description: A type of cytometry assay in which fluorescent dyes are used + to stain seven major cellular components followed by automatic image capture + and analysis which extracts shape, texture, and intensity parameters. + meaning: OBI:0002952 + title: fluorescence imaging multiplex cytological profiling + OBI:0002953: + text: OBI:0002953 + description: A type of assay that measures the quantity and/or identity of + proteins in their modficied and unmodified states where modifications include + phosphorylation, methylation, acetylation, etc. + meaning: OBI:0002953 + title: protein state assay + OBI:0002954: + text: OBI:0002954 + description: A type of protein state assay that employs high-throughput microscopy + to measure levels of proteins in different phosphorylation states. + meaning: OBI:0002954 + title: fluorescence imaging-based protein phosphorylation state assay + OBI:0002955: + text: OBI:0002955 + description: A type of protein state assay that employs mass spectrometry + to measure levels of proteins in different phosphorylation states. + meaning: OBI:0002955 + title: mass spectrometry-based protein state assay + OBI:0002956: + text: OBI:0002956 + description: A type of mass spectrometry protein state assay that measures + levels of a targeted set of proteins in different phosphorylation states + in response to drug perturbations. + meaning: OBI:0002956 + title: targeted, drug-modulated, mass spectrometry-based protein phoshporylation-state + assay + OBI:0002957: + text: OBI:0002957 + description: A type of protein state assay where tissue or cell samples are + lysed and then spotted onto a slide which is probed with antibodies specific + to proteins with and without post-translational modifications. + meaning: OBI:0002957 + title: reverse phase protein array profiling assay + OBI:0002958: + text: OBI:0002958 + description: A type of mass spectrometry assay using a data-independent acquisition + method to identify target peptides. + meaning: OBI:0002958 + title: SWATH-MS protein profiling assay + OBI:0002959: + text: OBI:0002959 + description: A type of tandem mass spectrometry where isotopomer labels are + employed for accurate quantification and identification of specific proteins. + meaning: OBI:0002959 + title: tandem mass tag mass spectrometry assay + OBI:0002960: + text: OBI:0002960 + description: A type of reporter gene assay that employs fluorescence imaging + to detect a reporter gene's expression. + meaning: OBI:0002960 + title: fluorescence imaging-based reporter gene assay + OBI:0002961: + text: OBI:0002961 + description: A type of epigenetic modification assay that employs targeted + quantitative mass spectrometry to profile modifications of the core histones + of chromatin. + meaning: OBI:0002961 + title: global chromatin profiling by mass spectrometry assay + OBI:0002962: + text: OBI:0002962 + description: A type of assay that identifies compounds that inhibit the activity + of kinases. + meaning: OBI:0002962 + title: kinase inhibitor assay + OBI:0002963: + text: OBI:0002963 + description: A type of proprietary kinase inhibitor assay that and employs + a panel of kinases against which one can test compounds for their selectivity + and potency in interactions with kinases, without the need to add ATP to + the reactions. + meaning: OBI:0002963 + title: KINOMEscan assay + OBI:0002964: + text: OBI:0002964 + description: A type of proprietary in situ kinase inhibitor assay that employs + biotinylated acyl phosphates of ATP and ADP. + meaning: OBI:0002964 + title: KiNativ assay + OBI:0002965: + text: OBI:0002965 + description: A type of transcription profiling assay in which a set of landmark + transcripts that have been determined to provide a comprehensive profile + of cell activity, plus numerous steady-state controls, are assayed via ligation-mediated + amplification followed by capture on fluorescently labeled microspheres + followed by detection of fluorescence. + meaning: OBI:0002965 + title: landmark transcript profiling assay + OBI:0002966: + text: OBI:0002966 + description: A type of cytometry assay where cells are incubated for three + days with a standardized set of extracellular matrix proteins in combination + with various ligands creating varying microenvironment perterbations for + the cells. Immunofluorescent imaging of cells is used to measure features + such as morphology, metabolism, cell cycle, and nuclear activity. + meaning: OBI:0002966 + title: microenvironment microarray assay + OBI:0002967: + text: OBI:0002967 + description: A western blot assay that provides a high-throughput, sensitive, + and quantitative measurement of proteins from numerous samples via an array + of small western blots on a single sheet of nitrocellulose. + meaning: OBI:0002967 + title: microwestern meso-scale quantitative western blot assay + OBI:0002968: + text: OBI:0002968 + description: A type of metabolic profiling assay which employs a hybrid dual + quadrupole linear ion trap mass spectrometer for steady-state profiling + of endogenous polar metabolites from organic extractions from biological + samples. + meaning: OBI:0002968 + title: positive/negative ion switching metabolite profiling assay + OBI:0002969: + text: OBI:0002969 + description: A type of microscopy assay resulting in highly multiplexed immunofluorescence + imaging through sequential rounds of imaging followed by fluorophore inactivation. + meaning: OBI:0002969 + title: cyclic immunofluoroescence assay + OBI:0002970: + text: OBI:0002970 + description: A type of protein state assay in which antibodies attached to + different colored beads and fluorescent reporter dye labels are used in + a multiplexed mixture to assay for proteins in specific states. + meaning: OBI:0002970 + title: multiplex bead-based protein state immunoassay + OBI:0002984: + text: OBI:0002984 + description: A Hi-C assay in which a selection step is performed on ligated + fragments in order to enrich for ligation products containing specific regions + of interest. + meaning: OBI:0002984 + title: capture Hi-C assay + OBI:0002985: + text: OBI:0002985 + description: An imaging assay in which nuclear magnetic resonance is used + to produce information about the interior structure and composition of an + input material entity. + meaning: OBI:0002985 + title: magnetic resonance imaging assay + OBI:0002986: + text: OBI:0002986 + description: An imaging assay that uses a series of X-ray images to produce + information about the interior structure and composition of an input material + entity. + meaning: OBI:0002986 + title: computed tomography imaging assay + OBI:0002987: + text: OBI:0002987 + description: An imaging assay in which positron-emitting radionuclides are + used to visualize functional processes of an input material entity. + meaning: OBI:0002987 + title: positron emission tomography imaging assay + OBI:0002990: + text: OBI:0002990 + description: A sequencing assay that determines the sequences of DNA or RNA + molecules that encode the repertoire of T cell receptors within an input + sample. + meaning: OBI:0002990 + title: T cell receptor repertoire sequencing assay + OBI:0002991: + text: OBI:0002991 + description: A sequencing assay that determines the sequence of a DNA or RNA + molecules that encode the repertoire of B cell receptors within an input + sample. + meaning: OBI:0002991 + title: B cell receptor repertoire sequencing assay + OBI:0003009: + text: OBI:0003009 + description: An assay that measures ferritin + meaning: OBI:0003009 + title: ferritin assay + OBI:0003010: + text: OBI:0003010 + description: An assay that measures fibrinogen + meaning: OBI:0003010 + title: fibrinogen assay + OBI:0003011: + text: OBI:0003011 + description: An analyte assay that measures the abundance of iron + meaning: OBI:0003011 + title: iron assay + OBI:0003012: + text: OBI:0003012 + description: An analyte assay that measures the abundance of ionized calcium + meaning: OBI:0003012 + title: ionized calcium assay + OBI:0003013: + text: OBI:0003013 + description: An analyte assay that measures the abundance of transferrin + meaning: OBI:0003013 + title: transferrin assay + OBI:0003014: + text: OBI:0003014 + description: An analyte assay that measures the abundance of uric acid + meaning: OBI:0003014 + title: uric acid assay + OBI:0003015: + text: OBI:0003015 + description: An analyte assay that measures the abundance of globulin + meaning: OBI:0003015 + title: globulin assay + OBI:0003016: + text: OBI:0003016 + description: A cytometry assay that measures the abundance and/or characteristics + of myelocytes + meaning: OBI:0003016 + title: myelocyte assay + OBI:0003017: + text: OBI:0003017 + description: A cytometry assay that measures the abundance and/or characteristics + of metamyelocytes + meaning: OBI:0003017 + title: metamyelocyte assay + OBI:0003018: + text: OBI:0003018 + description: A cytometry assay that measures the proportion of red blood cells + meaning: OBI:0003018 + title: hematocrit assay + OBI:0003019: + text: OBI:0003019 + description: A cytometry assay that measures the abundance and/or characteristics + of promyelocytes + meaning: OBI:0003019 + title: promyelocyte assay + OBI:0003021: + text: OBI:0003021 + description: A cytometry assay that measures the abundance and/or characteristics + of basophils + meaning: OBI:0003021 + title: basophil assay + OBI:0003022: + text: OBI:0003022 + description: A cytometry assay that measures the abundance and/or characteristics + of neutrophils + meaning: OBI:0003022 + title: neutrophil assay + OBI:0003023: + text: OBI:0003023 + description: A cytometry assay that measures the abundance and/or characteristics + of eosinophils + meaning: OBI:0003023 + title: eosinophil assay + OBI:0003024: + text: OBI:0003024 + description: A cytometry assay that measures the abundance and/or characteristics + of lymphocytes + meaning: OBI:0003024 + title: lymphocyte assay + OBI:0003025: + text: OBI:0003025 + description: A cytometry assay that measures the abundance and/or characteristics + of monocytes + meaning: OBI:0003025 + title: monocyte assay + OBI:0003026: + text: OBI:0003026 + description: A cytometry assay that measures the abundance and/or characteristics + of reticulocytes + meaning: OBI:0003026 + title: reticulocyte assay + OBI:0003027: + text: OBI:0003027 + description: A cytometry assay that measures the abundance and/or characteristics + of macrophages + meaning: OBI:0003027 + title: macrophage assay + OBI:0003028: + text: OBI:0003028 + description: A cytometry assay that measures the abundance and/or characteristics + of platelets + meaning: OBI:0003028 + title: platelet assay + OBI:0003031: + text: OBI:0003031 + description: A polymerase chain reaction assay that uses target specific probes + labeled with fluorogenic chromophores. + meaning: OBI:0003031 + title: fluorogenic PCR assay + OBI:0003032: + text: OBI:0003032 + description: A genotyping assay that uses polymerase chain reaction. + meaning: OBI:0003032 + title: genotyping by PCR assay + OBI:0003033: + text: OBI:0003033 + description: A type of DNA sequencing assay employing in situ chromatin profiling + in which antibody-targeted controlled cleavage by micrococcal nuclease releases + specific protein-DNA complexes into the the supernatant for sequencing. + meaning: OBI:0003033 + title: cleavage under targets and release using nuclease assay + OBI:0003034: + text: OBI:0003034 + description: A type of DNA sequencing assay employing in situ chromatin profiling + in which a chromatin protein is bound in situ by a specific antibody, which + then tethers to a protein A-Tn5 hyperactive transposase fusion protein (pA-Tn5) + loaded with sequence adapters. Activation of pA-Tn5 results in factor-targeted + tagmentation, generating fragments ready for PCR enrichment and DNA sequencing. + meaning: OBI:0003034 + title: cleavage under targets and tagmentation + OBI:0003035: + text: OBI:0003035 + description: A physical examination of an organism that has the objective + to determine the severity of coma in a patient. + meaning: OBI:0003035 + title: coma severity assay + OBI:0003036: + text: OBI:0003036 + description: An assay that detects Plasmodium gametocytes in a specimen. + meaning: OBI:0003036 + title: Plasmodium gametocyte detection assay + OBI:0003037: + text: OBI:0003037 + description: An assay that is quick and easy in the diagnosis of malaria by + detecting evidence of malaria parasites (antigens) in human blood. + meaning: OBI:0003037 + title: malaria rapid diagnosis assay + OBI:0003038: + text: OBI:0003038 + description: An assay that detects parasite in a specimen. + meaning: OBI:0003038 + title: parasite detection assay + OBI:0003039: + text: OBI:0003039 + description: An organism detection assay that detects microorganisms in a + feces specimen. + meaning: OBI:0003039 + title: feces microbiology assay + OBI:0003040: + text: OBI:0003040 + description: An assay that has a blood specimen as evaulant. + meaning: OBI:0003040 + title: blood assay + OBI:0003041: + text: OBI:0003041 + description: A parasite detection assay that can quickly establish the diagnosis + of P. falciparum or P. vivax malaria infection by detecting the antigens + in a person's blood. + meaning: OBI:0003041 + title: falcivax rapid diagnostic test + OBI:0003042: + text: OBI:0003042 + description: A parasite detection assay that is rapid, sensitive, and able + to differentiate between P. falciparum and other malaria parasites. + meaning: OBI:0003042 + title: optimal-IT rapid diagnostic test + OBI:0003043: + text: OBI:0003043 + description: An assay that has a urine specimen as evaluant. + meaning: OBI:0003043 + title: urine assay + OBI:0003044: + text: OBI:0003044 + description: A parasite detection by PCR assay that identifies the species + of parasite. + meaning: OBI:0003044 + title: parasite species identification by PCR assay + OBI:0003045: + text: OBI:0003045 + description: A parasite detection assay that uses PCR. + meaning: OBI:0003045 + title: parasite detection by PCR assay + OBI:0003080: + text: OBI:0003080 + description: An assay that detects body temperature of an organism. + meaning: OBI:0003080 + title: organismal body temperature measurement assay + OBI:0003087: + text: OBI:0003087 + description: A fluorescence detection assay in which the light that is naturally + emitted by a sample is visualized after excitation of the sample with light + at a suitable wavelength. + meaning: OBI:0003087 + title: autofluorescence assay + OBI:0003088: + text: OBI:0003088 + description: An autofluorescence assay in which the light that is naturally + emitted by a sample is visualized via microscopy after excitation of the + sample with light at a suitable wavelength. + meaning: OBI:0003088 + title: autofluorescence microscopy assay + OBI:0003089: + text: OBI:0003089 + description: An assay for transposase-accessible chromatin using sequencing + in which the sample that is sequenced is derived from a collection of cells, + such as a tissue sample or entire cell culture, and therefore provides results + representative of the aggregate of sample cells. + meaning: OBI:0003089 + title: bulk assay for transposase-accessible chromatin using sequencing + OBI:0003090: + text: OBI:0003090 + description: A transcription profiling by RNA sequencing assay in which the + sample that is sequenced is derived from a collection of cells, such as + a tissue sample or entire cell culture, and therefore provides results representative + of the aggregate of sample cells. + meaning: OBI:0003090 + title: bulk RNA-seq assay + OBI:0003091: + text: OBI:0003091 + description: An imaging assay in which multiple cycles consisting of fluorescent + labeling, imaging, and fluorophor deactivation are used to detect multiple + proteins and their locations in a given sample of tissues or cells. + meaning: OBI:0003091 + title: multiplexed fluorescent antibody imaging assay + OBI:0003092: + text: OBI:0003092 + description: A multiplexed fluorescent antibody imaging assay that involves + an iterative staining, imaging and dye inactivation workflow for over 60 + biomarkers on a single fixed tissue section. + meaning: OBI:0003092 + title: Cell DIVE multiplexed imaging assay + OBI:0003093: + text: OBI:0003093 + description: A multiplexed fluorescent antibody imaging assay that involves + a highly multiplexed analysis of up to 40 proteins in a tissue using cyclic + detection of DNA-indexed antibody panels. + meaning: OBI:0003093 + title: co-detection by indexing assay + OBI:0003094: + text: OBI:0003094 + description: An in-situ hybridization assay in which fluorescently labeled + molecules are used to localize specific DNA or RNA sequences. + meaning: OBI:0003094 + title: fluorescence in-situ hybridization assay + OBI:0003095: + text: OBI:0003095 + description: A fluorescence in-situ hybridization assay which involves multiplex + in situ digital quantification of targeted RNA transcripts in fresh or frozen + tissue providing an understanding of the spatial organization of different + cell types. + meaning: OBI:0003095 + title: decoding amplified targeted transcripts with fluorescence in situ hybridization + assay + OBI:0003096: + text: OBI:0003096 + description: A cytometry time of flight assay in which molecules of interest + on or in cells are imaged through a system in which samples are labeled + with multiple different rare-earth tagged antibodies. The sample is then + ablated with a laser and the labeled material is detected by cytometry time + of flight mass spectrometry. + meaning: OBI:0003096 + title: imaging mass cytometry assay + OBI:0003097: + text: OBI:0003097 + description: A mass spectrometry assay where a sample mixture is first separated + by liquid chromatography before being converted into ions which are characterized + by using mass spectrometry based on their mass-to-charge ratio and relative + abundance. + meaning: OBI:0003097 + title: liquid chromatography mass spectrometry assay + OBI:0003098: + text: OBI:0003098 + description: A fluorescence microscopy that involves capturing of photons + emitted by fluorophores excited with a thin sheet of laser light in a sample + only in a relatively narrow plane by a detection objective oriented perpendicularly + to the light sheet and imaged onto a detection device such as a CCD camera. + meaning: OBI:0003098 + title: lightsheet fluorescence microscopy assay + OBI:0003099: + text: OBI:0003099 + description: A mass spectrometry assay that involves collection of spatially + resolved mass spectra of a sample during microscopy where a pulse laser + is used to produce both ionisation and vaporization. The sample is held + in a matrix (such as dihydrobenzoic acid) to protect it from direct laser + illumination and to separate the sample molecules. The spectra are used + to visualise the spatial distribution of biomolecules by their molecular + masses. + meaning: OBI:0003099 + title: matrix assisted laser desorption ionization imaging mass spectrometry + assay + OBI:0003100: + text: OBI:0003100 + description: A cytometry time of flight assay in which molecules of interest + on or in cells are imaged through a system in which samples are labeled + with multiple different rare-earth tagged antibodies. A primary ion beam + is ued to rasterize sections under vacuum, releasing showers of secondary + ions detected by cytometry time of flight mass spectrometry. + meaning: OBI:0003100 + title: multiplexed ion beam imaging assay + OBI:0003101: + text: OBI:0003101 + description: A mass spectrometry assay that analyzes organic and biological + molecules on a substrate by desorption of an analyte into a solvent bridge + formed between two capillaries and the analysis surface. One capillary supplies + solvent to create and maintain the bridge, while the second capillary transports + the dissolved analyte from the bridge to the mass spectrometer. A high voltage + applied between the inlet of mass spectrometer and the primary capillary + creates a self-aspirating nanospray. + meaning: OBI:0003101 + title: nanospray desorption electrospray ionization assay + OBI:0003102: + text: OBI:0003102 + description: A protein expression profiling assay in which proteomics sample + processing is performed in nanoliter volumes. Flow cytometry or laser microdissection + is employed to isolate a small population or single cells into a nanoPOTS + chip. Then, liquid chromatography mass spectrometry is used to measure the + global protein expression. + meaning: OBI:0003102 + title: nanodroplet processing in one pot for trace samples assay + OBI:0003103: + text: OBI:0003103 + description: A histological assay which is used on tissue samples to demonstrate + the presence of carbohydrates and carbohydrate compounds such as polysaccharides, + mucin, glycogen, or fungal cell wall components. + meaning: OBI:0003103 + title: periodic acid-Schiff staining assay + OBI:0003104: + text: OBI:0003104 + description: An assay for transposase-accessible chromatin that uses sequencing + which involves single cell combinatorial indexing ('sci-') strategy where + nucleic acids from each of many cells are uniquely tagged through several + rounds of split-pool barcoding which enables identification of single cells + without single cell isolation. + meaning: OBI:0003104 + title: single cell combinatorial indexing assay for transposase-accessessable + chromatin using sequencing + OBI:0003105: + text: OBI:0003105 + description: A single-cell transcription profiling by RNA sequencing assay + that involves single cell combinatorial indexing ('sci-') strategy to profile + the transcriptomes of single cells or nuclei without single cell isolation. + meaning: OBI:0003105 + title: single-cell combinatorial indexing RNA sequencing assay + OBI:0003106: + text: OBI:0003106 + description: A fluorescence in-situ hybridization assay that involves ultra-resolution + imaging of cell activity by targetting thousands of single molecules with + fluorescent probes which find and hybridize with complementary DNA or RNA + sequences in the tissue sample, thus enabling identification of those molecules + directly in single cells with their spatial context preserved. + meaning: OBI:0003106 + title: sequential fluorescence in-situ hybridization assay + OBI:0003107: + text: OBI:0003107 + description: A transcription profiling by RNA sequencing assay that involves + transfer of RNA from tissue sections onto a surface covered in DNA-barcoded + beads with known positions, allowing the locations of the RNA to be inferred + by sequencing. + meaning: OBI:0003107 + title: slide-seq assay + OBI:0003108: + text: OBI:0003108 + description: An assay that involves joint profiling of accessible chromatin + and RNA within the same cells which enables direct matching of transcriptional + regulation to its outputs. + meaning: OBI:0003108 + title: single-nucleus chromatin accessibility and mRNA expression sequencing + assay + OBI:0003110: + text: OBI:0003110 + description: A mass spectrometry assay combining mass spectrometry and gas + chromatography for the qualitative as well as quantitative determination + of compounds. + meaning: OBI:0003110 + title: gas chromatography mass spectrometry assay + OBI:0003111: + text: OBI:0003111 + description: An analyte assay that uses aptamers to detect protein analytes + in serum. + meaning: OBI:0003111 + title: SOMAscan assay + OBI:0003112: + text: OBI:0003112 + description: A proximity extension assay that uses quantitative polymerase + chain reaction (qPCR) technology to determine the concentration/presence + of proteins using a high-multiplex, high-throughput protein biomarker platform. + The assay utilizes two distinct oligonucleotide-labeled antibodies (‘probes’) + that bind at different sites for each detected protein. When the two probes + are in close proximity, a new PCR target sequence is formed by a proximity-dependent + DNA polymerization event. The resulting sequence is subsequently detected + and quantified using standard real-time PCR. + meaning: OBI:0003112 + title: Olink assay + OBI:0003113: + text: OBI:0003113 + description: An analyte assay that uses quantitative polymerase chain reaction + (qPCR) technology to determine the concentration/presence of an analyte + or analyte complex. + meaning: OBI:0003113 + title: proximity extension assay + OBI:0003115: + text: OBI:0003115 + description: A cytometric bead array assay in which a series of beads are + coated with antibodies specific to antigens of interest. Antigens of interest + attach to antibodies on the beads. Fluorescent labeled secondary antibodies + are used to detect the antigens of interest. + meaning: OBI:0003115 + title: antigen detection by cytometric bead array assay + OBI:0003116: + text: OBI:0003116 + description: A cytometric bead array assay that detects antigen-specific antibodies. + In the assay a series of beads are coated with antigens which capture antibodies + specific to the antigens. Fluorescent labeled secondary antibodies are used + to detect the antibodies of interest. + meaning: OBI:0003116 + title: antibody detection by cytometric bead array assay + OBI:0003117: + text: OBI:0003117 + description: An assay that determines the 3-dimensional configuration of a + molecular entity or molecular complex. + meaning: OBI:0003117 + title: 3D molecular structure determination assay + OBI:0003118: + text: OBI:0003118 + description: A 3D molecular structure determination assay that uses electron + microscopy imaging. + meaning: OBI:0003118 + title: electron-microscopy 3D molecular structure determination assay + OBI:0003122: + text: OBI:0003122 + description: A 3D structure determination assay that determines the 3-dimensional + configuration of a cell. + meaning: OBI:0003122 + title: 3D cell structure determination assay + OBI:0003123: + text: OBI:0003123 + description: A 3D cell structure determination assay that determines the 3-dimensional + configuration of a neural cell. + meaning: OBI:0003123 + title: 3D neural cell structure determination assay + OBI:0003124: + text: OBI:0003124 + description: A 3D neural cell structure determination assay that determines + the 3-dimensional configuration of a neuron. + meaning: OBI:0003124 + title: neuron morphology assay + OBI:0003125: + text: OBI:0003125 + description: A 3D neural cell structure determination assay where sparse and + stochastic methods are used to label genetically-defined neurons. + meaning: OBI:0003125 + title: mosaicism with repeat frameshift genetic sparse labeling + OBI:0003126: + text: OBI:0003126 + description: A neuron morphology assay where the morphology or structure of + a neuron is represented. Often, this assay is a combination of different + assays (sparse labelling, fluorescent labeling, fMOST). + meaning: OBI:0003126 + title: neuron morphology reconstruction assay + OBI:0003127: + text: OBI:0003127 + description: An immune epitope assay that characterizes the structrue of an + antibody-epitope complex, or measures the binding of an antibody receptor + to epitope, or the immune response process resulting from such a binding + event or the recognition of the epitope. + meaning: OBI:0003127 + title: B cell epitope assay + OBI:0003128: + text: OBI:0003128 + description: An immune epitope assay that characterizes the structrue of an + epitope-T cell receptor complex, or measures the binding of a T cell receptor + to epitope, or the immune response process resulting from such a binding + event or the recognition of the epitope. + meaning: OBI:0003128 + title: T cell epitope assay + OBI:0003145: + text: OBI:0003145 + description: An assay that detects the binding of a MHC molecule with a ligand, + and produces a quantitative measurement of the binding as an output. + meaning: OBI:0003145 + title: assay measuring quantitative binding of a MHC:ligand complex + OBI:0003146: + text: OBI:0003146 + description: An assay that detects the binding of an antigen with an antibody, + and produces a quantitative measurement of the binding as an output. + meaning: OBI:0003146 + title: assay measuring quantitative binding of an antigen:antibody complex + OBI:0003147: + text: OBI:0003147 + description: An assay that detects the binding of a MHC:epitope complex with + a T cell receptor, and produces a quantitative measurement of the binding + as an output. + meaning: OBI:0003147 + title: assay measuring quantitative binding of an epitope:MHC:TCR complex + OBI:0003148: + text: OBI:0003148 + description: An albumin assay that measures the concentration of albumin in + a specimen. + meaning: OBI:0003148 + title: albumin concentration assay + OBI:0003149: + text: OBI:0003149 + description: A basophil assay that measures the percentage of basophils in + a specimen. + meaning: OBI:0003149 + title: basophil percentage assay + OBI:0003150: + text: OBI:0003150 + description: A calcium cation assay that measures the concentration of calcium + cations in a specimen. + meaning: OBI:0003150 + title: calcium cation concentration assay + OBI:0003151: + text: OBI:0003151 + description: A chloride assay that measures the concentration of chloride + in a specimen. + meaning: OBI:0003151 + title: chloride concentration assay + OBI:0003152: + text: OBI:0003152 + description: A cholesterol assay that measures the concentration of cholesterol + in a specimen. + meaning: OBI:0003152 + title: cholesterol concentration assay + OBI:0003153: + text: OBI:0003153 + description: A creatinine assay that measures the concentration of creatinine + in a specimen. + meaning: OBI:0003153 + title: creatinine concentration assay + OBI:0003154: + text: OBI:0003154 + description: An eosinophil assay that measures the percentage of eosinophils + in a specimen. + meaning: OBI:0003154 + title: eosinophil percentage assay + OBI:0003155: + text: OBI:0003155 + description: A globulin assay that measures the concentration of globulin + in a specimen. + meaning: OBI:0003155 + title: globulin concentration assay + OBI:0003156: + text: OBI:0003156 + description: A hemoglobin assay that measures the amount of hemoglobin in + a specimen. + meaning: OBI:0003156 + title: hemoglobin concentration assay + OBI:0003157: + text: OBI:0003157 + description: A high-density lipoprotein cholesterol assay that measures the + concentration of high-density lipoprotein cholesterol in a specimen. + meaning: OBI:0003157 + title: high-density lipoprotein cholesterol concentration assay + OBI:0003158: + text: OBI:0003158 + description: An iron assay that measures the concentration of iron cation + in a specimen. + meaning: OBI:0003158 + title: iron concentration assay + OBI:0003159: + text: OBI:0003159 + description: A low-density lipoprotein cholesterol assay that measures the + concentration of low-density lipoprotein cholesterol in a specimen. + meaning: OBI:0003159 + title: low-density lipoprotein cholesterol concentration assay + OBI:0003160: + text: OBI:0003160 + description: A lymphocyte assay that measures the percentage of lymphocytes + in a specimen. + meaning: OBI:0003160 + title: lymphocyte percentage assay + OBI:0003161: + text: OBI:0003161 + description: A metamyelocyte assay that measures the number of metamyelocytes + in a specimen. + meaning: OBI:0003161 + title: metamyelocyte count assay + OBI:0003162: + text: OBI:0003162 + description: A metamyelocyte assay that measures the percentage of metamyelocytes + in a specimen. + meaning: OBI:0003162 + title: metamyelocyte percentage assay + OBI:0003163: + text: OBI:0003163 + description: A methemoglobin assay that measures the percentage of methemoglobin + in a specimen. + meaning: OBI:0003163 + title: methemoglobin percentage assay + OBI:0003164: + text: OBI:0003164 + description: A monocyte assay that measures the percentage of monocytes in + a specimen. + meaning: OBI:0003164 + title: monocyte percentage assay + OBI:0003165: + text: OBI:0003165 + description: A myelocyte assay that measures the number of myelocytes in a + specimen. + meaning: OBI:0003165 + title: myelocyte count assay + OBI:0003166: + text: OBI:0003166 + description: A neutrophil assay that measures the percentage of neutrophils + in a specimen. + meaning: OBI:0003166 + title: neutrophil percentage assay + OBI:0003167: + text: OBI:0003167 + description: A phosphate ion assay that measures the concentration of phosphate + ions in a specimen. + meaning: OBI:0003167 + title: phosphate ion concentration assay + OBI:0003168: + text: OBI:0003168 + description: A potassium(1+) assay that measures the concentration of potassium(1+) + in a specimen. + meaning: OBI:0003168 + title: potassium(1+) concentration assay + OBI:0003170: + text: OBI:0003170 + description: A reticulocyte assay that measures the percentage of reticulocytes + in a specimen. + meaning: OBI:0003170 + title: reticulocyte percentage assay + OBI:0003171: + text: OBI:0003171 + description: A sodium(1+) assay that measures the concentration of sodium(1+) + in a specimen. + meaning: OBI:0003171 + title: sodium(1+) concentration assay + OBI:0003172: + text: OBI:0003172 + description: A thyroid stimulating hormone assay that measures the concentration + of thyroid stimulating hormone in a specimen. + meaning: OBI:0003172 + title: thyroid stimulating hormone concentration assay + OBI:0003173: + text: OBI:0003173 + description: A triglyceride assay that measures the concentration of triglycerides + in a specimen. + meaning: OBI:0003173 + title: triglyceride concentration assay + OBI:0003174: + text: OBI:0003174 + description: A 3,3',5'-triiodothyronine assay that measures the concentration + of 3,3',5'-triiodothyronine in a specimen. + meaning: OBI:0003174 + title: 3,3',5'-triiodothyronine concentration assay + OBI:0003175: + text: OBI:0003175 + description: A fibrinogen assay that measures the concentration of fibrinogen + in a specimen. + meaning: OBI:0003175 + title: fibrinogen concentration assay + OBI:0003176: + text: OBI:0003176 + description: A thyroxine assay that measures the concentration of free thyroxine + in a specimen. + meaning: OBI:0003176 + title: free thyroxine concentration assay + OBI:0003177: + text: OBI:0003177 + description: A thyroxine assay that measures the concentration of total thyroxine + in a specimen. + meaning: OBI:0003177 + title: total thyroxine concentration assay + OBI:0003180: + text: OBI:0003180 + description: A bilirubin IXalpha assay that measures the concentration of + direct bilirubin in a specimen. + meaning: OBI:0003180 + title: direct bilirubin concentration assay + OBI:0003181: + text: OBI:0003181 + description: A bilirubin IXalpha assay that measures the concentration of + indirect bilirubin in a specimen. + meaning: OBI:0003181 + title: indirect bilirubin concentration assay + OBI:0003182: + text: OBI:0003182 + description: A bilirubin IXalpha assay that measures the concentration of + total bilirubin in a specimen. + meaning: OBI:0003182 + title: total bilirubin concentration assay + OBI:0003183: + text: OBI:0003183 + description: A hemoglobin assay that measures the average concentration of + hemoglobin in a population of erythrocytes. + meaning: OBI:0003183 + title: mean cell hemoglobin assay + OBI:0003184: + text: OBI:0003184 + description: A hemoglobin assay that measures the concentration of hemoglobin + in a specimen. + meaning: OBI:0003184 + title: mean cell hemoglobin concentration assay + OBI:0003185: + text: OBI:0003185 + description: A platelet assay that measures the average volume of platelets + in a specimen. + meaning: OBI:0003185 + title: mean platelet volume assay + OBI:0003186: + text: OBI:0003186 + description: A neutrophil assay that measures the number of immature neutrophils + in a specimen. + meaning: OBI:0003186 + title: immature neutrophil count assay + OBI:0003187: + text: OBI:0003187 + description: An neutrophil assay that measures the percentage of immature + neutrophils in a specimen. + meaning: OBI:0003187 + title: immature neutrophil percentage assay + OBI:0003188: + text: OBI:0003188 + description: An erythrocyte assay that measures the percentage of nucleated + erythrocytes in a specimen. + meaning: OBI:0003188 + title: nucleated erythrocyte percentage assay + OBI:0003189: + text: OBI:0003189 + description: An erythrocyte assay that measures the average volume of erythrocytes + in a specimen. + meaning: OBI:0003189 + title: mean cell volume assay + OBI:0003190: + text: OBI:0003190 + description: A cytometry assay that measures the abundance and/or characteristics + of erythrocytes. + meaning: OBI:0003190 + title: erythrocyte assay + OBI:0003191: + text: OBI:0003191 + description: A hematocrit assay that measures the percentage of erythrocytes + in a specimen by manual processes. + meaning: OBI:0003191 + title: manual hematocrit assay + OBI:0003192: + text: OBI:0003192 + description: An analyte assay that measures the abundance of adiponectin + meaning: OBI:0003192 + title: adiponectin assay + OBI:0003193: + text: OBI:0003193 + description: An adiponectin assay that measures the concentration of adiponectin + in a specimen. + meaning: OBI:0003193 + title: adiponectin concentration assay + OBI:0003194: + text: OBI:0003194 + description: An analyte assay that measures the abundance of creatine + meaning: OBI:0003194 + title: creatine assay + OBI:0003195: + text: OBI:0003195 + description: A creatine assay that measures the concentration of creatine + in a specimen. + meaning: OBI:0003195 + title: creatine concentration assay + OBI:0003196: + text: OBI:0003196 + description: An analyte assay that measures the abundance of estradiol + meaning: OBI:0003196 + title: estradiol assay + OBI:0003197: + text: OBI:0003197 + description: An estradiol assay that measures the concentration of estradiol + in a specimen. + meaning: OBI:0003197 + title: estradiol concentration assay + OBI:0003202: + text: OBI:0003202 + description: An analyte assay that measures the abundance of leptin + meaning: OBI:0003202 + title: leptin assay + OBI:0003203: + text: OBI:0003203 + description: An leptin assay that measures the concentration of leptin in + a specimen. + meaning: OBI:0003203 + title: leptin concentration assay + OBI:0003204: + text: OBI:0003204 + description: An analyte assay that measures the abundance of lipoprotein + meaning: OBI:0003204 + title: lipoprotein concentration assay + OBI:0003205: + text: OBI:0003205 + description: A lipoprotein concentration assay that measures the concentration + of high-density lipoprotein in a specimen. + meaning: OBI:0003205 + title: high-density lipoprotein concentration assay + OBI:0003206: + text: OBI:0003206 + description: A lipoprotein concentration assay that measures the concentration + of low-density lipoprotein in a specimen. + meaning: OBI:0003206 + title: low-density lipoprotein concentration assay + OBI:0003207: + text: OBI:0003207 + description: A lipoprotein concentration assay that measures the concentration + of very-low-density lipoprotein in a specimen. + meaning: OBI:0003207 + title: very-low-density lipoprotein concentration assay + OBI:0003208: + text: OBI:0003208 + description: An analyte assay that measures the abundance of luteinizing hormone + meaning: OBI:0003208 + title: luteinizing hormone assay + OBI:0003209: + text: OBI:0003209 + description: A luteinizing hormone assay that measures the concentration of + luteinizing hormone in a specimen. + meaning: OBI:0003209 + title: luteinizing hormone concentration assay + OBI:0003210: + text: OBI:0003210 + description: An analyte assay that measures the abundance of nitrite + meaning: OBI:0003210 + title: nitrite assay + OBI:0003211: + text: OBI:0003211 + description: A nitrite assay that measures the concentration of nitrite in + a specimen. + meaning: OBI:0003211 + title: nitrite concentration assay + OBI:0003212: + text: OBI:0003212 + description: An analyte assay that measures the abundance of phospholipid + meaning: OBI:0003212 + title: phospholipid assay + OBI:0003213: + text: OBI:0003213 + description: A phospholipid assay that measures the concentration of phospholipids + in a specimen. + meaning: OBI:0003213 + title: phospholipid concentration assay + OBI:0003214: + text: OBI:0003214 + description: An analyte assay that measures the abundance of progesterone + meaning: OBI:0003214 + title: progesterone assay + OBI:0003215: + text: OBI:0003215 + description: A progesterone assay that measures the concentration of progesterone + in a specimen. + meaning: OBI:0003215 + title: progesterone concentration assay + OBI:0003216: + text: OBI:0003216 + description: An analyte assay that measures the abundance of testosterone + meaning: OBI:0003216 + title: testosterone assay + OBI:0003217: + text: OBI:0003217 + description: A testosterone assay that measures the concentration of testosterone + in a specimen. + meaning: OBI:0003217 + title: testosterone concentration assay + OBI:0003218: + text: OBI:0003218 + description: An analyte assay that measures the abundance of bile salt + meaning: OBI:0003218 + title: bile salt assay + OBI:0003219: + text: OBI:0003219 + description: A bile salt assay that measures the concentration of bile salt + in a specimen. + meaning: OBI:0003219 + title: bile salt concentration assay + OBI:0003220: + text: OBI:0003220 + description: An analyte assay that measures the abundance of fatty acid + meaning: OBI:0003220 + title: fatty acid assay + OBI:0003221: + text: OBI:0003221 + description: A fatty acid assay that measures the concentration of free fatty + acids in a specimen. + meaning: OBI:0003221 + title: free fatty acid concentration assay + OBI:0003222: + text: OBI:0003222 + description: An analyte assay that measures the abundance of insulin + meaning: OBI:0003222 + title: insulin assay + OBI:0003223: + text: OBI:0003223 + description: A insulin assay that measures the concentration of insulin in + a specimen. + meaning: OBI:0003223 + title: insulin concentration assay + OBI:0003224: + text: OBI:0003224 + description: An analyte assay that measures the abundance of follicle stimulating + hormone + meaning: OBI:0003224 + title: follicle stimulating hormone assay + OBI:0003225: + text: OBI:0003225 + description: A follicle stimulating hormone assay that measures the concentration + of follicle stimulating hormone in a specimen. + meaning: OBI:0003225 + title: follicle stimulating hormone concentration assay + OBI:0003226: + text: OBI:0003226 + description: A lymphocyte assay that measures the number of lymphocytes and + large unstained cells in a specimen. + meaning: OBI:0003226 + title: total lymphocyte count assay + OBI:0003227: + text: OBI:0003227 + description: A lymphocyte assay that measures the percentage of lymphocytes + and large unstained cells in a specimen. + meaning: OBI:0003227 + title: total lymphocyte percentage assay + OBI:0003228: + text: OBI:0003228 + description: A cytometry assay that detects the presence of cells that secrete + a material of interest (analyte). In the assay, a plate is coated with an + antibody specific to the analyte of interest. These antibodies capture the + analytes secreted by the cells. The analytes are then detected using fluorescent + labeled secondary antibodies. + meaning: OBI:0003228 + title: fluorescent immunospot assay + OBI:0003229: + text: OBI:0003229 + description: A proteomics profiling assay that detects proteins in a blood + plasma specimen. + meaning: OBI:0003229 + title: plasma proteomics assay + OBI:0003230: + text: OBI:0003230 + description: A flow cytometry assay that detects the presence/amount of antigen-specific + T cells without the need to identify their cytokine production. Instead, + antigen-specific T cells are detected on the basis of upregulation of TCR + stimulation-induced surface markers. + meaning: OBI:0003230 + title: T cell activation induced marker assay + OBI:0003232: + text: OBI:0003232 + description: An assay that has a cerebrospinal fluid specimen as evaluant. + meaning: OBI:0003232 + title: cerebrospinal fluid assay + OBI:0003233: + text: OBI:0003233 + description: An assay that has an endotracheal aspirate specimen as evaluant. + meaning: OBI:0003233 + title: endotracheal aspirate assay + OBI:0003234: + text: OBI:0003234 + description: An assay that has an induced sputum specimen as evaluant. + meaning: OBI:0003234 + title: induced sputum assay + OBI:0003235: + text: OBI:0003235 + description: An assay that has a lung specimen as evaluant. + meaning: OBI:0003235 + title: lung assay + OBI:0003236: + text: OBI:0003236 + description: An assay that has a milk specimen as evaluant. + meaning: OBI:0003236 + title: milk assay + OBI:0003237: + text: OBI:0003237 + description: An assay that has a feces specimen as evaluant. + meaning: OBI:0003237 + title: feces assay + OBI:0003238: + text: OBI:0003238 + description: An assay that has an umbilical cord blood specimen as evaluant. + meaning: OBI:0003238 + title: umbilical cord blood assay + OBI:0003239: + text: OBI:0003239 + description: An assay that has a saliva specimen as evaluant. + meaning: OBI:0003239 + title: saliva assay + OBI:0003240: + text: OBI:0003240 + description: An organism detection assay that detects microorganisms in a + cerebrospinal fluid specimen. + meaning: OBI:0003240 + title: cerebrospinal fluid microbiology assay + OBI:0003241: + text: OBI:0003241 + description: An organism detection assay that detects microorganisms in an + endotracheal aspirate specimen. + meaning: OBI:0003241 + title: endotracheal tube aspirate microbiology assay + OBI:0003242: + text: OBI:0003242 + description: An organism detection assay that detects microorganisms in an + induced sputum specimen. + meaning: OBI:0003242 + title: induced sputum microbiology assay + OBI:0003282: + text: OBI:0003282 + description: An organism detection assay that detects microorganisms in a + lung specimen. + meaning: OBI:0003282 + title: lung microbiology assay + OBI:0003283: + text: OBI:0003283 + description: An organism detection assay that detects microorganisms in a + pleural fluid specimen. + meaning: OBI:0003283 + title: pleural fluid microbiology assay + OBI:0003284: + text: OBI:0003284 + description: An organism detection assay that detects microorganisms in an + umbilical cord blood specimen. + meaning: OBI:0003284 + title: umbilical cord blood microbiology assay + OBI:0003285: + text: OBI:0003285 + description: An organism detection assay that detects microorganisms in a + nasopharyngeal or oropharyngeal swab specimen. + meaning: OBI:0003285 + title: nasopharyngeal or oropharyngeal swab microbiology assay + OBI:0003286: + text: OBI:0003286 + description: An organism detection assay that detects microorganisms in a + urine specimen. + meaning: OBI:0003286 + title: urine microbiology assay + OBI:0003287: + text: OBI:0003287 + description: A real time polymerase chain reaction assay in which multiple + DNA sequences are amplified in a single cycle. + meaning: OBI:0003287 + title: multiplex real time polymerase chain reaction assay + OBI:0003288: + text: OBI:0003288 + description: A real time reverse-transcription polymerase chain reaction assay + in which multiple DNA sequences are amplified in a single cycle. + meaning: OBI:0003288 + title: multiplex real time reverse-transcription polymerase chain reaction + assay + OBI:0003290: + text: OBI:0003290 + description: An assay that evaluates host-to-mosquito transmission of a parasite + organism by feeding a specimen of host blood infected with the parasite + organism to a collection of mosquitoes through a mosquito membrane feeding + device and, after a given time, dissecting the mosquitoes and counting the + number of parasite organisms within them. + meaning: OBI:0003290 + title: mosquito membrane feeding assay + OBI:0003292: + text: OBI:0003292 + description: A cytometric bead array assay that detects epitope specific granulysin + release by T cells. + meaning: OBI:0003292 + title: cytometric bead array assay measuring epitope specific granulysin release + by T cells + OBI:0003293: + text: OBI:0003293 + description: A cytometric bead array assay that detects epitope specific perforin + release by T cells. + meaning: OBI:0003293 + title: cytometric bead array assay measuring epitope specific perforin release + by T cells + OBI:0003294: + text: OBI:0003294 + description: A microscopy assay that uses staining to identify acid-fast organisms + in a specimen and does not require heating. + meaning: OBI:0003294 + title: modified acid-fast stain microscopy assay + OBI:0003296: + text: OBI:0003296 + description: An assay that evaluates a blood specimen for antibodies currently + being produced by lymphocytes in the specimen, by separating peripheral + blood mononuclear cells, culturing them, and then collecting the supernatant + containing the antibodies secreted from those cells. + meaning: OBI:0003296 + title: antibodies from lymphocyte secretions assay + OBI:0003297: + text: OBI:0003297 + description: A DNA sequencing assay that uses tyramide signal amplification + (TSA) to assess distance of DNA regions to a targeted nuclear compartment + or protein, typically on a scale of 100-1000 nm. + meaning: OBI:0003297 + title: tyramide signal amplification sequencing assay + OBI:0003298: + text: OBI:0003298 + description: An assay for identifying DNA binding sites for a protein by fusing + it to Dam methylase, and expressing it so that bound DNA gets methylated. + The methylated DNA can then be isolated and analyzed. + meaning: OBI:0003298 + title: DNA adenine methyltransferase identification assay + OBI:0003299: + text: OBI:0003299 + description: A DNA adenine methyltransferase identification (DamID) assay + in which DamID-generated DNA fragments undergo high-throughput sequencing + to determine a protein's DNA-binding site. + meaning: OBI:0003299 + title: DamID-seq + OBI:0003300: + text: OBI:0003300 + description: A DNA sequencing assay in which nucleoli are isolated and the + DNA associated with them is sequenced to identify nucleoli-associating domains. + meaning: OBI:0003300 + title: nucleolus-associated domain sequencing assay + OBI:0003301: + text: OBI:0003301 + description: A Hi-C assay in which DNase I is used for digesting DNA fragments + rather than a restriction enzyme, which can result in a higher resolution + of mapped chromosome contacts. + meaning: OBI:0003301 + title: DNase Hi-C assay + OBI:0003302: + text: OBI:0003302 + description: A Hi-C assay which uses micrococcal nuclease digestion in place + of the restriction enzyme digestion step. + meaning: OBI:0003302 + title: micro-C assay + OBI:0003303: + text: OBI:0003303 + description: A Hi-C assay performed on massively multiplexed single-cell samples. + meaning: OBI:0003303 + title: single cell combinatorial indexing Hi-C assay + OBI:0003304: + text: OBI:0003304 + description: A Hi-C assay performed on isolated nuclei. + meaning: OBI:0003304 + title: single nucleus Hi-C assay + OBI:0003305: + text: OBI:0003305 + description: A Hi-C assay performed on a single cell. + meaning: OBI:0003305 + title: single cell Hi-C assay + OBI:0003306: + text: OBI:0003306 + description: A Hi-C assay in which the sample that is sequenced is derived + from a collection of cells, such as a tissue sample or entire cell culture, + and therefore provides results representative of the aggregate of sample + cells. + meaning: OBI:0003306 + title: bulk Hi-C assay + OBI:0003307: + text: OBI:0003307 + description: A Hi-C assay that assesses interactions between multiple DNA + fragments rather than only pairwise interactions as in traditional Hi-C. + The experimental procedure of cross-linking, digestion, and ligation is + performed similarly to traditional Hi-C, but after DNA is purified a long-read + library is produced in which many ligated fragments may be contained in + a single molecule. The library is then sequenced on a long read sequencer. + meaning: OBI:0003307 + title: multi-contact Hi-C assay + OBI:0003309: + text: OBI:0003309 + description: A DNA sequencing assay designed to detect interacting genomic + regions. Rather than the traditional Hi-C approach of digestion and proximity + ligation, the procedure involves transposase-mediated insertion of an oligonucleotide + linker between the pair of interacting regions. + meaning: OBI:0003309 + title: transposase-mediated analysis of chromatin looping assay + OBI:0003310: + text: OBI:0003310 + description: A sequencing assay designed to detect multi-way interactions + between nucleic acids. The procedure involves crosslinking nuclei, and then + splitting the lysate among wells in a 96-well or other multi-well plate. + A different barcode is ligated to the fragments in each well, and the lysates + are pooled together again. This sequence of splitting, tagging, and re-combining + is repeated several times so that fragments with the same sequences of barcodes + represent fragments that have co-associated throughout the experiment. Finally, + a sequencing library is constructed and high-throughput sequencing is performed. + meaning: OBI:0003310 + title: split-pool recognition of interactions and tag extension assay + OBI:0003311: + text: OBI:0003311 + description: A split-pool recognition of interactions and tag extension (SPRITE) + assay that only assays interactions between regions of genomic DNA. + meaning: OBI:0003311 + title: DNA split-pool recognition of interactions and tag extension assay + OBI:0003312: + text: OBI:0003312 + description: A split-pool recognition of interactions and tag extension (SPRITE) + assay in which RNA in the cross-linked complexes is converted to cDNA before + the initial splitting step, allowing analysis of RNA-DNA interactions. + meaning: OBI:0003312 + title: RNA-DNA split-pool recognition of interactions and tag extension assay + OBI:0003313: + text: OBI:0003313 + description: A DNA sequencing assay designed to analyze 3D chromatin structure + without relying on digestion and ligation. The procedure involves cryosectioning + samples in random orientation, and then single nuclear profiles are isolated + by laser microdissection. Each nuclear profile then undergoes high-throughput + sequencing, and subsequent analysis can generate a matrix of inferred proximity + between genomic regions. + meaning: OBI:0003313 + title: genome architecture mapping assay + OBI:0003314: + text: OBI:0003314 + description: A nuclear ligation assay for probing RNA-DNA interactions in + the nucleus. Nuclei are crosslinked, and RNA fragments are ligated to proximal + DNA fragments via a special linker molecule. After reverse transcription, + high-throughput sequencing is performed. + meaning: OBI:0003314 + title: mapping RNA-genome interactions assay + OBI:0003315: + text: OBI:0003315 + description: A T cell epitope specific cytokine production assay that detects + amphiregulin production by T cells. + meaning: OBI:0003315 + title: assay measuring epitope specific amphiregulin production by T cells + OBI:0003316: + text: OBI:0003316 + description: An enzyme-linked immunosorbent assay that detects amphiregulin + production by T cells. + meaning: OBI:0003316 + title: ELISA measuring epitope specific amphiregulin production by T cells + OBI:0003321: + text: OBI:0003321 + description: A blood microbiology assay that detects a microorganism in a + venous blood specimen. + meaning: OBI:0003321 + title: venous blood microbiology assay + OBI:0003323: + text: OBI:0003323 + description: A B cell epitope assay that measures the binding of an antibody + receptor to an epitope using a high throughput multiplexed assay. + meaning: OBI:0003323 + title: high throughput multiplexed assay measuring binding of a B cell epitope:antibody + complex + OBI:0003324: + text: OBI:0003324 + description: A T cell epitope assay that measures the binding of T cell receptor + to an epitope using a high throughput multiplexed assay. + meaning: OBI:0003324 + title: high throughput multiplexed assay measuring binding of a T cell epitope:MHC:TCR + complex + OBI:0003325: + text: OBI:0003325 + description: A MHC ligand assay that detects the binding of a ligand to an + MHC molecule using a high throughput multiplexed assay. + meaning: OBI:0003325 + title: high throughput multiplexed assay measuring binding of a MHC:ligand + complex + OBI:0003326: + text: OBI:0003326 + description: A MHC ligand assay that determines what ligands are processed + and loaded onto MHC molecules by eluting ligands and identifying them using + a high throughput multiplexed assay. + meaning: OBI:0003326 + title: high throughput multiplexed assay measuring MHC ligand processing and + presentation + OBI:0003368: + text: OBI:0003368 + description: An assay (A) that is part of another assay (B), where the target + entities of A and B are disjoint, and the target entity of A is a proxy + for the target of assay B. + meaning: OBI:0003368 + title: detection technique + OBI:0003372: + text: OBI:0003372 + description: A T cell epitope specific cytokine production assay that detects + lymphotactin production by T cells. + meaning: OBI:0003372 + title: assay measuring epitope specific lymphotactin production by T cells + OBI:0003373: + text: OBI:0003373 + description: An enzyme-linked immunosorbent assay that detects lymphotactin + production by T cells. + meaning: OBI:0003373 + title: ELISA measuring epitope specific lymphotactin production by T cells + OBI:0003375: + text: OBI:0003375 + description: An assay that combines electrophysiological, transcriptomic, + and morphological characterization of individual neurons. In this approach, + patch-clamp is used to generate an electrophysiological recording of the + neuron, then the neuron's cytoplasm and/or nucleus is collected and processed + for RNAseq, and finally the cell is simultaneously filled with a dye that + allows for subsequent morphological reconstruction. + meaning: OBI:0003375 + title: patch-seq assay + OBI:0003376: + text: OBI:0003376 + description: 'A single-cell transcription profiling by RNA sequencing assay + that analyzes mRNA transcripts from droplets of individual cells. The process + involves the following steps: (1) prepare a single-cell suspension from + a tissue; (2) co-encapsulate each cell with a distinctly barcoded microparticle + (bead) in a nanoliter-scale droplet; (3) lyse cells after they have been + isolated in droplets; (4) capture a cell’s mRNAs on its companion microparticle, + forming STAMPs (single-cell transcriptomes attached to microparticles); + (5) reverse-transcribe, amplify, and sequence.' + meaning: OBI:0003376 + title: droplet-based single-cell RNA sequencing assay + OBI:0003377: + text: OBI:0003377 + description: An assay that uses combinatorial indexing to generate a library + of cDNA and open chromatin gDNA fragments by tagmenting a single nuclei + and open chromatin, and encapsulating those in a droplet including both + an oligo-dT-containing barcoded bead and a splint oligonucleotide, which + links the tagmented gDNA fragments to the bead which capture both mRNAs + and open chromatin fragments. + meaning: OBI:0003377 + title: single-nucleus chromatin accessibility and mRNA expression sequencing + 2 assay + OBI:0003378: + text: OBI:0003378 + description: A single cell transcription profiling by RNA sequencing assay + wherein cells are lysed and their recovered RNA is hybridized to an oligo(dT) + that primes a reverse transcription reaction, the outcome of which are cDNA’s + that have PCR handles on both ends. The cDNA's are then amplified using + PCR, and the products are sequenced. + meaning: OBI:0003378 + title: switching mechanism at the 5' end of RNA template sequencing assay + OBI:0003379: + text: OBI:0003379 + description: A single cell transcription profiling by RNA sequencing assay + that is a variation on the switching mechanism at the 5' end of RNA template + sequencing assay (SMARTseq) that allows the generation of full-length cDNA + and sequencing libraries by using standard reagents. + meaning: OBI:0003379 + title: switching mechanism at the 5' end of RNA template sequencing 2 assay + OBI:0003381: + text: OBI:0003381 + description: A blood microbiology assay that detects microorganisms in a placental + blood specimen. + meaning: OBI:0003381 + title: placental blood microbiology assay + OBI:0003412: + text: OBI:0003412 + description: A DNA sequencing assay that uses microfluidics to partition and + barcode high molecular weight DNA such that short reads derived from fragments + of the large piece of DNA can be assembled within the context of the high + molecular weight piece of DNA they are derived from, facilitating the use + of short read data to sequence and assemble large genomes. + meaning: OBI:0003412 + title: linked-read sequencing assay + OBI:0003418: + text: OBI:0003418 + description: An antigen specific antibodies assay that has a blood specimen + as evaluant. + meaning: OBI:0003418 + title: antigen specific antibodies in blood assay + OBI:0003419: + text: OBI:0003419 + description: An antigen specific antibodies assay that has a milk specimen + as evaluant. + meaning: OBI:0003419 + title: antigen specific antibodies in milk assay + OBI:0003422: + text: OBI:0003422 + description: An assay in which the level of catalytic activity of an enzyme + is determined. + meaning: OBI:0003422 + title: enzymatic activity level assay + OBI:0003423: + text: OBI:0003423 + description: An enzymatic activity level assay that measures the activity + of 5'-nucleotidase in a sample. + meaning: OBI:0003423 + title: 5'-nucleotidase activity level assay + OBI:0003424: + text: OBI:0003424 + description: An enzymatic activity level assay that measures the activity + of alanine aminotransferase in a sample. + meaning: OBI:0003424 + title: alanine aminotransferase activity level assay + OBI:0003425: + text: OBI:0003425 + description: An enzymatic activity level assay that measures the activity + of alkaline phosphatase in a sample. + meaning: OBI:0003425 + title: alkaline phosphatase activity level assay + OBI:0003426: + text: OBI:0003426 + description: An enzymatic activity level assay that measures the activity + of amylase in a sample. + meaning: OBI:0003426 + title: amylase activity level assay + OBI:0003427: + text: OBI:0003427 + description: An enzymatic activity level assay that measures the activity + of aspartate aminotransferase in a sample. + meaning: OBI:0003427 + title: aspartate aminotransferase activity level assay + OBI:0003428: + text: OBI:0003428 + description: An enzymatic activity level assay that measures the activity + of cholinesterase in a sample. + meaning: OBI:0003428 + title: cholinesterase activity level assay + OBI:0003429: + text: OBI:0003429 + description: An enzymatic activity level assay that measures the activity + of creatine kinase in a sample. + meaning: OBI:0003429 + title: creatine kinase activity level assay + OBI:0003430: + text: OBI:0003430 + description: An enzymatic activity level assay that measures the activity + of gamma-glutamyltransferase in a sample. + meaning: OBI:0003430 + title: gamma-glutamyltransferase activity level assay + OBI:0003431: + text: OBI:0003431 + description: An enzymatic activity level assay that measures the activity + of glutamate dehydrogenase in a sample. + meaning: OBI:0003431 + title: glutamate dehydrogenase activity level assay + OBI:0003432: + text: OBI:0003432 + description: An enzymatic activity level assay that measures the activity + of isocitrate dehydrogenase in a sample. + meaning: OBI:0003432 + title: isocitrate dehydrogenase activity level assay + OBI:0003433: + text: OBI:0003433 + description: An enzymatic activity level assay that measures the activity + of lactate dehydrogenase in a sample. + meaning: OBI:0003433 + title: lactate dehydrogenase activity level assay + OBI:0003434: + text: OBI:0003434 + description: An enzymatic activity level assay that measures the activity + of sorbitol dehydrogenase in a sample. + meaning: OBI:0003434 + title: sorbitol dehydrogenase activity level assay + OBI:0003435: + text: OBI:0003435 + description: An enzymatic activity level assay that measures the activity + of Acyl-CoA oxidase in a sample. + meaning: OBI:0003435 + title: acyl-CoA oxidase activity level assay + OBI:0003436: + text: OBI:0003436 + description: An enzymatic activity level assay that measures the activity + of N-acetyl-beta-glucosaminidase in a sample. + meaning: OBI:0003436 + title: N-acetyl-beta-glucosaminidase activity level assay + OBI:0003437: + text: OBI:0003437 + description: An enzymatic activity level assay that measures the activity + of ribonuclease in a sample. + meaning: OBI:0003437 + title: ribonuclease activity level assay + OBI:0003438: + text: OBI:0003438 + description: An enzymatic activity level assay that measures the activity + of galactosidase in a sample. + meaning: OBI:0003438 + title: galactosidase activity level assay + OBI:0003457: + text: OBI:0003457 + description: An epitope protection from infectious challenge experiment that + determines the success of the epitope intervention based on increased survival + of the host compared to controls. + meaning: OBI:0003457 + title: epitope protection from infectious challenge experiment based on survival + OBI:0003458: + text: OBI:0003458 + description: An epitope protection from tumor challenge experiment in which + the readout is a reduction in the presence of malignant cells in the host + compared to controls. + meaning: OBI:0003458 + title: epitope protection from tumor challenge experiment based on burden + OBI:0003459: + text: OBI:0003459 + description: An epitope protection from tumor challenge experiment that determines + the success of the epitope intervention based on increased survival of the + host compared to controls. + meaning: OBI:0003459 + title: epitope protection from tumor challenge experiment based on survival + OBI:0003460: + text: OBI:0003460 + description: An in vivo assay measuring T cell epitope specific protection + from pathogen challenge. + meaning: OBI:0003460 + title: in vivo assay measuring T cell epitope specific protection from pathogen + challenge + OBI:0003461: + text: OBI:0003461 + description: An in vivo assay measuring T cell epitope specific protection + from tumor challenge. + meaning: OBI:0003461 + title: in vivo assay measuring T cell epitope specific protection from tumor + challenge + OBI:0003462: + text: OBI:0003462 + description: An in vivo assay measuring T cell epitope specific protection + from a challenge other than pathogen, infection, or tumor. + meaning: OBI:0003462 + title: in vivo assay measuring T cell epitope specific protection from other + challenge + OBI:0003463: + text: OBI:0003463 + description: An in vivo assay measuring T cell epitope specific protection + from tumor challenge using survival. + meaning: OBI:0003463 + title: in vivo assay measuring T cell epitope specific survival after tumor + challenge + OBI:0003464: + text: OBI:0003464 + description: An in vivo assay measuring T cell epitope specific protection + from pathogen challenge using survival. + meaning: OBI:0003464 + title: in vivo assay measuring T cell epitope specific survival after pathogen + challenge + OBI:0003465: + text: OBI:0003465 + description: An in vivo assay measuring B cell epitope specific protection + from pathogen challenge. + meaning: OBI:0003465 + title: in vivo assay measuring B cell epitope specific protection from pathogen + challenge + OBI:0003466: + text: OBI:0003466 + description: An in vivo assay measuring B cell epitope specific protection + from tumor challenge. + meaning: OBI:0003466 + title: in vivo assay measuring B cell epitope specific protection from tumor + challenge + OBI:0003467: + text: OBI:0003467 + description: An in vivo assay measuring B cell epitope specific protection + from a challenge other than pathogen, infection, or tumor. + meaning: OBI:0003467 + title: in vivo assay measuring B cell epitope specific protection from other + challenge + OBI:0003468: + text: OBI:0003468 + description: An in vivo assay measuring B cell epitope specific protection + from pathogen challenge using survival. + meaning: OBI:0003468 + title: in vivo assay measuring B cell epitope specific survival after pathogen + challenge + OBI:0003469: + text: OBI:0003469 + description: An in vivo assay measuring B cell epitope specific protection + from tumor challenge using survival. + meaning: OBI:0003469 + title: in vivo assay measuring B cell epitope specific survival after tumor + challenge + OBI:0003470: + text: OBI:0003470 + description: An in vivo assay measuring a T cell epitope specific protection + from a pathogen challenge after adoptive transfer of epitope specific antibodies + or B cells. + meaning: OBI:0003470 + title: in vivo assay measuring T cell epitope specific protection from pathogen + challenge resulting from the adoptive transfer of epitope specific T cells + OBI:0003471: + text: OBI:0003471 + description: An in vivo assay measuring T cell epitope specific protection + from pathogen challenge resulting from the adoptive transfer of epitope + specific T cells using survival. + meaning: OBI:0003471 + title: in vivo assay measuring T cell epitope specific pathogen protection + from challenge resulting from the adoptive transfer of epitope specific + T cells based on survival + OBI:0003472: + text: OBI:0003472 + description: An in vivo assay measuring a T cell epitope specific protection + from a tumor challenge after adoptive transfer of epitope specific T cells. + meaning: OBI:0003472 + title: in vivo assay measuring T cell epitope specific protection from tumor + challenge resulting from the adoptive transfer of epitope specific T cells + OBI:0003473: + text: OBI:0003473 + description: An in vivo assay measuring T cell epitope specific protection + from tumor challenge resulting from the adoptive transfer of epitope specific + T cells using survival. + meaning: OBI:0003473 + title: in vivo assay measuring T cell epitope specific protection from tumor + challenge resulting from the adoptive transfer of epitope specific T cells + based on survival + OBI:0003474: + text: OBI:0003474 + description: An in vivo assay measuring a T cell epitope specific protection + from other challenge after adoptive transfer of epitope specific T cells. + meaning: OBI:0003474 + title: in vivo assay measuring T cell epitope specific protection from other + challenge resulting from the adoptive transfer of epitope specific T cells + OBI:0003475: + text: OBI:0003475 + description: An in vivo assay measuring a B cell epitope specific protection + from a pathogen challenge after adoptive transfer of epitope specific antibodies + or B cells. + meaning: OBI:0003475 + title: in vivo assay measuring B cell epitope specific protection from pathogen + challenge resulting from the adoptive transfer of epitope specific antibodies + or B cells + OBI:0003476: + text: OBI:0003476 + description: An in vivo assay measuring B cell epitope specific protection + from pathogen challenge resulting from the adoptive transfer of epitope + specific antibodies or B cells using survival. + meaning: OBI:0003476 + title: in vivo assay measuring B cell epitope specific pathogen protection + from challenge resulting from the adoptive transfer of epitope specific + antibodies or B cells based on survival + OBI:0003477: + text: OBI:0003477 + description: An in vivo assay measuring a B cell epitope specific protection + from a tumor challenge after adoptive transfer of epitope specific antibodies + or B cells. + meaning: OBI:0003477 + title: in vivo assay measuring B cell epitope specific protection from tumor + challenge resulting from the adoptive transfer of epitope specific antibodies + or B cells + OBI:0003478: + text: OBI:0003478 + description: An in vivo assay measuring B cell epitope specific protection + from tumor challenge resulting from the adoptive transfer of epitope specific + antibodies or B cells using survival. + meaning: OBI:0003478 + title: in vivo assay measuring B cell epitope specific protection from tumor + challenge resulting from the adoptive transfer of epitope specific antibodies + or B cells based on survival + OBI:0003479: + text: OBI:0003479 + description: An in vivo assay measuring a B cell epitope specific protection + from other challenge after adoptive transfer of epitope specific antibodies + or B cells. + meaning: OBI:0003479 + title: in vivo assay measuring B cell epitope specific protection from other + challenge resulting from the adoptive transfer of epitope specific antibodies + or B cells + OBI:0003480: + text: OBI:0003480 + description: An organism detection assay that identifies bacteria based on + the differential retention of a crystal violet-iodine complex within the + cell wall. + meaning: OBI:0003480 + title: Gram stain assay + OBI:0003484: + text: OBI:0003484 + description: A T cell epitope specific cytokine production assay that detects + interleukin-25 production by T cells. + meaning: OBI:0003484 + title: assay measuring epitope specific interleukin-25 production by T cells + OBI:0003485: + text: OBI:0003485 + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-25 production by T cells. + meaning: OBI:0003485 + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-25 production by T cells + OBI:0003486: + text: OBI:0003486 + description: A flow cytometry assay that detects interleukin-25 production + by T cells. + meaning: OBI:0003486 + title: intracellular cytokine staining assay measuring epitope specific interleukin-25 + production by T cells + OBI:0003487: + text: OBI:0003487 + description: An enzyme-linked immunosorbent assay that detects interleukin-25 + production by T cells. + meaning: OBI:0003487 + title: ELISA measuring epitope specific interleukin-25 production by T cells + OBI:0003488: + text: OBI:0003488 + description: A reporter cell line analyte detection bioassay that detects + tumor necrosis factor superfamily cytokine production by T cells. + meaning: OBI:0003488 + title: cell culture analyte detection bioassay measuring epitope specific + tumor necrosis factor superfamily cytokine production by T cells + OBI:0003498: + text: OBI:0003498 + description: An assay that detects a type of organism and/or the quantity + of individuals of a type of organism. + meaning: OBI:0003498 + title: organism detection assay + OBI:0003501: + text: OBI:0003501 + description: A physical examination of an organism's ability to perform functional + activities. + meaning: OBI:0003501 + title: functional assessment of individual + OBI:0003502: + text: OBI:0003502 + description: An observational assessment of the loss of facial muscle tissue + due to inactivity or disease. + meaning: OBI:0003502 + title: facial atrophy assessment + OBI:0003503: + text: OBI:0003503 + description: An observational assessment of the loss of muscle tissue related + to tongue movement due to inactivity or disease. + meaning: OBI:0003503 + title: tongue atrophy assessment + OBI:0003504: + text: OBI:0003504 + description: A functional assessment of an individual's ability to cough forcefully. + meaning: OBI:0003504 + title: forced cough assessment + OBI:0003505: + text: OBI:0003505 + description: A functional assessment of an individual's ability to understandably + repeat spoken sentences. + meaning: OBI:0003505 + title: speech test assessment + OBI:0003506: + text: OBI:0003506 + description: A functional assessment of an individual's ability to touch index + fingers together in front of the sternum without oscillation for a specified + duration of time + meaning: OBI:0003506 + title: finger to finger assessment + OBI:0003507: + text: OBI:0003507 + description: A functional assessment of an individual's ability to touch their + own nose and then touch an examiners finger in front of them and then touch + their own nose once more. + meaning: OBI:0003507 + title: nose to finger assessment + OBI:0003508: + text: OBI:0003508 + description: A functional assessment of an individual's ability to accurately + touch a moving target with their finger and then touch their own chin a + number of times in a row. + meaning: OBI:0003508 + title: dysmetria assessment + OBI:0003509: + text: OBI:0003509 + description: A functional assessment of an individual's ability to alternate + the forearm between pronation and suppination as quickly as possible during + a specified duration of time + meaning: OBI:0003509 + title: rapid alternating hands assessment + OBI:0003510: + text: OBI:0003510 + description: A functional assessment of an individual's ability to touch their + finger-tip to thumb as many times as possible during a specified duration + of time. + meaning: OBI:0003510 + title: finger taps assessment + OBI:0003511: + text: OBI:0003511 + description: A functional assessment of an individual's ability to slide their + heel back and forth along their contralateral tibia from the patella to + the ankle with the contralateral leg extended. + meaning: OBI:0003511 + title: heel along shin assessment + OBI:0003512: + text: OBI:0003512 + description: A functional assessment of an individual's ability to tap their + heel to the midpoint of the contralateral shin a number of times. + meaning: OBI:0003512 + title: heel to shin assessment + OBI:0003513: + text: OBI:0003513 + description: An observational assesment of an individual's muscle tissue loss + due to inactivity or disease. + meaning: OBI:0003513 + title: muscle atrophy assessment + OBI:0003514: + text: OBI:0003514 + description: A functional assessment of an individual's ability to perform + muscle movement to overcome gravity or physical resistence. + meaning: OBI:0003514 + title: muscle weakness assessment + OBI:0003515: + text: OBI:0003515 + description: A functional assessment of an individual's ability to sense vibration. + meaning: OBI:0003515 + title: vibratory sense assessment + OBI:0003516: + text: OBI:0003516 + description: A functional assessment of an individual's ability to sense the + position of a finger or toe that has been manipulated by minimal random + movements. + meaning: OBI:0003516 + title: position sense assessment + OBI:0003517: + text: OBI:0003517 + description: A functional assessment of an individual's muscle contraction + when a muscle is triggered by a signal from a muscle spindle in response + to a stimulus applied to a specific trigger point on the body. + meaning: OBI:0003517 + title: deep tendon reflex assessment + OBI:0003518: + text: OBI:0003518 + description: The functional assessment of an individual's ability to maintain + balance, posture or upright stability. + meaning: OBI:0003518 + title: limits of stability assessment + OBI:0003519: + text: OBI:0003519 + description: A limits of stability assessment designed to assess an individual's + ability to maintain unsupported posture while sitting over a given time + period. + meaning: OBI:0003519 + title: sitting posture assessment + OBI:0003520: + text: OBI:0003520 + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance with feet 20 cm apart. + meaning: OBI:0003520 + title: stance feet apart assessment + OBI:0003521: + text: OBI:0003521 + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance with their eyes closed. + meaning: OBI:0003521 + title: stance feet apart assessment, with eyes closed + OBI:0003522: + text: OBI:0003522 + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance with feet together. + meaning: OBI:0003522 + title: stance feet together assessment + OBI:0003523: + text: OBI:0003523 + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance with feet together and eyes closed. + meaning: OBI:0003523 + title: stance feet together assessment, with eyes closed + OBI:0003524: + text: OBI:0003524 + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance with feet in tandem placement. + meaning: OBI:0003524 + title: tandem stance assessment + OBI:0003525: + text: OBI:0003525 + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance on one foot. + meaning: OBI:0003525 + title: stance on one foot assessment + OBI:0003526: + text: OBI:0003526 + description: A limits of stability assessment designed to assess an individual's + ability to maintain balance while walking in a straight line placing steps + in tandem. + meaning: OBI:0003526 + title: tandem walk assessment + OBI:0003527: + text: OBI:0003527 + description: A limits of stability assessment designed to assess an individual's + manner or pattern of walking. + meaning: OBI:0003527 + title: gait assessment + OBI:0003528: + text: OBI:0003528 + description: A functional assessment of an individual's lower cranial nerve + function via proxy of facial muscle performance. + meaning: OBI:0003528 + title: bulbar assessment + OBI:0003529: + text: OBI:0003529 + description: A functional assessment of an individual's ability to articulate + spoken words. + meaning: OBI:0003529 + title: spontaneous speech assessment + OBI:0003530: + text: OBI:0003530 + description: A functional assessment of an individual's ability to coordinate + limb movement. + meaning: OBI:0003530 + title: limb coordination assessment + OBI:0003531: + text: OBI:0003531 + description: A limb coordination assessment designed to assess an individual's + ability to coordinate upper limb movement. + meaning: OBI:0003531 + title: upper limb coordination assessment + OBI:0003532: + text: OBI:0003532 + description: A limb coordination assessment designed to assess an individual's + ability to coordinate lower limb movement. + meaning: OBI:0003532 + title: lower limb coordination assessment + OBI:0003533: + text: OBI:0003533 + description: A functional assesment of an individual's nerve performance. + Specifically the nerves connecting the sensory and motor structures with + the central nervous system. + meaning: OBI:0003533 + title: nervous system functionality assessment + OBI:0003534: + text: OBI:0003534 + description: A functional assessment of an individual's ability to maintain + upright body posture. + meaning: OBI:0003534 + title: upright stability assessment + OBI:0003535: + text: OBI:0003535 + description: A deep tendon reflex assessment of an individual's reaction to + stimulus applied to a knee joint. + meaning: OBI:0003535 + title: deep tendon reflex assessment of the knee joint + OBI:0003536: + text: OBI:0003536 + description: A physical examination of an organism through visual assesment. + meaning: OBI:0003536 + title: observational assessment of individual + OBI:0003537: + text: OBI:0003537 + description: A deep tendon reflex assessment of an individual's reaction to + stimulus applied to an ankle joint. + meaning: OBI:0003537 + title: deep tendon reflex assessment of the ankle joint + OBI:0003538: + text: OBI:0003538 + description: A deep tendon reflex assessment of an individual's reaction to + stimulus applied to a tendon of biceps brachii. + meaning: OBI:0003538 + title: deep tendon reflex assessment of the tendon of biceps brachii + OBI:0003539: + text: OBI:0003539 + description: A deep tendon reflex assessment of an individual's reaction to + stimulus applied to a brachioradialis. + meaning: OBI:0003539 + title: deep tendon reflex assessment of the brachioradialis + OBI:0003540: + text: OBI:0003540 + description: A mass spectrometry assay that uses two or more analyzers separated + by a region in which ions can be induced to fragment by transfer of energy + (frequently by collision with other molecules). + meaning: OBI:0003540 + title: tandem mass spectrometry assay + OBI:0003541: + text: OBI:0003541 + description: An enzyme-linked immunosorbent assay that detects the IgM antibody + that binds Orientia tsutsugamushi. + meaning: OBI:0003541 + title: ELISA measuring Orientia tsutsugamushi IgM antibody + OBI:0003542: + text: OBI:0003542 + description: A microarray assay that detects the IgM antibody that binds Dengue. + meaning: OBI:0003542 + title: microarray assay measuring Dengue IgM antibody + OBI:0003543: + text: OBI:0003543 + description: A microarray assay that detects NS1. + meaning: OBI:0003543 + title: microarray assay measuring NS1 + OBI:0003544: + text: OBI:0003544 + description: Analytical chromatography that detects the IgM antibody that + binds Chikungunya. + meaning: OBI:0003544 + title: analytical chromatography measuring Chikungunya IgM antibody + OBI:0003545: + text: OBI:0003545 + description: An enzyme-linked immunosorbent assay that detects the IgM antibody + that binds Chikungunya. + meaning: OBI:0003545 + title: ELISA measuring Chikungunya IgM antibody + OBI:0003546: + text: OBI:0003546 + description: An enzyme-linked immunosorbent assay that uses a microarray as + the solid support and detects the IgM antibody that binds Chikungunya. + meaning: OBI:0003546 + title: microarray ELISA measuring Chikungunya IgM antibody + OBI:0003552: + text: OBI:0003552 + description: A chromosome conformation capture assay in which proximity ligation + is conducted in nuclei prior to chromatin shearing and immunoprecipitation. + Immunopreciptation with an antibody that targets a transcription factor + or histone modification allows for selection and enrichment of specific + genomic regions for investigation of long-range chromosomal interactions. + meaning: OBI:0003552 + title: proximity ligation-assisted ChIP-seq + OBI:0003576: + text: OBI:0003576 + description: An organism detection assay that detects microorganisms in a + skin of body specimen. + meaning: OBI:0003576 + title: skin of body microbiology assay + OBI:0003578: + text: OBI:0003578 + description: An organism detection assay that detects microorganisms in a + bone marrow specimen. + meaning: OBI:0003578 + title: bone marrow microbiology assay + OBI:0003580: + text: OBI:0003580 + description: An organism detection assay that detects microorganisms in a + nasal aspirate specimen. + meaning: OBI:0003580 + title: nasal aspirate microbiology assay + OBI:0003582: + text: OBI:0003582 + description: A cell proliferation assay that uses carboxyfluorescein succinimidyl + ester staining to detect cell division. + meaning: OBI:0003582 + title: cell proliferation assay using carboxyfluorescein succinimidyl ester + staining + OBI:0003583: + text: OBI:0003583 + description: A cytometry assay which measures the number of living cells in + a population. + meaning: OBI:0003583 + title: cell viability assay + OBI:0003584: + text: OBI:0003584 + description: A cell viability assay that uses Annexin V staining to detect + apoptotic cells. + meaning: OBI:0003584 + title: cell viability assay using Annexin V staining + OBI:0003587: + text: OBI:0003587 + description: An assay that has cell culture as an input. + meaning: OBI:0003587 + title: cell culture assay + OBI:0003589: + text: OBI:0003589 + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to Epstein-Barr virus (EBV) antigens in a serum sample. + meaning: OBI:0003589 + title: serum anti-Epstein-Barr virus antibody level assay + OBI:0003590: + text: OBI:0003590 + description: A CMV antibody assay that has serum as an input. + meaning: OBI:0003590 + title: serum anti-cytomegalovirus antibody level assay + OBI:0003598: + text: OBI:0003598 + description: A B cell receptor repertoire sequencing assay that determines + the sequence of DNA or RNA molecules that encode the repertoire of B cell + receptors that can be traced to a single cell of origin. + meaning: OBI:0003598 + title: single cell B cell receptor repertoire sequencing assay + OBI:0003599: + text: OBI:0003599 + description: A T cell receptor repertoire sequencing assay that determines + the sequence of DNA or RNA molecules that encode the repertoire of T cell + receptors that can be traced to a single cell of origin. + meaning: OBI:0003599 + title: single cell T cell receptor repertoire sequencing assay + OBI:0003601: + text: OBI:0003601 + description: An assay that measures the change in frequency of a quartz crystal + resonator resulting from the addition or removal of a small mass of a ligand + specifically binding at the surface of the resonator. + meaning: OBI:0003601 + title: quartz crystal microbalance assay + OBI:0003602: + text: OBI:0003602 + description: A quartz crystal microbalance assay that measures the dissociation + constant [KD] of an antigen binding with an antibody. + meaning: OBI:0003602 + title: quartz crystal microbalance assay measuring the dissociation constant + [KD] of a B cell epitope:antibody complex + OBI:0003604: + text: OBI:0003604 + description: A fluorescence in-situ hybridization assay that uses combinatorial + FISH labeling with error resistant encoding schemes for highly multiplexed + single-molecule imaging. + meaning: OBI:0003604 + title: multiplexed error-robust fluorescence in situ hybridization assay + OBI:0003605: + text: OBI:0003605 + description: A fluorescence in-situ hybridization assay that detects single + RNA molecules in fixed cells, allowing for both the quantification and localization + at the single-cell level and single-molecule resolution. + meaning: OBI:0003605 + title: single molecule fluorescence in situ hybridization + OBI:0003612: + text: OBI:0003612 + description: An electron-microscopy 3D molecular structure determination assay + that characterizes the 3-dimensional molecular structrue of a T cell epitope:MHC:TCR + complex. + meaning: OBI:0003612 + title: electron microscopy assay determining the 3D structure of a T cell + epitope:MHC:TCR complex + OBI:0003613: + text: OBI:0003613 + description: An electron-microscopy 3D molecular structure determination assay + that characterizes the 3-dimensional molecular structrue of a MHC:ligand + complex. + meaning: OBI:0003613 + title: electron microscopy assay determining the 3D structure of a MHC:ligand + complex + OBI:0003659: + text: OBI:0003659 + description: An assay in which cells expressing a Cas system are infected + with a library of guide RNAs with the intent of causing a perturbation at + the target of the guide RNAs. + meaning: OBI:0003659 + title: in vitro CRISPR screen assay + OBI:0003660: + text: OBI:0003660 + description: An in vitro CRISPR screen assay that uses single-cell RNA-Seq + to detect induced changes in gene expression. + meaning: OBI:0003660 + title: in vitro CRISPR screen using single-cell RNA-seq + OBI:0003661: + text: OBI:0003661 + description: An in vitro CRISPR screen assay that uses flow cytometry to detect + induced changes in gene expression of the targeted genes. + meaning: OBI:0003661 + title: in vitro CRISPR screen using flow cytometry + OBI:0003662: + text: OBI:0003662 + description: A DNA methylation profiling by high throughput sequencing assay + that measures the cytosine DNA methylation and gene expression signature + of single nuclei. + meaning: OBI:0003662 + title: single-nucleus methylcytosine and transcriptome sequencing assay + OBI:0003686: + text: OBI:0003686 + description: An assay that determines which regions of a DNA molecule are + in the form of euchromatin and thus able to make direct physical contact + with (i.e. are accessible to) other molecules such as RNA polymerase, transcription + factors, etc. + meaning: OBI:0003686 + title: chromatin accessibility assay + OBI:0003687: + text: OBI:0003687 + description: A DNA methylation profiling assay in which chromatin stencils + are created by treating nuclei with m6A methyltransferase (MTase) and then + sequenced using single-molecule circular consensus sequencing to identify + regions of accessible DNA at nucleotide resolution. + meaning: OBI:0003687 + title: m6A-MTase sequencing assay + OBI:0003709: + text: OBI:0003709 + description: A nervous system functionality assessment of learning or memory + in an organism + meaning: OBI:0003709 + title: assessment of learning and/or memory response in an organism + OBI:0003710: + text: OBI:0003710 + description: A nervous system functionality assessment of auditory startle + response in an organism in an anechoic chamber by exposing to sound. + meaning: OBI:0003710 + title: assessment of startle response in an organism + OBI:0003711: + text: OBI:0003711 + description: A nervous system functionality assessment that uses the grip + strength of a lab animal to measure neuromuscular function. + meaning: OBI:0003711 + title: grip strength assay + OBI:0003712: + text: OBI:0003712 + description: A physical examination to assess behavior quality in a live organism. + meaning: OBI:0003712 + title: assay of organismal behavior + OBI:0003713: + text: OBI:0003713 + description: A physical examination of an organism that provides information + about some developmental process in that organism. + meaning: OBI:0003713 + title: organism development assay + OBI:0003714: + text: OBI:0003714 + description: A physical examination of an organism that provides information + about some reproductive process in that organism. + meaning: OBI:0003714 + title: reproductive assay + OBI:0003715: + text: OBI:0003715 + description: An assay of a organism to measure basic physiological functions + such as breathing, pulse, etc. (phylum bilateral). + meaning: OBI:0003715 + title: vital sign assay + OBI:0003716: + text: OBI:0003716 + description: A vital sign assay that determines the blood pressure (force + of blood against the artery walls) of an organism. + meaning: OBI:0003716 + title: blood pressure assay + OBI:0003717: + text: OBI:0003717 + description: A pulse rate assay that measures beat to beat variability in + heart beats. + meaning: OBI:0003717 + title: heart rate variability assay + OBI:0003718: + text: OBI:0003718 + description: A vital sign assay that measures the heart beat rate of an organism. + meaning: OBI:0003718 + title: pulse rate assay + OBI:0003719: + text: OBI:0003719 + description: A vital sign assay that measures the quality of respiration / + respiratory system of an organism + meaning: OBI:0003719 + title: respiratory assay + OBI:0003720: + text: OBI:0003720 + description: A cytometry assay that monitors the differentiation stage of + cells in culture. + meaning: OBI:0003720 + title: cell differentiation assay + OBI:0003721: + text: OBI:0003721 + description: A cytometry assay that measures DNA damage in cells. + meaning: OBI:0003721 + title: cell based DNA damage assay + OBI:0003722: + text: OBI:0003722 + description: A cytometry assay to determine the number of natural killer cells + in a specimen + meaning: OBI:0003722 + title: natural killer cell count assay + OBI:0003723: + text: OBI:0003723 + description: A cytometry assay that measures the percentage of natural killer + cells in a specimen. + meaning: OBI:0003723 + title: natural killer cell percentage assay + OBI:0003724: + text: OBI:0003724 + description: A cytometry assay to count the number of mature sperm in a specimen. + meaning: OBI:0003724 + title: sperm count assay + OBI:0003725: + text: OBI:0003725 + description: An assay that obtains data from one or more participants by using + a survey or questionnaire + meaning: OBI:0003725 + title: survey administration assay + OBI:0003734: + text: OBI:0003734 + description: A clinical assay that produces a data item indicating whether + an organism has ever had a particular disease, lifestyle factor, immune + exposure, or medical procedure. + meaning: OBI:0003734 + title: clinical history collection assay + OBI:0003735: + text: OBI:0003735 + description: An assay that measures the severity of a disease in an organism. + meaning: OBI:0003735 + title: disease severity assay + OBI:0003736: + text: OBI:0003736 + description: An assay that produces information about a genetic characteristic + of an organism. + meaning: OBI:0003736 + title: genetic characteristic assay + OBI:0003738: + text: OBI:0003738 + description: An assay that classifies an organism's blood within one or more + blood group classification systems by identifying antigens present in the + blood. + meaning: OBI:0003738 + title: blood type assay + OBI:0003741: + text: OBI:0003741 + description: A mass spectrometry assay where a sample mixture is first separated + by capillary electrophoresis before being analysed by mass spectrometry. + meaning: OBI:0003741 + title: capillary electrophoresis mass spectrometry assay + OBI:0003750: + text: OBI:0003750 + description: A cell differentiation assay that detects neurite outgrowth and/or + branching + meaning: OBI:0003750 + title: neurite outgrowth assay + OBI:0003751: + text: OBI:0003751 + description: A cell differentiation assay that measures differentiation of + neurons. + meaning: OBI:0003751 + title: neuronal differentiation assay + OBI:0003752: + text: OBI:0003752 + description: A cell differentiation assay that measures differentiation of + oligodendrocytes. + meaning: OBI:0003752 + title: oligodendrocyte differentiation assay + OBI:0003753: + text: OBI:0003753 + description: A cell differentiation assay that measures synapse formation + and maturation using antibodies to protein found in synaptic puncta. + meaning: OBI:0003753 + title: regulation of synapse maturation assay + OBI:0003754: + text: OBI:0003754 + description: A cell based DNA damage assay that uses several constructed bacterial + strains to detect mutations. + meaning: OBI:0003754 + title: Ames assay + OBI:0003755: + text: OBI:0003755 + description: A cell based DNA damage assay in eukaryotic cells that detects + cytoplasmic micronuclei. + meaning: OBI:0003755 + title: micronucleus assay + OBI:0003756: + text: OBI:0003756 + description: A cell based DNA damage assay in eukaryotic cells that detects + loss of function through mutation of the X-linked (single-copy) Pig-a gene. + meaning: OBI:0003756 + title: PIG-a assay + OBI:0003757: + text: OBI:0003757 + description: A cell viability assay using the NAD(P)H-aided conversion of + resazurin to resorufin by metabolically active cells. + meaning: OBI:0003757 + title: cell viability assay based on detection of resorufin + OBI:0003758: + text: OBI:0003758 + description: A cell death assay that uses fluorescence imaging-based detection + of caspases involved in apoptosis + meaning: OBI:0003758 + title: cell death assay using caspase abundance to detect apoptosis + OBI:0003759: + text: OBI:0003759 + description: A cell viability assay which measures the number or proportion + of dead cells in a population. + meaning: OBI:0003759 + title: cell death assay + OBI:0003760: + text: OBI:0003760 + description: A cell viability assay based on detection of resorufin that uses + fluorescence to quantify resorufin + meaning: OBI:0003760 + title: cell viability assay based on detection of resorufin using fluorescence + to qualtify the presence of resorufin. + OBI:0003761: + text: OBI:0003761 + description: A cell death assay that measures the release of intracellular + LDH. + meaning: OBI:0003761 + title: cell death assay detecting lactate dehydrogenase (LDH) release + OBI:0003762: + text: OBI:0003762 + description: A cell death assay detecting lactate dehydrogenase (LDH) release + by absorbance of substrate + meaning: OBI:0003762 + title: cell death assay detecting lactate dehydrogenase (LDH) release using + absorbance detection. + OBI:0003763: + text: OBI:0003763 + description: A histological assay that measures the number of corpora lutea + (UBERON:0002512) in the ovary of an organism; corpora lutea develop from + the postovulatory follicle. + meaning: OBI:0003763 + title: ovulation assessment in rodent assay + OBI:0003764: + text: OBI:0003764 + description: An assay that performs a macroscopic assessment of a material + anatomical entity using the sense of sight. + meaning: OBI:0003764 + title: macroscopic examination of material anatomical entity assay + OBI:0003765: + text: OBI:0003765 + description: A macroscopic examination of material anatomical entity assay + performed on a post-mortem anatomical specimen. + meaning: OBI:0003765 + title: pathological macroscopic examination of specimen assay + OBI:0003766: + text: OBI:0003766 + description: A histological assay that evaluates cells in the vaginal endometrium + to assess the estrous cycle phase the subject was in at the time of specimen + collection. + meaning: OBI:0003766 + title: estrous cycle assay based on tissue morphology + OBI:0003767: + text: OBI:0003767 + description: An organism development assay performed with a late embryo stage + subject. + meaning: OBI:0003767 + title: organism development assay in late embryo + OBI:0003768: + text: OBI:0003768 + description: A histological assay that measures the number of implantation + sites in an organism. + meaning: OBI:0003768 + title: pregnancy assessment based on tissue morphology assay + OBI:0003769: + text: OBI:0003769 + description: A cell death assay that uses the Trypan blue vital dye to stain + cells which have lost membrane integrity. + meaning: OBI:0003769 + title: cell death assay using vital dye + OBI:0003770: + text: OBI:0003770 + description: A cytometry assay that uses a distance measurement assay to determine + the length of a neurite. + meaning: OBI:0003770 + title: neurite length assay + OBI:0003771: + text: OBI:0003771 + description: A cytometry assay that measures the degree of arborization, or + branching, in neuronal processes + meaning: OBI:0003771 + title: neurite degree of arborization assay + OBI:0003772: + text: OBI:0003772 + description: A cytometry assay that measures the number of neurites in a cultured + specimen. + meaning: OBI:0003772 + title: neurite count assay + OBI:0003773: + text: OBI:0003773 + description: A cytometry assay that measures the number of neurons in a sample + meaning: OBI:0003773 + title: neuron count assay + OBI:0003774: + text: OBI:0003774 + description: A regulation of synapse maturation assay that determines the + number of synaptic puncta in the cell body compartment of a neuron. + meaning: OBI:0003774 + title: cell-body-associated presynaptic puncta count assay + OBI:0003775: + text: OBI:0003775 + description: A regulation of synapse maturation assay that determines the + number of synaptic puncta in the dendritic compartment of a neuron. + meaning: OBI:0003775 + title: dendrite-associated presynaptic puncta count assay + OBI:0003776: + text: OBI:0003776 + description: A regulation of synapse maturation assay that determines the + number of synaptic puncta in a culture and normalizes it by the number of + neurons in the culture. + meaning: OBI:0003776 + title: synapse per neuron assay + OBI:0003777: + text: OBI:0003777 + description: An assay that measures the absorbance quality of the evaluant + meaning: OBI:0003777 + title: absorbance quality detection assay + OBI:0003778: + text: OBI:0003778 + description: The analyte assay that measures the abundance of a hormone in + a specimen. + meaning: OBI:0003778 + title: hormone assay + OBI:0003779: + text: OBI:0003779 + description: An analyte assay that detects a substance by measuring the release + of light triggered by a chemical reaction. + meaning: OBI:0003779 + title: chemiluminescent assay + OBI:0003780: + text: OBI:0003780 + description: A chemiluminescent assay that detects a substance by measuring + the release of light triggered by an electrochemical reaction. + meaning: OBI:0003780 + title: electrochemiluminescence assay + OBI:0003781: + text: OBI:0003781 + description: A mass spectrometry assay that identifies and measures proteins. + meaning: OBI:0003781 + title: proteomics by mass spectrometry assay + OBI:0003782: + text: OBI:0003782 + description: A mass spectrometry assay that identifies and measures metabolites. + meaning: OBI:0003782 + title: metabolomics by mass spectrometry assay + OBI:0003788: + text: OBI:0003788 + description: An assay performed on single cells that simultaneously measures + transcript expression via single-cell RNA sequencing and profiles surface + proteins via sequencing of DNA-barcodes attached to antibodies recognizing + particular surface proteins from individual cells. + meaning: OBI:0003788 + title: cellular indexing of transcriptomes and epitopes by sequencing + OBI:0003789: + text: OBI:0003789 + description: An assay that determines the sequence of a DNA or RNA molecules + that encode the repertoire of B cell receptors or T cell receptors within + an input sample. + meaning: OBI:0003789 + title: immune receptor repertoire profiling assay + OBI:0003790: + text: OBI:0003790 + description: An assay measuring antibody-dependent complement-dependent cytotoxicity. + meaning: OBI:0003790 + title: antibody-dependent complement deposition assay + OBI:0003791: + text: OBI:0003791 + description: An analyte assay measuring bacterial flagellin in a plasma sample. + meaning: OBI:0003791 + title: bacterial flagellin detection in plasma assay + OBI:0003792: + text: OBI:0003792 + description: An analyte assay measuring bacterial flagellin in a feces sample. + meaning: OBI:0003792 + title: bacterial flagellin detection in feces assay + OBI:0003793: + text: OBI:0003793 + description: An analyte assay measuring bacterial lipopolysaccharide in a + plasma sample. + meaning: OBI:0003793 + title: bacterial lipopolysaccharide detection in plasma assay + OBI:0003794: + text: OBI:0003794 + description: An analyte assay measuring bacterial lipopolysaccharide in a + feces sample. + meaning: OBI:0003794 + title: bacterial lipopolysaccharide detection in feces assay + OBI:0003795: + text: OBI:0003795 + description: An analyte assay measuring adenosine deaminase activity in a + sample. + meaning: OBI:0003795 + title: adenosine deaminase activity assay + OBI:0003796: + text: OBI:0003796 + description: An assay that measures neutralization of a pathogen. + meaning: OBI:0003796 + title: pathogen neutralization assay + OBI:0003797: + text: OBI:0003797 + description: A pathogen neutralization assay measuring neutralization of bacteria. + meaning: OBI:0003797 + title: bacterial neutralization assay + OBI:0003798: + text: OBI:0003798 + description: An analyte assay measuring the number of discrete viral plaques. + meaning: OBI:0003798 + title: viral plaque assay + OBI:0003799: + text: OBI:0003799 + description: An analyte assay that uses beads to measure the concentration + of an analyte with a flow cytometer. + meaning: OBI:0003799 + title: analyte detection by flow based bead assay + OBI:0003801: + text: OBI:0003801 + description: A histological assay with urine evaluant that measures opacity + of the urine + meaning: OBI:0003801 + title: urine opacity assay + OBI:0003802: + text: OBI:0003802 + description: A histological assay with urine evaluant that measures color. + meaning: OBI:0003802 + title: urine color assay + OBI:0003803: + text: OBI:0003803 + description: A histological assay with urine sediment as evaluant. + meaning: OBI:0003803 + title: urine histological assay + OBI:0003804: + text: OBI:0003804 + description: An assay that measures the color of the evaluant + meaning: OBI:0003804 + title: color detection assay + OBI:0003805: + text: OBI:0003805 + description: An assay that measures the opacity of the evaluant + meaning: OBI:0003805 + title: opacity determination assay + OBI:0003811: + text: OBI:0003811 + description: An estrous cycle assay based on tissue morphology that determines + the number of estrous cycles observed in a defined time. + meaning: OBI:0003811 + title: estrous cycle count assay + OBI:0003812: + text: OBI:0003812 + description: An estrous cycle assay based on tissue morphology that determines + the average length of a full estrous cycle observed in a defined time. + meaning: OBI:0003812 + title: estrous cycle duration assay + OBI:0003813: + text: OBI:0003813 + description: An organism development assay in late embryo that evaluates only + the external surface structure of the organism + meaning: OBI:0003813 + title: organism development assay in late embryo based on examination of surface + structure + OBI:0003814: + text: OBI:0003814 + description: An organism development assay in late embryo that evaluates the + skeletal system of the organism + meaning: OBI:0003814 + title: organism development assay in late embryo based on examination of skeletal + system + OBI:0003815: + text: OBI:0003815 + description: An organism development assay in late embryo that evaluates the + anatomical system of the organism + meaning: OBI:0003815 + title: organism development assay in late embryo based on examination of anatomical + system + OBI:0003816: + text: OBI:0003816 + description: An assay that measures the space between two entities. + meaning: OBI:0003816 + title: distance measurement assay + OBI:0003817: + text: OBI:0003817 + description: An assay that measures the distance between two points. + meaning: OBI:0003817 + title: length measurement assay + OBI:0003818: + text: OBI:0003818 + description: A length measurement assay that measures the length of a neonate + or fetus from crown of head to base of torso (rump) + meaning: OBI:0003818 + title: crown rump length + OBI:0003819: + text: OBI:0003819 + description: An assay that measures the distance traveled in a defined period + of time. + meaning: OBI:0003819 + title: path length assay + OBI:0003820: + text: OBI:0003820 + description: A distance measurement assay in which the migration of cells + in culture is monitored by measuring the distance between the start position + and the cell's location when observed. + meaning: OBI:0003820 + title: cell migration assay + OBI:0003821: + text: OBI:0003821 + description: A cell migration assay that measures migration of an oligodendrocyte + meaning: OBI:0003821 + title: oligodendrocyte migration assay + OBI:0003822: + text: OBI:0003822 + description: A cell migration assay that measures migration of a radial glia + cell + meaning: OBI:0003822 + title: radial glial migration assay + OBI:0003823: + text: OBI:0003823 + description: A cell migration assay that measures migration of a neuron + meaning: OBI:0003823 + title: neuron migration assay + OBI:0003824: + text: OBI:0003824 + description: A cell migration assay that measures migration of a neural crest + cell + meaning: OBI:0003824 + title: neural crest cell migration assay + OBI:0003825: + text: OBI:0003825 + description: An assay that measures the acidity of a specimen on the pH scale. + meaning: OBI:0003825 + title: acidity quality assay + OBI:0003826: + text: OBI:0003826 + description: An assay that measures the specific gravity of a sample. + meaning: OBI:0003826 + title: specific gravity assay + OBI:0003827: + text: OBI:0003827 + description: An assay to determine the speed of an evaluant. + meaning: OBI:0003827 + title: speed measurement assay + OBI:0003828: + text: OBI:0003828 + description: An assay to measure the velocity of an evaluant + meaning: OBI:0003828 + title: velocity measurement assay + OBI:0003829: + text: OBI:0003829 + description: An assay that measures the luminescence of the evaluant + meaning: OBI:0003829 + title: luminescence detection assay + OBI:0003830: + text: OBI:0003830 + description: A cell viability assay that uses an ATP bioluminescence assay + to detect ATP in the living cell + meaning: OBI:0003830 + title: cell viability assay using luciferase to detect ATP in the cell + OBI:0003831: + text: OBI:0003831 + description: An assay that measures the number of elements in a portion of + a population + meaning: OBI:0003831 + title: population count assay + OBI:0003832: + text: OBI:0003832 + description: A hematology assay that measures the fragility of red blood cells + by observing spillage of hemoglobin from burst cells. + meaning: OBI:0003832 + title: hemolysis assay + OBI:0003833: + text: OBI:0003833 + description: An electrophysiology assay that measures action potential events + in neurons during a time period. + meaning: OBI:0003833 + title: neuron action potential rate assay + OBI:0003834: + text: OBI:0003834 + description: An electrophysiology assay that measures the number of action + potential bursts in neurons during a time period. + meaning: OBI:0003834 + title: neuron burst rate assay + OBI:0003835: + text: OBI:0003835 + description: An electrophysiology assay that measures the elapsed time between + consecutive action potential bursts in neurons. + meaning: OBI:0003835 + title: neuron interburst interval assay + OBI:0003836: + text: OBI:0003836 + description: An electrophysiology assay that measures the time elapsed between + the first action potential in a neuron burst and the last in that burst. + meaning: OBI:0003836 + title: neuron burst duration assay + OBI:0003837: + text: OBI:0003837 + description: An electrophysiology assay that measures the time elapsed between + the peaks of consecutive action potential spikes in a neuron burst. + meaning: OBI:0003837 + title: action potential interval assay + OBI:0003838: + text: OBI:0003838 + description: An electrophysiology assay that measures the number of action + potential spikes occurring within a neuron burst + meaning: OBI:0003838 + title: rate of action potentials in neuron burst assay + OBI:0003839: + text: OBI:0003839 + description: A mass measurement assay with evaluant an individual organism. + meaning: OBI:0003839 + title: body mass assay + OBI:0003840: + text: OBI:0003840 + description: A body mass assay that measures the change in body mass for a + subject over a period of time. + meaning: OBI:0003840 + title: body mass change assay + OBI:0003841: + text: OBI:0003841 + description: A body weight assay with evaluant individual organism specimen + with quality dead. + meaning: OBI:0003841 + title: body weight assay at death + OBI:0003842: + text: OBI:0003842 + description: A mass measurement assay with evaluant tissue or bodily fluid + specimen. + meaning: OBI:0003842 + title: tissue mass assay + OBI:0003843: + text: OBI:0003843 + description: A mass measurement assay with evaluant tissue expressed as a + percentage of the body weight of the organism from which the specimen was + derived. + meaning: OBI:0003843 + title: tissue mass percent of body mass assay + OBI:0003844: + text: OBI:0003844 + description: An age determination assay which determines the age of the subject + at the time of the change from a state where it did not have a developmental + stage marker to one in which it does. + meaning: OBI:0003844 + title: developmental marker age of attainment assessment + OBI:0003850: + text: OBI:0003850 + description: A protein assay that measures the abundance of cytochrome P450 + in a specimen. + meaning: OBI:0003850 + title: cytochrome P450 assay + OBI:0003851: + text: OBI:0003851 + description: An analyte assay to measure the abundance of one or more growth + factors in a volume of sample. + meaning: OBI:0003851 + title: growth factor assay + OBI:0003852: + text: OBI:0003852 + description: A fluorescence imaging-based cell morphology assay that uses + Hoechst dye 33342 + meaning: OBI:0003852 + title: Hoechst dye assay + OBI:0003853: + text: OBI:0003853 + description: An immune response assay to assess the hypersensitivity response + in an organism or cell culture. + meaning: OBI:0003853 + title: hypersensitivity assay + OBI:0003882: + text: OBI:0003882 + description: A type of light microscopy assay where the images are taken with + a resolution higher than the diffraction limit. + meaning: OBI:0003882 + title: super-resolution microscopy assay + OBI:0003885: + text: OBI:0003885 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 1-methyl-7-nitroisatoic anhydride as reagent and + chemical probe + meaning: OBI:0003885 + title: 1M7 RNA structure mapping assay + OBI:0003886: + text: OBI:0003886 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 2-methylnicotinic acid imidazolide as reagent and + chemical probe + meaning: OBI:0003886 + title: NAI RNA structure mapping assay + OBI:0003887: + text: OBI:0003887 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 2-(azidomethyl)nicotinic acid imidazolide as reagent + and chemical probe + meaning: OBI:0003887 + title: NAI-N3 RNA structure mapping assay + OBI:0003888: + text: OBI:0003888 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 2-aminopyridine-3-carboxylic acid imidazolide as + reagent and chemical probe + meaning: OBI:0003888 + title: 2A3 RNA structure mapping assay + OBI:0003889: + text: OBI:0003889 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using indoline-5-carboxylic acid imidazolide as reagent + and chemical probe + meaning: OBI:0003889 + title: I5 RNA structure mapping assay + OBI:0003890: + text: OBI:0003890 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 1-methylimidazole-4-carboxylic acid imidazolide as + reagent and chemical probe + meaning: OBI:0003890 + title: 1M4 RNA structure mapping assay + OBI:0003891: + text: OBI:0003891 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 6-aminopyridine-3-carboxylic acid imidazolide as + reagent and chemical probe + meaning: OBI:0003891 + title: 6A3 RNA structure mapping assay + OBI:0003892: + text: OBI:0003892 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using benzotriazole-5-carboxylic acid imidazolide as reagent + and chemical probe + meaning: OBI:0003892 + title: B5 RNA structure mapping assay + OBI:0003893: + text: OBI:0003893 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using nicotinic acid imidazolide as reagent and chemical + probe + meaning: OBI:0003893 + title: NIC RNA structure mapping assay + OBI:0003894: + text: OBI:0003894 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using benzoyl cyanide as reagent and chemical probe + meaning: OBI:0003894 + title: BzCN RNA structure mapping assay + OBI:0003895: + text: OBI:0003895 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 1-methyl-6-nitroisatoic anhydride as reagent and + chemical probe + meaning: OBI:0003895 + title: 1M6 RNA structure mapping assay + OBI:0003896: + text: OBI:0003896 + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 5-nitroisatoic anhydride as reagent and chemical + probe + meaning: OBI:0003896 + title: 5NIA RNA structure mapping assay + OBI:0003897: + text: OBI:0003897 + description: An assay that measures the number of cells in a portion of a + cell culture or tissue or bodily fluid + meaning: OBI:0003897 + title: cell count assay + OBI:0003898: + text: OBI:0003898 + description: A hematology assay that measures the percentage of classes of + leukocytes in a sample. + meaning: OBI:0003898 + title: differential leukocyte count assay + OBI:0003899: + text: OBI:0003899 + description: An electrophysiology assay that measures heart activity using + electrodes placed to detect electrical signals from the heart. + meaning: OBI:0003899 + title: electrocardiogram assay + OBI:0003900: + text: OBI:0003900 + description: An assay which uses an implanted telemeter to measure physiological + data in a living organism and transmit the measures via radio waves to a + recording device. + meaning: OBI:0003900 + title: telemeter sensor detection assay + OBI:0003901: + text: OBI:0003901 + description: A multi-unit recording assay using a multi-electrode array (MEA) + on the surface of a well on a cell culture plate. + meaning: OBI:0003901 + title: multi-electrode array assay + OBI:0003902: + text: OBI:0003902 + description: An extracellular electrophysiology recording assay to measure + the integrity of a cell monolayer + meaning: OBI:0003902 + title: transepithelial / transendothelial electrical resistance (TEER) assay + OBI:0003903: + text: OBI:0003903 + description: A multi-electrode array assay that measures the number of electrodes + in a well where the mean rate of action potentials is at least 5 spikes + per minute. + meaning: OBI:0003903 + title: count of multi-electrode plate electrodes detecting action potential + assay + OBI:0003904: + text: OBI:0003904 + description: A multi-electrode array assay that measures the number of electrodes + in a well where the burst rate is at least 0.5 bursts per minute. + meaning: OBI:0003904 + title: count of multi-electrode plate electrodes detecting neuron burst assay + OBI:0003905: + text: OBI:0003905 + description: An multi-electrode assay that measures the number of events when + multiple electrodes simultaneously detect an action potential during a time + period. + meaning: OBI:0003905 + title: neural network spike rate assay + OBI:0003906: + text: OBI:0003906 + description: A multi-electrode assay that measures the mean duration of events + when multiple electrodes detect an action potential + meaning: OBI:0003906 + title: neural network spike duration assay + OBI:0003907: + text: OBI:0003907 + description: A multi-electrode array assay that measures the average number + of electrodes detecting a network spike, measured at the peak of a network + spike. + meaning: OBI:0003907 + title: count of multi-electrode plate electrodes detecting spike peak assay + OBI:0003908: + text: OBI:0003908 + description: A multi-electrode assay that measures the average interval between + network spikes, events where multiple electrodes simultaneously detect an + action potential. + meaning: OBI:0003908 + title: mean interspike interval in network spike + OBI:0003909: + text: OBI:0003909 + description: An analyte assay that measures the abundance of bile acid in + a volume of sample. + meaning: OBI:0003909 + title: bile acid concentration assay + OBI:0003910: + text: OBI:0003910 + description: An analyte assay that measures the abundance of urea nitrogen. + meaning: OBI:0003910 + title: urea nitrogen assay + OBI:0003911: + text: OBI:0003911 + description: A urea nitrogen assay that measures the abundance of urea nitrogen + in a specimen + meaning: OBI:0003911 + title: urea nitrogen concentration assay + OBI:0003912: + text: OBI:0003912 + description: An in vitro CRISPR screen assay that uses single-cell ATAC-Seq + to detect induced changes in chromatin accessibility + meaning: OBI:0003912 + title: in vitro CRISPR screen using single-cell ATAC-seq + OBI:0003913: + text: OBI:0003913 + description: A single-cell transcription profiling by RNA sequencing assay + in which mRNA transcripts are metabolically labeled with 4-thiouridine to + investigate temporal RNA dynamics. + meaning: OBI:0003913 + title: single-cell metabolically labeled new RNA tagging sequencing + OBI:0003914: + text: OBI:0003914 + description: A massively parallel reporter assay in which libraries of reporter + constructs are transfected into samples and then measured via single cell + transcriptomic methods to enable discovery of cell-specific transcriptional + regulatory activity + meaning: OBI:0003914 + title: single cell massively parallel reporter assay + OBI:0003915: + text: OBI:0003915 + description: A single-cell transcription profiling by RNA sequencing assay + that involves single cell combinatorial indexing ('sci-') to profile the + transcriptomes of single cells or nuclei in an ultra high-throughput manor + via changes to the method, as compared to sci-RNA-seq, that include extraction + of nuclei directly from fresh tissue, use of hairpin ligation for the third + level of indexing, optimization of enxymatic reactions, and use of dilution + instead of FACS sorting. + meaning: OBI:0003915 + title: ultra high throughput single-cell combinatorial indexing RNA sequencing + 3 assay + OBI:0302736: + text: OBI:0302736 + description: A cell based DNA damage assay that measures DNA damage (DNA breakage) + in eucaryotic cells exposed to a challenge by determining the size and shape + of DNA migration by detecting fluorescently labeled DNA from a cell placed + in an electric field using gel electrophoresis + meaning: OBI:0302736 + title: DNA damage comet assay + OBI:0302737: + text: OBI:0302737 + description: An assay that identifies DNA sequence variation (mutation, deletion, + insertions) in target DNA sequences amplified using polymerase chain reaction + using gel electrophoresis and denaturating conditions + meaning: OBI:0302737 + title: PCR-SSCP assay + OBI:0600002: + text: OBI:0600002 + description: An assay that determines the grade (severity/stage) of a tumor + sample, used in cancer biology to describe abnormalities/qualities of tumor + cells or tissues. Values can be described by terms from NCI Thesaurus. + meaning: OBI:0600002 + title: tumor grading + OBI:0600017: + text: OBI:0600017 + description: An assay that detects the presence or a quality of a molecular + label which is a proxy for the detection of the molecular target to which + the label is attached + meaning: OBI:0600017 + title: assay detecting a molecular label + OBI:0600020: + text: OBI:0600020 + description: An assay that uses visual examination of cells or tissue (or + images of them) to make an assessment regarding a quality of the cells or + tissue. This assay can include steps of staining, imaging, and judgement. + meaning: OBI:0600020 + title: histological assay + OBI:0600025: + text: OBI:0600025 + description: An assay that detects a specified substance + meaning: OBI:0600025 + title: substance detection assay + OBI:0600026: + text: OBI:0600026 + description: An assay that measures the mass of a material at two or more + time points + meaning: OBI:0600026 + title: longitudinal mass measurement assay + OBI:0600031: + text: OBI:0600031 + description: A cytometry assay in which cells are cultured on a surface coated + with a capture antibody binding a secretory material of interest which subsequently + gets stained resulting in a spot for each cell producing the secretory material + of interest. + meaning: OBI:0600031 + title: enzyme-linked immunospot assay + OBI:0600045: + text: OBI:0600045 + description: An assay that determines the 3-dimensional configuration of an + input material. + meaning: OBI:0600045 + title: 3D structure determination assay + OBI:0600047: + text: OBI:0600047 + description: An assay the uses chemical or biochemical means to infer the + sequence of a biomaterial + meaning: OBI:0600047 + title: sequencing assay + OBI:1110013: + text: OBI:1110013 + description: An enzyme-linked immunospot assay that detects interleukin-2 + production by T cells. + meaning: OBI:1110013 + title: ELISPOT assay measuring epitope specific interleukin-2 production by + T cells + OBI:1110037: + text: OBI:1110037 + description: A T cell epitope assay that measures the binding of T cell receptor + to an epitope. + meaning: OBI:1110037 + title: assay measuring binding of a T cell epitope:MHC:TCR complex + OBI:1110059: + text: OBI:1110059 + description: An enzyme-linked immunospot assay that detects interferon-gamma + production by T cells. + meaning: OBI:1110059 + title: ELISPOT assay measuring epitope specific interferon-gamma production + by T cells + OBI:1110124: + text: OBI:1110124 + description: An assay that detects the binding of a MHC:epitope complex with + a T cell receptor, and produces a qualitative measurement of the binding + as an output. + meaning: OBI:1110124 + title: assay measuring qualitative binding of a T cell epitope:MHC:TCR complex + OBI:1110125: + text: OBI:1110125 + description: A MHC ligand assay that determines what ligands are processed + and loaded onto MHC molecules by eluting ligands and identifying them. + meaning: OBI:1110125 + title: assay measuring MHC ligand processing and presentation + OBI:1110126: + text: OBI:1110126 + description: A MHC ligand assay that detects the binding of a ligand to an + MHC molecule. + meaning: OBI:1110126 + title: assay measuring binding of a MHC:ligand complex + OBI:1110127: + text: OBI:1110127 + description: A B cell epitope assay that measures the binding of an antibody + receptor to an epitope. + meaning: OBI:1110127 + title: assay measuring binding of a B cell epitope:antibody complex + OBI:1110128: + text: OBI:1110128 + description: An assay that detects the binding of an epitope to an adaptive + immune receptor, or an immune process resulting from such a binding event, + or characterizes the structrue of the complex resulting from such a binding + event. + meaning: OBI:1110128 + title: immune epitope assay + OBI:1110129: + text: OBI:1110129 + description: A T cell epitope assay that detects cytokine production by T + cells. + meaning: OBI:1110129 + title: assay measuring epitope specific cytokine production by T cells + OBI:1110130: + text: OBI:1110130 + description: A T cell epitope dependent biological activity assay that detects + the killing of an antigen presenting cell (APC) by a T cell whose TCR recognizes + an epitope presented by the APC. + meaning: OBI:1110130 + title: assay measuring epitope specific T cell killing + OBI:1110131: + text: OBI:1110131 + description: A T cell epitope dependent biological activity assay that detects + T cell proliferation. + meaning: OBI:1110131 + title: assay measuring epitope specific proliferation of T cells + OBI:1110150: + text: OBI:1110150 + description: A chromium release assay that detects the killing of an antigen + presenting cell (APC) by a T cell whose TCR recognizes an epitope presented + by the APC. + meaning: OBI:1110150 + title: 51 chromium assay measuring epitope specific T cell killing + OBI:1110151: + text: OBI:1110151 + description: An enzyme-linked immunosorbent assay that detects interferon-gamma + production by T cells. + meaning: OBI:1110151 + title: ELISA measuring epitope specific interferon-gamma production by T cells + OBI:1110152: + text: OBI:1110152 + description: An enzyme-linked immunosorbent assay that detects interleukin-2 + production by T cells. + meaning: OBI:1110152 + title: ELISA measuring epitope specific interleukin-2 production by T cells + OBI:1110153: + text: OBI:1110153 + description: An enzyme-linked immunosorbent assay that detects interleukin-4 + production by T cells. + meaning: OBI:1110153 + title: ELISA measuring epitope specific interleukin-4 production by T cells + OBI:1110154: + text: OBI:1110154 + description: An enzyme-linked immunosorbent assay that detects interleukin-5 + production by T cells. + meaning: OBI:1110154 + title: ELISA measuring epitope specific interleukin-5 production by T cells + OBI:1110155: + text: OBI:1110155 + description: An enzyme-linked immunosorbent assay that detects tumor necrosis + factor alpha production by T cells. + meaning: OBI:1110155 + title: ELISA measuring epitope specific tumor necrosis factor alpha production + by T cells + OBI:1110156: + text: OBI:1110156 + description: An enzyme-linked immunosorbent assay that detects interleukin-10 + production by T cells. + meaning: OBI:1110156 + title: ELISA measuring epitope specific interleukin-10 production by T cells + OBI:1110157: + text: OBI:1110157 + description: An enzyme-linked immunosorbent assay that detects granulocyte + macrophage colony stimulating factor production by T cells. + meaning: OBI:1110157 + title: ELISA measuring epitope specific granulocyte macrophage colony-stimulating + factor production by T cells + OBI:1110158: + text: OBI:1110158 + description: An enzyme-linked immunosorbent assay that detects interleukin-6 + production by T cells. + meaning: OBI:1110158 + title: ELISA measuring epitope specific interleukin-6 production by T cells + OBI:1110159: + text: OBI:1110159 + description: An enzyme-linked immunosorbent assay that detects interleukin-13 + production by T cells. + meaning: OBI:1110159 + title: ELISA measuring epitope specific interleukin-13 production by T cells + OBI:1110160: + text: OBI:1110160 + description: An enzyme-linked immunosorbent assay that detects interleukin-12 + production by T cells. + meaning: OBI:1110160 + title: ELISA measuring epitope specific interleukin-12 production by T cells + OBI:1110161: + text: OBI:1110161 + description: An enzyme-linked immunosorbent assay that detects interleukin-1 + beta production by T cells. + meaning: OBI:1110161 + title: ELISA measuring epitope specific interleukin-1 beta production by T + cells + OBI:1110162: + text: OBI:1110162 + description: An enzyme-linked immunosorbent assay that detects interleukin-17 + production by T cells. + meaning: OBI:1110162 + title: ELISA measuring epitope specific interleukin-17 production by T cells + OBI:1110163: + text: OBI:1110163 + description: An enzyme-linked immunosorbent assay that detects interleukin-18 + production by T cells. + meaning: OBI:1110163 + title: ELISA measuring epitope specific interleukin-18 production by T cells + OBI:1110167: + text: OBI:1110167 + description: An enzyme-linked immunospot assay that detects interleukin-4 + production by T cells. + meaning: OBI:1110167 + title: ELISPOT assay measuring epitope specific interleukin-4 production by + T cells + OBI:1110168: + text: OBI:1110168 + description: An enzyme-linked immunospot assay that detects tumor necrosis + factor alpha production by T cells + meaning: OBI:1110168 + title: ELISPOT assay measuring epitope specific tumor necrosis factor alpha + production by T cells + OBI:1110170: + text: OBI:1110170 + description: An enzyme-linked immunospot assay that detects interleukin-10 + production by T cells. + meaning: OBI:1110170 + title: ELISPOT assay measuring epitope specific interleukin-10 production + by T cells + OBI:1110171: + text: OBI:1110171 + description: An enzyme-linked immunospot assay that detects interleukin-13 + production by T cells. + meaning: OBI:1110171 + title: ELISPOT assay measuring epitope specific interleukin-13 production + by T cells + OBI:1110172: + text: OBI:1110172 + description: A flow cytometry assay that detects interferon-gamma production + by T cells. + meaning: OBI:1110172 + title: intracellular cytokine staining assay measuring epitope specific interferon-gamma + production by T cells + OBI:1110173: + text: OBI:1110173 + description: A flow cytometry assay that detects interleukin-2 production + by T cells. + meaning: OBI:1110173 + title: intracellular cytokine staining assay measuring epitope specific interleukin-2 + production by T cells + OBI:1110174: + text: OBI:1110174 + description: A flow cytometry assay that detects tumor necrosis factor alpha + production by T cells. + meaning: OBI:1110174 + title: intracellular cytokine staining assay measuring epitope specific tumor + necrosis factor alpha production by T cells + OBI:1110175: + text: OBI:1110175 + description: A flow cytometry assay that detects interleukin-4 production + by T cells. + meaning: OBI:1110175 + title: intracellular cytokine staining assay measuring epitope specific interleukin-4 + production by T cells + OBI:1110177: + text: OBI:1110177 + description: A flow cytometry assay that detects interleukin-10 production + by T cells. + meaning: OBI:1110177 + title: intracellular cytokine staining assay measuring epitope specific interleukin-10 + production by T cells + OBI:1110178: + text: OBI:1110178 + description: A flow cytometry assay that detects interleukin-17 production + by T cells. + meaning: OBI:1110178 + title: intracellular cytokine staining assay measuring epitope specific interleukin-17 + production by T cells + OBI:1110179: + text: OBI:1110179 + description: A MHC tetramer/multimer assay that measures the binding of an + epitope:MHC complex binding with a T cell receptor. + meaning: OBI:1110179 + title: MHC tetramer/multimer assay measuring binding of a T cell epitope:MHC:TCR + complex + OBI:1110180: + text: OBI:1110180 + description: A tritiated thymidine incorporation assay that detects T cell + epitope specific proliferation in vitro. + meaning: OBI:1110180 + title: 3H-thymidine assay measuring epitope specific proliferation of T cells + OBI:1110181: + text: OBI:1110181 + description: A BrdU incorporation assay that detects T cell epitope specific + proliferation in vitro. + meaning: OBI:1110181 + title: BrdU assay measuring epitope specific proliferation of T cells + OBI:1110207: + text: OBI:1110207 + description: An assay that determines information about the production of + the cytokine interferon gamma + meaning: OBI:1110207 + title: assay detecting IFN-gamma production + OBI:2100001: + text: OBI:2100001 + description: An analyte assay that measures the abundance of carbon dioxide + meaning: OBI:2100001 + title: carbon dioxide assay + OBI:2100002: + text: OBI:2100002 + description: An analyte assay that measures the abundance of sodium(1+) + meaning: OBI:2100002 + title: sodium(1+) assay + OBI:2100003: + text: OBI:2100003 + description: An analyte assay that measures the abundance of creatinine + meaning: OBI:2100003 + title: creatinine assay + OBI:2100004: + text: OBI:2100004 + description: An analyte assay that measures the abundance of potassium(1+) + meaning: OBI:2100004 + title: potassium(1+) assay + OBI:2100005: + text: OBI:2100005 + description: A cytometry assay that measures the count of basophils + meaning: OBI:2100005 + title: basophil count assay + OBI:2100006: + text: OBI:2100006 + description: A cytometry assay that measures the count of neutrophils + meaning: OBI:2100006 + title: neutrophil count assay + OBI:2100007: + text: OBI:2100007 + description: A cytometry assay that measures the count of eosinophils + meaning: OBI:2100007 + title: eosinophil count assay + OBI:2100008: + text: OBI:2100008 + description: A cytometry assay that measures the count of lymphocytes + meaning: OBI:2100008 + title: lymphocyte count assay + OBI:2100009: + text: OBI:2100009 + description: A cytometry assay that measures the count of monocytes + meaning: OBI:2100009 + title: monocyte count assay + OBI:2100010: + text: OBI:2100010 + description: An analyte assay that measures the abundance of chloride + meaning: OBI:2100010 + title: chloride assay + OBI:2100011: + text: OBI:2100011 + description: A cytometry assay that measures the count of erythrocytes + meaning: OBI:2100011 + title: erythrocyte count assay + OBI:2100012: + text: OBI:2100012 + description: A cytometry assay that measures the count of platelets + meaning: OBI:2100012 + title: platelet count assay + OBI:2100013: + text: OBI:2100013 + description: A cytometry assay that measures the count of leukocytes + meaning: OBI:2100013 + title: leukocyte count assay + OBI:2100014: + text: OBI:2100014 + description: An analyte assay that measures the abundance of hemoglobin + meaning: OBI:2100014 + title: hemoglobin assay + OBI:2100015: + text: OBI:2100015 + description: An analyte assay that measures the abundance of phosphate ion + meaning: OBI:2100015 + title: phosphate ion assay + OBI:2100016: + text: OBI:2100016 + description: An analyte assay that measures the abundance of alanine aminotransferase + meaning: OBI:2100016 + title: alanine aminotransferase assay + OBI:2100017: + text: OBI:2100017 + description: An analyte assay that measures the abundance of alkaline phosphatase + (human) + meaning: OBI:2100017 + title: alkaline phosphatase (human) assay + OBI:2100018: + text: OBI:2100018 + description: An analyte assay that measures the abundance of bilirubin IXalpha + meaning: OBI:2100018 + title: bilirubin IXalpha assay + OBI:2100019: + text: OBI:2100019 + description: An analyte assay that measures the abundance of aspartate aminotransferase + (human) + meaning: OBI:2100019 + title: aspartate aminotransferase (human) assay + OBI:2100020: + text: OBI:2100020 + description: An analyte assay that measures the abundance of glucose + meaning: OBI:2100020 + title: glucose assay + OBI:2100021: + text: OBI:2100021 + description: An analyte assay that measures the abundance of magnesium cation + meaning: OBI:2100021 + title: magnesium cation assay + OBI:2100022: + text: OBI:2100022 + description: An analyte assay that measures the abundance of albumin + meaning: OBI:2100022 + title: albumin assay + OBI:2100023: + text: OBI:2100023 + description: An analyte assay that measures the abundance of protein + meaning: OBI:2100023 + title: protein assay + OBI:2100024: + text: OBI:2100024 + description: An analyte assay that measures the abundance of calcium cation + meaning: OBI:2100024 + title: calcium cation assay + OBI:2100025: + text: OBI:2100025 + description: An analyte assay that measures the abundance of creatine kinase + meaning: OBI:2100025 + title: creatine kinase assay + OBI:2100026: + text: OBI:2100026 + description: A cytometry assay that measures the count of nucleate erythrocytes + meaning: OBI:2100026 + title: nucleate erythrocyte count assay + OBI:2100027: + text: OBI:2100027 + description: A cytometry assay that measures the count of segmented neutrophil + of bone marrows + meaning: OBI:2100027 + title: segmented neutrophil of bone marrow count assay + OBI:2100028: + text: OBI:2100028 + description: An assay that measures lactate dehydrogenase complex + meaning: OBI:2100028 + title: lactate dehydrogenase complex assay + OBI:2100029: + text: OBI:2100029 + description: An analyte assay that measures the abundance of triglyceride + meaning: OBI:2100029 + title: triglyceride assay + OBI:2100030: + text: OBI:2100030 + description: An analyte assay that measures the abundance of high-density + lipoprotein cholesterol + meaning: OBI:2100030 + title: high-density lipoprotein cholesterol assay + OBI:2100031: + text: OBI:2100031 + description: An analyte assay that measures the abundance of cholesterol + meaning: OBI:2100031 + title: cholesterol assay + OBI:2100032: + text: OBI:2100032 + description: An analyte assay that measures the abundance of low-density lipoprotein + cholesterol + meaning: OBI:2100032 + title: low-density lipoprotein cholesterol assay + OBI:2100033: + text: OBI:2100033 + description: An analyte assay that measures the abundance of thyroid stimulating + hormone + meaning: OBI:2100033 + title: thyroid stimulating hormone assay + OBI:2100034: + text: OBI:2100034 + description: An analyte assay that measures the abundance of prostate-specific + antigen + meaning: OBI:2100034 + title: prostate-specific antigen assay + OBI:2100035: + text: OBI:2100035 + description: An analyte assay that measures the abundance of thyroxine + meaning: OBI:2100035 + title: thyroxine assay + OBI:2100036: + text: OBI:2100036 + description: An analyte assay that measures the abundance of elemental oxygen + meaning: OBI:2100036 + title: elemental oxygen assay + OBI:2100037: + text: OBI:2100037 + description: An analyte assay that measures the abundance of folic acids + meaning: OBI:2100037 + title: folic acids assay + OBI:2100038: + text: OBI:2100038 + description: A cytometry assay that measures the count of reticulocytes + meaning: OBI:2100038 + title: reticulocyte count assay + OBI:2100039: + text: OBI:2100039 + description: An assay that measures osmolality + meaning: OBI:2100039 + title: osmolality assay + OBI:2100040: + text: OBI:2100040 + description: An analyte assay that measures the abundance of methemoglobin + meaning: OBI:2100040 + title: methemoglobin assay + OBI:2100041: + text: OBI:2100041 + description: An assay that measures cytosolic creatine kinase complex, MB-type + meaning: OBI:2100041 + title: cytosolic creatine kinase complex, MB-type assay + OBI:2100042: + text: OBI:2100042 + description: An assay that measures rac-lactic acid + meaning: OBI:2100042 + title: rac-lactic acid assay + OBI:2100043: + text: OBI:2100043 + description: An analyte assay that measures the abundance of hydrogencarbonate + meaning: OBI:2100043 + title: hydrogencarbonate assay + OBI:2100044: + text: OBI:2100044 + description: An analyte assay that measures the abundance of vancomycin + meaning: OBI:2100044 + title: vancomycin assay + OBI:2100045: + text: OBI:2100045 + description: An analyte assay that measures the abundance of tobramycin + meaning: OBI:2100045 + title: tobramycin assay + OBI:2100046: + text: OBI:2100046 + description: An analyte assay that measures the abundance of 3,3',5'-triiodothyronine + meaning: OBI:2100046 + title: 3,3',5'-triiodothyronine assay + OBI:2100047: + text: OBI:2100047 + description: An analyte assay that measures the abundance of C-reactive protein + meaning: OBI:2100047 + title: C-reactive protein assay + OBI:2100048: + text: OBI:2100048 + description: A cytometry assay that measures the count of megakaryocytes + meaning: OBI:2100048 + title: megakaryocyte count assay + OBI:2100049: + text: OBI:2100049 + description: A cytometry assay that measures the count of mesothelial cells + meaning: OBI:2100049 + title: mesothelial cell count assay + OBI:2100050: + text: OBI:2100050 + description: A cytometry assay that measures the count of macrophages + meaning: OBI:2100050 + title: macrophage count assay + OBI:2100051: + text: OBI:2100051 + description: An analyte assay that measures the abundance of 3-hydroxybutyric + acid + meaning: OBI:2100051 + title: 3-hydroxybutyric acid assay + OBI:2100052: + text: OBI:2100052 + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a panel5 order + meaning: OBI:2100052 + title: panel5 venous blood carbon dioxide assay + OBI:2100053: + text: OBI:2100053 + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a panel5 order + meaning: OBI:2100053 + title: panel5 venous blood sodium assay + OBI:2100054: + text: OBI:2100054 + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a panel5 order + meaning: OBI:2100054 + title: panel5 venous blood creatinine assay + OBI:2100055: + text: OBI:2100055 + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a panel5 order + meaning: OBI:2100055 + title: panel5 venous blood potassium assay + OBI:2100056: + text: OBI:2100056 + description: A cytometry assay that measures the count of basophils in venous + blood as part of a automated differential order + meaning: OBI:2100056 + title: automated differential venous blood basophil count assay + OBI:2100057: + text: OBI:2100057 + description: A cytometry assay that measures the count of neutrophils in venous + blood as part of a automated differential order + meaning: OBI:2100057 + title: automated differential venous blood neutrophil count assay + OBI:2100058: + text: OBI:2100058 + description: A cytometry assay that measures the count of eosinophils in venous + blood as part of a automated differential order + meaning: OBI:2100058 + title: automated differential venous blood eosinophil count assay + OBI:2100059: + text: OBI:2100059 + description: A cytometry assay that measures the count of lymphocytes in venous + blood as part of a automated differential order + meaning: OBI:2100059 + title: automated differential venous blood lymphocyte count assay + OBI:2100060: + text: OBI:2100060 + description: A cytometry assay that measures the count of monocytes in venous + blood as part of a automated differential order + meaning: OBI:2100060 + title: automated differential venous blood monocyte count assay + OBI:2100061: + text: OBI:2100061 + description: An analyte assay that measures the abundance of chloride in venous + blood + meaning: OBI:2100061 + title: venous blood chloride assay + OBI:2100062: + text: OBI:2100062 + description: A cytometry assay that measures the count of RBCs in venous blood + as part of a CBC with automated differential order + meaning: OBI:2100062 + title: CBC with automated differential venous blood RBC count assay + OBI:2100063: + text: OBI:2100063 + description: A cytometry assay that measures the count of platelets in venous + blood as part of a CBC with automated differential order + meaning: OBI:2100063 + title: CBC with automated differential venous blood platelet count assay + OBI:2100064: + text: OBI:2100064 + description: A cytometry assay that measures the count of WBCs in venous blood + as part of a CBC with automated differential order + meaning: OBI:2100064 + title: CBC with automated differential venous blood WBC count assay + OBI:2100065: + text: OBI:2100065 + description: A cytometry assay that measures the proportion of red blood cells + in venous blood as part of a CBC with automated differential order + meaning: OBI:2100065 + title: CBC with automated differential venous blood hematocrit assay + OBI:2100066: + text: OBI:2100066 + description: An analyte assay that measures the abundance of hemoglobin in + venous blood as part of a CBC with automated differential order + meaning: OBI:2100066 + title: CBC with automated differential venous blood hemoglobin assay + OBI:2100067: + text: OBI:2100067 + description: An analyte assay that measures the abundance of phosphate in + venous blood + meaning: OBI:2100067 + title: venous blood phosphate assay + OBI:2100068: + text: OBI:2100068 + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a liver injury order + meaning: OBI:2100068 + title: liver injury venous blood alanine aminotransferase assay + OBI:2100069: + text: OBI:2100069 + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a liver injury order + meaning: OBI:2100069 + title: liver injury venous blood human alkaline phosphatase assay + OBI:2100070: + text: OBI:2100070 + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a liver injury order + meaning: OBI:2100070 + title: liver injury venous blood bilirubin assay + OBI:2100071: + text: OBI:2100071 + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a liver injury order + meaning: OBI:2100071 + title: liver injury venous blood human aspartate aminotransferase assay + OBI:2100072: + text: OBI:2100072 + description: An analyte assay that measures the abundance of glucose in venous + blood + meaning: OBI:2100072 + title: venous blood glucose assay + OBI:2100073: + text: OBI:2100073 + description: An analyte assay that measures the abundance of magnesium in + venous blood + meaning: OBI:2100073 + title: venous blood magnesium assay + OBI:2100074: + text: OBI:2100074 + description: A cytometry assay that measures the count of RBCs in venous blood + as part of a CBC order + meaning: OBI:2100074 + title: CBC venous blood RBC count assay + OBI:2100075: + text: OBI:2100075 + description: A cytometry assay that measures the count of WBCs in venous blood + as part of a CBC order + meaning: OBI:2100075 + title: CBC venous blood WBC count assay + OBI:2100076: + text: OBI:2100076 + description: A cytometry assay that measures the proportion of red blood cells + in venous blood as part of a CBC order + meaning: OBI:2100076 + title: CBC venous blood hematocrit assay + OBI:2100077: + text: OBI:2100077 + description: A cytometry assay that measures the count of platelets in venous + blood as part of a CBC order + meaning: OBI:2100077 + title: CBC venous blood platelet count assay + OBI:2100078: + text: OBI:2100078 + description: An analyte assay that measures the abundance of hemoglobin in + venous blood as part of a CBC order + meaning: OBI:2100078 + title: CBC venous blood hemoglobin assay + OBI:2100079: + text: OBI:2100079 + description: A cytometry assay that measures the count of leukocytes in venous + blood as part of a corrected order + meaning: OBI:2100079 + title: corrected venous blood leukocyte count assay + OBI:2100080: + text: OBI:2100080 + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a liver evaluation order + meaning: OBI:2100080 + title: liver evaluation venous blood bilirubin assay + OBI:2100081: + text: OBI:2100081 + description: An analyte assay that measures the abundance of globulin in venous + blood as part of a liver evaluation order + meaning: OBI:2100081 + title: liver evaluation venous blood globulin assay + OBI:2100082: + text: OBI:2100082 + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a liver evaluation order + meaning: OBI:2100082 + title: liver evaluation venous blood albumin assay + OBI:2100083: + text: OBI:2100083 + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a liver evaluation order + meaning: OBI:2100083 + title: liver evaluation venous blood human aspartate aminotransferase assay + OBI:2100084: + text: OBI:2100084 + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a liver evaluation order + meaning: OBI:2100084 + title: liver evaluation venous blood alanine aminotransferase assay + OBI:2100085: + text: OBI:2100085 + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a liver evaluation order + meaning: OBI:2100085 + title: liver evaluation venous blood human alkaline phosphatase assay + OBI:2100086: + text: OBI:2100086 + description: An analyte assay that measures the abundance of protein in venous + blood as part of a liver evaluation order + meaning: OBI:2100086 + title: liver evaluation venous blood protein assay + OBI:2100087: + text: OBI:2100087 + description: An analyte assay that measures the abundance of chloride in venous + blood as part of a basic metabolic panel order + meaning: OBI:2100087 + title: basic metabolic panel venous blood chloride assay + OBI:2100088: + text: OBI:2100088 + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a basic metabolic panel order + meaning: OBI:2100088 + title: basic metabolic panel venous blood potassium assay + OBI:2100089: + text: OBI:2100089 + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a basic metabolic panel order + meaning: OBI:2100089 + title: basic metabolic panel venous blood sodium assay + OBI:2100090: + text: OBI:2100090 + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a basic metabolic panel order + meaning: OBI:2100090 + title: basic metabolic panel venous blood creatinine assay + OBI:2100091: + text: OBI:2100091 + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a basic metabolic panel order + meaning: OBI:2100091 + title: basic metabolic panel venous blood glucose assay + OBI:2100092: + text: OBI:2100092 + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a basic metabolic panel order + meaning: OBI:2100092 + title: basic metabolic panel venous blood calcium assay + OBI:2100093: + text: OBI:2100093 + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a basic metabolic panel order + meaning: OBI:2100093 + title: basic metabolic panel venous blood carbon dioxide assay + OBI:2100094: + text: OBI:2100094 + description: An analyte assay that measures the abundance of creatine kinase + in venous blood + meaning: OBI:2100094 + title: venous blood creatine kinase assay + OBI:2100095: + text: OBI:2100095 + description: An analyte assay that measures the abundance of calcium in venous + blood + meaning: OBI:2100095 + title: venous blood calcium assay + OBI:2100096: + text: OBI:2100096 + description: An assay that measures ferritin in venous blood + meaning: OBI:2100096 + title: venous blood ferritin assay + OBI:2100097: + text: OBI:2100097 + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a total order + meaning: OBI:2100097 + title: total venous blood calcium assay + OBI:2100098: + text: OBI:2100098 + description: An analyte assay that measures the abundance of iron in venous + blood + meaning: OBI:2100098 + title: venous blood iron assay + OBI:2100099: + text: OBI:2100099 + description: A cytometry assay that measures the count of band neutrophils + in venous blood as part of a CBC with manual differential order + meaning: OBI:2100099 + title: CBC with manual differential venous blood band neutrophil count assay + OBI:2100100: + text: OBI:2100100 + description: A cytometry assay that measures the count of WBCs in venous blood + as part of a CBC with manual differential order + meaning: OBI:2100100 + title: CBC with manual differential venous blood WBC count assay + OBI:2100101: + text: OBI:2100101 + description: A cytometry assay that measures the count of eosinophils in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100101 + title: CBC with manual differential venous blood eosinophil count assay + OBI:2100102: + text: OBI:2100102 + description: A cytometry assay that measures the count of lymphocytes in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100102 + title: CBC with manual differential venous blood lymphocyte count assay + OBI:2100103: + text: OBI:2100103 + description: A cytometry assay that measures the count of nucleated RBCs in + venous blood as part of a CBC with manual differential order + meaning: OBI:2100103 + title: CBC with manual differential venous blood nucleated RBC count assay + OBI:2100104: + text: OBI:2100104 + description: A cytometry assay that measures the count of monocytes in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100104 + title: CBC with manual differential venous blood monocyte count assay + OBI:2100105: + text: OBI:2100105 + description: A cytometry assay that measures the count of segmented neutrophils + in venous blood as part of a CBC with manual differential order + meaning: OBI:2100105 + title: CBC with manual differential venous blood segmented neutrophil count + assay + OBI:2100106: + text: OBI:2100106 + description: A cytometry assay that measures the count of basophils in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100106 + title: CBC with manual differential venous blood basophil count assay + OBI:2100107: + text: OBI:2100107 + description: An analyte assay that measures the abundance of albumin in venous + blood + meaning: OBI:2100107 + title: venous blood albumin assay + OBI:2100108: + text: OBI:2100108 + description: An analyte assay that measures the abundance of creatine kinase + in venous blood as part of a cardiac enzymes order + meaning: OBI:2100108 + title: cardiac enzymes venous blood creatine kinase assay + OBI:2100109: + text: OBI:2100109 + description: An analyte assay that measures the abundance of haptoglobin in + venous blood + meaning: OBI:2100109 + title: venous blood haptoglobin assay + OBI:2100110: + text: OBI:2100110 + description: An assay that measures lactate dehydrogenase in venous blood + meaning: OBI:2100110 + title: venous blood lactate dehydrogenase assay + OBI:2100111: + text: OBI:2100111 + description: An analyte assay that measures the abundance of prealbunin in + venous blood + meaning: OBI:2100111 + title: venous blood prealbunin assay + OBI:2100112: + text: OBI:2100112 + description: An analyte assay that measures the abundance of triglyceride + in venous blood as part of a lipid panel order + meaning: OBI:2100112 + title: lipid panel venous blood triglyceride assay + OBI:2100113: + text: OBI:2100113 + description: An analyte assay that measures the abundance of high density + lipoprotein in venous blood as part of a lipid panel order + meaning: OBI:2100113 + title: lipid panel venous blood high density lipoprotein assay + OBI:2100114: + text: OBI:2100114 + description: An analyte assay that measures the abundance of cholesterol in + venous blood as part of a lipid panel order + meaning: OBI:2100114 + title: lipid panel venous blood cholesterol assay + OBI:2100115: + text: OBI:2100115 + description: An analyte assay that measures the abundance of low density lipoprotein + in venous blood as part of a lipid panel order + meaning: OBI:2100115 + title: lipid panel venous blood low density lipoprotein assay + OBI:2100116: + text: OBI:2100116 + description: An assay that measures hemoglobin A1c in venous blood + meaning: OBI:2100116 + title: venous blood hemoglobin A1c assay + OBI:2100117: + text: OBI:2100117 + description: An analyte assay that measures the abundance of uric acid in + venous blood + meaning: OBI:2100117 + title: venous blood uric acid assay + OBI:2100118: + text: OBI:2100118 + description: An analyte assay that measures the abundance of protein in venous + blood as part of a total order + meaning: OBI:2100118 + title: total venous blood protein assay + OBI:2100119: + text: OBI:2100119 + description: An analyte assay that measures the abundance of thyroid stimulating + hormone in venous blood + meaning: OBI:2100119 + title: venous blood thyroid stimulating hormone assay + OBI:2100120: + text: OBI:2100120 + description: An analyte assay that measures the abundance of prostate specific + antigen in venous blood + meaning: OBI:2100120 + title: venous blood prostate specific antigen assay + OBI:2100121: + text: OBI:2100121 + description: An assay that measures volume in urine as part of a 24 hour total + order + meaning: OBI:2100121 + title: 24 hour total urine volume assay + OBI:2100122: + text: OBI:2100122 + description: An analyte assay that measures the abundance of T4 in venous + blood as part of a T4 uptake order + meaning: OBI:2100122 + title: T4 uptake venous blood T4 assay + OBI:2100123: + text: OBI:2100123 + description: An analyte assay that measures the abundance of glucose in arterial + blood + meaning: OBI:2100123 + title: arterial blood glucose assay + OBI:2100124: + text: OBI:2100124 + description: A cytometry assay that measures the count of cells in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100124 + title: CBC with manual differential venous blood cell count assay + OBI:2100125: + text: OBI:2100125 + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a hemoglobin oxygen saturation order + meaning: OBI:2100125 + title: hemoglobin oxygen saturation arterial blood oxygen assay + OBI:2100126: + text: OBI:2100126 + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood as part of a hemoglobin oxygen saturation order + meaning: OBI:2100126 + title: hemoglobin oxygen saturation arterial blood hemoglobin assay + OBI:2100127: + text: OBI:2100127 + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a inpatient profile order + meaning: OBI:2100127 + title: inpatient profile venous blood sodium assay + OBI:2100128: + text: OBI:2100128 + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a inpatient profile order + meaning: OBI:2100128 + title: inpatient profile venous blood creatinine assay + OBI:2100129: + text: OBI:2100129 + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a inpatient profile order + meaning: OBI:2100129 + title: inpatient profile venous blood potassium assay + OBI:2100130: + text: OBI:2100130 + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a inpatient profile order + meaning: OBI:2100130 + title: inpatient profile venous blood carbon dioxide assay + OBI:2100131: + text: OBI:2100131 + description: An analyte assay that measures the abundance of folic acid in + venous blood + meaning: OBI:2100131 + title: venous blood folic acid assay + OBI:2100132: + text: OBI:2100132 + description: A cytometry assay that measures the count of reticulocytes in + venous blood as part of a count order + meaning: OBI:2100132 + title: count venous blood reticulocyte count assay + OBI:2100133: + text: OBI:2100133 + description: An analyte assay that measures the abundance of potassium in + venous blood + meaning: OBI:2100133 + title: venous blood potassium assay + OBI:2100134: + text: OBI:2100134 + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood + meaning: OBI:2100134 + title: venous blood carbon dioxide assay + OBI:2100135: + text: OBI:2100135 + description: An analyte assay that measures the abundance of transferrin in + venous blood + meaning: OBI:2100135 + title: venous blood transferrin assay + OBI:2100136: + text: OBI:2100136 + description: An analyte assay that measures the abundance of sodium in venous + blood + meaning: OBI:2100136 + title: venous blood sodium assay + OBI:2100137: + text: OBI:2100137 + description: An analyte assay that measures the abundance of sodium in urine + as part of a random electrolytes order + meaning: OBI:2100137 + title: random electrolytes urine sodium assay + OBI:2100138: + text: OBI:2100138 + description: An analyte assay that measures the abundance of potassium in + urine as part of a random electrolytes order + meaning: OBI:2100138 + title: random electrolytes urine potassium assay + OBI:2100139: + text: OBI:2100139 + description: An analyte assay that measures the abundance of creatinine in + urine + meaning: OBI:2100139 + title: urine creatinine assay + OBI:2100140: + text: OBI:2100140 + description: An assay that measures osmolality in urine + meaning: OBI:2100140 + title: urine osmolality assay + OBI:2100141: + text: OBI:2100141 + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a cooximitery order + meaning: OBI:2100141 + title: cooximitery arterial blood oxygen assay + OBI:2100142: + text: OBI:2100142 + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood as part of a cooximitery order + meaning: OBI:2100142 + title: cooximitery arterial blood hemoglobin assay + OBI:2100143: + text: OBI:2100143 + description: An analyte assay that measures the abundance of methemoglobin + in arterial blood as part of a cooximitery order + meaning: OBI:2100143 + title: cooximitery arterial blood methemoglobin assay + OBI:2100144: + text: OBI:2100144 + description: An analyte assay that measures the abundance of sodium in urine + as part of a electrolytes order + meaning: OBI:2100144 + title: electrolytes urine sodium assay + OBI:2100145: + text: OBI:2100145 + description: An analyte assay that measures the abundance of potassium in + urine as part of a electrolytes order + meaning: OBI:2100145 + title: electrolytes urine potassium assay + OBI:2100146: + text: OBI:2100146 + description: An assay that measures creatine kinase MB in arterial blood as + part of a Biosite cardiac panel order + meaning: OBI:2100146 + title: Biosite cardiac panel arterial blood creatine kinase MB assay + OBI:2100147: + text: OBI:2100147 + description: An assay that measures fibrinogen in venous blood + meaning: OBI:2100147 + title: venous blood fibrinogen assay + OBI:2100148: + text: OBI:2100148 + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100148 + title: comprehensive metabolic panel venous blood carbon dioxide assay + OBI:2100149: + text: OBI:2100149 + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100149 + title: comprehensive metabolic panel venous blood calcium assay + OBI:2100150: + text: OBI:2100150 + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100150 + title: comprehensive metabolic panel venous blood potassium assay + OBI:2100151: + text: OBI:2100151 + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100151 + title: comprehensive metabolic panel venous blood sodium assay + OBI:2100152: + text: OBI:2100152 + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100152 + title: comprehensive metabolic panel venous blood glucose assay + OBI:2100153: + text: OBI:2100153 + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100153 + title: comprehensive metabolic panel venous blood albumin assay + OBI:2100154: + text: OBI:2100154 + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100154 + title: comprehensive metabolic panel venous blood human alkaline phosphatase + assay + OBI:2100155: + text: OBI:2100155 + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100155 + title: comprehensive metabolic panel venous blood bilirubin assay + OBI:2100156: + text: OBI:2100156 + description: An analyte assay that measures the abundance of chloride in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100156 + title: comprehensive metabolic panel venous blood chloride assay + OBI:2100157: + text: OBI:2100157 + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a comprehensive metabolic panel + order + meaning: OBI:2100157 + title: comprehensive metabolic panel venous blood human aspartate aminotransferase + assay + OBI:2100158: + text: OBI:2100158 + description: An analyte assay that measures the abundance of protein in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100158 + title: comprehensive metabolic panel venous blood protein assay + OBI:2100159: + text: OBI:2100159 + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100159 + title: comprehensive metabolic panel venous blood creatinine assay + OBI:2100160: + text: OBI:2100160 + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100160 + title: comprehensive metabolic panel venous blood alanine aminotransferase + assay + OBI:2100161: + text: OBI:2100161 + description: An assay that measures LDH in venous blood + meaning: OBI:2100161 + title: venous blood LDH assay + OBI:2100162: + text: OBI:2100162 + description: An assay that measures creatine kinase MB in venous blood + meaning: OBI:2100162 + title: venous blood creatine kinase MB assay + OBI:2100163: + text: OBI:2100163 + description: An assay that measures lactic acid in venous blood + meaning: OBI:2100163 + title: venous blood lactic acid assay + OBI:2100164: + text: OBI:2100164 + description: A cytometry assay that measures the proportion of red blood cells + in venous blood + meaning: OBI:2100164 + title: venous blood hematocrit assay + OBI:2100165: + text: OBI:2100165 + description: An analyte assay that measures the abundance of creatinine in + venous blood + meaning: OBI:2100165 + title: venous blood creatinine assay + OBI:2100166: + text: OBI:2100166 + description: An analyte assay that measures the abundance of oxygen in venous + blood as part of a blood gas order + meaning: OBI:2100166 + title: blood gas venous blood oxygen assay + OBI:2100167: + text: OBI:2100167 + description: An analyte assay that measures the abundance of ionized calcium + in venous blood as part of a ionized order + meaning: OBI:2100167 + title: ionized venous blood ionized calcium assay + OBI:2100168: + text: OBI:2100168 + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a blood gas order + meaning: OBI:2100168 + title: blood gas venous blood carbon dioxide assay + OBI:2100169: + text: OBI:2100169 + description: An analyte assay that measures the abundance of bicarbonate in + venous blood as part of a blood gas order + meaning: OBI:2100169 + title: blood gas venous blood bicarbonate assay + OBI:2100170: + text: OBI:2100170 + description: An analyte assay that measures the abundance of creatinine in + arterial blood + meaning: OBI:2100170 + title: arterial blood creatinine assay + OBI:2100171: + text: OBI:2100171 + description: An analyte assay that measures the abundance of tacrolimus in + venous blood + meaning: OBI:2100171 + title: venous blood tacrolimus assay + OBI:2100172: + text: OBI:2100172 + description: An analyte assay that measures the abundance of vancomycin in + venous blood as part of a random order + meaning: OBI:2100172 + title: random venous blood vancomycin assay + OBI:2100173: + text: OBI:2100173 + description: An analyte assay that measures the abundance of mycophenolic + acid in venous blood + meaning: OBI:2100173 + title: venous blood mycophenolic acid assay + OBI:2100174: + text: OBI:2100174 + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a non-vented blood gas order + meaning: OBI:2100174 + title: non-vented blood gas arterial blood carbon dioxide assay + OBI:2100175: + text: OBI:2100175 + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a non-vented blood gas order + meaning: OBI:2100175 + title: non-vented blood gas arterial blood oxygen assay + OBI:2100176: + text: OBI:2100176 + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a non-vented blood gas order + meaning: OBI:2100176 + title: non-vented blood gas arterial blood bicarbonate assay + OBI:2100177: + text: OBI:2100177 + description: An assay that measures IgG in venous blood as part of a quantitative + order + meaning: OBI:2100177 + title: quantitative venous blood IgG assay + OBI:2100178: + text: OBI:2100178 + description: An assay that measures IgM in venous blood as part of a quantitative + order + meaning: OBI:2100178 + title: quantitative venous blood IgM assay + OBI:2100179: + text: OBI:2100179 + description: An assay that measures IgA in venous blood as part of a quantitative + order + meaning: OBI:2100179 + title: quantitative venous blood IgA assay + OBI:2100180: + text: OBI:2100180 + description: An analyte assay that measures the abundance of sodium in arterial + blood + meaning: OBI:2100180 + title: arterial blood sodium assay + OBI:2100181: + text: OBI:2100181 + description: An analyte assay that measures the abundance of potassium in + arterial blood + meaning: OBI:2100181 + title: arterial blood potassium assay + OBI:2100182: + text: OBI:2100182 + description: An analyte assay that measures the abundance of calcium in arterial + blood as part of a ionized order + meaning: OBI:2100182 + title: ionized arterial blood calcium assay + OBI:2100183: + text: OBI:2100183 + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a vented blood gas order + meaning: OBI:2100183 + title: vented blood gas arterial blood bicarbonate assay + OBI:2100184: + text: OBI:2100184 + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a vented blood gas order + meaning: OBI:2100184 + title: vented blood gas arterial blood oxygen assay + OBI:2100185: + text: OBI:2100185 + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a vented blood gas order + meaning: OBI:2100185 + title: vented blood gas arterial blood carbon dioxide assay + OBI:2100186: + text: OBI:2100186 + description: A cytometry assay that measures the proportion of red blood cells + in arterial blood + meaning: OBI:2100186 + title: arterial blood hematocrit assay + OBI:2100187: + text: OBI:2100187 + description: An analyte assay that measures the abundance of chloride in arterial + blood + meaning: OBI:2100187 + title: arterial blood chloride assay + OBI:2100188: + text: OBI:2100188 + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood + meaning: OBI:2100188 + title: arterial blood hemoglobin assay + OBI:2100189: + text: OBI:2100189 + description: A cytometry assay that measures the proportion of red blood cells + in venous blood as part of a GEM premier blood gas order + meaning: OBI:2100189 + title: GEM premier blood gas venous blood hematocrit assay + OBI:2100190: + text: OBI:2100190 + description: An analyte assay that measures the abundance of ionized calcium + in venous blood as part of a GEM premier blood gas order + meaning: OBI:2100190 + title: GEM premier blood gas venous blood ionized calcium assay + OBI:2100191: + text: OBI:2100191 + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a GEM premier blood gas order + meaning: OBI:2100191 + title: GEM premier blood gas venous blood potassium assay + OBI:2100192: + text: OBI:2100192 + description: An analyte assay that measures the abundance of oxygen in venous + blood as part of a GEM premier blood gas order + meaning: OBI:2100192 + title: GEM premier blood gas venous blood oxygen assay + OBI:2100193: + text: OBI:2100193 + description: An analyte assay that measures the abundance of hemoglobin in + venous blood as part of a GEM premier blood gas order + meaning: OBI:2100193 + title: GEM premier blood gas venous blood hemoglobin assay + OBI:2100194: + text: OBI:2100194 + description: An analyte assay that measures the abundance of bicarbonate in + venous blood as part of a GEM premier blood gas order + meaning: OBI:2100194 + title: GEM premier blood gas venous blood bicarbonate assay + OBI:2100195: + text: OBI:2100195 + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a GEM premier blood gas order + meaning: OBI:2100195 + title: GEM premier blood gas venous blood glucose assay + OBI:2100196: + text: OBI:2100196 + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a GEM premier blood gas order + meaning: OBI:2100196 + title: GEM premier blood gas venous blood sodium assay + OBI:2100197: + text: OBI:2100197 + description: An assay that measures lactic acid in venous blood as part of + a GEM premier blood gas order + meaning: OBI:2100197 + title: GEM premier blood gas venous blood lactic acid assay + OBI:2100198: + text: OBI:2100198 + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a GEM premier blood gas order + meaning: OBI:2100198 + title: GEM premier blood gas venous blood carbon dioxide assay + OBI:2100199: + text: OBI:2100199 + description: An analyte assay that measures the abundance of tobramycin in + venous blood as part of a trough order + meaning: OBI:2100199 + title: trough venous blood tobramycin assay + OBI:2100200: + text: OBI:2100200 + description: An analyte assay that measures the abundance of tobramycin in + venous blood as part of a random order + meaning: OBI:2100200 + title: random venous blood tobramycin assay + OBI:2100201: + text: OBI:2100201 + description: A cytometry assay that measures the count of metamyelocytes in + venous blood as part of a CBC with manual differential order + meaning: OBI:2100201 + title: CBC with manual differential venous blood metamyelocyte count assay + OBI:2100202: + text: OBI:2100202 + description: An assay that measures lactic acid in arterial blood + meaning: OBI:2100202 + title: arterial blood lactic acid assay + OBI:2100203: + text: OBI:2100203 + description: An analyte assay that measures the abundance of 25-hydroxyvitamin + D2 in venous blood + meaning: OBI:2100203 + title: venous blood 25-hydroxyvitamin D2 assay + OBI:2100204: + text: OBI:2100204 + description: An analyte assay that measures the abundance of digoxin in venous + blood + meaning: OBI:2100204 + title: venous blood digoxin assay + OBI:2100205: + text: OBI:2100205 + description: An analyte assay that measures the abundance of protein in urine + meaning: OBI:2100205 + title: urine protein assay + OBI:2100206: + text: OBI:2100206 + description: An analyte assay that measures the abundance of tobramycin in + venous blood + meaning: OBI:2100206 + title: venous blood tobramycin assay + OBI:2100207: + text: OBI:2100207 + description: A cytometry assay that measures the count of myelocytes in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100207 + title: CBC with manual differential venous blood myelocyte count assay + OBI:2100208: + text: OBI:2100208 + description: An analyte assay that measures the abundance of beta-globin in + venous blood as part of a SPEP protein electrophoresis order + meaning: OBI:2100208 + title: SPEP protein electrophoresis venous blood beta-globin assay + OBI:2100209: + text: OBI:2100209 + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a SPEP protein electrophoresis order + meaning: OBI:2100209 + title: SPEP protein electrophoresis venous blood albumin assay + OBI:2100210: + text: OBI:2100210 + description: An analyte assay that measures the abundance of protein in venous + blood as part of a SPEP protein electrophoresis order + meaning: OBI:2100210 + title: SPEP protein electrophoresis venous blood protein assay + OBI:2100211: + text: OBI:2100211 + description: An analyte assay that measures the abundance of vancomycin in + venous blood as part of a trough order + meaning: OBI:2100211 + title: trough venous blood vancomycin assay + OBI:2100212: + text: OBI:2100212 + description: An analyte assay that measures the abundance of protein in venous + blood as part of a hepatic panel order + meaning: OBI:2100212 + title: hepatic panel venous blood protein assay + OBI:2100213: + text: OBI:2100213 + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a hepatic panel order + meaning: OBI:2100213 + title: hepatic panel venous blood bilirubin assay + OBI:2100214: + text: OBI:2100214 + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a hepatic panel order + meaning: OBI:2100214 + title: hepatic panel venous blood alanine aminotransferase assay + OBI:2100215: + text: OBI:2100215 + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a hepatic panel order + meaning: OBI:2100215 + title: hepatic panel venous blood human aspartate aminotransferase assay + OBI:2100216: + text: OBI:2100216 + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a hepatic panel order + meaning: OBI:2100216 + title: hepatic panel venous blood albumin assay + OBI:2100217: + text: OBI:2100217 + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a hepatic panel order + meaning: OBI:2100217 + title: hepatic panel venous blood human alkaline phosphatase assay + OBI:2100218: + text: OBI:2100218 + description: An assay that measures glomerular filtration in venous blood + as part of a estimated order + meaning: OBI:2100218 + title: estimated venous blood glomerular filtration assay + OBI:2100219: + text: OBI:2100219 + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a DT60 order + meaning: OBI:2100219 + title: DT60 venous blood creatinine assay + OBI:2100220: + text: OBI:2100220 + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a fasting order + meaning: OBI:2100220 + title: fasting venous blood glucose assay + OBI:2100221: + text: OBI:2100221 + description: An analyte assay that measures the abundance of amikacin in venous + blood as part of a random order + meaning: OBI:2100221 + title: random venous blood amikacin assay + OBI:2100222: + text: OBI:2100222 + description: An analyte assay that measures the abundance of ammonia in venous + blood + meaning: OBI:2100222 + title: venous blood ammonia assay + OBI:2100223: + text: OBI:2100223 + description: An analyte assay that measures the abundance of GGT in venous + blood + meaning: OBI:2100223 + title: venous blood GGT assay + OBI:2100224: + text: OBI:2100224 + description: An analyte assay that measures the abundance of phosphate in + venous blood as part of a chem11 order + meaning: OBI:2100224 + title: chem11 venous blood phosphate assay + OBI:2100225: + text: OBI:2100225 + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a chem11 order + meaning: OBI:2100225 + title: chem11 venous blood potassium assay + OBI:2100226: + text: OBI:2100226 + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a chem11 order + meaning: OBI:2100226 + title: chem11 venous blood calcium assay + OBI:2100227: + text: OBI:2100227 + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a chem11 order + meaning: OBI:2100227 + title: chem11 venous blood glucose assay + OBI:2100228: + text: OBI:2100228 + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a chem11 order + meaning: OBI:2100228 + title: chem11 venous blood carbon dioxide assay + OBI:2100229: + text: OBI:2100229 + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a chem11 order + meaning: OBI:2100229 + title: chem11 venous blood albumin assay + OBI:2100230: + text: OBI:2100230 + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a chem11 order + meaning: OBI:2100230 + title: chem11 venous blood sodium assay + OBI:2100231: + text: OBI:2100231 + description: An analyte assay that measures the abundance of magnesium in + venous blood as part of a chem11 order + meaning: OBI:2100231 + title: chem11 venous blood magnesium assay + OBI:2100232: + text: OBI:2100232 + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a chem11 order + meaning: OBI:2100232 + title: chem11 venous blood creatinine assay + OBI:2100233: + text: OBI:2100233 + description: An analyte assay that measures the abundance of chloride in venous + blood as part of a chem11 order + meaning: OBI:2100233 + title: chem11 venous blood chloride assay + OBI:2100234: + text: OBI:2100234 + description: An assay that measures IgE in venous blood as part of a total + order + meaning: OBI:2100234 + title: total venous blood IgE assay + OBI:2100235: + text: OBI:2100235 + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a chem16 order + meaning: OBI:2100235 + title: chem16 venous blood human aspartate aminotransferase assay + OBI:2100236: + text: OBI:2100236 + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a chem16 order + meaning: OBI:2100236 + title: chem16 venous blood creatinine assay + OBI:2100237: + text: OBI:2100237 + description: An analyte assay that measures the abundance of magnesium in + venous blood as part of a chem16 order + meaning: OBI:2100237 + title: chem16 venous blood magnesium assay + OBI:2100238: + text: OBI:2100238 + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a chem16 order + meaning: OBI:2100238 + title: chem16 venous blood carbon dioxide assay + OBI:2100239: + text: OBI:2100239 + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a chem16 order + meaning: OBI:2100239 + title: chem16 venous blood glucose assay + OBI:2100240: + text: OBI:2100240 + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a chem16 order + meaning: OBI:2100240 + title: chem16 venous blood calcium assay + OBI:2100241: + text: OBI:2100241 + description: An analyte assay that measures the abundance of triglyceride + in venous blood as part of a chem16 order + meaning: OBI:2100241 + title: chem16 venous blood triglyceride assay + OBI:2100242: + text: OBI:2100242 + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a chem16 order + meaning: OBI:2100242 + title: chem16 venous blood sodium assay + OBI:2100243: + text: OBI:2100243 + description: An analyte assay that measures the abundance of phosphate in + venous blood as part of a chem16 order + meaning: OBI:2100243 + title: chem16 venous blood phosphate assay + OBI:2100244: + text: OBI:2100244 + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a chem16 order + meaning: OBI:2100244 + title: chem16 venous blood human alkaline phosphatase assay + OBI:2100245: + text: OBI:2100245 + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a chem16 order + meaning: OBI:2100245 + title: chem16 venous blood albumin assay + OBI:2100246: + text: OBI:2100246 + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a chem16 order + meaning: OBI:2100246 + title: chem16 venous blood bilirubin assay + OBI:2100247: + text: OBI:2100247 + description: An analyte assay that measures the abundance of chloride in venous + blood as part of a chem16 order + meaning: OBI:2100247 + title: chem16 venous blood chloride assay + OBI:2100248: + text: OBI:2100248 + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a chem16 order + meaning: OBI:2100248 + title: chem16 venous blood alanine aminotransferase assay + OBI:2100249: + text: OBI:2100249 + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a chem16 order + meaning: OBI:2100249 + title: chem16 venous blood potassium assay + OBI:2100250: + text: OBI:2100250 + description: An analyte assay that measures the abundance of glucose in arterial + blood as part of a POC chem8 order + meaning: OBI:2100250 + title: POC chem8 arterial blood glucose assay + OBI:2100251: + text: OBI:2100251 + description: An analyte assay that measures the abundance of ionized calcium + in arterial blood as part of a POC chem8 order + meaning: OBI:2100251 + title: POC chem8 arterial blood ionized calcium assay + OBI:2100252: + text: OBI:2100252 + description: An analyte assay that measures the abundance of potassium in + arterial blood as part of a POC chem8 order + meaning: OBI:2100252 + title: POC chem8 arterial blood potassium assay + OBI:2100253: + text: OBI:2100253 + description: An analyte assay that measures the abundance of sodium in arterial + blood as part of a POC chem8 order + meaning: OBI:2100253 + title: POC chem8 arterial blood sodium assay + OBI:2100254: + text: OBI:2100254 + description: An analyte assay that measures the abundance of creatinine in + arterial blood as part of a POC chem8 order + meaning: OBI:2100254 + title: POC chem8 arterial blood creatinine assay + OBI:2100255: + text: OBI:2100255 + description: A cytometry assay that measures the proportion of red blood cells + in arterial blood as part of a POC chem8 order + meaning: OBI:2100255 + title: POC chem8 arterial blood hematocrit assay + OBI:2100256: + text: OBI:2100256 + description: An analyte assay that measures the abundance of chloride in arterial + blood as part of a POC chem8 order + meaning: OBI:2100256 + title: POC chem8 arterial blood chloride assay + OBI:2100257: + text: OBI:2100257 + description: An analyte assay that measures the abundance of tobramycin in + venous blood as part of a peak order + meaning: OBI:2100257 + title: peak venous blood tobramycin assay + OBI:2100258: + text: OBI:2100258 + description: An analyte assay that measures the abundance of creatinine in + urine as part of a 24 hour order + meaning: OBI:2100258 + title: 24 hour urine creatinine assay + OBI:2100259: + text: OBI:2100259 + description: An analyte assay that measures the abundance of PTH in venous + blood as part of a intact order + meaning: OBI:2100259 + title: intact venous blood PTH assay + OBI:2100260: + text: OBI:2100260 + description: An analyte assay that measures the abundance of PSA in venous + blood as part of a total order + meaning: OBI:2100260 + title: total venous blood PSA assay + OBI:2100261: + text: OBI:2100261 + description: An analyte assay that measures the abundance of T3 in venous + blood as part of a total order + meaning: OBI:2100261 + title: total venous blood T3 assay + OBI:2100262: + text: OBI:2100262 + description: An analyte assay that measures the abundance of protein in urine + as part of a 24 hour order + meaning: OBI:2100262 + title: 24 hour urine protein assay + OBI:2100263: + text: OBI:2100263 + description: An analyte assay that measures the abundance of cholesterol in + venous blood as part of a total order + meaning: OBI:2100263 + title: total venous blood cholesterol assay + OBI:2100264: + text: OBI:2100264 + description: An analyte assay that measures the abundance of triglyceride + in venous blood + meaning: OBI:2100264 + title: venous blood triglyceride assay + OBI:2100265: + text: OBI:2100265 + description: A cytometry assay that measures the count of cells in cerebrospinal + fluid as part of a tube 4 count order + meaning: OBI:2100265 + title: tube 4 count cerebrospinal fluid cell count assay + OBI:2100266: + text: OBI:2100266 + description: An analyte assay that measures the abundance of protein in cerebrospinal + fluid + meaning: OBI:2100266 + title: cerebrospinal fluid protein assay + OBI:2100267: + text: OBI:2100267 + description: An analyte assay that measures the abundance of glucose in cerebrospinal + fluid + meaning: OBI:2100267 + title: cerebrospinal fluid glucose assay + OBI:2100268: + text: OBI:2100268 + description: A cytometry assay that measures the count of cells in cerebrospinal + fluid as part of a tube 1 count order + meaning: OBI:2100268 + title: tube 1 count cerebrospinal fluid cell count assay + OBI:2100269: + text: OBI:2100269 + description: An analyte assay that measures the abundance of dehydroepiandrosterone + in venous blood + meaning: OBI:2100269 + title: venous blood dehydroepiandrosterone assay + OBI:2100270: + text: OBI:2100270 + description: An analyte assay that measures the abundance of cortisol in venous + blood + meaning: OBI:2100270 + title: venous blood cortisol assay + OBI:2100271: + text: OBI:2100271 + description: An analyte assay that measures the abundance of sodium in arterial + blood as part of a ABL90 panel order + meaning: OBI:2100271 + title: ABL90 panel arterial blood sodium assay + OBI:2100272: + text: OBI:2100272 + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a ABL90 panel order + meaning: OBI:2100272 + title: ABL90 panel arterial blood oxygen assay + OBI:2100273: + text: OBI:2100273 + description: An analyte assay that measures the abundance of glucose in arterial + blood as part of a ABL90 panel order + meaning: OBI:2100273 + title: ABL90 panel arterial blood glucose assay + OBI:2100274: + text: OBI:2100274 + description: An assay that measures lactic acid in arterial blood as part + of a ABL90 panel order + meaning: OBI:2100274 + title: ABL90 panel arterial blood lactic acid assay + OBI:2100275: + text: OBI:2100275 + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood as part of a ABL90 panel order + meaning: OBI:2100275 + title: ABL90 panel arterial blood hemoglobin assay + OBI:2100276: + text: OBI:2100276 + description: An analyte assay that measures the abundance of chloride in arterial + blood as part of a ABL90 panel order + meaning: OBI:2100276 + title: ABL90 panel arterial blood chloride assay + OBI:2100277: + text: OBI:2100277 + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a ABL90 panel order + meaning: OBI:2100277 + title: ABL90 panel arterial blood carbon dioxide assay + OBI:2100278: + text: OBI:2100278 + description: A cytometry assay that measures the proportion of red blood cells + in arterial blood as part of a ABL90 panel order + meaning: OBI:2100278 + title: ABL90 panel arterial blood hematocrit assay + OBI:2100279: + text: OBI:2100279 + description: An analyte assay that measures the abundance of calcium in arterial + blood as part of a ABL90 panel order + meaning: OBI:2100279 + title: ABL90 panel arterial blood calcium assay + OBI:2100280: + text: OBI:2100280 + description: An assay that measures temperature in arterial blood as part + of a ABL90 panel order + meaning: OBI:2100280 + title: ABL90 panel arterial blood temperature assay + OBI:2100281: + text: OBI:2100281 + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a ABL90 panel order + meaning: OBI:2100281 + title: ABL90 panel arterial blood bicarbonate assay + OBI:2100282: + text: OBI:2100282 + description: An analyte assay that measures the abundance of potassium in + arterial blood as part of a ABL90 panel order + meaning: OBI:2100282 + title: ABL90 panel arterial blood potassium assay + OBI:2100283: + text: OBI:2100283 + description: A cytometry assay that measures the count of promyelocytes in + venous blood as part of a CBC with manual differential order + meaning: OBI:2100283 + title: CBC with manual differential venous blood promyelocyte count assay + OBI:2100284: + text: OBI:2100284 + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a ABL90 panel order + meaning: OBI:2100284 + title: ABL90 panel venous blood glucose assay + OBI:2100285: + text: OBI:2100285 + description: An analyte assay that measures the abundance of hemoglobin in + venous blood as part of a ABL90 panel order + meaning: OBI:2100285 + title: ABL90 panel venous blood hemoglobin assay + OBI:2100286: + text: OBI:2100286 + description: An analyte assay that measures the abundance of ionized calcium + in venous blood as part of a ABL90 panel order + meaning: OBI:2100286 + title: ABL90 panel venous blood ionized calcium assay + OBI:2100287: + text: OBI:2100287 + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a ABL90 panel order + meaning: OBI:2100287 + title: ABL90 panel venous blood carbon dioxide assay + OBI:2100288: + text: OBI:2100288 + description: A cytometry assay that measures the proportion of red blood cells + in venous blood as part of a ABL90 panel order + meaning: OBI:2100288 + title: ABL90 panel venous blood hematocrit assay + OBI:2100289: + text: OBI:2100289 + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a ABL90 panel order + meaning: OBI:2100289 + title: ABL90 panel venous blood sodium assay + OBI:2100290: + text: OBI:2100290 + description: An analyte assay that measures the abundance of oxygen in venous + blood as part of a ABL90 panel order + meaning: OBI:2100290 + title: ABL90 panel venous blood oxygen assay + OBI:2100291: + text: OBI:2100291 + description: An analyte assay that measures the abundance of bicarbonate in + venous blood as part of a ABL90 panel order + meaning: OBI:2100291 + title: ABL90 panel venous blood bicarbonate assay + OBI:2100292: + text: OBI:2100292 + description: An assay that measures lactic acid in venous blood as part of + a ABL90 panel order + meaning: OBI:2100292 + title: ABL90 panel venous blood lactic acid assay + OBI:2100293: + text: OBI:2100293 + description: An analyte assay that measures the abundance of chloride in venous + blood as part of a ABL90 panel order + meaning: OBI:2100293 + title: ABL90 panel venous blood chloride assay + OBI:2100294: + text: OBI:2100294 + description: An analyte assay that measures the abundance of T4 in venous + blood + meaning: OBI:2100294 + title: venous blood T4 assay + OBI:2100295: + text: OBI:2100295 + description: An analyte assay that measures the abundance of T4 in venous + blood as part of a free order + meaning: OBI:2100295 + title: free venous blood T4 assay + OBI:2100296: + text: OBI:2100296 + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a ABL90 panel order + meaning: OBI:2100296 + title: ABL90 panel venous blood potassium assay + OBI:2100297: + text: OBI:2100297 + description: An analyte assay that measures the abundance of sodium in urine + meaning: OBI:2100297 + title: urine sodium assay + OBI:2100298: + text: OBI:2100298 + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a bone profile order + meaning: OBI:2100298 + title: bone profile venous blood albumin assay + OBI:2100299: + text: OBI:2100299 + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a bone profile order + meaning: OBI:2100299 + title: bone profile venous blood calcium assay + OBI:2100300: + text: OBI:2100300 + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a bone profile order + meaning: OBI:2100300 + title: bone profile venous blood human alkaline phosphatase assay + OBI:2100301: + text: OBI:2100301 + description: An analyte assay that measures the abundance of protein in venous + blood as part of a bone profile order + meaning: OBI:2100301 + title: bone profile venous blood protein assay + OBI:2100302: + text: OBI:2100302 + description: An analyte assay that measures the abundance of phosphate in + venous blood as part of a bone profile order + meaning: OBI:2100302 + title: bone profile venous blood phosphate assay + OBI:2100303: + text: OBI:2100303 + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a ABG/electrolytes order + meaning: OBI:2100303 + title: ABG/electrolytes arterial blood carbon dioxide assay + OBI:2100304: + text: OBI:2100304 + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a ABG/electrolytes order + meaning: OBI:2100304 + title: ABG/electrolytes arterial blood oxygen assay + OBI:2100305: + text: OBI:2100305 + description: An analyte assay that measures the abundance of ionized calcium + in arterial blood as part of a ABG/electrolytes order + meaning: OBI:2100305 + title: ABG/electrolytes arterial blood ionized calcium assay + OBI:2100306: + text: OBI:2100306 + description: A cytometry assay that measures the count of nucleated RBCs in + venous blood as part of a CBC with automated differential order + meaning: OBI:2100306 + title: CBC with automated differential venous blood nucleated RBC count assay + OBI:2100307: + text: OBI:2100307 + description: An analyte assay that measures the abundance of methemoglobin + in venous blood as part of a ABL90 panel order + meaning: OBI:2100307 + title: ABL90 panel venous blood methemoglobin assay + OBI:2100308: + text: OBI:2100308 + description: An analyte assay that measures the abundance of methemoglobin + in arterial blood as part of a ABL90 panel order + meaning: OBI:2100308 + title: ABL90 panel arterial blood methemoglobin assay + OBI:2100309: + text: OBI:2100309 + description: An analyte assay that measures the abundance of valproic acid + in venous blood + meaning: OBI:2100309 + title: venous blood valproic acid assay + OBI:2100310: + text: OBI:2100310 + description: An analyte assay that measures the abundance of c-reactive protein + in venous blood as part of a high sensitivity cardiac/neonatal order + meaning: OBI:2100310 + title: high sensitivity cardiac/neonatal venous blood c-reactive protein assay + OBI:2100311: + text: OBI:2100311 + description: An analyte assay that measures the abundance of creatinine in + arterial blood as part of a POC order + meaning: OBI:2100311 + title: POC arterial blood creatinine assay + OBI:2100312: + text: OBI:2100312 + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100312 + title: GEM4000 ANLCOOX arterial blood bicarbonate assay + OBI:2100313: + text: OBI:2100313 + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100313 + title: GEM4000 ANLCOOX arterial blood oxygen assay + OBI:2100314: + text: OBI:2100314 + description: A cytometry assay that measures the proportion of red blood cells + in arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100314 + title: GEM4000 ANLCOOX arterial blood hematocrit assay + OBI:2100315: + text: OBI:2100315 + description: An assay that measures temperature in arterial blood as part + of a GEM4000 ANLCOOX order + meaning: OBI:2100315 + title: GEM4000 ANLCOOX arterial blood temperature assay + OBI:2100316: + text: OBI:2100316 + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100316 + title: GEM4000 ANLCOOX arterial blood hemoglobin assay + OBI:2100317: + text: OBI:2100317 + description: An analyte assay that measures the abundance of potassium in + arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100317 + title: GEM4000 ANLCOOX arterial blood potassium assay + OBI:2100318: + text: OBI:2100318 + description: An analyte assay that measures the abundance of glucose in arterial + blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100318 + title: GEM4000 ANLCOOX arterial blood glucose assay + OBI:2100319: + text: OBI:2100319 + description: An analyte assay that measures the abundance of ionized calcium + in arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100319 + title: GEM4000 ANLCOOX arterial blood ionized calcium assay + OBI:2100320: + text: OBI:2100320 + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100320 + title: GEM4000 ANLCOOX arterial blood carbon dioxide assay + OBI:2100321: + text: OBI:2100321 + description: An analyte assay that measures the abundance of sodium in arterial + blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100321 + title: GEM4000 ANLCOOX arterial blood sodium assay + OBI:2100322: + text: OBI:2100322 + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a ionized order + meaning: OBI:2100322 + title: ionized venous blood calcium assay + OBI:2100323: + text: OBI:2100323 + description: An analyte assay that measures the abundance of hemoglobin in + venous blood + meaning: OBI:2100323 + title: venous blood hemoglobin assay + OBI:2100324: + text: OBI:2100324 + description: A cytometry assay that measures the count of megakaryocytes in + venous blood as part of a CBC with manual differential order + meaning: OBI:2100324 + title: CBC with manual differential venous blood megakaryocyte count assay + OBI:2100325: + text: OBI:2100325 + description: An analyte assay that measures the abundance of c-reactive protein + in venous blood as part of a non-cardiac order + meaning: OBI:2100325 + title: non-cardiac venous blood c-reactive protein assay + OBI:2100326: + text: OBI:2100326 + description: An analyte assay that measures the abundance of PTH in venous + blood as part of a intraoperative order + meaning: OBI:2100326 + title: intraoperative venous blood PTH assay + OBI:2100327: + text: OBI:2100327 + description: An analyte assay that measures the abundance of parathyroid hormone + in venous blood + meaning: OBI:2100327 + title: venous blood parathyroid hormone assay + OBI:2100328: + text: OBI:2100328 + description: An analyte assay that measures the abundance of protein in bodily + fluid as part of a total order + meaning: OBI:2100328 + title: total bodily fluid protein assay + OBI:2100329: + text: OBI:2100329 + description: An analyte assay that measures the abundance of glucose in bodily + fluid + meaning: OBI:2100329 + title: bodily fluid glucose assay + OBI:2100330: + text: OBI:2100330 + description: A cytometry assay that measures the count of cells in bodily + fluid as part of a count order + meaning: OBI:2100330 + title: count bodily fluid cell count assay + OBI:2100331: + text: OBI:2100331 + description: A cytometry assay that measures the count of segmented neutrophils + in bodily fluid as part of a manual differential order + meaning: OBI:2100331 + title: manual differential bodily fluid segmented neutrophil count assay + OBI:2100332: + text: OBI:2100332 + description: A cytometry assay that measures the count of mesothelial cells + in bodily fluid as part of a manual differential order + meaning: OBI:2100332 + title: manual differential bodily fluid mesothelial cell count assay + OBI:2100333: + text: OBI:2100333 + description: A cytometry assay that measures the count of monocytes in bodily + fluid as part of a manual differential order + meaning: OBI:2100333 + title: manual differential bodily fluid monocyte count assay + OBI:2100334: + text: OBI:2100334 + description: A cytometry assay that measures the count of lymphocytes in bodily + fluid as part of a manual differential order + meaning: OBI:2100334 + title: manual differential bodily fluid lymphocyte count assay + OBI:2100335: + text: OBI:2100335 + description: A cytometry assay that measures the count of macrophages in bodily + fluid as part of a manual differential order + meaning: OBI:2100335 + title: manual differential bodily fluid macrophage count assay + OBI:2100336: + text: OBI:2100336 + description: A cytometry assay that measures the count of basophils in bodily + fluid as part of a manual differential order + meaning: OBI:2100336 + title: manual differential bodily fluid basophil count assay + OBI:2100337: + text: OBI:2100337 + description: A cytometry assay that measures the count of eosinophils in bodily + fluid as part of a manual differential order + meaning: OBI:2100337 + title: manual differential bodily fluid eosinophil count assay + OBI:2100338: + text: OBI:2100338 + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a liver function order + meaning: OBI:2100338 + title: liver function venous blood bilirubin assay + OBI:2100339: + text: OBI:2100339 + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a liver function order + meaning: OBI:2100339 + title: liver function venous blood alanine aminotransferase assay + OBI:2100340: + text: OBI:2100340 + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a liver function order + meaning: OBI:2100340 + title: liver function venous blood human aspartate aminotransferase assay + OBI:2100341: + text: OBI:2100341 + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a liver function order + meaning: OBI:2100341 + title: liver function venous blood albumin assay + OBI:2100342: + text: OBI:2100342 + description: An analyte assay that measures the abundance of protein in venous + blood as part of a liver function order + meaning: OBI:2100342 + title: liver function venous blood protein assay + OBI:2100343: + text: OBI:2100343 + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a liver function order + meaning: OBI:2100343 + title: liver function venous blood human alkaline phosphatase assay + OBI:2100344: + text: OBI:2100344 + description: An analyte assay that measures the abundance of folic acid in + venous blood as part of a vitamin B12 and Folate order + meaning: OBI:2100344 + title: vitamin B12 and Folate venous blood folic acid assay + OBI:2100345: + text: OBI:2100345 + description: A cytometry assay that measures the count of cells in bodily + fluid + meaning: OBI:2100345 + title: bodily fluid cell count assay + OBI:2100346: + text: OBI:2100346 + description: A cytometry assay that measures the count of reticulocytes in + venous blood + meaning: OBI:2100346 + title: venous blood reticulocyte count assay + OBI:2100347: + text: OBI:2100347 + description: An analyte assay that measures the abundance of cholesterol in + bodily fluid + meaning: OBI:2100347 + title: bodily fluid cholesterol assay + OBI:2100348: + text: OBI:2100348 + description: An analyte assay that measures the abundance of thyroid stimulating + hormone in venous blood as part of a TSH reflex Free T4 order + meaning: OBI:2100348 + title: TSH reflex Free T4 venous blood thyroid stimulating hormone assay + OBI:2100349: + text: OBI:2100349 + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a direct order + meaning: OBI:2100349 + title: direct venous blood bilirubin assay + OBI:2100350: + text: OBI:2100350 + description: An analyte assay that measures the abundance of T3 in venous + blood as part of a free order + meaning: OBI:2100350 + title: free venous blood T3 assay + OBI:2100351: + text: OBI:2100351 + description: An analyte assay that measures the abundance of albumin in bodily + fluid + meaning: OBI:2100351 + title: bodily fluid albumin assay + OBI:2100352: + text: OBI:2100352 + description: An analyte assay that measures the abundance of triglyceride + in bodily fluid + meaning: OBI:2100352 + title: bodily fluid triglyceride assay + OBI:2100353: + text: OBI:2100353 + description: A cytometry assay that measures the proportion of red blood cells + in venous blood as part of a hemoglobin and hematocrit order + meaning: OBI:2100353 + title: hemoglobin and hematocrit venous blood hematocrit assay + OBI:2100354: + text: OBI:2100354 + description: An analyte assay that measures the abundance of hemoglobin in + venous blood as part of a hemoglobin and hematocrit order + meaning: OBI:2100354 + title: hemoglobin and hematocrit venous blood hemoglobin assay + OBI:2100355: + text: OBI:2100355 + description: An analyte assay that measures the abundance of ionized calcium + in venous blood + meaning: OBI:2100355 + title: venous blood ionized calcium assay + OBI:2100356: + text: OBI:2100356 + description: An assay that measures temperature in venous blood + meaning: OBI:2100356 + title: venous blood temperature assay + OBI:2100357: + text: OBI:2100357 + description: An analyte assay that measures the abundance of bicarbonate in + venous blood + meaning: OBI:2100357 + title: venous blood bicarbonate assay + OBI:2100358: + text: OBI:2100358 + description: An analyte assay that measures the abundance of oxygen in venous + blood + meaning: OBI:2100358 + title: venous blood oxygen assay + OBI:2100359: + text: OBI:2100359 + description: An assay that measures osmolality in venous blood + meaning: OBI:2100359 + title: venous blood osmolality assay + OBI:2100360: + text: OBI:2100360 + description: A cytometry assay that measures the count of platelets in venous + blood as part of a liver fibrosis (chronic viral hepatitis) order + meaning: OBI:2100360 + title: liver fibrosis (chronic viral hepatitis) venous blood platelet count + assay + OBI:2100361: + text: OBI:2100361 + description: An analyte assay that measures the abundance of T3 in venous + blood + meaning: OBI:2100361 + title: venous blood T3 assay + OBI:2100362: + text: OBI:2100362 + description: A cytometry assay that measures the count of neutrophils in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100362 + title: CBC with manual differential venous blood neutrophil count assay + OBI:2100363: + text: OBI:2100363 + description: An analyte assay that measures the abundance of creatinine in + urine as part of a creatinine clearance order + meaning: OBI:2100363 + title: creatinine clearance urine creatinine assay + OBI:2100364: + text: OBI:2100364 + description: An analyte assay that measures the abundance of beta hydroxybutryic + acid in venous blood + meaning: OBI:2100364 + title: venous blood beta hydroxybutryic acid assay + OBI:2100365: + text: OBI:2100365 + description: A cytometry assay that measures the count of megakaryocytes in + venous blood + meaning: OBI:2100365 + title: venous blood megakaryocyte count assay + OBI:2100366: + text: OBI:2100366 + description: A cytometry assay that measures the count of nucleated RBCs in + venous blood + meaning: OBI:2100366 + title: venous blood nucleated RBC count assay + OBI:2100367: + text: OBI:2100367 + description: A cytometry assay that measures the count of WBCs in venous blood + meaning: OBI:2100367 + title: venous blood WBC count assay + OBI:2100368: + text: OBI:2100368 + description: A cytometry assay that measures the count of reticulocytes in + venous blood as part of a automated count order + meaning: OBI:2100368 + title: automated count venous blood reticulocyte count assay + OBI:2100369: + text: OBI:2100369 + description: An analyte assay that measures the abundance of homocysteine + in venous blood as part of a total order + meaning: OBI:2100369 + title: total venous blood homocysteine assay + OBI:2100370: + text: OBI:2100370 + description: An analyte assay that measures the abundance of Ceruloplasmin + in venous blood + meaning: OBI:2100370 + title: venous blood Ceruloplasmin assay + OBI:2100371: + text: OBI:2100371 + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a GEM4 order + meaning: OBI:2100371 + title: GEM4 arterial blood bicarbonate assay + OBI:2100372: + text: OBI:2100372 + description: An assay that measures lactic acid in arterial blood as part + of a GEM4 order + meaning: OBI:2100372 + title: GEM4 arterial blood lactic acid assay + OBI:2100373: + text: OBI:2100373 + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood as part of a GEM4 order + meaning: OBI:2100373 + title: GEM4 arterial blood hemoglobin assay + OBI:2100374: + text: OBI:2100374 + description: An analyte assay that measures the abundance of sodium in arterial + blood as part of a GEM4 order + meaning: OBI:2100374 + title: GEM4 arterial blood sodium assay + OBI:2100375: + text: OBI:2100375 + description: An analyte assay that measures the abundance of potassium in + arterial blood as part of a GEM4 order + meaning: OBI:2100375 + title: GEM4 arterial blood potassium assay + OBI:2100376: + text: OBI:2100376 + description: An assay that measures temperature in arterial blood as part + of a GEM4 order + meaning: OBI:2100376 + title: GEM4 arterial blood temperature assay + OBI:2100377: + text: OBI:2100377 + description: An analyte assay that measures the abundance of glucose in arterial + blood as part of a GEM4 order + meaning: OBI:2100377 + title: GEM4 arterial blood glucose assay + OBI:2100378: + text: OBI:2100378 + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a GEM4 order + meaning: OBI:2100378 + title: GEM4 arterial blood oxygen assay + OBI:2100379: + text: OBI:2100379 + description: A cytometry assay that measures the proportion of red blood cells + in arterial blood as part of a GEM4 order + meaning: OBI:2100379 + title: GEM4 arterial blood hematocrit assay + OBI:2100380: + text: OBI:2100380 + description: An analyte assay that measures the abundance of ionized calcium + in arterial blood as part of a GEM4 order + meaning: OBI:2100380 + title: GEM4 arterial blood ionized calcium assay + OBI:2100381: + text: OBI:2100381 + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a GEM4 order + meaning: OBI:2100381 + title: GEM4 arterial blood carbon dioxide assay + OBI:2100382: + text: OBI:2100382 + description: A cytometry assay that measures the count of platelets in venous + blood as part of a liver fibrosis (NAFLD) order + meaning: OBI:2100382 + title: liver fibrosis (NAFLD) venous blood platelet count assay + OBI:2100383: + text: OBI:2100383 + description: An analyte assay that measures the abundance of beta hydroxybutric + acid in venous blood + meaning: OBI:2100383 + title: venous blood beta hydroxybutric acid assay + OBI:2100384: + text: OBI:2100384 + description: A cytometry assay that measures the count of plasma cells in + venous blood as part of a CBC with manual differential order + meaning: OBI:2100384 + title: CBC with manual differential venous blood plasma cell count assay + OBI:2100385: + text: OBI:2100385 + description: An analyte assay that measures the abundance of erythropoietin + in venous blood + meaning: OBI:2100385 + title: venous blood erythropoietin assay + OBI:2100386: + text: OBI:2100386 + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a blood gas order + meaning: OBI:2100386 + title: blood gas arterial blood oxygen assay + OBI:2100387: + text: OBI:2100387 + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a blood gas order + meaning: OBI:2100387 + title: blood gas arterial blood bicarbonate assay + OBI:2100388: + text: OBI:2100388 + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a blood gas order + meaning: OBI:2100388 + title: blood gas arterial blood carbon dioxide assay + OBI:2100389: + text: OBI:2100389 + description: An analyte assay that measures the abundance of PSA in venous + blood as part of a free/total order + meaning: OBI:2100389 + title: free/total venous blood PSA assay + OBI:2100390: + text: OBI:2100390 + description: A cytometry assay that measures the count of lymphocytes in cerebrospinal + fluid + meaning: OBI:2100390 + title: cerebrospinal fluid lymphocyte count assay + OBI:2100391: + text: OBI:2100391 + description: A cytometry assay that measures the count of segmented neutrophils + in cerebrospinal fluid + meaning: OBI:2100391 + title: cerebrospinal fluid segmented neutrophil count assay + OBI:2100392: + text: OBI:2100392 + description: A cytometry assay that measures the count of mesothelial cells + in cerebrospinal fluid + meaning: OBI:2100392 + title: cerebrospinal fluid mesothelial cell count assay + OBI:2100393: + text: OBI:2100393 + description: A cytometry assay that measures the count of macrophages in cerebrospinal + fluid + meaning: OBI:2100393 + title: cerebrospinal fluid macrophage count assay + OBI:2100394: + text: OBI:2100394 + description: A cytometry assay that measures the count of basophils in cerebrospinal + fluid + meaning: OBI:2100394 + title: cerebrospinal fluid basophil count assay + OBI:2100395: + text: OBI:2100395 + description: A cytometry assay that measures the count of monocytes in cerebrospinal + fluid + meaning: OBI:2100395 + title: cerebrospinal fluid monocyte count assay + OBI:2100396: + text: OBI:2100396 + description: A cytometry assay that measures the count of eosinophils in cerebrospinal + fluid + meaning: OBI:2100396 + title: cerebrospinal fluid eosinophil count assay + OBI:2100397: + text: OBI:2100397 + description: An analyte assay that measures the abundance of beta-2-microglobulin + in venous blood + meaning: OBI:2100397 + title: venous blood beta-2-microglobulin assay + OBI:2100398: + text: OBI:2100398 + description: An analyte assay that measures the abundance of low density lipoprotein + in venous blood as part of a Lipid panel reflex direct order + meaning: OBI:2100398 + title: lipid panel reflex direct venous blood low density lipoprotein assay + OBI:2100399: + text: OBI:2100399 + description: An analyte assay that measures the abundance of triglyceride + in venous blood as part of a Lipid panel reflex direct order + meaning: OBI:2100399 + title: lipid panel reflex direct venous blood triglyceride assay + OBI:2100400: + text: OBI:2100400 + description: An analyte assay that measures the abundance of cholesterol in + venous blood as part of a Lipid panel reflex direct order + meaning: OBI:2100400 + title: lipid panel reflex direct venous blood cholesterol assay + OBI:2100401: + text: OBI:2100401 + description: An analyte assay that measures the abundance of high density + lipoprotein in venous blood as part of a Lipid panel reflex direct order + meaning: OBI:2100401 + title: lipid panel reflex direct venous blood high density lipoprotein assay + OBI:2100402: + text: OBI:2100402 + description: A DNA sequencing assay in which the DNA input is derived from + pooled clones (for example BACs and Fosmids) is sequenced. + meaning: OBI:2100402 + title: pooled clone sequencing assay + OBI:9999994: + text: OBI:9999994 + description: An in vitro cell killing assay in which radioactive chromium + is absorbed by cells and released into supernatant when the cells die. The + amount of radioactivity measured in the supernatant is a proxy for the number + of cells that have died. + meaning: OBI:9999994 + title: chromium release assay + reachable_from: + source_ontology: bioregistry:obi + source_nodes: + - OBI:0000070 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: true + EnumAsserterType: + name: EnumAsserterType + description: Individuals or organizations making assertions. + from_schema: https://includedcc.org/common-access-model/EnumAsserterType + permissible_values: + CAMO:0000016: + text: CAMO:0000016 + description: Assertion made by research staff. + title: Research Staff Asserted + aliases: + - investigator_assessment + CAMO:0000017: + text: CAMO:0000017 + description: Assertion documented by a healthcare system or provider. + title: Healthcare Asserted + aliases: + - medical_record + CAMO:0000018: + text: CAMO:0000018 + description: Assertion made by a study participant, their representative, + or some combination. + title: Participant or Representative Asserted + aliases: + - participant_or_caregiver_report + CAMO:0000019: + text: CAMO:0000019 + description: Assertion made by a study participant. + title: Participant Asserted + CAMO:0000020: + text: CAMO:0000020 + description: Assertion made by a study participant's representative or representatives. + title: Representative Asserted + CAMO:0000021: + text: CAMO:0000021 + description: Assertion made by a study participant's caregiver or caregivers. + title: Caregiver Asserted + reachable_from: + source_ontology: camo + source_nodes: + - CAMO:0000015 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: true + EnumAvailabilityStatus: + name: EnumAvailabilityStatus + description: Is this item available for use? + from_schema: https://includedcc.org/common-access-model/EnumAvailabilityStatus + permissible_values: + snomedct:103328004: + text: snomedct:103328004 + description: The item is available to users, authorization/request permitting. + meaning: snomedct:103328004 + title: Available + snomedct:103329007: + text: snomedct:103329007 + description: The item is not available to users. + meaning: snomedct:103329007 + title: Unavailable + EnumDataCategory: + name: EnumDataCategory + description: Categories of data which may be collected about participants. + title: Data Category + from_schema: https://includedcc.org/common-access-model/EnumDataCategory + permissible_values: + edam:topic_0077: + text: edam:topic_0077 + description: The processing and analysis of nucleic acid sequence, structural + and other data. + meaning: edam:topic_0077 + title: Nucleic acids + edam:topic_0078: + text: edam:topic_0078 + description: Archival, processing and analysis of protein data, typically + molecular sequence and structural data. + meaning: edam:topic_0078 + title: Proteins + edam:topic_0080: + text: edam:topic_0080 + description: The archival, processing and analysis of molecular sequences + (monomer composition of polymers) including molecular sequence data resources, + sequence sites, alignments, motifs and profiles. + meaning: edam:topic_0080 + title: Sequence analysis + edam:topic_0081: + text: edam:topic_0081 + description: The curation, processing, analysis and prediction of data about + the structure of biological molecules, typically proteins and nucleic acids + and other macromolecules. + meaning: edam:topic_0081 + title: Structure analysis + edam:topic_0082: + text: edam:topic_0082 + description: The prediction of molecular structure, including the prediction, + modelling, recognition or design of protein secondary or tertiary structure + or other structural features, and the folding of nucleic acid molecules + and the prediction or design of nucleic acid (typically RNA) sequences with + specific conformations. + meaning: edam:topic_0082 + title: Structure prediction + edam:topic_0084: + text: edam:topic_0084 + description: The study of evolutionary relationships amongst organisms. + meaning: edam:topic_0084 + title: Phylogeny + edam:topic_0085: + text: edam:topic_0085 + description: The study of gene or protein functions and their interactions + in totality in a given organism, tissue, cell etc. + meaning: edam:topic_0085 + title: Functional genomics + edam:topic_0089: + text: edam:topic_0089 + description: The conceptualisation, categorisation and nomenclature (naming) + of entities or phenomena within biology or bioinformatics. This includes + formal ontologies, controlled vocabularies, structured glossary, symbols + and terminology or other related resource. + meaning: edam:topic_0089 + title: Ontology and terminology + edam:topic_0091: + text: edam:topic_0091 + description: The archival, curation, processing and analysis of complex biological + data. + meaning: edam:topic_0091 + title: Bioinformatics + edam:topic_0092: + text: edam:topic_0092 + description: Rendering (drawing on a computer screen) or visualisation of + molecular sequences, structures or other biomolecular data. + meaning: edam:topic_0092 + title: Data visualisation + edam:topic_0097: + text: edam:topic_0097 + description: The archival, curation, processing and analysis of nucleic acid + structural information, such as whole structures, structural features and + alignments, and associated annotation. + meaning: edam:topic_0097 + title: Nucleic acid structure analysis + edam:topic_0099: + text: edam:topic_0099 + description: RNA sequences and structures. + meaning: edam:topic_0099 + title: RNA + edam:topic_0102: + text: edam:topic_0102 + description: The mapping of complete (typically nucleotide) sequences. Mapping + (in the sense of short read alignment, or more generally, just alignment) + has application in RNA-Seq analysis (mapping of transcriptomics reads), + variant discovery (e.g. mapping of exome capture), and re-sequencing (mapping + of WGS reads). + meaning: edam:topic_0102 + title: Mapping + edam:topic_0108: + text: edam:topic_0108 + description: The translation of mRNA into protein and subsequent protein processing + in the cell. + meaning: edam:topic_0108 + title: Protein expression + edam:topic_0114: + text: edam:topic_0114 + description: Gene structure, regions which make an RNA product and features + such as promoters, coding regions, gene fusion, splice sites etc. + meaning: edam:topic_0114 + title: Gene structure + edam:topic_0121: + text: edam:topic_0121 + description: Proteomics is in the narrow sense (sensu stricto) the application + of methods to separate, characterise, identify, and quantify all proteins + (the proteome) - or a substantial set of proteins - that are present in + a sample. Proteomics in the broad sense is the science of proteins and peptides + on the large scale. + meaning: edam:topic_0121 + title: Proteomics + edam:topic_0122: + text: edam:topic_0122 + description: The elucidation of the three dimensional structure for all (available) + proteins in a given organism. + meaning: edam:topic_0122 + title: Structural genomics + edam:topic_0123: + text: edam:topic_0123 + description: The study of the physical and biochemical properties of peptides + and proteins, for example the hydrophobic, hydrophilic and charge properties + of a protein. + meaning: edam:topic_0123 + title: Protein properties + edam:topic_0128: + text: edam:topic_0128 + description: Protein-protein, protein-DNA/RNA and protein-ligand interactions, + including analysis of known interactions and prediction of putative interactions. + meaning: edam:topic_0128 + title: Protein interactions + edam:topic_0130: + text: edam:topic_0130 + description: Protein stability, folding (in 3D space) and protein sequence-structure-function + relationships. This includes for example study of inter-atomic or inter-residue + interactions in protein (3D) structures, the effect of mutation, and the + design of proteins with specific properties, typically by designing changes + (via site-directed mutagenesis) to an existing protein. + meaning: edam:topic_0130 + title: Protein folding, stability and design + edam:topic_0140: + text: edam:topic_0140 + description: The study of how proteins are transported within and without + the cell, including signal peptides, protein subcellular localisation and + export. + meaning: edam:topic_0140 + title: Protein targeting and localisation + edam:topic_0152: + text: edam:topic_0152 + description: Carbohydrates, typically including structural information. + meaning: edam:topic_0152 + title: Carbohydrates + edam:topic_0153: + text: edam:topic_0153 + description: Lipids and their structures. + meaning: edam:topic_0153 + title: Lipidomics + edam:topic_0154: + text: edam:topic_0154 + description: Small molecules of biological significance, typically archival, + curation, processing and analysis of structural information. + meaning: edam:topic_0154 + title: Small molecules + edam:topic_0157: + text: edam:topic_0157 + description: The archival, processing and analysis of the basic character + composition of molecular sequences, for example character or word frequency, + ambiguity, complexity, particularly regions of low complexity, and repeats + or the repetitive nature of molecular sequences. + meaning: edam:topic_0157 + title: Sequence composition, complexity and repeats + edam:topic_0160: + text: edam:topic_0160 + description: The archival, detection, prediction and analysis of positional + features such as functional and other key sites, in molecular sequences + and the conserved patterns (motifs, profiles etc.) that may be used to describe + them. + meaning: edam:topic_0160 + title: Sequence sites, features and motifs + edam:topic_0166: + text: edam:topic_0166 + description: Structural features or common 3D motifs within protein structures, + including the surface of a protein structure, such as biological interfaces + with other molecules. + meaning: edam:topic_0166 + title: Protein structural motifs and surfaces + edam:topic_0176: + text: edam:topic_0176 + description: The study and simulation of molecular (typically protein) conformation + using a computational model of physical forces and computer simulation. + meaning: edam:topic_0176 + title: Molecular dynamics + edam:topic_0194: + text: edam:topic_0194 + description: The integrated study of evolutionary relationships and whole + genome data, for example, in the analysis of species trees, horizontal gene + transfer and evolutionary reconstruction. + meaning: edam:topic_0194 + title: Phylogenomics + edam:topic_0196: + text: edam:topic_0196 + description: The assembly of fragments of a DNA sequence to reconstruct the + original sequence. + meaning: edam:topic_0196 + title: Sequence assembly + edam:topic_0199: + text: edam:topic_0199 + description: Stable, naturally occurring mutations in a nucleotide sequence + including alleles, naturally occurring mutations such as single base nucleotide + substitutions, deletions and insertions, RFLPs and other polymorphisms. + meaning: edam:topic_0199 + title: Genetic variation + edam:topic_0202: + text: edam:topic_0202 + description: The study of drugs and their effects or responses in living systems. + meaning: edam:topic_0202 + title: Pharmacology + edam:topic_0203: + text: edam:topic_0203 + description: The analysis of levels and patterns of synthesis of gene products + (proteins and functional RNA) including interpretation in functional terms + of gene expression data. + meaning: edam:topic_0203 + title: Gene expression + edam:topic_0204: + text: edam:topic_0204 + description: The regulation of gene expression. + meaning: edam:topic_0204 + title: Gene regulation + edam:topic_0208: + text: edam:topic_0208 + description: The influence of genotype on drug response, for example by correlating + gene expression or single-nucleotide polymorphisms with drug efficacy or + toxicity. + meaning: edam:topic_0208 + title: Pharmacogenomics + edam:topic_0209: + text: edam:topic_0209 + description: The design and chemical synthesis of bioactive molecules, for + example drugs or potential drug compounds, for medicinal purposes. + meaning: edam:topic_0209 + title: Medicinal chemistry + edam:topic_0218: + text: edam:topic_0218 + description: The processing and analysis of natural language, such as scientific + literature in English, in order to extract data and information, or to enable + human-computer interaction. + meaning: edam:topic_0218 + title: Natural language processing + edam:topic_0219: + text: edam:topic_0219 + description: Data curation and archival includes the preservation of data + in a repository, archive, or a deposition database; and curation of data + and metadata, database accessions, annotation, and data provenance. + meaning: edam:topic_0219 + title: Data curation and archival + edam:topic_0593: + text: edam:topic_0593 + description: An analytical technique that exploits the magenetic properties + of certain atomic nuclei to provide information on the structure, dynamics, + reaction state and chemical environment of molecules. + meaning: edam:topic_0593 + title: NMR + edam:topic_0601: + text: edam:topic_0601 + description: Protein chemical modifications, e.g. post-translational modifications. + meaning: edam:topic_0601 + title: Protein modifications + edam:topic_0602: + text: edam:topic_0602 + description: Molecular interactions, biological pathways, networks and other + models. + meaning: edam:topic_0602 + title: Molecular interactions, pathways and networks + edam:topic_0605: + text: edam:topic_0605 + description: The study and practice of information processing and use of computer + information systems. + meaning: edam:topic_0605 + title: Informatics + edam:topic_0607: + text: edam:topic_0607 + description: Laboratory management and resources, for example, catalogues + of biological resources for use in the lab including cell lines, viruses, + plasmids, phages, DNA probes and primers and so on. + meaning: edam:topic_0607 + title: Laboratory information management + edam:topic_0610: + text: edam:topic_0610 + description: The ecological and environmental sciences and especially the + application of information technology (ecoinformatics). + meaning: edam:topic_0610 + title: Ecology + edam:topic_0611: + text: edam:topic_0611 + description: The study of matter by studying the interference pattern from + firing electrons at a sample, to analyse structures at resolutions higher + than can be achieved using light. + meaning: edam:topic_0611 + title: Electron microscopy + edam:topic_0621: + text: edam:topic_0621 + description: A specific organism, or group of organisms, used to study a particular + aspect of biology. + meaning: edam:topic_0621 + title: Model organisms + edam:topic_0622: + text: edam:topic_0622 + description: Whole genomes of one or more organisms, or genomes in general, + such as meta-information on genomes, genome projects, gene names etc. + meaning: edam:topic_0622 + title: Genomics + edam:topic_0623: + text: edam:topic_0623 + description: Particular gene(s), gene family or other gene group or system + and their encoded proteins.Primarily the classification of proteins (from + sequence or structural data) into clusters, groups, families etc., curation + of a particular protein or protein family, or any other proteins that have + been classified as members of a common group. + meaning: edam:topic_0623 + title: Gene and protein families + edam:topic_0625: + text: edam:topic_0625 + description: The study of genetic constitution of a living entity, such as + an individual, and organism, a cell and so on, typically with respect to + a particular observable phenotypic traits, or resources concerning such + traits, which might be an aspect of biochemistry, physiology, morphology, + anatomy, development and so on. + meaning: edam:topic_0625 + title: Genotype and phenotype + edam:topic_0632: + text: edam:topic_0632 + description: Molecular probes (e.g. a peptide probe or DNA microarray probe) + or PCR primers and hybridisation oligos in a nucleic acid sequence. + meaning: edam:topic_0632 + title: Probes and primers + edam:topic_0634: + text: edam:topic_0634 + description: Diseases, including diseases in general and the genes, gene variations + and proteins involved in one or more specific diseases. + meaning: edam:topic_0634 + title: Pathology + edam:topic_0637: + text: edam:topic_0637 + description: Organism classification, identification and naming. + meaning: edam:topic_0637 + title: Taxonomy + edam:topic_0654: + text: edam:topic_0654 + description: DNA sequences and structure, including processes such as methylation + and replication. + meaning: edam:topic_0654 + title: DNA + edam:topic_0659: + text: edam:topic_0659 + description: Non-coding or functional RNA sequences, including regulatory + RNA sequences, ribosomal RNA (rRNA) and transfer RNA (tRNA). + meaning: edam:topic_0659 + title: Functional, regulatory and non-coding RNA + edam:topic_0736: + text: edam:topic_0736 + description: Protein tertiary structural domains and folds in a protein or + polypeptide chain. + meaning: edam:topic_0736 + title: Protein folds and structural domains + edam:topic_0749: + text: edam:topic_0749 + description: Proteins that bind to DNA and control transcription of DNA to + mRNA (transcription factors) and also transcriptional regulatory sites, + elements and regions (such as promoters, enhancers, silencers and boundary + elements / insulators) in nucleotide sequences. + meaning: edam:topic_0749 + title: Transcription factors and regulatory sites + edam:topic_0769: + text: edam:topic_0769 + description: Biological or biomedical analytical workflows or pipelines. + meaning: edam:topic_0769 + title: Workflows + edam:topic_0780: + text: edam:topic_0780 + description: Plants, e.g. information on a specific plant genome including + molecular sequences, genes and annotation. + meaning: edam:topic_0780 + title: Plant biology + edam:topic_0781: + text: edam:topic_0781 + description: Study of viruses, e.g. sequence and structural data, interactions + of viral proteins, or a viral genome including molecular sequences, genes + and annotation. + meaning: edam:topic_0781 + title: Virology + edam:topic_0797: + text: edam:topic_0797 + description: The study (typically comparison) of the sequence, structure or + function of multiple genomes. + meaning: edam:topic_0797 + title: Comparative genomics + edam:topic_0798: + text: edam:topic_0798 + description: Mobile genetic elements, such as transposons, Plasmids, Bacteriophage + elements and Group II introns. + meaning: edam:topic_0798 + title: Mobile genetic elements + edam:topic_0804: + text: edam:topic_0804 + description: The application of information technology to immunology such + as immunological processes, immunological genes, proteins and peptide ligands, + antigens and so on. + meaning: edam:topic_0804 + title: Immunology + edam:topic_0820: + text: edam:topic_0820 + description: Lipoproteins (protein-lipid assemblies), and proteins or region + of a protein that spans or are associated with a membrane. + meaning: edam:topic_0820 + title: Membrane and lipoproteins + edam:topic_0821: + text: edam:topic_0821 + description: Proteins that catalyze chemical reaction, the kinetics of enzyme-catalysed + reactions, enzyme nomenclature etc. + meaning: edam:topic_0821 + title: Enzymes + edam:topic_1317: + text: edam:topic_1317 + description: The molecular structure of biological molecules, particularly + macromolecules such as proteins and nucleic acids. + meaning: edam:topic_1317 + title: Structural biology + edam:topic_1775: + text: edam:topic_1775 + description: The study of gene and protein function including the prediction + of functional properties of a protein. + meaning: edam:topic_1775 + title: Function analysis + edam:topic_2229: + text: edam:topic_2229 + description: Cells, such as key genes and proteins involved in the cell cycle. + meaning: edam:topic_2229 + title: Cell biology + edam:topic_2258: + text: edam:topic_2258 + description: The application of information technology to chemistry in biological + research environment. + meaning: edam:topic_2258 + title: Cheminformatics + edam:topic_2259: + text: edam:topic_2259 + description: The holistic modelling and analysis of complex biological systems + and the interactions therein. + meaning: edam:topic_2259 + title: Systems biology + edam:topic_2269: + text: edam:topic_2269 + description: The application of statistical methods to biological problems. + meaning: edam:topic_2269 + title: Statistics and probability + edam:topic_2275: + text: edam:topic_2275 + description: The construction, analysis, evaluation, refinement etc. of models + of a molecules properties or behaviour, including the modelling the structure + of proteins in complex with small molecules or other macromolecules (docking). + meaning: edam:topic_2275 + title: Molecular modelling + edam:topic_2533: + text: edam:topic_2533 + description: DNA mutation. + meaning: edam:topic_2533 + title: DNA mutation + edam:topic_2640: + text: edam:topic_2640 + description: The study of cancer, for example, genes and proteins implicated + in cancer. + meaning: edam:topic_2640 + title: Oncology + edam:topic_2814: + text: edam:topic_2814 + description: Protein secondary or tertiary structural data and/or associated + annotation. + meaning: edam:topic_2814 + title: Protein structure analysis + edam:topic_2815: + text: edam:topic_2815 + description: The study of human beings in general, including the human genome + and proteome. + meaning: edam:topic_2815 + title: Human biology + edam:topic_2828: + text: edam:topic_2828 + description: The study of matter and their structure by means of the diffraction + of X-rays, typically the diffraction pattern caused by the regularly spaced + atoms of a crystalline sample. + meaning: edam:topic_2828 + title: X-ray diffraction + edam:topic_2830: + text: edam:topic_2830 + description: Immunity-related proteins and their ligands. + meaning: edam:topic_2830 + title: Immunoproteins and antigens + edam:topic_2840: + text: edam:topic_2840 + description: Toxins and the adverse effects of these chemical substances on + living organisms. + meaning: edam:topic_2840 + title: Toxicology + edam:topic_2885: + text: edam:topic_2885 + description: DNA polymorphism. + meaning: edam:topic_2885 + title: DNA polymorphism + edam:topic_3047: + text: edam:topic_3047 + description: The molecular basis of biological activity, particularly the + macromolecules (e.g. proteins and nucleic acids) that are essential to life. + meaning: edam:topic_3047 + title: Molecular biology + edam:topic_3050: + text: edam:topic_3050 + description: The degree of variation of life forms within a given ecosystem, + biome or an entire planet. + meaning: edam:topic_3050 + title: Biodiversity + edam:topic_3053: + text: edam:topic_3053 + description: The study of genes, genetic variation and heredity in living + organisms. + meaning: edam:topic_3053 + title: Genetics + edam:topic_3055: + text: edam:topic_3055 + description: The genes and genetic mechanisms such as Mendelian inheritance + that underly continuous phenotypic traits (such as height or weight). + meaning: edam:topic_3055 + title: Quantitative genetics + edam:topic_3056: + text: edam:topic_3056 + description: The distribution of allele frequencies in a population of organisms + and its change subject to evolutionary processes including natural selection, + genetic drift, mutation and gene flow. + meaning: edam:topic_3056 + title: Population genetics + edam:topic_3063: + text: edam:topic_3063 + description: The application of information technology to health, disease + and biomedicine. + meaning: edam:topic_3063 + title: Medical informatics + edam:topic_3064: + text: edam:topic_3064 + description: How organisms grow and develop. + meaning: edam:topic_3064 + title: Developmental biology + edam:topic_3065: + text: edam:topic_3065 + description: The development of organisms between the one-cell stage (typically + the zygote) and the end of the embryonic stage. + meaning: edam:topic_3065 + title: Embryology + edam:topic_3067: + text: edam:topic_3067 + description: The form and function of the structures of living organisms. + meaning: edam:topic_3067 + title: Anatomy + edam:topic_3068: + text: edam:topic_3068 + description: The scientific literature, language processing, reference information, + and documentation. + meaning: edam:topic_3068 + title: Literature and language + edam:topic_3070: + text: edam:topic_3070 + description: The study of life and living organisms, including their morphology, + biochemistry, physiology, development, evolution, and so on. + meaning: edam:topic_3070 + title: Biology + edam:topic_3071: + text: edam:topic_3071 + description: Data management comprises the practices and principles of taking + care of data, other than analysing them. This includes for example taking + care of the associated metadata, data formats, storage, preservation/archiving, + access, and legal aspects related to using and sharing data. + meaning: edam:topic_3071 + title: Data management + edam:topic_3077: + text: edam:topic_3077 + description: The acquisition of data, typically measurements of physical systems + using any type of sampling system, or by another other means. + meaning: edam:topic_3077 + title: Data acquisition + edam:topic_3120: + text: edam:topic_3120 + description: Protein sequence variants produced e.g. from alternative splicing, + alternative promoter usage, alternative initiation and ribosomal frameshifting. + meaning: edam:topic_3120 + title: Protein variants + edam:topic_3125: + text: edam:topic_3125 + description: Nucleic acids binding to some other molecule. + meaning: edam:topic_3125 + title: DNA binding sites + edam:topic_3127: + text: edam:topic_3127 + description: DNA replication or recombination. + meaning: edam:topic_3127 + title: DNA replication and recombination + edam:topic_3168: + text: edam:topic_3168 + description: The determination of complete (typically nucleotide) sequences, + including those of genomes (full genome sequencing, de novo sequencing and + resequencing), amplicons and transcriptomes. + meaning: edam:topic_3168 + title: Sequencing + edam:topic_3169: + text: edam:topic_3169 + description: The analysis of protein-DNA interactions where chromatin immunoprecipitation + (ChIP) is used in combination with massively parallel DNA sequencing to + identify the binding sites of DNA-associated proteins. + meaning: edam:topic_3169 + title: ChIP-seq + edam:topic_3170: + text: edam:topic_3170 + description: A topic concerning high-throughput sequencing of cDNA to measure + the RNA content (transcriptome) of a sample, for example, to investigate + how different alleles of a gene are expressed, detect post-transcriptional + mutations or identify gene fusions. + meaning: edam:topic_3170 + title: RNA-Seq + edam:topic_3172: + text: edam:topic_3172 + description: The systematic study of metabolites, the chemical processes they + are involved, and the chemical fingerprints of specific cellular processes + in a whole cell, tissue, organ or organism. + meaning: edam:topic_3172 + title: Metabolomics + edam:topic_3173: + text: edam:topic_3173 + description: The study of the epigenetic modifications of a whole cell, tissue, + organism etc. + meaning: edam:topic_3173 + title: Epigenomics + edam:topic_3174: + text: edam:topic_3174 + description: The study of genetic material recovered from environmental samples, + and associated environmental data. + meaning: edam:topic_3174 + title: Metagenomics + edam:topic_3175: + text: edam:topic_3175 + description: Variation in chromosome structure including microscopic and submicroscopic + types of variation such as deletions, duplications, copy-number variants, + insertions, inversions and translocations. + meaning: edam:topic_3175 + title: Structural variation + edam:topic_3176: + text: edam:topic_3176 + description: DNA-histone complexes (chromatin), organisation of chromatin + into nucleosomes and packaging into higher-order structures. + meaning: edam:topic_3176 + title: DNA packaging + edam:topic_3179: + text: edam:topic_3179 + description: Experimental techniques that combine chromatin immunoprecipitation + ('ChIP') with microarray ('chip'). ChIP-on-chip is used for high-throughput + study protein-DNA interactions. + meaning: edam:topic_3179 + title: ChIP-on-chip + edam:topic_3277: + text: edam:topic_3277 + description: Biological samples and specimens. + meaning: edam:topic_3277 + title: Sample collections + edam:topic_3292: + text: edam:topic_3292 + description: Chemical substances and physico-chemical processes and that occur + within living organisms. + meaning: edam:topic_3292 + title: Biochemistry + edam:topic_3293: + text: edam:topic_3293 + description: The study of evolutionary relationships amongst organisms from + analysis of genetic information (typically gene or protein sequences). + meaning: edam:topic_3293 + title: Phylogenetics + edam:topic_3295: + text: edam:topic_3295 + description: Topic concerning the study of heritable changes, for example + in gene expression or phenotype, caused by mechanisms other than changes + in the DNA sequence. + meaning: edam:topic_3295 + title: Epigenetics + edam:topic_3297: + text: edam:topic_3297 + description: The exploitation of biological process, structure and function + for industrial purposes, for example the genetic manipulation of microorganisms + for the antibody production. + meaning: edam:topic_3297 + title: Biotechnology + edam:topic_3298: + text: edam:topic_3298 + description: Phenomes, or the study of the change in phenotype (the physical + and biochemical traits of organisms) in response to genetic and environmental + factors. + meaning: edam:topic_3298 + title: Phenomics + edam:topic_3299: + text: edam:topic_3299 + description: The evolutionary processes, from the genetic to environmental + scale, that produced life in all its diversity. + meaning: edam:topic_3299 + title: Evolutionary biology + edam:topic_3300: + text: edam:topic_3300 + description: The functions of living organisms and their constituent parts. + meaning: edam:topic_3300 + title: Physiology + edam:topic_3301: + text: edam:topic_3301 + description: The biology of microorganisms. + meaning: edam:topic_3301 + title: Microbiology + edam:topic_3302: + text: edam:topic_3302 + description: The biology of parasites. + meaning: edam:topic_3302 + title: Parasitology + edam:topic_3303: + text: edam:topic_3303 + description: Research in support of healing by diagnosis, treatment, and prevention + of disease. + meaning: edam:topic_3303 + title: Medicine + edam:topic_3304: + text: edam:topic_3304 + description: The study of the nervous system and brain; its anatomy, physiology + and function. + meaning: edam:topic_3304 + title: Neurobiology + edam:topic_3305: + text: edam:topic_3305 + description: Topic concerning the the patterns, cause, and effect of disease + within populations. + meaning: edam:topic_3305 + title: Public health and epidemiology + edam:topic_3306: + text: edam:topic_3306 + description: The use of physics to study biological system. + meaning: edam:topic_3306 + title: Biophysics + edam:topic_3307: + text: edam:topic_3307 + description: The development and application of theory, analytical methods, + mathematical models and computational simulation of biological systems. + meaning: edam:topic_3307 + title: Computational biology + edam:topic_3308: + text: edam:topic_3308 + description: The analysis of transcriptomes, or a set of all the RNA molecules + in a specific cell, tissue etc. + meaning: edam:topic_3308 + title: Transcriptomics + edam:topic_3314: + text: edam:topic_3314 + description: The composition and properties of matter, reactions, and the + use of reactions to create new substances. + meaning: edam:topic_3314 + title: Chemistry + edam:topic_3315: + text: edam:topic_3315 + description: The study of numbers (quantity) and other topics including structure, + space, and change. + meaning: edam:topic_3315 + title: Mathematics + edam:topic_3316: + text: edam:topic_3316 + description: The theory and practical use of computer systems. + meaning: edam:topic_3316 + title: Computer science + edam:topic_3318: + text: edam:topic_3318 + description: The study of matter, space and time, and related concepts such + as energy and force. + meaning: edam:topic_3318 + title: Physics + edam:topic_3320: + text: edam:topic_3320 + description: RNA splicing; post-transcription RNA modification involving the + removal of introns and joining of exons. + meaning: edam:topic_3320 + title: RNA splicing + edam:topic_3321: + text: edam:topic_3321 + description: The structure and function of genes at a molecular level. + meaning: edam:topic_3321 + title: Molecular genetics + edam:topic_3322: + text: edam:topic_3322 + description: The study of respiratory system. + meaning: edam:topic_3322 + title: Respiratory medicine + edam:topic_3324: + text: edam:topic_3324 + description: The branch of medicine that deals with the prevention, diagnosis + and management of transmissible disease with clinically evident illness + resulting from infection with pathogenic biological agents (viruses, bacteria, + fungi, protozoa, parasites and prions). + meaning: edam:topic_3324 + title: Infectious disease + edam:topic_3325: + text: edam:topic_3325 + description: The study of rare diseases. + meaning: edam:topic_3325 + title: Rare diseases + edam:topic_3332: + text: edam:topic_3332 + description: Topic concerning the development and application of theory, analytical + methods, mathematical models and computational simulation of chemical systems. + meaning: edam:topic_3332 + title: Computational chemistry + edam:topic_3334: + text: edam:topic_3334 + description: The branch of medicine that deals with the anatomy, functions + and disorders of the nervous system. + meaning: edam:topic_3334 + title: Neurology + edam:topic_3335: + text: edam:topic_3335 + description: The diseases and abnormalities of the heart and circulatory system. + meaning: edam:topic_3335 + title: Cardiology + edam:topic_3336: + text: edam:topic_3336 + description: The discovery and design of drugs or potential drug compounds. + meaning: edam:topic_3336 + title: Drug discovery + edam:topic_3337: + text: edam:topic_3337 + description: Repositories of biological samples, typically human, for basic + biological and clinical research. + meaning: edam:topic_3337 + title: Biobank + edam:topic_3338: + text: edam:topic_3338 + description: Laboratory study of mice, for example, phenotyping, and mutagenesis + of mouse cell lines. + meaning: edam:topic_3338 + title: Mouse clinic + edam:topic_3339: + text: edam:topic_3339 + description: Collections of microbial cells including bacteria, yeasts and + moulds. + meaning: edam:topic_3339 + title: Microbial collection + edam:topic_3340: + text: edam:topic_3340 + description: Collections of cells grown under laboratory conditions, specifically, + cells from multi-cellular eukaryotes and especially animal cells. + meaning: edam:topic_3340 + title: Cell culture collection + edam:topic_3341: + text: edam:topic_3341 + description: Collections of DNA, including both collections of cloned molecules, + and populations of micro-organisms that store and propagate cloned DNA. + meaning: edam:topic_3341 + title: Clone library + edam:topic_3342: + text: edam:topic_3342 + description: '''translating'' the output of basic and biomedical research + into better diagnostic tools, medicines, medical procedures, policies and + advice.' + meaning: edam:topic_3342 + title: Translational medicine + edam:topic_3343: + text: edam:topic_3343 + description: Collections of chemicals, typically for use in high-throughput + screening experiments. + meaning: edam:topic_3343 + title: Compound libraries and screening + edam:topic_3344: + text: edam:topic_3344 + description: Topic concerning biological science that is (typically) performed + in the context of medicine. + meaning: edam:topic_3344 + title: Biomedical science + edam:topic_3345: + text: edam:topic_3345 + description: Topic concerning the identity of biological entities, or reports + on such entities, and the mapping of entities and records in different databases. + meaning: edam:topic_3345 + title: Data identity and mapping + edam:topic_3360: + text: edam:topic_3360 + description: Objective indicators of biological state often used to assess + health, and determinate treatment. + meaning: edam:topic_3360 + title: Biomarkers + edam:topic_3365: + text: edam:topic_3365 + description: The development of policies, models and standards that cover + data acquisition, storage and integration, such that it can be put to use, + typically through a process of systematically applying statistical and / + or logical techniques to describe, illustrate, summarise or evaluate data. + meaning: edam:topic_3365 + title: Data architecture, analysis and design + edam:topic_3366: + text: edam:topic_3366 + description: The combination and integration of data from different sources, + for example into a central repository or warehouse, to provide users with + a unified view of these data. + meaning: edam:topic_3366 + title: Data integration and warehousing + edam:topic_3368: + text: edam:topic_3368 + description: Any matter, surface or construct that interacts with a biological + system. + meaning: edam:topic_3368 + title: Biomaterials + edam:topic_3369: + text: edam:topic_3369 + description: The use of synthetic chemistry to study and manipulate biological + systems. + meaning: edam:topic_3369 + title: Chemical biology + edam:topic_3370: + text: edam:topic_3370 + description: The study of the separation, identification, and quantification + of the chemical components of natural and artificial materials. + meaning: edam:topic_3370 + title: Analytical chemistry + edam:topic_3371: + text: edam:topic_3371 + description: The use of chemistry to create new compounds. + meaning: edam:topic_3371 + title: Synthetic chemistry + edam:topic_3372: + text: edam:topic_3372 + description: The process that leads from an original formulation of a computing + problem to executable programs. + meaning: edam:topic_3372 + title: Software engineering + edam:topic_3373: + text: edam:topic_3373 + description: The process of bringing a new drug to market once a lead compounds + has been identified through drug discovery. + meaning: edam:topic_3373 + title: Drug development + edam:topic_3374: + text: edam:topic_3374 + description: The process of formulating and administering a pharmaceutical + compound to achieve a therapeutic effect. + meaning: edam:topic_3374 + title: Biotherapeutics + edam:topic_3375: + text: edam:topic_3375 + description: The study of how a drug interacts with the body. + meaning: edam:topic_3375 + title: Drug metabolism + edam:topic_3376: + text: edam:topic_3376 + description: The discovery, development and approval of medicines. + meaning: edam:topic_3376 + title: Medicines research and development + edam:topic_3377: + text: edam:topic_3377 + description: The safety (or lack) of drugs and other medical interventions. + meaning: edam:topic_3377 + title: Safety sciences + edam:topic_3378: + text: edam:topic_3378 + description: The detection, assessment, understanding and prevention of adverse + effects of medicines. + meaning: edam:topic_3378 + title: Pharmacovigilance + edam:topic_3379: + text: edam:topic_3379 + description: The testing of new medicines, vaccines or procedures on animals + (preclinical) and humans (clinical) prior to their approval by regulatory + authorities. + meaning: edam:topic_3379 + title: Preclinical and clinical studies + edam:topic_3382: + text: edam:topic_3382 + description: The visual representation of an object. + meaning: edam:topic_3382 + title: Imaging + edam:topic_3383: + text: edam:topic_3383 + description: The use of imaging techniques to understand biology. + meaning: edam:topic_3383 + title: Bioimaging + edam:topic_3384: + text: edam:topic_3384 + description: The use of imaging techniques for clinical purposes for medical + research. + meaning: edam:topic_3384 + title: Medical imaging + edam:topic_3385: + text: edam:topic_3385 + description: The use of optical instruments to magnify the image of an object. + meaning: edam:topic_3385 + title: Light microscopy + edam:topic_3386: + text: edam:topic_3386 + description: The use of animals and alternatives in experimental research. + meaning: edam:topic_3386 + title: Laboratory animal science + edam:topic_3387: + text: edam:topic_3387 + description: The study of organisms in the ocean or brackish waters. + meaning: edam:topic_3387 + title: Marine biology + edam:topic_3388: + text: edam:topic_3388 + description: The identification of molecular and genetic causes of disease + and the development of interventions to correct them. + meaning: edam:topic_3388 + title: Molecular medicine + edam:topic_3390: + text: edam:topic_3390 + description: The study of the effects of food components on the metabolism, + health, performance and disease resistance of humans and animals. It also + includes the study of human behaviours related to food choices. + meaning: edam:topic_3390 + title: Nutritional science + edam:topic_3391: + text: edam:topic_3391 + description: The collective characterisation and quantification of pools of + biological molecules that translate into the structure, function, and dynamics + of an organism or organisms. + meaning: edam:topic_3391 + title: Omics + edam:topic_3393: + text: edam:topic_3393 + description: The processes that need to be in place to ensure the quality + of products for human or animal use. + meaning: edam:topic_3393 + title: Quality affairs + edam:topic_3394: + text: edam:topic_3394 + description: The protection of public health by controlling the safety and + efficacy of products in areas including pharmaceuticals, veterinary medicine, + medical devices, pesticides, agrochemicals, cosmetics, and complementary + medicines. + meaning: edam:topic_3394 + title: Regulatory affairs + edam:topic_3395: + text: edam:topic_3395 + description: Biomedical approaches to clinical interventions that involve + the use of stem cells. + meaning: edam:topic_3395 + title: Regenerative medicine + edam:topic_3396: + text: edam:topic_3396 + description: An interdisciplinary field of study that looks at the dynamic + systems of the human body as part of an integrted whole, incorporating biochemical, + physiological, and environmental interactions that sustain life. + meaning: edam:topic_3396 + title: Systems medicine + edam:topic_3397: + text: edam:topic_3397 + description: Topic concerning the branch of medicine that deals with the prevention, + diagnosis, and treatment of disease, disorder and injury in animals. + meaning: edam:topic_3397 + title: Veterinary medicine + edam:topic_3398: + text: edam:topic_3398 + description: The application of biological concepts and methods to the analytical + and synthetic methodologies of engineering. + meaning: edam:topic_3398 + title: Bioengineering + edam:topic_3399: + text: edam:topic_3399 + description: The branch of medicine dealing with the diagnosis, treatment + and prevention of disease in older people, and the problems specific to + aging. + meaning: edam:topic_3399 + title: Geriatric medicine + edam:topic_3400: + text: edam:topic_3400 + description: Health issues related to the immune system and their prevention, + diagnosis and management. + meaning: edam:topic_3400 + title: Allergy, clinical immunology and immunotherapeutics + edam:topic_3401: + text: edam:topic_3401 + description: The prevention of pain and the evaluation, treatment and rehabilitation + of persons in pain. + meaning: edam:topic_3401 + title: Pain medicine + edam:topic_3402: + text: edam:topic_3402 + description: Anaesthesia and anaesthetics. + meaning: edam:topic_3402 + title: Anaesthesiology + edam:topic_3403: + text: edam:topic_3403 + description: The multidisciplinary that cares for patients with acute, life-threatening + illness or injury. + meaning: edam:topic_3403 + title: Critical care medicine + edam:topic_3404: + text: edam:topic_3404 + description: The branch of medicine that deals with prevention, diagnosis + and treatment of disorders of the skin, scalp, hair and nails. + meaning: edam:topic_3404 + title: Dermatology + edam:topic_3405: + text: edam:topic_3405 + description: The study, diagnosis, prevention and treatments of disorders + of the oral cavity, maxillofacial area and adjacent structures. + meaning: edam:topic_3405 + title: Dentistry + edam:topic_3406: + text: edam:topic_3406 + description: The branch of medicine that deals with the prevention, diagnosis, + and treatment of disorders of the ear, nose and throat. + meaning: edam:topic_3406 + title: Ear, nose and throat medicine + edam:topic_3407: + text: edam:topic_3407 + description: The branch of medicine dealing with diseases of endocrine organs, + hormone systems, their target organs, and disorders of the pathways of glucose + and lipid metabolism. + meaning: edam:topic_3407 + title: Endocrinology and metabolism + edam:topic_3408: + text: edam:topic_3408 + description: The branch of medicine that deals with the blood, blood-forming + organs and blood diseases. + meaning: edam:topic_3408 + title: Haematology + edam:topic_3409: + text: edam:topic_3409 + description: The branch of medicine that deals with disorders of the oesophagus, + stomach, duodenum, jejenum, ileum, large intestine, sigmoid colon and rectum. + meaning: edam:topic_3409 + title: Gastroenterology + edam:topic_3410: + text: edam:topic_3410 + description: The study of the biological and physiological differences between + males and females and how they effect differences in disease presentation + and management. + meaning: edam:topic_3410 + title: Gender medicine + edam:topic_3411: + text: edam:topic_3411 + description: The branch of medicine that deals with the health of the female + reproductive system, pregnancy and birth. + meaning: edam:topic_3411 + title: Gynaecology and obstetrics + edam:topic_3412: + text: edam:topic_3412 + description: The branch of medicine that deals with the liver, gallbladder, + bile ducts and bile. + meaning: edam:topic_3412 + title: Hepatic and biliary medicine + edam:topic_3414: + text: edam:topic_3414 + description: The branch of medicine that treats body wounds or shock produced + by sudden physical injury, as from violence or accident. + meaning: edam:topic_3414 + title: Trauma medicine + edam:topic_3415: + text: edam:topic_3415 + description: The branch of medicine that deals with the diagnosis, management + and prevention of poisoning and other adverse health effects caused by medications, + occupational and environmental toxins, and biological agents. + meaning: edam:topic_3415 + title: Medical toxicology + edam:topic_3416: + text: edam:topic_3416 + description: The branch of medicine that deals with the prevention, diagnosis, + and treatment of disorders of the muscle, bone and connective tissue. It + incorporates aspects of orthopaedics, rheumatology, rehabilitation medicine + and pain medicine. + meaning: edam:topic_3416 + title: Musculoskeletal medicine + edam:topic_3417: + text: edam:topic_3417 + description: The branch of medicine that deals with disorders of the eye, + including eyelid, optic nerve/visual pathways and occular muscles. + meaning: edam:topic_3417 + title: Ophthalmology + edam:topic_3418: + text: edam:topic_3418 + description: The branch of medicine that deals with the medical care of infants, + children and adolescents. + meaning: edam:topic_3418 + title: Paediatrics + edam:topic_3419: + text: edam:topic_3419 + description: The branch of medicine that deals with the management of mental + illness, emotional disturbance and abnormal behaviour. + meaning: edam:topic_3419 + title: Psychiatry + edam:topic_3420: + text: edam:topic_3420 + description: The health of the reproductive processes, functions and systems + at all stages of life. + meaning: edam:topic_3420 + title: Reproductive health + edam:topic_3421: + text: edam:topic_3421 + description: The use of operative, manual and instrumental techniques on a + patient to investigate and/or treat a pathological condition or help improve + bodily function or appearance. + meaning: edam:topic_3421 + title: Surgery + edam:topic_3422: + text: edam:topic_3422 + description: The branches of medicine and physiology focussing on the function + and disorders of the urinary system in males and females, the reproductive + system in males, and the kidney. + meaning: edam:topic_3422 + title: Urology and nephrology + edam:topic_3423: + text: edam:topic_3423 + description: Medical therapies that fall beyond the scope of conventional + medicine but may be used alongside it in the treatment of disease and ill + health. + meaning: edam:topic_3423 + title: Complementary medicine + edam:topic_3444: + text: edam:topic_3444 + description: Techniques that uses magnetic fields and radiowaves to form images, + typically to investigate the anatomy and physiology of the human body. + meaning: edam:topic_3444 + title: MRI + edam:topic_3448: + text: edam:topic_3448 + description: The study of matter by studying the diffraction pattern from + firing neutrons at a sample, typically to determine atomic and/or magnetic + structure. + meaning: edam:topic_3448 + title: Neutron diffraction + edam:topic_3452: + text: edam:topic_3452 + description: Imaging in sections (sectioning), through the use of a wave-generating + device (tomograph) that generates an image (a tomogram). + meaning: edam:topic_3452 + title: Tomography + edam:topic_3473: + text: edam:topic_3473 + description: The discovery of patterns in large data sets and the extraction + and trasnsformation of those patterns into a useful format. + meaning: edam:topic_3473 + title: Data mining + edam:topic_3474: + text: edam:topic_3474 + description: A topic concerning the application of artificial intelligence + methods to algorithms, in order to create methods that can learn from data + in order to generate an output, rather than relying on explicitly encoded + information only. + meaning: edam:topic_3474 + title: Machine learning + edam:topic_3489: + text: edam:topic_3489 + description: The general handling of data stored in digital archives such + as databases, databanks, web portals, and other data resources. + meaning: edam:topic_3489 + title: Database management + edam:topic_3500: + text: edam:topic_3500 + description: Animals, e.g. information on a specific animal genome including + molecular sequences, genes and annotation. + meaning: edam:topic_3500 + title: Zoology + edam:topic_3510: + text: edam:topic_3510 + description: The biology, archival, detection, prediction and analysis of + positional features such as functional and other key sites, in protein sequences + and the conserved patterns (motifs, profiles etc.) that may be used to describe + them. + meaning: edam:topic_3510 + title: Protein sites, features and motifs + edam:topic_3511: + text: edam:topic_3511 + description: The biology, archival, detection, prediction and analysis of + positional features such as functional and other key sites, in nucleic acid + sequences and the conserved patterns (motifs, profiles etc.) that may be + used to describe them. + meaning: edam:topic_3511 + title: Nucleic acid sites, features and motifs + edam:topic_3512: + text: edam:topic_3512 + description: Transcription of DNA into RNA and features of a messenger RNA + (mRNA) molecules including precursor RNA, primary (unprocessed) transcript + and fully processed molecules. + meaning: edam:topic_3512 + title: Gene transcripts + edam:topic_3516: + text: edam:topic_3516 + description: Genotype experiment including case control, population, and family + studies. These might use array based methods and re-sequencing methods. + meaning: edam:topic_3516 + title: Genotyping experiment + edam:topic_3517: + text: edam:topic_3517 + description: Genome-wide association study experiments. + meaning: edam:topic_3517 + title: GWAS study + edam:topic_3518: + text: edam:topic_3518 + description: Microarray experiments including conditions, protocol, sample:data + relationships etc. + meaning: edam:topic_3518 + title: Microarray experiment + edam:topic_3519: + text: edam:topic_3519 + description: PCR experiments, e.g. quantitative real-time PCR. + meaning: edam:topic_3519 + title: PCR experiment + edam:topic_3520: + text: edam:topic_3520 + description: Proteomics experiments. + meaning: edam:topic_3520 + title: Proteomics experiment + edam:topic_3523: + text: edam:topic_3523 + description: Experiment in which the expression of a specific gene is post-transcriptionally + knocked down or silenced by means of a small RNA (sRNA) causing the degradation + of the gene transcript (mRNA), and thus preventing the production of the + corresponding protein. + meaning: edam:topic_3523 + title: RNAi experiment + edam:topic_3524: + text: edam:topic_3524 + description: Biological computational model experiments (simulation), for + example the minimum information required in order to permit its correct + interpretation and reproduction. + meaning: edam:topic_3524 + title: Simulation experiment + edam:topic_3534: + text: edam:topic_3534 + description: Binding sites in proteins, including cleavage sites (for a proteolytic + enzyme or agent), key residues involved in protein folding, catalytic residues + (active site) of an enzyme, ligand-binding (non-catalytic) residues of a + protein, such as sites that bind metal, prosthetic groups or lipids, RNA + and DNA-binding proteins and binding sites etc. + meaning: edam:topic_3534 + title: Protein binding sites + edam:topic_3538: + text: edam:topic_3538 + description: Disordered structure in a protein. + meaning: edam:topic_3538 + title: Protein disordered structure + edam:topic_3542: + text: edam:topic_3542 + description: Secondary structure (predicted or real) of a protein, including + super-secondary structure. + meaning: edam:topic_3542 + title: Protein secondary structure + edam:topic_3569: + text: edam:topic_3569 + description: The application of mathematics to specific problems in science, + typically by the formulation and analysis of mathematical models. + meaning: edam:topic_3569 + title: Applied mathematics + edam:topic_3570: + text: edam:topic_3570 + description: The study of abstract mathematical concepts. + meaning: edam:topic_3570 + title: Pure mathematics + edam:topic_3571: + text: edam:topic_3571 + description: Data governance is the control of data entry and maintenance + to ensure the data meets defined standards, qualities, or constraints. + meaning: edam:topic_3571 + title: Data governance + edam:topic_3572: + text: edam:topic_3572 + description: The quality, integrity, and cleaning up of data. + meaning: edam:topic_3572 + title: Data quality management + edam:topic_3573: + text: edam:topic_3573 + description: The study of organisms in freshwater ecosystems. + meaning: edam:topic_3573 + title: Freshwater biology + edam:topic_3574: + text: edam:topic_3574 + description: The study of inheritance in human beings. + meaning: edam:topic_3574 + title: Human genetics + edam:topic_3575: + text: edam:topic_3575 + description: Health problems that are prevalent in tropical and subtropical + regions. + meaning: edam:topic_3575 + title: Tropical medicine + edam:topic_3576: + text: edam:topic_3576 + description: Biotechnology applied to the medical sciences and the development + of medicines. + meaning: edam:topic_3576 + title: Medical biotechnology + edam:topic_3577: + text: edam:topic_3577 + description: An approach to medicine whereby decisions, practices and are + tailored to the individual patient based on their predicted response or + risk of disease. + meaning: edam:topic_3577 + title: Personalised medicine + edam:topic_3656: + text: edam:topic_3656 + description: Experimental techniques to purify a protein-DNA crosslinked complex. + Usually sequencing follows e.g. in the techniques ChIP-chip, ChIP-seq and + MeDIP-seq. + meaning: edam:topic_3656 + title: Immunoprecipitation experiment + edam:topic_3673: + text: edam:topic_3673 + description: Laboratory technique to sequence the complete DNA sequence of + an organism's genome at a single time. + meaning: edam:topic_3673 + title: Whole genome sequencing + edam:topic_3674: + text: edam:topic_3674 + description: Laboratory technique to sequence the methylated regions in DNA. + meaning: edam:topic_3674 + title: Methylated DNA immunoprecipitation + edam:topic_3676: + text: edam:topic_3676 + description: Laboratory technique to sequence all the protein-coding regions + in a genome, i.e., the exome. + meaning: edam:topic_3676 + title: Exome sequencing + edam:topic_3678: + text: edam:topic_3678 + description: The design of an experiment intended to test a hypothesis, and + describe or explain empirical data obtained under various experimental conditions. + meaning: edam:topic_3678 + title: Experimental design and studies + edam:topic_3679: + text: edam:topic_3679 + description: The design of an experiment involving non-human animals. + meaning: edam:topic_3679 + title: Animal study + edam:topic_3697: + text: edam:topic_3697 + description: The ecology of microorganisms including their relationship with + one another and their environment. + meaning: edam:topic_3697 + title: Microbial ecology + edam:topic_3794: + text: edam:topic_3794 + description: An antibody-based technique used to map in vivo RNA-protein interactions. + meaning: edam:topic_3794 + title: RNA immunoprecipitation + edam:topic_3796: + text: edam:topic_3796 + description: Large-scale study (typically comparison) of DNA sequences of + populations. + meaning: edam:topic_3796 + title: Population genomics + edam:topic_3810: + text: edam:topic_3810 + description: Multidisciplinary study, research and development within the + field of agriculture. + meaning: edam:topic_3810 + title: Agricultural science + edam:topic_3837: + text: edam:topic_3837 + description: Approach which samples, in parallel, all genes in all organisms + present in a given sample, e.g. to provide insight into biodiversity and + function. + meaning: edam:topic_3837 + title: Metagenomic sequencing + edam:topic_3855: + text: edam:topic_3855 + description: Study of the environment, the interactions between its physical, + chemical, and biological components and it's effect on life. Also how humans + impact upon the environment, and how we can manage and utilise natural resources. + meaning: edam:topic_3855 + title: Environmental sciences + edam:topic_3892: + text: edam:topic_3892 + description: The study and simulation of molecular conformations using a computational + model and computer simulations. + meaning: edam:topic_3892 + title: Biomolecular simulation + edam:topic_3895: + text: edam:topic_3895 + description: The application of multi-disciplinary science and technology + for the construction of artificial biological systems for diverse applications. + meaning: edam:topic_3895 + title: Synthetic biology + edam:topic_3912: + text: edam:topic_3912 + description: The application of biotechnology to directly manipulate an organism's + genes. + meaning: edam:topic_3912 + title: Genetic engineering + edam:topic_3922: + text: edam:topic_3922 + description: A field of biological research focused on the discovery and identification + of peptides, typically by comparing mass spectra against a protein database. + meaning: edam:topic_3922 + title: Proteogenomics + edam:topic_3923: + text: edam:topic_3923 + description: Laboratory experiment to identify the differences between a specific + genome (of an individual) and a reference genome (developed typically from + many thousands of individuals). WGS re-sequencing is used as golden standard + to detect variations compared to a given reference genome, including small + variants (SNP and InDels) as well as larger genome re-organisations (CNVs, + translocations, etc.). + meaning: edam:topic_3923 + title: Genome resequencing + edam:topic_3930: + text: edam:topic_3930 + description: A biomedical field that bridges immunology and genetics, to study + the genetic basis of the immune system. + meaning: edam:topic_3930 + title: Immunogenetics + edam:topic_3931: + text: edam:topic_3931 + description: Interdisciplinary science focused on extracting information from + chemical systems by data analytical approaches, for example multivariate + statistics, applied mathematics, and computer science. + meaning: edam:topic_3931 + title: Chemometrics + edam:topic_3934: + text: edam:topic_3934 + description: Cytometry is the measurement of the characteristics of cells. + meaning: edam:topic_3934 + title: Cytometry + edam:topic_3939: + text: edam:topic_3939 + description: Biotechnology approach that seeks to optimize cellular genetic + and regulatory processes in order to increase the cells' production of a + certain substance. + meaning: edam:topic_3939 + title: Metabolic engineering + edam:topic_3940: + text: edam:topic_3940 + description: Molecular biology methods used to analyze the spatial organization + of chromatin in a cell. + meaning: edam:topic_3940 + title: Chromosome conformation capture + edam:topic_3941: + text: edam:topic_3941 + description: The study of microbe gene expression within natural environments + (i.e. the metatranscriptome). + meaning: edam:topic_3941 + title: Metatranscriptomics + edam:topic_3943: + text: edam:topic_3943 + description: The reconstruction and analysis of genomic information in extinct + species. + meaning: edam:topic_3943 + title: Paleogenomics + edam:topic_3944: + text: edam:topic_3944 + description: The biological classification of organisms by categorizing them + in groups ("clades") based on their most recent common ancestor. + meaning: edam:topic_3944 + title: Cladistics + edam:topic_3945: + text: edam:topic_3945 + description: The study of the process and mechanism of change of biomolecules + such as DNA, RNA, and proteins across generations. + meaning: edam:topic_3945 + title: Molecular evolution + edam:topic_3948: + text: edam:topic_3948 + description: Immunoinformatics is the field of computational biology that + deals with the study of immunoloogical questions. Immunoinformatics is at + the interface between immunology and computer science. It takes advantage + of computational, statistical, mathematical approaches and enhances the + understanding of immunological knowledge. + meaning: edam:topic_3948 + title: Immunoinformatics + edam:topic_3954: + text: edam:topic_3954 + description: A diagnostic imaging technique based on the application of ultrasound. + meaning: edam:topic_3954 + title: Echography + edam:topic_3955: + text: edam:topic_3955 + description: Experimental approaches to determine the rates of metabolic reactions + - the metabolic fluxes - within a biological entity. + meaning: edam:topic_3955 + title: Fluxomics + edam:topic_3957: + text: edam:topic_3957 + description: An experiment for studying protein-protein interactions. + meaning: edam:topic_3957 + title: Protein interaction experiment + edam:topic_3958: + text: edam:topic_3958 + description: A DNA structural variation, specifically a duplication or deletion + event, resulting in sections of the genome to be repeated, or the number + of repeats in the genome to vary between individuals. + meaning: edam:topic_3958 + title: Copy number variation + edam:topic_3959: + text: edam:topic_3959 + description: The branch of genetics concerned with the relationships between + chromosomes and cellular behaviour, especially during mitosis and meiosis. + meaning: edam:topic_3959 + title: Cytogenetics + edam:topic_3966: + text: edam:topic_3966 + description: The design of vaccines to protect against a particular pathogen, + including antigens, delivery systems, and adjuvants to elicit a predictable + immune response against specific epitopes. + meaning: edam:topic_3966 + title: Vaccinology + edam:topic_3967: + text: edam:topic_3967 + description: The study of immune system as a whole, its regulation and response + to pathogens using genome-wide approaches. + meaning: edam:topic_3967 + title: Immunomics + edam:topic_3974: + text: edam:topic_3974 + description: 'Epistasis can be defined as the ability of the genotype at one + locus to supersede the phenotypic effect of a mutation at another locus. + This interaction between genes can occur at different level: gene expression, + protein levels, etc...' + meaning: edam:topic_3974 + title: Epistasis + edam:topic_4010: + text: edam:topic_4010 + description: Open science encompasses the practices of making scientific research + transparent and participatory, and its outputs publicly accessible. + meaning: edam:topic_4010 + title: Open science + edam:topic_4011: + text: edam:topic_4011 + description: Data rescue denotes digitalisation, formatting, archival, and + publication of data that were not available in accessible or usable form. + Examples are data from private archives, data inside publications, or in + paper records stored privately or publicly. + meaning: edam:topic_4011 + title: Data rescue + edam:topic_4012: + text: edam:topic_4012 + description: FAIR data is scientific data that meets the principles of being + findable, accessible, interoperable, and reusable. + meaning: edam:topic_4012 + title: FAIR data + edam:topic_4013: + text: edam:topic_4013 + description: Microbial mechanisms for protecting microorganisms against antimicrobial + agents. + meaning: edam:topic_4013 + title: Antimicrobial resistance + edam:topic_4014: + text: edam:topic_4014 + description: The monitoring method for measuring electrical activity in the + brain. + meaning: edam:topic_4014 + title: Electroencephalography + edam:topic_4016: + text: edam:topic_4016 + description: The monitoring method for measuring electrical activity in the + heart. + meaning: edam:topic_4016 + title: Electrocardiography + edam:topic_4017: + text: edam:topic_4017 + description: A method for studying biomolecules and other structures at very + low (cryogenic) temperature using electron microscopy. + meaning: edam:topic_4017 + title: Cryogenic electron microscopy + edam:topic_4019: + text: edam:topic_4019 + description: Biosciences, or life sciences, include fields of study related + to life, living beings, and biomolecules. + meaning: edam:topic_4019 + title: Biosciences + edam:topic_4020: + text: edam:topic_4020 + description: The carbon cycle is the biogeochemical pathway of carbon moving + through the different parts of the Earth (such as ocean, atmosphere, soil), + or eventually another planet. + meaning: edam:topic_4020 + title: Carbon cycle + edam:topic_4021: + text: edam:topic_4021 + description: Multiomics concerns integration of data from multiple omics (e.g. + transcriptomics, proteomics, epigenomics). + meaning: edam:topic_4021 + title: Multiomics + edam:topic_4027: + text: edam:topic_4027 + description: With ribosome profiling, ribosome-protected mRNA fragments are + analyzed with RNA-seq techniques leading to a genome-wide measurement of + the translation landscape. + meaning: edam:topic_4027 + title: Ribosome Profiling + edam:topic_4028: + text: edam:topic_4028 + description: Combined with NGS (Next Generation Sequencing) technologies, + single-cell sequencing allows the study of genetic information (DNA, RNA, + epigenome...) at a single cell level. It is often used for differential + analysis and gene expression profiling. + meaning: edam:topic_4028 + title: Single-cell sequencing + edam:topic_4029: + text: edam:topic_4029 + description: The study of mechanical waves in liquids, solids, and gases. + meaning: edam:topic_4029 + title: Acoustics + edam:topic_4030: + text: edam:topic_4030 + description: Interdisplinary study of behavior, precise control, and manipulation + of low (microlitre) volume fluids in constrained space. + meaning: edam:topic_4030 + title: Microfluidics + edam:topic_4037: + text: edam:topic_4037 + description: Genomic imprinting is a gene regulation mechanism by which a + subset of genes are expressed from one of the two parental chromosomes only. + Imprinted genes are organized in clusters, their silencing/activation of + the imprinted loci involves epigenetic marks (DNA methylation, etc) and + so-called imprinting control regions (ICR). It has been described in mammals, + but also plants and insects. + meaning: edam:topic_4037 + title: Genomic imprinting + edam:topic_4038: + text: edam:topic_4038 + description: Metabarcoding is the barcoding of (environmental) DNA or RNA + to identify multiple taxa from the same sample. + meaning: edam:topic_4038 + title: Metabarcoding + edam:topic_4044: + text: edam:topic_4044 + description: Data protection is a topic concerning data that should be protected + from disclosure, damage, or unauthorised access, due to its sensitive nature. + meaning: edam:topic_4044 + title: Data protection + edam:topic_4045: + text: edam:topic_4045 + description: Cybersecurity is a topic comprising the approaches and technologies + that enable the protection of computer systems, networks and programs from + digital attacks. It ensures the availability, integrity, and confidentiality + of processed and stored information. + meaning: edam:topic_4045 + title: Cybersecurity + edam:topic_4046: + text: edam:topic_4046 + description: Version control is a technology for consistent management, storing, + and sharing of evolving versions of digital artefacts, such as computer + programs, scripts, documents, data, or media files. + meaning: edam:topic_4046 + title: Version control + edam:topic_4047: + text: edam:topic_4047 + description: Software management comprises the practices and principles of + taking care of software and software-based or software-like services, other + than programming and maintenance. This includes for example taking care + of the associated information and documentation, and the processes of contribution, + validation, release/publication, or deployment. + meaning: edam:topic_4047 + title: Software management + edam:topic_4051: + text: edam:topic_4051 + description: Chromatin immunoprecipitation-based exeperiment similar to ChIP-seq, + with an additional experimental step using an exonuclease to increase the + resolution of protein binding site identification. + meaning: edam:topic_4051 + title: ChIP-exo + edam:topic_4052: + text: edam:topic_4052 + description: High-throughput genomic and epigenomic technique that capture + chromatin conformation, allowing a genome-wide identification of chromatin + interactions and structure. + meaning: edam:topic_4052 + title: Hi-C + edam:topic_4053: + text: edam:topic_4053 + description: Assay for Transposase-Accessible Chromatin with high throughput + sequencing. This technique is designed for the genome-wide detection of + open chromatin regions. + meaning: edam:topic_4053 + title: ATAC-seq + edam:topic_4054: + text: edam:topic_4054 + description: Experiment in which the expression of a given gene is knocked + down by means of a micro RNA (miRNA) causing the degradation of the gene + transcript (mRNA). + meaning: edam:topic_4054 + title: miRNA silencing + edam:topic_4055: + text: edam:topic_4055 + description: Experiment in which the expression of a given gene is knocked + down by means of a small interfering RNA (siRNA) causing the degradation + of the gene transcript (mRNA). + meaning: edam:topic_4055 + title: siRNA experiment + edam:topic_4056: + text: edam:topic_4056 + description: Long-read sequencing is a sequencing method that produces reads + thousands to millions of base pairs long, allowing for better resolution + of complex regions, structural variants, and full-length transcripts. + meaning: edam:topic_4056 + title: Long-read sequencing + edam:topic_4057: + text: edam:topic_4057 + description: Short-read sequencing is a high-throughput sequencing method + that generates millions of short nucleotide fragments, typically 50–300 + base pairs in length. + meaning: edam:topic_4057 + title: Short-read sequencing + edam:topic_4060: + text: edam:topic_4060 + description: Metaproteomics is the profiling of proteins in a sample that + contains material from multiple species or strains of organisms. + meaning: edam:topic_4060 + title: Metaproteomics + edam:topic_4061: + text: edam:topic_4061 + description: Bisulfite sequencing is a sequencing technique used to determine + DNA methylation patterns by treating DNA with bisulfite, which converts + unmethylated cytosines to uracils while leaving methylated cytosines unchanged. + meaning: edam:topic_4061 + title: Bisulfite sequencing + edam:topic_4062: + text: edam:topic_4062 + description: Bulk RNA barcoding and sequencing (BRB-seq) is a highly mutliplexed + bulk RNA-Seq technique where each RNA sample gets a barcode, and many samples + are sequenced together. + meaning: edam:topic_4062 + title: Bulk RNA barcoding and sequencing + edam:topic_4063: + text: edam:topic_4063 + description: DNase sequencing is a technique used to identify regions of open + chromatin by sequencing DNA fragments generated after treatment with DNase + I, which preferentially cuts accessible DNA. + meaning: edam:topic_4063 + title: DNase sequencing + edam:topic_4064: + text: edam:topic_4064 + description: Specific sequencing of small RNAs using a variant of RNA-seq, + with an additional fragment size selection step. + meaning: edam:topic_4064 + title: MicroRNA sequencing + edam:topic_4065: + text: edam:topic_4065 + description: Exposomics is the systematic and comprehensive study of the exposome + and the associated biological responses (exposure-phenotype interaction). + Exposome is the totality of environmental exposures, that is, the cumulative + (e.g. life-long) totality of contacts between external factors (e.g. chemical + agents) and a living organism, a population, or a biological taxon. + meaning: edam:topic_4065 + title: Exposomics + reachable_from: + source_ontology: bioregistry:edam + source_nodes: + - edam:topic_0003 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: false + EnumDataSourceType: + name: EnumDataSourceType + description: Approaches to ascertain information about a participant. + title: Data Source Type + from_schema: https://includedcc.org/common-access-model/EnumDataSourceType + permissible_values: + CAMO:0000014: + text: CAMO:0000014 + description: Data obtained directly from an Electronic Health Record. + title: Electronic Health Record + aliases: + - medical_record + CAMO:0000010: + text: CAMO:0000010 + description: Data obtained from a survey or questionnaire given to a participant + or their representative. + title: Survey + aliases: + - participant_or_caregiver_report + CAMO:0000011: + text: CAMO:0000011 + description: Data obtained by research staff for the study. + title: Research Assessment + aliases: + - investigator_assessment + CAMO:0000012: + text: CAMO:0000012 + description: Data obtained by research staff interviewing participants, representatives, + or others. + title: Interview + CAMO:0000013: + text: CAMO:0000013 + description: Data obtained directly by research staff examining the participant. + title: Physical Examination + reachable_from: + source_ontology: camo + source_nodes: + - CAMO:0000009 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: true + EnumDataUseModifier: + name: EnumDataUseModifier + description: Data Use Ontology (DUO) terms for data use modifiers. + title: Data Use Modifier + from_schema: https://includedcc.org/common-access-model/EnumDataUseModifier + permissible_values: + DUO:00000044: + text: DUO:00000044 + description: This data use modifier indicates use for purposes of population, + origin, or ancestry research is prohibited. + meaning: DUO:00000044 + title: population origins or ancestry research prohibited + DUO:0000012: + text: DUO:0000012 + description: This data use modifier indicates that use is limited to studies + of a certain research type. + meaning: DUO:0000012 + title: research specific restrictions + DUO:0000015: + text: DUO:0000015 + description: This data use modifier indicates that use does not allow methods + development research (e.g., development of software or algorithms). + meaning: DUO:0000015 + title: no general methods research + DUO:0000016: + text: DUO:0000016 + description: This data use modifier indicates that use is limited to genetic + studies only (i.e., studies that include genotype research alone or both + genotype and phenotype research, but not phenotype research exclusively) + meaning: DUO:0000016 + title: genetic studies only + DUO:0000018: + text: DUO:0000018 + description: This data use modifier indicates that use of the data is limited + to not-for-profit organizations and not-for-profit use, non-commercial use. + meaning: DUO:0000018 + title: not for profit, non commercial use only + DUO:0000019: + text: DUO:0000019 + description: This data use modifier indicates that requestor agrees to make + results of studies using the data available to the larger scientific community. + meaning: DUO:0000019 + title: publication required + DUO:0000020: + text: DUO:0000020 + description: 'This could be coupled with a string describing the primary study + investigator(s). + + This data use modifier indicates that the requestor must agree to collaboration + with the primary study investigator(s).' + meaning: DUO:0000020 + title: collaboration required + DUO:0000021: + text: DUO:0000021 + description: This data use modifier indicates that the requestor must provide + documentation of local IRB/ERB approval. + meaning: DUO:0000021 + title: ethics approval required + DUO:0000022: + text: DUO:0000022 + description: 'This data use modifier indicates that use is limited to within + a specific geographic region. + + This should be coupled with an ontology term describing the geographical + location the restriction applies to.' + meaning: DUO:0000022 + title: geographical restriction + DUO:0000024: + text: DUO:0000024 + description: 'This data use modifier indicates that requestor agrees not to + publish results of studies until a specific date. + + This should be coupled with a date specified as ISO8601' + meaning: DUO:0000024 + title: publication moratorium + DUO:0000025: + text: DUO:0000025 + description: 'This data use modifier indicates that use is approved for a + specific number of months. + + This should be coupled with an integer value indicating the number of months.' + meaning: DUO:0000025 + title: time limit on use + DUO:0000026: + text: DUO:0000026 + description: This data use modifier indicates that use is limited to use by + approved users. + meaning: DUO:0000026 + title: user specific restriction + DUO:0000027: + text: DUO:0000027 + description: This data use modifier indicates that use is limited to use within + an approved project. + meaning: DUO:0000027 + title: project specific restriction + DUO:0000028: + text: DUO:0000028 + description: This data use modifier indicates that use is limited to use within + an approved institution. + meaning: DUO:0000028 + title: institution specific restriction + DUO:0000029: + text: DUO:0000029 + description: This data use modifier indicates that the requestor must return + derived/enriched data to the database/resource. + meaning: DUO:0000029 + title: return to database or resource + DUO:0000043: + text: DUO:0000043 + description: 'Clinical Care is defined as Health care or services provided + at home, in a healthcare facility or hospital. Data may be used for clinical + decision making. + + This data use modifier indicates that use is allowed for clinical use and + care.' + meaning: DUO:0000043 + title: clinical care use + DUO:0000045: + text: DUO:0000045 + description: This data use modifier indicates that use of the data is limited + to not-for-profit organizations. + meaning: DUO:0000045 + title: not for profit organisation use only + DUO:0000046: + text: DUO:0000046 + description: 'This data use modifier indicates that use of the data is limited + to not-for-profit use. + + This indicates that data can be used by commercial organisations for research + purposes, but not commercial purposes.' + meaning: DUO:0000046 + title: non-commercial use only + reachable_from: + source_ontology: bioregistry:duo + source_nodes: + - DUO:0000017 + relationship_types: + - rdfs:subClassOf + is_direct: false + EnumDataUsePermission: + name: EnumDataUsePermission + description: Data Use Ontology (DUO) terms for data use permissions. + title: Data Use Permission + from_schema: https://includedcc.org/common-access-model/EnumDataUsePermission + permissible_values: + DUO:0000004: + text: DUO:0000004 + description: This data use permission indicates there is no restriction on + use. + meaning: DUO:0000004 + title: no restriction + DUO:0000006: + text: DUO:0000006 + description: This data use permission indicates that use is allowed for health/medical/biomedical + purposes; does not include the study of population origins or ancestry. + meaning: DUO:0000006 + title: health or medical or biomedical research + DUO:0000007: + text: DUO:0000007 + description: "This data use permission indicates that use is allowed provided\ + \ it is related to the specified disease.\nThis term should be coupled with\ + \ a term describing a disease from an ontology to specify the disease the\ + \ restriction applies to. \n\nDUO recommends MONDO be used, to provide the\ + \ basis for automated evaluation. For more information see https://github.com/EBISPOT/DUO/blob/master/MONDO_Overview.md\n\ + \nOther resources, such as the Disease Ontology, HPO, SNOMED-CT or others,\ + \ can also be used. When those other resources are being used, this may\ + \ require an extra mapping step to leverage automated matching algorithms." + meaning: DUO:0000007 + title: disease specific research + DUO:0000011: + text: DUO:0000011 + description: This data use permission indicates that use of the data is limited + to the study of population origins or ancestry. + meaning: DUO:0000011 + title: population origins or ancestry research only + DUO:0000042: + text: DUO:0000042 + description: 'This data use permission indicates that use is allowed for general + research use for any research purpose. + + This includes but is not limited to: health/medical/biomedical purposes, + fundamental biology research, the study of population origins or ancestry, + statistical methods and algorithms development, and social-sciences research.' + meaning: DUO:0000042 + title: general research use + reachable_from: + source_ontology: bioregistry:duo + source_nodes: + - DUO:0000001 + relationship_types: + - rdfs:subClassOf + is_direct: false + EnumEDAMDataTypes: + name: EnumEDAMDataTypes + description: Data types from the EDAM ontology. + from_schema: https://includedcc.org/common-access-model/EnumEDAMDataTypes + permissible_values: + edam:data_0582: + text: edam:data_0582 + description: An ontology of biological or bioinformatics concepts and relations, + a controlled vocabulary, structured glossary etc. + meaning: edam:data_0582 + title: Ontology + edam:data_0842: + text: edam:data_0842 + description: A text token, number or something else which identifies an entity, + but which may not be persistent (stable) or unique (the same identifier + may identify multiple things). + meaning: edam:data_0842 + title: Identifier + edam:data_0844: + text: edam:data_0844 + description: Mass of a molecule. + meaning: edam:data_0844 + title: Molecular mass + edam:data_0845: + text: edam:data_0845 + description: Net charge of a molecule. + meaning: edam:data_0845 + title: Molecular charge + edam:data_0846: + text: edam:data_0846 + description: A specification of a chemical structure. + meaning: edam:data_0846 + title: Chemical formula + edam:data_0847: + text: edam:data_0847 + description: A QSAR quantitative descriptor (name-value pair) of chemical + structure. + meaning: edam:data_0847 + title: QSAR descriptor + edam:data_0849: + text: edam:data_0849 + description: A molecular sequence and associated metadata. + meaning: edam:data_0849 + title: Sequence record + edam:data_0850: + text: edam:data_0850 + description: A collection of one or typically multiple molecular sequences + (which can include derived data or metadata) that do not (typically) correspond + to molecular sequence database records or entries and which (typically) + are derived from some analytical method. + meaning: edam:data_0850 + title: Sequence set + edam:data_0856: + text: edam:data_0856 + description: How the annotation of a sequence feature (for example in EMBL + or Swiss-Prot) was derived. + meaning: edam:data_0856 + title: Sequence feature source + edam:data_0857: + text: edam:data_0857 + description: A report of sequence hits and associated data from searching + a database of sequences (for example a BLAST search). This will typically + include a list of scores (often with statistical evaluation) and a set of + alignments for the hits. + meaning: edam:data_0857 + title: Sequence search results + edam:data_0858: + text: edam:data_0858 + description: Report on the location of matches ("hits") between sequences, + sequence profiles, motifs (conserved or functional patterns) and other types + of sequence signatures. + meaning: edam:data_0858 + title: Sequence signature matches + edam:data_0860: + text: edam:data_0860 + description: Sequence signature data concerns specific or conserved pattern + in molecular sequences and the classifiers used for their identification, + including sequence motifs, profiles or other diagnostic element. + meaning: edam:data_0860 + title: Sequence signature data + edam:data_0862: + text: edam:data_0862 + description: A dotplot of sequence similarities identified from word-matching + or character comparison. + meaning: edam:data_0862 + title: Dotplot + edam:data_0863: + text: edam:data_0863 + description: Alignment of multiple molecular sequences. + meaning: edam:data_0863 + title: Sequence alignment + edam:data_0865: + text: edam:data_0865 + description: A value representing molecular sequence similarity. + meaning: edam:data_0865 + title: Sequence similarity score + edam:data_0867: + text: edam:data_0867 + description: An informative report of molecular sequence alignment-derived + data or metadata. + meaning: edam:data_0867 + title: Sequence alignment report + edam:data_0870: + text: edam:data_0870 + description: A matrix of estimated evolutionary distance between molecular + sequences, such as is suitable for phylogenetic tree calculation. + meaning: edam:data_0870 + title: Sequence distance matrix + edam:data_0871: + text: edam:data_0871 + description: Basic character data from which a phylogenetic tree may be generated. + meaning: edam:data_0871 + title: Phylogenetic character data + edam:data_0872: + text: edam:data_0872 + description: The raw data (not just an image) from which a phylogenetic tree + is directly generated or plotted, such as topology, lengths (in time or + in expected amounts of variance) and a confidence interval for each length. + meaning: edam:data_0872 + title: Phylogenetic tree + edam:data_0874: + text: edam:data_0874 + description: Matrix of integer or floating point numbers for amino acid or + nucleotide sequence comparison. + meaning: edam:data_0874 + title: Comparison matrix + edam:data_0878: + text: edam:data_0878 + description: Alignment of the (1D representations of) secondary structure + of two or more proteins. + meaning: edam:data_0878 + title: Protein secondary structure alignment + edam:data_0880: + text: edam:data_0880 + description: An informative report of secondary structure (predicted or real) + of an RNA molecule. + meaning: edam:data_0880 + title: RNA secondary structure + edam:data_0881: + text: edam:data_0881 + description: Alignment of the (1D representations of) secondary structure + of two or more RNA molecules. + meaning: edam:data_0881 + title: RNA secondary structure alignment + edam:data_0883: + text: edam:data_0883 + description: 3D coordinate and associated data for a macromolecular tertiary + (3D) structure or part of a structure. + meaning: edam:data_0883 + title: Structure + edam:data_0886: + text: edam:data_0886 + description: Alignment (superimposition) of molecular tertiary (3D) structures. + meaning: edam:data_0886 + title: Structure alignment + edam:data_0887: + text: edam:data_0887 + description: An informative report of molecular tertiary structure alignment-derived + data. + meaning: edam:data_0887 + title: Structure alignment report + edam:data_0888: + text: edam:data_0888 + description: A value representing molecular structure similarity, measured + from structure alignment or some other type of structure comparison. + meaning: edam:data_0888 + title: Structure similarity score + edam:data_0889: + text: edam:data_0889 + description: Some type of structural (3D) profile or template (representing + a structure or structure alignment). + meaning: edam:data_0889 + title: Structural profile + edam:data_0890: + text: edam:data_0890 + description: A 3D profile-3D profile alignment (each profile representing + structures or a structure alignment). + meaning: edam:data_0890 + title: Structural (3D) profile alignment + edam:data_0892: + text: edam:data_0892 + description: Matrix of values used for scoring sequence-structure compatibility. + meaning: edam:data_0892 + title: Protein sequence-structure scoring matrix + edam:data_0893: + text: edam:data_0893 + description: An alignment of molecular sequence to structure (from threading + sequence(s) through 3D structure or representation of structure(s)). + meaning: edam:data_0893 + title: Sequence-structure alignment + edam:data_0896: + text: edam:data_0896 + description: An informative human-readable report about one or more specific + protein molecules or protein structural domains, derived from analysis of + primary (sequence or structural) data. + meaning: edam:data_0896 + title: Protein report + edam:data_0897: + text: edam:data_0897 + description: A report of primarily non-positional data describing intrinsic + physical, chemical or other properties of a protein molecule or model. + meaning: edam:data_0897 + title: Protein property + edam:data_0905: + text: edam:data_0905 + description: Protein-protein interaction data from for example yeast two-hybrid + analysis, protein microarrays, immunoaffinity chromatography followed by + mass spectrometry, phage display etc. + meaning: edam:data_0905 + title: Protein interaction raw data + edam:data_0906: + text: edam:data_0906 + description: Data concerning the interactions (predicted or known) within + or between a protein, structural domain or part of a protein. This includes + intra- and inter-residue contacts and distances, as well as interactions + with other proteins and non-protein entities such as nucleic acid, metal + atoms, water, ions etc. + meaning: edam:data_0906 + title: Protein interaction data + edam:data_0907: + text: edam:data_0907 + description: An informative report on a specific protein family or other classification + or group of protein sequences or structures. + meaning: edam:data_0907 + title: Protein family report + edam:data_0909: + text: edam:data_0909 + description: The maximum initial velocity or rate of a reaction. It is the + limiting velocity as substrate concentrations get very large. + meaning: edam:data_0909 + title: Vmax + edam:data_0910: + text: edam:data_0910 + description: Km is the concentration (usually in Molar units) of substrate + that leads to half-maximal velocity of an enzyme-catalysed reaction. + meaning: edam:data_0910 + title: Km + edam:data_0912: + text: edam:data_0912 + description: A report of primarily non-positional data describing intrinsic + physical, chemical or other properties of a nucleic acid molecule. + meaning: edam:data_0912 + title: Nucleic acid property + edam:data_0914: + text: edam:data_0914 + description: Data derived from analysis of codon usage (typically a codon + usage table) of DNA sequences. + meaning: edam:data_0914 + title: Codon usage data + edam:data_0916: + text: edam:data_0916 + description: A report on predicted or actual gene structure, regions which + make an RNA product and features such as promoters, coding regions, splice + sites etc. + meaning: edam:data_0916 + title: Gene report + edam:data_0919: + text: edam:data_0919 + description: A human-readable collection of information about a specific chromosome. + meaning: edam:data_0919 + title: Chromosome report + edam:data_0920: + text: edam:data_0920 + description: A human-readable collection of information about the set of genes + (or allelic forms) present in an individual, organism or cell and associated + with a specific physical characteristic, or a report concerning an organisms + traits and phenotypes. + meaning: edam:data_0920 + title: Genotype/phenotype report + edam:data_0924: + text: edam:data_0924 + description: Fluorescence trace data generated by an automated DNA sequencer, + which can be interpreted as a molecular sequence (reads), given associated + sequencing metadata such as base-call quality scores. + meaning: edam:data_0924 + title: Sequence trace + edam:data_0925: + text: edam:data_0925 + description: An assembly of fragments of a (typically genomic) DNA sequence. + meaning: edam:data_0925 + title: Sequence assembly + edam:data_0926: + text: edam:data_0926 + description: Radiation hybrid scores (RH) scores for one or more markers. + meaning: edam:data_0926 + title: RH scores + edam:data_0927: + text: edam:data_0927 + description: A human-readable collection of information about the linkage + of alleles. + meaning: edam:data_0927 + title: Genetic linkage report + edam:data_0928: + text: edam:data_0928 + description: Data quantifying the level of expression of (typically) multiple + genes, derived for example from microarray experiments. + meaning: edam:data_0928 + title: Gene expression profile + edam:data_0937: + text: edam:data_0937 + description: X-ray crystallography data. + meaning: edam:data_0937 + title: Electron density map + edam:data_0938: + text: edam:data_0938 + description: Nuclear magnetic resonance (NMR) raw data, typically for a protein. + meaning: edam:data_0938 + title: Raw NMR data + edam:data_0939: + text: edam:data_0939 + description: Protein secondary structure from protein coordinate or circular + dichroism (CD) spectroscopic data. + meaning: edam:data_0939 + title: CD spectra + edam:data_0940: + text: edam:data_0940 + description: Volume map data from electron microscopy. + meaning: edam:data_0940 + title: Volume map + edam:data_0942: + text: edam:data_0942 + description: Two-dimensional gel electrophoresis image. + meaning: edam:data_0942 + title: 2D PAGE image + edam:data_0943: + text: edam:data_0943 + description: Spectra from mass spectrometry. + meaning: edam:data_0943 + title: Mass spectrum + edam:data_0944: + text: edam:data_0944 + description: A set of peptide masses (peptide mass fingerprint) from mass + spectrometry. + meaning: edam:data_0944 + title: Peptide mass fingerprint + edam:data_0945: + text: edam:data_0945 + description: Protein or peptide identifications with evidence supporting the + identifications, for example from comparing a peptide mass fingerprint (from + mass spectrometry) to a sequence database, or the set of typical spectra + one obtains when running a protein through a mass spectrometer. + meaning: edam:data_0945 + title: Peptide identification + edam:data_0949: + text: edam:data_0949 + description: Basic information, annotation or documentation concerning a workflow + (but not the workflow itself). + meaning: edam:data_0949 + title: Workflow metadata + edam:data_0950: + text: edam:data_0950 + description: A biological model represented in mathematical terms. + meaning: edam:data_0950 + title: Mathematical model + edam:data_0951: + text: edam:data_0951 + description: A value representing estimated statistical significance of some + observed data; typically sequence database hits. + meaning: edam:data_0951 + title: Statistical estimate score + edam:data_0954: + text: edam:data_0954 + description: A mapping of the accession numbers (or other database identifier) + of entries between (typically) two biological or biomedical databases. + meaning: edam:data_0954 + title: Database cross-mapping + edam:data_0955: + text: edam:data_0955 + description: An index of data of biological relevance. + meaning: edam:data_0955 + title: Data index + edam:data_0956: + text: edam:data_0956 + description: A human-readable collection of information concerning an analysis + of an index of biological data. + meaning: edam:data_0956 + title: Data index report + edam:data_0957: + text: edam:data_0957 + description: Basic information on bioinformatics database(s) or other data + sources such as name, type, description, URL etc. + meaning: edam:data_0957 + title: Database metadata + edam:data_0958: + text: edam:data_0958 + description: Basic information about one or more bioinformatics applications + or packages, such as name, type, description, or other documentation. + meaning: edam:data_0958 + title: Tool metadata + edam:data_0960: + text: edam:data_0960 + description: Textual metadata on a software author or end-user, for example + a person or other software. + meaning: edam:data_0960 + title: User metadata + edam:data_0962: + text: edam:data_0962 + description: A human-readable collection of information about a specific chemical + compound. + meaning: edam:data_0962 + title: Small molecule report + edam:data_0963: + text: edam:data_0963 + description: A human-readable collection of information about a particular + strain of organism cell line including plants, virus, fungi and bacteria. + The data typically includes strain number, organism type, growth conditions, + source and so on. + meaning: edam:data_0963 + title: Cell line report + edam:data_0966: + text: edam:data_0966 + description: A term (name) from an ontology. + meaning: edam:data_0966 + title: Ontology term + edam:data_0967: + text: edam:data_0967 + description: Data concerning or derived from a concept from a biological ontology. + meaning: edam:data_0967 + title: Ontology concept data + edam:data_0968: + text: edam:data_0968 + description: Keyword(s) or phrase(s) used (typically) for text-searching purposes. + meaning: edam:data_0968 + title: Keyword + edam:data_0970: + text: edam:data_0970 + description: Bibliographic data that uniquely identifies a scientific article, + book or other published material. + meaning: edam:data_0970 + title: Citation + edam:data_0971: + text: edam:data_0971 + description: A scientific text, typically a full text article from a scientific + journal. + meaning: edam:data_0971 + title: Article + edam:data_0972: + text: edam:data_0972 + description: A human-readable collection of information resulting from text + mining. + meaning: edam:data_0972 + title: Text mining report + edam:data_0976: + text: edam:data_0976 + description: An identifier that identifies a particular type of data. + meaning: edam:data_0976 + title: Identifier (by type of entity) + edam:data_0977: + text: edam:data_0977 + description: An identifier of a bioinformatics tool, e.g. an application or + web service. + meaning: edam:data_0977 + title: Tool identifier + edam:data_0982: + text: edam:data_0982 + description: Name or other identifier of a molecule. + meaning: edam:data_0982 + title: Molecule identifier + edam:data_0983: + text: edam:data_0983 + description: Identifier (e.g. character symbol) of a specific atom. + meaning: edam:data_0983 + title: Atom ID + edam:data_0984: + text: edam:data_0984 + description: Name of a specific molecule. + meaning: edam:data_0984 + title: Molecule name + edam:data_0987: + text: edam:data_0987 + description: Name of a chromosome. + meaning: edam:data_0987 + title: Chromosome name + edam:data_0988: + text: edam:data_0988 + description: Identifier of a peptide chain. + meaning: edam:data_0988 + title: Peptide identifier + edam:data_0989: + text: edam:data_0989 + description: Identifier of a protein. + meaning: edam:data_0989 + title: Protein identifier + edam:data_0990: + text: edam:data_0990 + description: Unique name of a chemical compound. + meaning: edam:data_0990 + title: Compound name + edam:data_0991: + text: edam:data_0991 + description: Unique registry number of a chemical compound. + meaning: edam:data_0991 + title: Chemical registry number + edam:data_0993: + text: edam:data_0993 + description: Identifier of a drug. + meaning: edam:data_0993 + title: Drug identifier + edam:data_0994: + text: edam:data_0994 + description: Identifier of an amino acid. + meaning: edam:data_0994 + title: Amino acid identifier + edam:data_0995: + text: edam:data_0995 + description: Name or other identifier of a nucleotide. + meaning: edam:data_0995 + title: Nucleotide identifier + edam:data_0996: + text: edam:data_0996 + description: Identifier of a monosaccharide. + meaning: edam:data_0996 + title: Monosaccharide identifier + edam:data_0997: + text: edam:data_0997 + description: Unique name from Chemical Entities of Biological Interest (ChEBI) + of a chemical compound. + meaning: edam:data_0997 + title: Chemical name (ChEBI) + edam:data_0998: + text: edam:data_0998 + description: IUPAC recommended name of a chemical compound. + meaning: edam:data_0998 + title: Chemical name (IUPAC) + edam:data_0999: + text: edam:data_0999 + description: International Non-proprietary Name (INN or 'generic name') of + a chemical compound, assigned by the World Health Organisation (WHO). + meaning: edam:data_0999 + title: Chemical name (INN) + edam:data_1000: + text: edam:data_1000 + description: Brand name of a chemical compound. + meaning: edam:data_1000 + title: Chemical name (brand) + edam:data_1001: + text: edam:data_1001 + description: Synonymous name of a chemical compound. + meaning: edam:data_1001 + title: Chemical name (synonymous) + edam:data_1002: + text: edam:data_1002 + description: CAS registry number of a chemical compound; a unique numerical + identifier of chemicals in the scientific literature, as assigned by the + Chemical Abstracts Service. + meaning: edam:data_1002 + title: CAS number + edam:data_1003: + text: edam:data_1003 + description: Beilstein registry number of a chemical compound. + meaning: edam:data_1003 + title: Chemical registry number (Beilstein) + edam:data_1004: + text: edam:data_1004 + description: Gmelin registry number of a chemical compound. + meaning: edam:data_1004 + title: Chemical registry number (Gmelin) + edam:data_1005: + text: edam:data_1005 + description: 3-letter code word for a ligand (HET group) from a PDB file, + for example ATP. + meaning: edam:data_1005 + title: HET group name + edam:data_1006: + text: edam:data_1006 + description: String of one or more ASCII characters representing an amino + acid. + meaning: edam:data_1006 + title: Amino acid name + edam:data_1007: + text: edam:data_1007 + description: String of one or more ASCII characters representing a nucleotide. + meaning: edam:data_1007 + title: Nucleotide code + edam:data_1008: + text: edam:data_1008 + description: Identifier of a polypeptide chain from a protein. + meaning: edam:data_1008 + title: Polypeptide chain ID + edam:data_1009: + text: edam:data_1009 + description: Name of a protein. + meaning: edam:data_1009 + title: Protein name + edam:data_1010: + text: edam:data_1010 + description: Name or other identifier of an enzyme or record from a database + of enzymes. + meaning: edam:data_1010 + title: Enzyme identifier + edam:data_1011: + text: edam:data_1011 + description: An Enzyme Commission (EC) number of an enzyme. + meaning: edam:data_1011 + title: EC number + edam:data_1012: + text: edam:data_1012 + description: Name of an enzyme. + meaning: edam:data_1012 + title: Enzyme name + edam:data_1013: + text: edam:data_1013 + description: Name of a restriction enzyme. + meaning: edam:data_1013 + title: Restriction enzyme name + edam:data_1015: + text: edam:data_1015 + description: A unique identifier of molecular sequence feature, for example + an ID of a feature that is unique within the scope of the GFF file. + meaning: edam:data_1015 + title: Sequence feature ID + edam:data_1016: + text: edam:data_1016 + description: A position of one or more points (base or residue) in a sequence, + or part of such a specification. + meaning: edam:data_1016 + title: Sequence position + edam:data_1017: + text: edam:data_1017 + description: Specification of range(s) of sequence positions. + meaning: edam:data_1017 + title: Sequence range + edam:data_1020: + text: edam:data_1020 + description: The type of a sequence feature, typically a term or accession + from the Sequence Ontology, for example an EMBL or Swiss-Prot sequence feature + key. + meaning: edam:data_1020 + title: Sequence feature key + edam:data_1021: + text: edam:data_1021 + description: Typically one of the EMBL or Swiss-Prot feature qualifiers. + meaning: edam:data_1021 + title: Sequence feature qualifier + edam:data_1022: + text: edam:data_1022 + description: A name of a sequence feature, e.g. the name of a feature to be + displayed to an end-user. Typically an EMBL or Swiss-Prot feature label. + meaning: edam:data_1022 + title: Sequence feature label + edam:data_1023: + text: edam:data_1023 + description: The name of a sequence feature-containing entity adhering to + the standard feature naming scheme used by all EMBOSS applications. + meaning: edam:data_1023 + title: EMBOSS Uniform Feature Object + edam:data_1025: + text: edam:data_1025 + description: An identifier of a gene, such as a name/symbol or a unique identifier + of a gene in a database. + meaning: edam:data_1025 + title: Gene identifier + edam:data_1026: + text: edam:data_1026 + description: The short name of a gene; a single word that does not contain + white space characters. It is typically derived from the gene name. + meaning: edam:data_1026 + title: Gene symbol + edam:data_1027: + text: edam:data_1027 + description: An NCBI unique identifier of a gene. + meaning: edam:data_1027 + title: Gene ID (NCBI) + edam:data_1031: + text: edam:data_1031 + description: Identifier of a gene or feature from the CGD database. + meaning: edam:data_1031 + title: Gene ID (CGD) + edam:data_1032: + text: edam:data_1032 + description: Identifier of a gene from DictyBase. + meaning: edam:data_1032 + title: Gene ID (DictyBase) + edam:data_1033: + text: edam:data_1033 + description: Unique identifier for a gene (or other feature) from the Ensembl + database. + meaning: edam:data_1033 + title: Ensembl gene ID + edam:data_1034: + text: edam:data_1034 + description: Identifier of an entry from the SGD database. + meaning: edam:data_1034 + title: Gene ID (SGD) + edam:data_1035: + text: edam:data_1035 + description: Identifier of a gene from the GeneDB database. + meaning: edam:data_1035 + title: Gene ID (GeneDB) + edam:data_1036: + text: edam:data_1036 + description: Identifier of an entry from the TIGR database. + meaning: edam:data_1036 + title: TIGR identifier + edam:data_1037: + text: edam:data_1037 + description: Identifier of an gene from the TAIR database. + meaning: edam:data_1037 + title: TAIR accession (gene) + edam:data_1038: + text: edam:data_1038 + description: Identifier of a protein structural domain. + meaning: edam:data_1038 + title: Protein domain ID + edam:data_1039: + text: edam:data_1039 + description: Identifier of a protein domain (or other node) from the SCOP + database. + meaning: edam:data_1039 + title: SCOP domain identifier + edam:data_1040: + text: edam:data_1040 + description: Identifier of a protein domain from CATH. + meaning: edam:data_1040 + title: CATH domain ID + edam:data_1041: + text: edam:data_1041 + description: A SCOP concise classification string (sccs) is a compact representation + of a SCOP domain classification. + meaning: edam:data_1041 + title: SCOP concise classification string (sccs) + edam:data_1042: + text: edam:data_1042 + description: Unique identifier (number) of an entry in the SCOP hierarchy, + for example 33229. + meaning: edam:data_1042 + title: SCOP sunid + edam:data_1043: + text: edam:data_1043 + description: A code number identifying a node from the CATH database. + meaning: edam:data_1043 + title: CATH node ID + edam:data_1044: + text: edam:data_1044 + description: The name of a biological kingdom (Bacteria, Archaea, or Eukaryotes). + meaning: edam:data_1044 + title: Kingdom name + edam:data_1045: + text: edam:data_1045 + description: The name of a species (typically a taxonomic group) of organism. + meaning: edam:data_1045 + title: Species name + edam:data_1046: + text: edam:data_1046 + description: The name of a strain of an organism variant, typically a plant, + virus or bacterium. + meaning: edam:data_1046 + title: Strain name + edam:data_1047: + text: edam:data_1047 + description: A string of characters that name or otherwise identify a resource + on the Internet. + meaning: edam:data_1047 + title: URI + edam:data_1048: + text: edam:data_1048 + description: An identifier of a biological or bioinformatics database. + meaning: edam:data_1048 + title: Database ID + edam:data_1049: + text: edam:data_1049 + description: The name of a directory. + meaning: edam:data_1049 + title: Directory name + edam:data_1050: + text: edam:data_1050 + description: The name (or part of a name) of a file (of any type). + meaning: edam:data_1050 + title: File name + edam:data_1051: + text: edam:data_1051 + description: Name of an ontology of biological or bioinformatics concepts + and relations. + meaning: edam:data_1051 + title: Ontology name + edam:data_1052: + text: edam:data_1052 + description: A Uniform Resource Locator (URL). + meaning: edam:data_1052 + title: URL + edam:data_1053: + text: edam:data_1053 + description: A Uniform Resource Name (URN). + meaning: edam:data_1053 + title: URN + edam:data_1055: + text: edam:data_1055 + description: A Life Science Identifier (LSID) - a unique identifier of some + data. + meaning: edam:data_1055 + title: LSID + edam:data_1056: + text: edam:data_1056 + description: The name of a biological or bioinformatics database. + meaning: edam:data_1056 + title: Database name + edam:data_1058: + text: edam:data_1058 + description: The name of a file (of any type) with restricted possible values. + meaning: edam:data_1058 + title: Enumerated file name + edam:data_1059: + text: edam:data_1059 + description: The extension of a file name. + meaning: edam:data_1059 + title: File name extension + edam:data_1060: + text: edam:data_1060 + description: The base name of a file. + meaning: edam:data_1060 + title: File base name + edam:data_1061: + text: edam:data_1061 + description: Name of a QSAR descriptor. + meaning: edam:data_1061 + title: QSAR descriptor name + edam:data_1063: + text: edam:data_1063 + description: An identifier of molecular sequence(s) or entries from a molecular + sequence database. + meaning: edam:data_1063 + title: Sequence identifier + edam:data_1064: + text: edam:data_1064 + description: An identifier of a set of molecular sequence(s). + meaning: edam:data_1064 + title: Sequence set ID + edam:data_1066: + text: edam:data_1066 + description: Identifier of a molecular sequence alignment, for example a record + from an alignment database. + meaning: edam:data_1066 + title: Sequence alignment ID + edam:data_1068: + text: edam:data_1068 + description: Identifier of a phylogenetic tree for example from a phylogenetic + tree database. + meaning: edam:data_1068 + title: Phylogenetic tree ID + edam:data_1069: + text: edam:data_1069 + description: An identifier of a comparison matrix. + meaning: edam:data_1069 + title: Comparison matrix identifier + edam:data_1070: + text: edam:data_1070 + description: A unique and persistent identifier of a molecular tertiary structure, + typically an entry from a structure database. + meaning: edam:data_1070 + title: Structure ID + edam:data_1071: + text: edam:data_1071 + description: Identifier or name of a structural (3D) profile or template (representing + a structure or structure alignment). + meaning: edam:data_1071 + title: Structural (3D) profile ID + edam:data_1072: + text: edam:data_1072 + description: Identifier of an entry from a database of tertiary structure + alignments. + meaning: edam:data_1072 + title: Structure alignment ID + edam:data_1073: + text: edam:data_1073 + description: Identifier of an index of amino acid physicochemical and biochemical + property data. + meaning: edam:data_1073 + title: Amino acid index ID + edam:data_1074: + text: edam:data_1074 + description: Identifier of a report of protein interactions from a protein + interaction database (typically). + meaning: edam:data_1074 + title: Protein interaction ID + edam:data_1075: + text: edam:data_1075 + description: Identifier of a protein family. + meaning: edam:data_1075 + title: Protein family identifier + edam:data_1076: + text: edam:data_1076 + description: Unique name of a codon usage table. + meaning: edam:data_1076 + title: Codon usage table name + edam:data_1077: + text: edam:data_1077 + description: Identifier of a transcription factor (or a TF binding site). + meaning: edam:data_1077 + title: Transcription factor identifier + edam:data_1078: + text: edam:data_1078 + description: Identifier of an entry from a database of microarray data. + meaning: edam:data_1078 + title: Experiment annotation ID + edam:data_1079: + text: edam:data_1079 + description: Identifier of an entry from a database of electron microscopy + data. + meaning: edam:data_1079 + title: Electron microscopy model ID + edam:data_1080: + text: edam:data_1080 + description: Accession of a report of gene expression (e.g. a gene expression + profile) from a database. + meaning: edam:data_1080 + title: Gene expression report ID + edam:data_1081: + text: edam:data_1081 + description: Identifier of an entry from a database of genotypes and phenotypes. + meaning: edam:data_1081 + title: Genotype and phenotype annotation ID + edam:data_1082: + text: edam:data_1082 + description: Identifier of an entry from a database of biological pathways + or networks. + meaning: edam:data_1082 + title: Pathway or network identifier + edam:data_1083: + text: edam:data_1083 + description: Identifier of a biological or biomedical workflow, typically + from a database of workflows. + meaning: edam:data_1083 + title: Workflow ID + edam:data_1084: + text: edam:data_1084 + description: Identifier of a data type definition from some provider. + meaning: edam:data_1084 + title: Data resource definition ID + edam:data_1085: + text: edam:data_1085 + description: Identifier of a mathematical model, typically an entry from a + database. + meaning: edam:data_1085 + title: Biological model ID + edam:data_1086: + text: edam:data_1086 + description: Identifier of an entry from a database of chemicals. + meaning: edam:data_1086 + title: Compound identifier + edam:data_1087: + text: edam:data_1087 + description: A unique (typically numerical) identifier of a concept in an + ontology of biological or bioinformatics concepts and relations. + meaning: edam:data_1087 + title: Ontology concept ID + edam:data_1088: + text: edam:data_1088 + description: Unique identifier of a scientific article. + meaning: edam:data_1088 + title: Article ID + edam:data_1089: + text: edam:data_1089 + description: Identifier of an object from the FlyBase database. + meaning: edam:data_1089 + title: FlyBase ID + edam:data_1091: + text: edam:data_1091 + description: Name of an object from the WormBase database, usually a human-readable + name. + meaning: edam:data_1091 + title: WormBase name + edam:data_1092: + text: edam:data_1092 + description: Class of an object from the WormBase database. + meaning: edam:data_1092 + title: WormBase class + edam:data_1093: + text: edam:data_1093 + description: A persistent, unique identifier of a molecular sequence database + entry. + meaning: edam:data_1093 + title: Sequence accession + edam:data_1095: + text: edam:data_1095 + description: The name of a sequence-based entity adhering to the standard + sequence naming scheme used by all EMBOSS applications. + meaning: edam:data_1095 + title: EMBOSS Uniform Sequence Address + edam:data_1096: + text: edam:data_1096 + description: Accession number of a protein sequence database entry. + meaning: edam:data_1096 + title: Sequence accession (protein) + edam:data_1097: + text: edam:data_1097 + description: Accession number of a nucleotide sequence database entry. + meaning: edam:data_1097 + title: Sequence accession (nucleic acid) + edam:data_1098: + text: edam:data_1098 + description: Accession number of a RefSeq database entry. + meaning: edam:data_1098 + title: RefSeq accession + edam:data_1100: + text: edam:data_1100 + description: An identifier of PIR sequence database entry. + meaning: edam:data_1100 + title: PIR identifier + edam:data_1102: + text: edam:data_1102 + description: Primary identifier of a Gramene database entry. + meaning: edam:data_1102 + title: Gramene primary identifier + edam:data_1103: + text: edam:data_1103 + description: Identifier of a (nucleic acid) entry from the EMBL/GenBank/DDBJ + databases. + meaning: edam:data_1103 + title: EMBL/GenBank/DDBJ ID + edam:data_1104: + text: edam:data_1104 + description: A unique identifier of an entry (gene cluster) from the NCBI + UniGene database. + meaning: edam:data_1104 + title: Sequence cluster ID (UniGene) + edam:data_1105: + text: edam:data_1105 + description: Identifier of a dbEST database entry. + meaning: edam:data_1105 + title: dbEST accession + edam:data_1106: + text: edam:data_1106 + description: Identifier of a dbSNP database entry. + meaning: edam:data_1106 + title: dbSNP ID + edam:data_1112: + text: edam:data_1112 + description: An identifier of a cluster of molecular sequence(s). + meaning: edam:data_1112 + title: Sequence cluster ID + edam:data_1113: + text: edam:data_1113 + description: Unique identifier of an entry from the COG database. + meaning: edam:data_1113 + title: Sequence cluster ID (COG) + edam:data_1114: + text: edam:data_1114 + description: Identifier of a sequence motif, for example an entry from a motif + database. + meaning: edam:data_1114 + title: Sequence motif identifier + edam:data_1115: + text: edam:data_1115 + description: Identifier of a sequence profile. + meaning: edam:data_1115 + title: Sequence profile ID + edam:data_1116: + text: edam:data_1116 + description: Identifier of an entry from the ELMdb database of protein functional + sites. + meaning: edam:data_1116 + title: ELM ID + edam:data_1117: + text: edam:data_1117 + description: Accession number of an entry from the Prosite database. + meaning: edam:data_1117 + title: Prosite accession number + edam:data_1118: + text: edam:data_1118 + description: Unique identifier or name of a HMMER hidden Markov model. + meaning: edam:data_1118 + title: HMMER hidden Markov model ID + edam:data_1119: + text: edam:data_1119 + description: Unique identifier or name of a profile from the JASPAR database. + meaning: edam:data_1119 + title: JASPAR profile ID + edam:data_1123: + text: edam:data_1123 + description: Accession number of an entry from the TreeBASE database. + meaning: edam:data_1123 + title: TreeBASE study accession number + edam:data_1124: + text: edam:data_1124 + description: Accession number of an entry from the TreeFam database. + meaning: edam:data_1124 + title: TreeFam accession number + edam:data_1126: + text: edam:data_1126 + description: Unique name or identifier of a comparison matrix. + meaning: edam:data_1126 + title: Comparison matrix name + edam:data_1127: + text: edam:data_1127 + description: An identifier of an entry from the PDB database. + meaning: edam:data_1127 + title: PDB ID + edam:data_1128: + text: edam:data_1128 + description: Identifier of an entry from the AAindex database. + meaning: edam:data_1128 + title: AAindex ID + edam:data_1129: + text: edam:data_1129 + description: Accession number of an entry from the BIND database. + meaning: edam:data_1129 + title: BIND accession number + edam:data_1130: + text: edam:data_1130 + description: Accession number of an entry from the IntAct database. + meaning: edam:data_1130 + title: IntAct accession number + edam:data_1131: + text: edam:data_1131 + description: Name of a protein family. + meaning: edam:data_1131 + title: Protein family name + edam:data_1132: + text: edam:data_1132 + description: Name of an InterPro entry, usually indicating the type of protein + matches for that entry. + meaning: edam:data_1132 + title: InterPro entry name + edam:data_1133: + text: edam:data_1133 + description: Primary accession number of an InterPro entry. + meaning: edam:data_1133 + title: InterPro accession + edam:data_1134: + text: edam:data_1134 + description: Secondary accession number of an InterPro entry. + meaning: edam:data_1134 + title: InterPro secondary accession + edam:data_1135: + text: edam:data_1135 + description: Unique identifier of an entry from the Gene3D database. + meaning: edam:data_1135 + title: Gene3D ID + edam:data_1136: + text: edam:data_1136 + description: Unique identifier of an entry from the PIRSF database. + meaning: edam:data_1136 + title: PIRSF ID + edam:data_1137: + text: edam:data_1137 + description: The unique identifier of an entry in the PRINTS database. + meaning: edam:data_1137 + title: PRINTS code + edam:data_1138: + text: edam:data_1138 + description: Accession number of a Pfam entry. + meaning: edam:data_1138 + title: Pfam accession number + edam:data_1139: + text: edam:data_1139 + description: Accession number of an entry from the SMART database. + meaning: edam:data_1139 + title: SMART accession number + edam:data_1140: + text: edam:data_1140 + description: Unique identifier (number) of a hidden Markov model from the + Superfamily database. + meaning: edam:data_1140 + title: Superfamily hidden Markov model number + edam:data_1141: + text: edam:data_1141 + description: Accession number of an entry (family) from the TIGRFam database. + meaning: edam:data_1141 + title: TIGRFam ID + edam:data_1142: + text: edam:data_1142 + description: A ProDom domain family accession number. + meaning: edam:data_1142 + title: ProDom accession number + edam:data_1143: + text: edam:data_1143 + description: Identifier of an entry from the TRANSFAC database. + meaning: edam:data_1143 + title: TRANSFAC accession number + edam:data_1144: + text: edam:data_1144 + description: Accession number of an entry from the ArrayExpress database. + meaning: edam:data_1144 + title: ArrayExpress accession number + edam:data_1145: + text: edam:data_1145 + description: PRIDE experiment accession number. + meaning: edam:data_1145 + title: PRIDE experiment accession number + edam:data_1146: + text: edam:data_1146 + description: Identifier of an entry from the EMDB electron microscopy database. + meaning: edam:data_1146 + title: EMDB ID + edam:data_1147: + text: edam:data_1147 + description: Accession number of an entry from the GEO database. + meaning: edam:data_1147 + title: GEO accession number + edam:data_1148: + text: edam:data_1148 + description: Identifier of an entry from the GermOnline database. + meaning: edam:data_1148 + title: GermOnline ID + edam:data_1149: + text: edam:data_1149 + description: Identifier of an entry from the EMAGE database. + meaning: edam:data_1149 + title: EMAGE ID + edam:data_1150: + text: edam:data_1150 + description: Accession number of an entry from a database of disease. + meaning: edam:data_1150 + title: Disease ID + edam:data_1151: + text: edam:data_1151 + description: Identifier of an entry from the HGVbase database. + meaning: edam:data_1151 + title: HGVbase ID + edam:data_1153: + text: edam:data_1153 + description: Identifier of an entry from the OMIM database. + meaning: edam:data_1153 + title: OMIM ID + edam:data_1154: + text: edam:data_1154 + description: Unique identifier of an object from one of the KEGG databases + (excluding the GENES division). + meaning: edam:data_1154 + title: KEGG object identifier + edam:data_1155: + text: edam:data_1155 + description: Identifier of an entry from the Reactome database. + meaning: edam:data_1155 + title: Pathway ID (reactome) + edam:data_1157: + text: edam:data_1157 + description: Identifier of an pathway from the BioCyc biological pathways + database. + meaning: edam:data_1157 + title: Pathway ID (BioCyc) + edam:data_1158: + text: edam:data_1158 + description: Identifier of an entry from the INOH database. + meaning: edam:data_1158 + title: Pathway ID (INOH) + edam:data_1159: + text: edam:data_1159 + description: Identifier of an entry from the PATIKA database. + meaning: edam:data_1159 + title: Pathway ID (PATIKA) + edam:data_1160: + text: edam:data_1160 + description: Identifier of an entry from the CPDB (ConsensusPathDB) biological + pathways database, which is an identifier from an external database integrated + into CPDB. + meaning: edam:data_1160 + title: Pathway ID (CPDB) + edam:data_1161: + text: edam:data_1161 + description: Identifier of a biological pathway from the Panther Pathways + database. + meaning: edam:data_1161 + title: Pathway ID (Panther) + edam:data_1162: + text: edam:data_1162 + description: Unique identifier of a MIRIAM data resource. + meaning: edam:data_1162 + title: MIRIAM identifier + edam:data_1163: + text: edam:data_1163 + description: The name of a data type from the MIRIAM database. + meaning: edam:data_1163 + title: MIRIAM data type name + edam:data_1164: + text: edam:data_1164 + description: The URI (URL or URN) of a data entity from the MIRIAM database. + meaning: edam:data_1164 + title: MIRIAM URI + edam:data_1165: + text: edam:data_1165 + description: The primary name of a data type from the MIRIAM database. + meaning: edam:data_1165 + title: MIRIAM data type primary name + edam:data_1166: + text: edam:data_1166 + description: A synonymous name of a data type from the MIRIAM database. + meaning: edam:data_1166 + title: MIRIAM data type synonymous name + edam:data_1167: + text: edam:data_1167 + description: Unique identifier of a Taverna workflow. + meaning: edam:data_1167 + title: Taverna workflow ID + edam:data_1170: + text: edam:data_1170 + description: Name of a biological (mathematical) model. + meaning: edam:data_1170 + title: Biological model name + edam:data_1171: + text: edam:data_1171 + description: Unique identifier of an entry from the BioModel database. + meaning: edam:data_1171 + title: BioModel ID + edam:data_1172: + text: edam:data_1172 + description: Chemical structure specified in PubChem Compound Identification + (CID), a non-zero integer identifier for a unique chemical structure. + meaning: edam:data_1172 + title: PubChem CID + edam:data_1173: + text: edam:data_1173 + description: Identifier of an entry from the ChemSpider database. + meaning: edam:data_1173 + title: ChemSpider ID + edam:data_1174: + text: edam:data_1174 + description: Identifier of an entry from the ChEBI database. + meaning: edam:data_1174 + title: ChEBI ID + edam:data_1175: + text: edam:data_1175 + description: An identifier of a concept from the BioPax ontology. + meaning: edam:data_1175 + title: BioPax concept ID + edam:data_1176: + text: edam:data_1176 + description: An identifier of a concept from The Gene Ontology. + meaning: edam:data_1176 + title: GO concept ID + edam:data_1177: + text: edam:data_1177 + description: An identifier of a concept from the MeSH vocabulary. + meaning: edam:data_1177 + title: MeSH concept ID + edam:data_1178: + text: edam:data_1178 + description: An identifier of a concept from the HGNC controlled vocabulary. + meaning: edam:data_1178 + title: HGNC concept ID + edam:data_1179: + text: edam:data_1179 + description: A stable unique identifier for each taxon (for a species, a family, + an order, or any other group in the NCBI taxonomy database. + meaning: edam:data_1179 + title: NCBI taxonomy ID + edam:data_1180: + text: edam:data_1180 + description: An identifier of a concept from the Plant Ontology (PO). + meaning: edam:data_1180 + title: Plant Ontology concept ID + edam:data_1181: + text: edam:data_1181 + description: An identifier of a concept from the UMLS vocabulary. + meaning: edam:data_1181 + title: UMLS concept ID + edam:data_1182: + text: edam:data_1182 + description: An identifier of a concept from Foundational Model of Anatomy. + meaning: edam:data_1182 + title: FMA concept ID + edam:data_1183: + text: edam:data_1183 + description: An identifier of a concept from the EMAP mouse ontology. + meaning: edam:data_1183 + title: EMAP concept ID + edam:data_1184: + text: edam:data_1184 + description: An identifier of a concept from the ChEBI ontology. + meaning: edam:data_1184 + title: ChEBI concept ID + edam:data_1185: + text: edam:data_1185 + description: An identifier of a concept from the MGED ontology. + meaning: edam:data_1185 + title: MGED concept ID + edam:data_1186: + text: edam:data_1186 + description: An identifier of a concept from the myGrid ontology. + meaning: edam:data_1186 + title: myGrid concept ID + edam:data_1187: + text: edam:data_1187 + description: PubMed unique identifier of an article. + meaning: edam:data_1187 + title: PubMed ID + edam:data_1188: + text: edam:data_1188 + description: Digital Object Identifier (DOI) of a published article. + meaning: edam:data_1188 + title: DOI + edam:data_1189: + text: edam:data_1189 + description: Medline UI (unique identifier) of an article. + meaning: edam:data_1189 + title: Medline UI + edam:data_1190: + text: edam:data_1190 + description: The name of a computer package, application, method or function. + meaning: edam:data_1190 + title: Tool name + edam:data_1191: + text: edam:data_1191 + description: The unique name of a signature (sequence classifier) method. + meaning: edam:data_1191 + title: Tool name (signature) + edam:data_1192: + text: edam:data_1192 + description: The name of a BLAST tool. + meaning: edam:data_1192 + title: Tool name (BLAST) + edam:data_1193: + text: edam:data_1193 + description: The name of a FASTA tool. + meaning: edam:data_1193 + title: Tool name (FASTA) + edam:data_1194: + text: edam:data_1194 + description: The name of an EMBOSS application. + meaning: edam:data_1194 + title: Tool name (EMBOSS) + edam:data_1195: + text: edam:data_1195 + description: The name of an EMBASSY package. + meaning: edam:data_1195 + title: Tool name (EMBASSY package) + edam:data_1201: + text: edam:data_1201 + description: A QSAR constitutional descriptor. + meaning: edam:data_1201 + title: QSAR descriptor (constitutional) + edam:data_1202: + text: edam:data_1202 + description: A QSAR electronic descriptor. + meaning: edam:data_1202 + title: QSAR descriptor (electronic) + edam:data_1203: + text: edam:data_1203 + description: A QSAR geometrical descriptor. + meaning: edam:data_1203 + title: QSAR descriptor (geometrical) + edam:data_1204: + text: edam:data_1204 + description: A QSAR topological descriptor. + meaning: edam:data_1204 + title: QSAR descriptor (topological) + edam:data_1205: + text: edam:data_1205 + description: A QSAR molecular descriptor. + meaning: edam:data_1205 + title: QSAR descriptor (molecular) + edam:data_1233: + text: edam:data_1233 + description: Any collection of multiple protein sequences and associated metadata + that do not (typically) correspond to common sequence database records or + database entries. + meaning: edam:data_1233 + title: Sequence set (protein) + edam:data_1234: + text: edam:data_1234 + description: Any collection of multiple nucleotide sequences and associated + metadata that do not (typically) correspond to common sequence database + records or database entries. + meaning: edam:data_1234 + title: Sequence set (nucleic acid) + edam:data_1235: + text: edam:data_1235 + description: A set of sequences that have been clustered or otherwise classified + as belonging to a group including (typically) sequence cluster information. + meaning: edam:data_1235 + title: Sequence cluster + edam:data_1238: + text: edam:data_1238 + description: A protein sequence cleaved into peptide fragments (by enzymatic + or chemical cleavage) with fragment masses. + meaning: edam:data_1238 + title: Proteolytic digest + edam:data_1239: + text: edam:data_1239 + description: Restriction digest fragments from digesting a nucleotide sequence + with restriction sites using a restriction endonuclease. + meaning: edam:data_1239 + title: Restriction digest + edam:data_1240: + text: edam:data_1240 + description: Oligonucleotide primer(s) for PCR and DNA amplification, for + example a minimal primer set. + meaning: edam:data_1240 + title: PCR primers + edam:data_1245: + text: edam:data_1245 + description: A cluster of protein sequences. + meaning: edam:data_1245 + title: Sequence cluster (protein) + edam:data_1246: + text: edam:data_1246 + description: A cluster of nucleotide sequences. + meaning: edam:data_1246 + title: Sequence cluster (nucleic acid) + edam:data_1249: + text: edam:data_1249 + description: The size (length) of a sequence, subsequence or region in a sequence, + or range(s) of lengths. + meaning: edam:data_1249 + title: Sequence length + edam:data_1254: + text: edam:data_1254 + description: An informative report about non-positional sequence features, + typically a report on general molecular sequence properties derived from + sequence analysis. + meaning: edam:data_1254 + title: Sequence property + edam:data_1255: + text: edam:data_1255 + description: Annotation of positional features of molecular sequence(s), i.e. + that can be mapped to position(s) in the sequence. + meaning: edam:data_1255 + title: Sequence features + edam:data_1259: + text: edam:data_1259 + description: A report on sequence complexity, for example low-complexity or + repeat regions in sequences. + meaning: edam:data_1259 + title: Sequence complexity report + edam:data_1260: + text: edam:data_1260 + description: A report on ambiguity in molecular sequence(s). + meaning: edam:data_1260 + title: Sequence ambiguity report + edam:data_1261: + text: edam:data_1261 + description: A report (typically a table) on character or word composition + / frequency of a molecular sequence(s). + meaning: edam:data_1261 + title: Sequence composition report + edam:data_1262: + text: edam:data_1262 + description: A report on peptide fragments of certain molecular weight(s) + in one or more protein sequences. + meaning: edam:data_1262 + title: Peptide molecular weight hits + edam:data_1263: + text: edam:data_1263 + description: A plot of third base position variability in a nucleotide sequence. + meaning: edam:data_1263 + title: Base position variability plot + edam:data_1265: + text: edam:data_1265 + description: A table of base frequencies of a nucleotide sequence. + meaning: edam:data_1265 + title: Base frequencies table + edam:data_1266: + text: edam:data_1266 + description: A table of word composition of a nucleotide sequence. + meaning: edam:data_1266 + title: Base word frequencies table + edam:data_1267: + text: edam:data_1267 + description: A table of amino acid frequencies of a protein sequence. + meaning: edam:data_1267 + title: Amino acid frequencies table + edam:data_1268: + text: edam:data_1268 + description: A table of amino acid word composition of a protein sequence. + meaning: edam:data_1268 + title: Amino acid word frequencies table + edam:data_1270: + text: edam:data_1270 + description: Annotation of positional sequence features, organised into a + standard feature table. + meaning: edam:data_1270 + title: Feature table + edam:data_1274: + text: edam:data_1274 + description: A map of (typically one) DNA sequence annotated with positional + or non-positional features. + meaning: edam:data_1274 + title: Map + edam:data_1276: + text: edam:data_1276 + description: An informative report on intrinsic positional features of a nucleotide + sequence, formatted to be machine-readable. + meaning: edam:data_1276 + title: Nucleic acid features + edam:data_1277: + text: edam:data_1277 + description: An informative report on intrinsic positional features of a protein + sequence. + meaning: edam:data_1277 + title: Protein features + edam:data_1278: + text: edam:data_1278 + description: A map showing the relative positions of genetic markers in a + nucleic acid sequence, based on estimation of non-physical distance such + as recombination frequencies. + meaning: edam:data_1278 + title: Genetic map + edam:data_1279: + text: edam:data_1279 + description: A map of genetic markers in a contiguous, assembled genomic sequence, + with the sizes and separation of markers measured in base pairs. + meaning: edam:data_1279 + title: Sequence map + edam:data_1280: + text: edam:data_1280 + description: A map of DNA (linear or circular) annotated with physical features + or landmarks such as restriction sites, cloned DNA fragments, genes or genetic + markers, along with the physical distances between them. + meaning: edam:data_1280 + title: Physical map + edam:data_1283: + text: edam:data_1283 + description: A map showing banding patterns derived from direct observation + of a stained chromosome. + meaning: edam:data_1283 + title: Cytogenetic map + edam:data_1284: + text: edam:data_1284 + description: A gene map showing distances between loci based on relative cotransduction + frequencies. + meaning: edam:data_1284 + title: DNA transduction map + edam:data_1285: + text: edam:data_1285 + description: Sequence map of a single gene annotated with genetic features + such as introns, exons, untranslated regions, polyA signals, promoters, + enhancers and (possibly) mutations defining alleles of a gene. + meaning: edam:data_1285 + title: Gene map + edam:data_1286: + text: edam:data_1286 + description: Sequence map of a plasmid (circular DNA). + meaning: edam:data_1286 + title: Plasmid map + edam:data_1288: + text: edam:data_1288 + description: Sequence map of a whole genome. + meaning: edam:data_1288 + title: Genome map + edam:data_1289: + text: edam:data_1289 + description: Image of the restriction enzyme cleavage sites (restriction sites) + in a nucleic acid sequence. + meaning: edam:data_1289 + title: Restriction map + edam:data_1347: + text: edam:data_1347 + description: Dirichlet distribution used by hidden Markov model analysis programs. + meaning: edam:data_1347 + title: Dirichlet distribution + edam:data_1352: + text: edam:data_1352 + description: Regular expression pattern. + meaning: edam:data_1352 + title: Regular expression + edam:data_1353: + text: edam:data_1353 + description: Any specific or conserved pattern (typically expressed as a regular + expression) in a molecular sequence. + meaning: edam:data_1353 + title: Sequence motif + edam:data_1354: + text: edam:data_1354 + description: Some type of statistical model representing a (typically multiple) + sequence alignment. + meaning: edam:data_1354 + title: Sequence profile + edam:data_1355: + text: edam:data_1355 + description: An informative report about a specific or conserved protein sequence + pattern. + meaning: edam:data_1355 + title: Protein signature + edam:data_1361: + text: edam:data_1361 + description: A profile (typically representing a sequence alignment) that + is a simple matrix of nucleotide (or amino acid) counts per position. + meaning: edam:data_1361 + title: Position frequency matrix + edam:data_1362: + text: edam:data_1362 + description: A profile (typically representing a sequence alignment) that + is weighted matrix of nucleotide (or amino acid) counts per position. + meaning: edam:data_1362 + title: Position weight matrix + edam:data_1363: + text: edam:data_1363 + description: A profile (typically representing a sequence alignment) derived + from a matrix of nucleotide (or amino acid) counts per position that reflects + information content at each position. + meaning: edam:data_1363 + title: Information content matrix + edam:data_1364: + text: edam:data_1364 + description: A statistical Markov model of a system which is assumed to be + a Markov process with unobserved (hidden) states. For example, a hidden + Markov model representation of a set or alignment of sequences. + meaning: edam:data_1364 + title: Hidden Markov model + edam:data_1365: + text: edam:data_1365 + description: One or more fingerprints (sequence classifiers) as used in the + PRINTS database. + meaning: edam:data_1365 + title: Fingerprint + edam:data_1381: + text: edam:data_1381 + description: Alignment of exactly two molecular sequences. + meaning: edam:data_1381 + title: Pair sequence alignment + edam:data_1383: + text: edam:data_1383 + description: Alignment of multiple nucleotide sequences. + meaning: edam:data_1383 + title: Nucleic acid sequence alignment + edam:data_1384: + text: edam:data_1384 + description: Alignment of multiple protein sequences. + meaning: edam:data_1384 + title: Protein sequence alignment + edam:data_1385: + text: edam:data_1385 + description: Alignment of multiple molecular sequences of different types. + meaning: edam:data_1385 + title: Hybrid sequence alignment + edam:data_1394: + text: edam:data_1394 + description: A simple floating point number defining the penalty for opening + or extending a gap in an alignment. + meaning: edam:data_1394 + title: Alignment score or penalty + edam:data_1397: + text: edam:data_1397 + description: A penalty for opening a gap in an alignment. + meaning: edam:data_1397 + title: Gap opening penalty + edam:data_1398: + text: edam:data_1398 + description: A penalty for extending a gap in an alignment. + meaning: edam:data_1398 + title: Gap extension penalty + edam:data_1399: + text: edam:data_1399 + description: A penalty for gaps that are close together in an alignment. + meaning: edam:data_1399 + title: Gap separation penalty + edam:data_1401: + text: edam:data_1401 + description: The score for a 'match' used in various sequence database search + applications with simple scoring schemes. + meaning: edam:data_1401 + title: Match reward score + edam:data_1402: + text: edam:data_1402 + description: The score (penalty) for a 'mismatch' used in various alignment + and sequence database search applications with simple scoring schemes. + meaning: edam:data_1402 + title: Mismatch penalty score + edam:data_1403: + text: edam:data_1403 + description: This is the threshold drop in score at which extension of word + alignment is halted. + meaning: edam:data_1403 + title: Drop off score + edam:data_1410: + text: edam:data_1410 + description: A number defining the penalty for opening gaps at the termini + of an alignment, either from the N/C terminal of protein or 5'/3' terminal + of nucleotide sequences. + meaning: edam:data_1410 + title: Terminal gap opening penalty + edam:data_1411: + text: edam:data_1411 + description: A number defining the penalty for extending gaps at the termini + of an alignment, either from the N/C terminal of protein or 5'/3' terminal + of nucleotide sequences. + meaning: edam:data_1411 + title: Terminal gap extension penalty + edam:data_1412: + text: edam:data_1412 + description: Sequence identity is the number (%) of matches (identical characters) + in positions from an alignment of two molecular sequences. + meaning: edam:data_1412 + title: Sequence identity + edam:data_1413: + text: edam:data_1413 + description: Sequence similarity is the similarity (expressed as a percentage) + of two molecular sequences calculated from their alignment, a scoring matrix + for scoring characters substitutions and penalties for gap insertion and + extension. + meaning: edam:data_1413 + title: Sequence similarity + edam:data_1426: + text: edam:data_1426 + description: Continuous quantitative data that may be read during phylogenetic + tree calculation. + meaning: edam:data_1426 + title: Phylogenetic continuous quantitative data + edam:data_1427: + text: edam:data_1427 + description: Character data with discrete states that may be read during phylogenetic + tree calculation. + meaning: edam:data_1427 + title: Phylogenetic discrete data + edam:data_1428: + text: edam:data_1428 + description: One or more cliques of mutually compatible characters that are + generated, for example from analysis of discrete character data, and are + used to generate a phylogeny. + meaning: edam:data_1428 + title: Phylogenetic character cliques + edam:data_1429: + text: edam:data_1429 + description: Phylogenetic invariants data for testing alternative tree topologies. + meaning: edam:data_1429 + title: Phylogenetic invariants + edam:data_1439: + text: edam:data_1439 + description: A model of DNA substitution that explains a DNA sequence alignment, + derived from phylogenetic tree analysis. + meaning: edam:data_1439 + title: DNA substitution model + edam:data_1442: + text: edam:data_1442 + description: Distances, such as Branch Score distance, between two or more + phylogenetic trees. + meaning: edam:data_1442 + title: Phylogenetic tree distances + edam:data_1444: + text: edam:data_1444 + description: Independent contrasts for characters used in a phylogenetic tree, + or covariances, regressions and correlations between characters for those + contrasts. + meaning: edam:data_1444 + title: Phylogenetic character contrasts + edam:data_1448: + text: edam:data_1448 + description: Matrix of integer or floating point numbers for nucleotide comparison. + meaning: edam:data_1448 + title: Comparison matrix (nucleotide) + edam:data_1449: + text: edam:data_1449 + description: Matrix of integer or floating point numbers for amino acid comparison. + meaning: edam:data_1449 + title: Comparison matrix (amino acid) + edam:data_1459: + text: edam:data_1459 + description: 3D coordinate and associated data for a nucleic acid tertiary + (3D) structure. + meaning: edam:data_1459 + title: Nucleic acid structure + edam:data_1460: + text: edam:data_1460 + description: 3D coordinate and associated data for a protein tertiary (3D) + structure, or part of a structure, possibly in complex with other molecules. + meaning: edam:data_1460 + title: Protein structure + edam:data_1461: + text: edam:data_1461 + description: The structure of a protein in complex with a ligand, typically + a small molecule such as an enzyme substrate or cofactor, but possibly another + macromolecule. + meaning: edam:data_1461 + title: Protein-ligand complex + edam:data_1462: + text: edam:data_1462 + description: 3D coordinate and associated data for a carbohydrate (3D) structure. + meaning: edam:data_1462 + title: Carbohydrate structure + edam:data_1463: + text: edam:data_1463 + description: 3D coordinate and associated data for the (3D) structure of a + small molecule, such as any common chemical compound. + meaning: edam:data_1463 + title: Small molecule structure + edam:data_1464: + text: edam:data_1464 + description: 3D coordinate and associated data for a DNA tertiary (3D) structure. + meaning: edam:data_1464 + title: DNA structure + edam:data_1465: + text: edam:data_1465 + description: 3D coordinate and associated data for an RNA tertiary (3D) structure. + meaning: edam:data_1465 + title: RNA structure + edam:data_1466: + text: edam:data_1466 + description: 3D coordinate and associated data for a tRNA tertiary (3D) structure, + including tmRNA, snoRNAs etc. + meaning: edam:data_1466 + title: tRNA structure + edam:data_1467: + text: edam:data_1467 + description: 3D coordinate and associated data for the tertiary (3D) structure + of a polypeptide chain. + meaning: edam:data_1467 + title: Protein chain + edam:data_1468: + text: edam:data_1468 + description: 3D coordinate and associated data for the tertiary (3D) structure + of a protein domain. + meaning: edam:data_1468 + title: Protein domain + edam:data_1470: + text: edam:data_1470 + description: 3D coordinate and associated data for a protein tertiary (3D) + structure (typically C-alpha atoms only). + meaning: edam:data_1470 + title: C-alpha trace + edam:data_1479: + text: edam:data_1479 + description: Alignment (superimposition) of exactly two molecular tertiary + (3D) structures. + meaning: edam:data_1479 + title: Structure alignment (pair) + edam:data_1481: + text: edam:data_1481 + description: Alignment (superimposition) of protein tertiary (3D) structures. + meaning: edam:data_1481 + title: Protein structure alignment + edam:data_1482: + text: edam:data_1482 + description: Alignment (superimposition) of nucleic acid tertiary (3D) structures. + meaning: edam:data_1482 + title: Nucleic acid structure alignment + edam:data_1493: + text: edam:data_1493 + description: Alignment (superimposition) of RNA tertiary (3D) structures. + meaning: edam:data_1493 + title: RNA structure alignment + edam:data_1494: + text: edam:data_1494 + description: Matrix to transform (rotate/translate) 3D coordinates, typically + the transformation necessary to superimpose two molecular structures. + meaning: edam:data_1494 + title: Structural transformation matrix + edam:data_1497: + text: edam:data_1497 + description: Root-mean-square deviation (RMSD) is calculated to measure the + average distance between superimposed macromolecular coordinates. + meaning: edam:data_1497 + title: Root-mean-square deviation + edam:data_1498: + text: edam:data_1498 + description: A measure of the similarity between two ligand fingerprints. + meaning: edam:data_1498 + title: Tanimoto similarity score + edam:data_1499: + text: edam:data_1499 + description: A matrix of 3D-1D scores reflecting the probability of amino + acids to occur in different tertiary structural environments. + meaning: edam:data_1499 + title: 3D-1D scoring matrix + edam:data_1501: + text: edam:data_1501 + description: A table of 20 numerical values which quantify a property (e.g. + physicochemical or biochemical) of the common amino acids. + meaning: edam:data_1501 + title: Amino acid index + edam:data_1502: + text: edam:data_1502 + description: Chemical classification (small, aliphatic, aromatic, polar, charged + etc) of amino acids. + meaning: edam:data_1502 + title: Amino acid index (chemical classes) + edam:data_1503: + text: edam:data_1503 + description: Statistical protein contact potentials. + meaning: edam:data_1503 + title: Amino acid pair-wise contact potentials + edam:data_1505: + text: edam:data_1505 + description: Molecular weights of amino acids. + meaning: edam:data_1505 + title: Amino acid index (molecular weight) + edam:data_1506: + text: edam:data_1506 + description: Hydrophobic, hydrophilic or charge properties of amino acids. + meaning: edam:data_1506 + title: Amino acid index (hydropathy) + edam:data_1507: + text: edam:data_1507 + description: Experimental free energy values for the water-interface and water-octanol + transitions for the amino acids. + meaning: edam:data_1507 + title: Amino acid index (White-Wimley data) + edam:data_1508: + text: edam:data_1508 + description: Van der Waals radii of atoms for different amino acid residues. + meaning: edam:data_1508 + title: Amino acid index (van der Waals radii) + edam:data_1519: + text: edam:data_1519 + description: List of molecular weight(s) of one or more proteins or peptides, + for example cut by proteolytic enzymes or reagents. + meaning: edam:data_1519 + title: Peptide molecular weights + edam:data_1520: + text: edam:data_1520 + description: Report on the hydrophobic moment of a polypeptide sequence. + meaning: edam:data_1520 + title: Peptide hydrophobic moment + edam:data_1521: + text: edam:data_1521 + description: The aliphatic index of a protein. + meaning: edam:data_1521 + title: Protein aliphatic index + edam:data_1522: + text: edam:data_1522 + description: A protein sequence with annotation on hydrophobic or hydrophilic + / charged regions, hydrophobicity plot etc. + meaning: edam:data_1522 + title: Protein sequence hydropathy plot + edam:data_1523: + text: edam:data_1523 + description: A plot of the mean charge of the amino acids within a window + of specified length as the window is moved along a protein sequence. + meaning: edam:data_1523 + title: Protein charge plot + edam:data_1524: + text: edam:data_1524 + description: The solubility or atomic solvation energy of a protein sequence + or structure. + meaning: edam:data_1524 + title: Protein solubility + edam:data_1525: + text: edam:data_1525 + description: Data on the crystallizability of a protein sequence. + meaning: edam:data_1525 + title: Protein crystallizability + edam:data_1526: + text: edam:data_1526 + description: Data on the stability, intrinsic disorder or globularity of a + protein sequence. + meaning: edam:data_1526 + title: Protein globularity + edam:data_1527: + text: edam:data_1527 + description: The titration curve of a protein. + meaning: edam:data_1527 + title: Protein titration curve + edam:data_1528: + text: edam:data_1528 + description: The isoelectric point of one proteins. + meaning: edam:data_1528 + title: Protein isoelectric point + edam:data_1529: + text: edam:data_1529 + description: The pKa value of a protein. + meaning: edam:data_1529 + title: Protein pKa value + edam:data_1530: + text: edam:data_1530 + description: The hydrogen exchange rate of a protein. + meaning: edam:data_1530 + title: Protein hydrogen exchange rate + edam:data_1531: + text: edam:data_1531 + description: The extinction coefficient of a protein. + meaning: edam:data_1531 + title: Protein extinction coefficient + edam:data_1532: + text: edam:data_1532 + description: The optical density of a protein. + meaning: edam:data_1532 + title: Protein optical density + edam:data_1534: + text: edam:data_1534 + description: An report on allergenicity / immunogenicity of peptides and proteins. + meaning: edam:data_1534 + title: Peptide immunogenicity data + edam:data_1537: + text: edam:data_1537 + description: A human-readable collection of information about one or more + specific protein 3D structure(s) or structural domains. + meaning: edam:data_1537 + title: Protein structure report + edam:data_1539: + text: edam:data_1539 + description: Report on the quality of a protein three-dimensional model. + meaning: edam:data_1539 + title: Protein structural quality report + edam:data_1542: + text: edam:data_1542 + description: Data on the solvent accessible or buried surface area of a protein + structure. + meaning: edam:data_1542 + title: Protein solvent accessibility + edam:data_1544: + text: edam:data_1544 + description: Phi/psi angle data or a Ramachandran plot of a protein structure. + meaning: edam:data_1544 + title: Ramachandran plot + edam:data_1545: + text: edam:data_1545 + description: Data on the net charge distribution (dipole moment) of a protein + structure. + meaning: edam:data_1545 + title: Protein dipole moment + edam:data_1546: + text: edam:data_1546 + description: A matrix of distances between amino acid residues (for example + the C-alpha atoms) in a protein structure. + meaning: edam:data_1546 + title: Protein distance matrix + edam:data_1547: + text: edam:data_1547 + description: An amino acid residue contact map for a protein structure. + meaning: edam:data_1547 + title: Protein contact map + edam:data_1548: + text: edam:data_1548 + description: Report on clusters of contacting residues in protein structures + such as a key structural residue network. + meaning: edam:data_1548 + title: Protein residue 3D cluster + edam:data_1549: + text: edam:data_1549 + description: Patterns of hydrogen bonding in protein structures. + meaning: edam:data_1549 + title: Protein hydrogen bonds + edam:data_1566: + text: edam:data_1566 + description: An informative report on protein-ligand (small molecule) interaction(s). + meaning: edam:data_1566 + title: Protein-ligand interaction report + edam:data_1583: + text: edam:data_1583 + description: Data on the dissociation characteristics of a double-stranded + nucleic acid molecule (DNA or a DNA/RNA hybrid) during heating. + meaning: edam:data_1583 + title: Nucleic acid melting profile + edam:data_1584: + text: edam:data_1584 + description: Enthalpy of hybridised or double stranded nucleic acid (DNA or + RNA/DNA). + meaning: edam:data_1584 + title: Nucleic acid enthalpy + edam:data_1585: + text: edam:data_1585 + description: Entropy of hybridised or double stranded nucleic acid (DNA or + RNA/DNA). + meaning: edam:data_1585 + title: Nucleic acid entropy + edam:data_1588: + text: edam:data_1588 + description: DNA base pair stacking energies data. + meaning: edam:data_1588 + title: DNA base pair stacking energies data + edam:data_1589: + text: edam:data_1589 + description: DNA base pair twist angle data. + meaning: edam:data_1589 + title: DNA base pair twist angle data + edam:data_1590: + text: edam:data_1590 + description: DNA base trimer roll angles data. + meaning: edam:data_1590 + title: DNA base trimer roll angles data + edam:data_1595: + text: edam:data_1595 + description: Dotplot of RNA base pairing probability matrix. + meaning: edam:data_1595 + title: Base pairing probability matrix dotplot + edam:data_1596: + text: edam:data_1596 + description: A human-readable collection of information about RNA/DNA folding, + minimum folding energies for DNA or RNA sequences, energy landscape of RNA + mutants etc. + meaning: edam:data_1596 + title: Nucleic acid folding report + edam:data_1597: + text: edam:data_1597 + description: Table of codon usage data calculated from one or more nucleic + acid sequences. + meaning: edam:data_1597 + title: Codon usage table + edam:data_1598: + text: edam:data_1598 + description: A genetic code for an organism. + meaning: edam:data_1598 + title: Genetic code + edam:data_1600: + text: edam:data_1600 + description: A plot of the synonymous codon usage calculated for windows over + a nucleotide sequence. + meaning: edam:data_1600 + title: Codon usage bias plot + edam:data_1602: + text: edam:data_1602 + description: The differences in codon usage fractions between two codon usage + tables. + meaning: edam:data_1602 + title: Codon usage fraction difference + edam:data_1621: + text: edam:data_1621 + description: A human-readable collection of information about the influence + of genotype on drug response. + meaning: edam:data_1621 + title: Pharmacogenomic test report + edam:data_1622: + text: edam:data_1622 + description: A human-readable collection of information about a specific disease. + meaning: edam:data_1622 + title: Disease report + edam:data_1636: + text: edam:data_1636 + description: A graphical 2D tabular representation of expression data, typically + derived from an omics experiment. A heat map is a table where rows and columns + correspond to different features and contexts (for example, cells or samples) + and the cell colour represents the level of expression of a gene that context. + meaning: edam:data_1636 + title: Heat map + edam:data_1667: + text: edam:data_1667 + description: A simple floating point number defining the lower or upper limit + of an expectation value (E-value). + meaning: edam:data_1667 + title: E-value + edam:data_1668: + text: edam:data_1668 + description: The z-value is the number of standard deviations a data value + is above or below a mean value. + meaning: edam:data_1668 + title: Z-value + edam:data_1669: + text: edam:data_1669 + description: The P-value is the probability of obtaining by random chance + a result that is at least as extreme as an observed result, assuming a NULL + hypothesis is true. + meaning: edam:data_1669 + title: P-value + edam:data_1689: + text: edam:data_1689 + description: A username on a computer system or a website. + meaning: edam:data_1689 + title: Username + edam:data_1690: + text: edam:data_1690 + description: A password on a computer system, or a website. + meaning: edam:data_1690 + title: Password + edam:data_1691: + text: edam:data_1691 + description: A valid email address of an end-user. + meaning: edam:data_1691 + title: Email address + edam:data_1692: + text: edam:data_1692 + description: The name of a person. + meaning: edam:data_1692 + title: Person name + edam:data_1696: + text: edam:data_1696 + description: A human-readable collection of information about a specific drug. + meaning: edam:data_1696 + title: Drug report + edam:data_1707: + text: edam:data_1707 + description: An image (for viewing or printing) of a phylogenetic tree including + (typically) a plot of rooted or unrooted phylogenies, cladograms, circular + trees or phenograms and associated information. + meaning: edam:data_1707 + title: Phylogenetic tree image + edam:data_1708: + text: edam:data_1708 + description: Image of RNA secondary structure, knots, pseudoknots etc. + meaning: edam:data_1708 + title: RNA secondary structure image + edam:data_1709: + text: edam:data_1709 + description: Image of protein secondary structure. + meaning: edam:data_1709 + title: Protein secondary structure image + edam:data_1710: + text: edam:data_1710 + description: Image of one or more molecular tertiary (3D) structures. + meaning: edam:data_1710 + title: Structure image + edam:data_1711: + text: edam:data_1711 + description: Image of two or more aligned molecular sequences possibly annotated + with alignment features. + meaning: edam:data_1711 + title: Sequence alignment image + edam:data_1712: + text: edam:data_1712 + description: An image of the structure of a small chemical compound. + meaning: edam:data_1712 + title: Chemical structure image + edam:data_1713: + text: edam:data_1713 + description: A fate map is a plan of early stage of an embryo such as a blastula, + showing areas that are significance to development. + meaning: edam:data_1713 + title: Fate map + edam:data_1714: + text: edam:data_1714 + description: An image of spots from a microarray experiment. + meaning: edam:data_1714 + title: Microarray spots image + edam:data_1731: + text: edam:data_1731 + description: The definition of a concept from an ontology. + meaning: edam:data_1731 + title: Ontology concept definition + edam:data_1742: + text: edam:data_1742 + description: A residue identifier (a string) from a PDB file. + meaning: edam:data_1742 + title: PDB residue number + edam:data_1743: + text: edam:data_1743 + description: Cartesian coordinate of an atom (in a molecular structure). + meaning: edam:data_1743 + title: Atomic coordinate + edam:data_1748: + text: edam:data_1748 + description: Identifier (a string) of a specific atom from a PDB file for + a molecular structure. + meaning: edam:data_1748 + title: PDB atom name + edam:data_1755: + text: edam:data_1755 + description: Data on a single atom from a protein structure. + meaning: edam:data_1755 + title: Protein atom + edam:data_1756: + text: edam:data_1756 + description: Data on a single amino acid residue position in a protein structure. + meaning: edam:data_1756 + title: Protein residue + edam:data_1757: + text: edam:data_1757 + description: Name of an atom. + meaning: edam:data_1757 + title: Atom name + edam:data_1758: + text: edam:data_1758 + description: Three-letter amino acid residue names as used in PDB files. + meaning: edam:data_1758 + title: PDB residue name + edam:data_1759: + text: edam:data_1759 + description: Identifier of a model structure from a PDB file. + meaning: edam:data_1759 + title: PDB model number + edam:data_1771: + text: edam:data_1771 + description: Information on an molecular sequence version. + meaning: edam:data_1771 + title: Sequence version + edam:data_1772: + text: edam:data_1772 + description: A numerical value, that is some type of scored value arising + for example from a prediction method. + meaning: edam:data_1772 + title: Score + edam:data_1794: + text: edam:data_1794 + description: Identifier of a gene from PlasmoDB Plasmodium Genome Resource. + meaning: edam:data_1794 + title: Gene ID (PlasmoDB) + edam:data_1795: + text: edam:data_1795 + description: Identifier of a gene from EcoGene Database. + meaning: edam:data_1795 + title: Gene ID (EcoGene) + edam:data_1796: + text: edam:data_1796 + description: Gene identifier from FlyBase database. + meaning: edam:data_1796 + title: Gene ID (FlyBase) + edam:data_1802: + text: edam:data_1802 + description: Gene identifier from Gramene database. + meaning: edam:data_1802 + title: Gene ID (Gramene) + edam:data_1803: + text: edam:data_1803 + description: Gene identifier from Virginia Bioinformatics Institute microbial + database. + meaning: edam:data_1803 + title: Gene ID (Virginia microbial) + edam:data_1804: + text: edam:data_1804 + description: Gene identifier from Sol Genomics Network. + meaning: edam:data_1804 + title: Gene ID (SGN) + edam:data_1805: + text: edam:data_1805 + description: Gene identifier used by WormBase database. + meaning: edam:data_1805 + title: Gene ID (WormBase) + edam:data_1807: + text: edam:data_1807 + description: The name of an open reading frame attributed by a sequencing + project. + meaning: edam:data_1807 + title: ORF name + edam:data_1855: + text: edam:data_1855 + description: An identifier of a clone (cloned molecular sequence) from a database. + meaning: edam:data_1855 + title: Clone ID + edam:data_1856: + text: edam:data_1856 + description: An insertion code (part of the residue number) for an amino acid + residue from a PDB file. + meaning: edam:data_1856 + title: PDB insertion code + edam:data_1857: + text: edam:data_1857 + description: The fraction of an atom type present at a site in a molecular + structure. + meaning: edam:data_1857 + title: Atomic occupancy + edam:data_1858: + text: edam:data_1858 + description: Isotropic B factor (atomic displacement parameter) for an atom + from a PDB file. + meaning: edam:data_1858 + title: Isotropic B factor + edam:data_1859: + text: edam:data_1859 + description: A cytogenetic map showing chromosome banding patterns in mutant + cell lines relative to the wild type. + meaning: edam:data_1859 + title: Deletion map + edam:data_1860: + text: edam:data_1860 + description: A genetic map which shows the approximate location of quantitative + trait loci (QTL) between two or more markers. + meaning: edam:data_1860 + title: QTL map + edam:data_1863: + text: edam:data_1863 + description: A map of haplotypes in a genome or other sequence, describing + common patterns of genetic variation. + meaning: edam:data_1863 + title: Haplotype map + edam:data_1867: + text: edam:data_1867 + description: The name of a protein fold. + meaning: edam:data_1867 + title: Protein fold name + edam:data_1868: + text: edam:data_1868 + description: The name of a group of organisms belonging to the same taxonomic + rank. + meaning: edam:data_1868 + title: Taxon + edam:data_1869: + text: edam:data_1869 + description: A unique identifier of a (group of) organisms. + meaning: edam:data_1869 + title: Organism identifier + edam:data_1870: + text: edam:data_1870 + description: The name of a genus of organism. + meaning: edam:data_1870 + title: Genus name + edam:data_1872: + text: edam:data_1872 + description: The full name for a group of organisms, reflecting their biological + classification and (usually) conforming to a standard nomenclature. + meaning: edam:data_1872 + title: Taxonomic classification + edam:data_1873: + text: edam:data_1873 + description: A unique identifier for an organism used in the iHOP database. + meaning: edam:data_1873 + title: iHOP organism ID + edam:data_1874: + text: edam:data_1874 + description: Common name for an organism as used in the GenBank database. + meaning: edam:data_1874 + title: Genbank common name + edam:data_1875: + text: edam:data_1875 + description: The name of a taxon from the NCBI taxonomy database. + meaning: edam:data_1875 + title: NCBI taxon + edam:data_1881: + text: edam:data_1881 + description: Information on the authors of a published work. + meaning: edam:data_1881 + title: Author ID + edam:data_1882: + text: edam:data_1882 + description: An identifier representing an author in the DragonDB database. + meaning: edam:data_1882 + title: DragonDB author identifier + edam:data_1883: + text: edam:data_1883 + description: A URI along with annotation describing the data found at the + address. + meaning: edam:data_1883 + title: Annotated URI + edam:data_1885: + text: edam:data_1885 + description: Identifier of a gene from the GeneFarm database. + meaning: edam:data_1885 + title: Gene ID (GeneFarm) + edam:data_1886: + text: edam:data_1886 + description: The blattner identifier for a gene. + meaning: edam:data_1886 + title: Blattner number + edam:data_1891: + text: edam:data_1891 + description: A unique identifier of a protein or gene used in the iHOP database. + meaning: edam:data_1891 + title: iHOP symbol + edam:data_1893: + text: edam:data_1893 + description: A unique name or other identifier of a genetic locus, typically + conforming to a scheme that names loci (such as predicted genes) depending + on their position in a molecular sequence, for example a completely sequenced + genome or chromosome. + meaning: edam:data_1893 + title: Locus ID + edam:data_1895: + text: edam:data_1895 + description: Locus identifier for Arabidopsis Genome Initiative (TAIR, TIGR + and MIPS databases). + meaning: edam:data_1895 + title: Locus ID (AGI) + edam:data_1896: + text: edam:data_1896 + description: Identifier for loci from ASPGD (Aspergillus Genome Database). + meaning: edam:data_1896 + title: Locus ID (ASPGD) + edam:data_1897: + text: edam:data_1897 + description: Identifier for loci from Magnaporthe grisea Database at the Broad + Institute. + meaning: edam:data_1897 + title: Locus ID (MGG) + edam:data_1898: + text: edam:data_1898 + description: Identifier for loci from CGD (Candida Genome Database). + meaning: edam:data_1898 + title: Locus ID (CGD) + edam:data_1899: + text: edam:data_1899 + description: Locus identifier for Comprehensive Microbial Resource at the + J. Craig Venter Institute. + meaning: edam:data_1899 + title: Locus ID (CMR) + edam:data_1900: + text: edam:data_1900 + description: Identifier for loci from NCBI database. + meaning: edam:data_1900 + title: NCBI locus tag + edam:data_1901: + text: edam:data_1901 + description: Identifier for loci from SGD (Saccharomyces Genome Database). + meaning: edam:data_1901 + title: Locus ID (SGD) + edam:data_1902: + text: edam:data_1902 + description: Identifier of loci from Maize Mapping Project. + meaning: edam:data_1902 + title: Locus ID (MMP) + edam:data_1903: + text: edam:data_1903 + description: Identifier of locus from DictyBase (Dictyostelium discoideum). + meaning: edam:data_1903 + title: Locus ID (DictyBase) + edam:data_1904: + text: edam:data_1904 + description: Identifier of a locus from EntrezGene database. + meaning: edam:data_1904 + title: Locus ID (EntrezGene) + edam:data_1905: + text: edam:data_1905 + description: Identifier of locus from MaizeGDB (Maize genome database). + meaning: edam:data_1905 + title: Locus ID (MaizeGDB) + edam:data_1907: + text: edam:data_1907 + description: Identifier of a gene from the KOME database. + meaning: edam:data_1907 + title: Gene ID (KOME) + edam:data_1908: + text: edam:data_1908 + description: Identifier of a locus from the Tropgene database. + meaning: edam:data_1908 + title: Locus ID (Tropgene) + edam:data_1916: + text: edam:data_1916 + description: An alignment of molecular sequences, structures or profiles derived + from them. + meaning: edam:data_1916 + title: Alignment + edam:data_1917: + text: edam:data_1917 + description: Data for an atom (in a molecular structure). + meaning: edam:data_1917 + title: Atomic property + edam:data_2007: + text: edam:data_2007 + description: A word or phrase that can appear in the keywords field (KW line) + of entries from the UniProt database. + meaning: edam:data_2007 + title: UniProt keyword + edam:data_2012: + text: edam:data_2012 + description: A position in a map (for example a genetic map), either a single + position (point) or a region / interval. + meaning: edam:data_2012 + title: Sequence coordinates + edam:data_2016: + text: edam:data_2016 + description: Data concerning the intrinsic physical (e.g. structural) or chemical + properties of one, more or all amino acids. + meaning: edam:data_2016 + title: Amino acid property + edam:data_2019: + text: edam:data_2019 + description: Data describing a molecular map (genetic or physical) or a set + of such maps, including various attributes of, data extracted from or derived + from the analysis of them, but excluding the map(s) themselves. This includes + metadata for map sets that share a common set of features which are mapped. + meaning: edam:data_2019 + title: Map data + edam:data_2024: + text: edam:data_2024 + description: Data concerning chemical reaction(s) catalysed by enzyme(s). + meaning: edam:data_2024 + title: Enzyme kinetics data + edam:data_2025: + text: edam:data_2025 + description: A plot giving an approximation of the kinetics of an enzyme-catalysed + reaction, assuming simple kinetics (i.e. no intermediate or product inhibition, + allostericity or cooperativity). It plots initial reaction rate to the substrate + concentration (S) from which the maximum rate (vmax) is apparent. + meaning: edam:data_2025 + title: Michaelis Menten plot + edam:data_2026: + text: edam:data_2026 + description: A plot based on the Michaelis Menten equation of enzyme kinetics + plotting the ratio of the initial substrate concentration (S) against the + reaction velocity (v). + meaning: edam:data_2026 + title: Hanes Woolf plot + edam:data_2042: + text: edam:data_2042 + description: Typically a human-readable summary of body of facts or information + indicating why a statement is true or valid. This may include a computational + prediction, laboratory experiment, literature reference etc. + meaning: edam:data_2042 + title: Evidence + edam:data_2044: + text: edam:data_2044 + description: One or more molecular sequences, possibly with associated annotation. + meaning: edam:data_2044 + title: Sequence + edam:data_2048: + text: edam:data_2048 + description: A human-readable collection of information including annotation + on a biological entity or phenomena, computer-generated reports of analysis + of primary data (e.g. sequence or structural), and metadata (data about + primary data) or any other free (essentially unformatted) text, as distinct + from the primary data itself. + meaning: edam:data_2048 + title: Report + edam:data_2050: + text: edam:data_2050 + description: General data for a molecule. + meaning: edam:data_2050 + title: Molecular property (general) + edam:data_2070: + text: edam:data_2070 + description: A nucleotide sequence motif. + meaning: edam:data_2070 + title: Sequence motif (nucleic acid) + edam:data_2071: + text: edam:data_2071 + description: An amino acid sequence motif. + meaning: edam:data_2071 + title: Sequence motif (protein) + edam:data_2080: + text: edam:data_2080 + description: A report of hits from searching a database of some type. + meaning: edam:data_2080 + title: Database search results + edam:data_2082: + text: edam:data_2082 + description: An array of numerical values. + meaning: edam:data_2082 + title: Matrix + edam:data_2084: + text: edam:data_2084 + description: A human-readable collection of information about one or more + specific nucleic acid molecules. + meaning: edam:data_2084 + title: Nucleic acid report + edam:data_2085: + text: edam:data_2085 + description: A human-readable collection of information about one or more + molecular tertiary (3D) structures. It might include annotation on the structure, + a computer-generated report of analysis of structural data, and metadata + (data about primary data) or any other free (essentially unformatted) text, + as distinct from the primary data itself. + meaning: edam:data_2085 + title: Structure report + edam:data_2087: + text: edam:data_2087 + description: A report on the physical (e.g. structural) or chemical properties + of molecules, or parts of a molecule. + meaning: edam:data_2087 + title: Molecular property + edam:data_2088: + text: edam:data_2088 + description: Structural data for DNA base pairs or runs of bases, such as + energy or angle data. + meaning: edam:data_2088 + title: DNA base structural data + edam:data_2091: + text: edam:data_2091 + description: A persistent (stable) and unique identifier, typically identifying + an object (entry) from a database. + meaning: edam:data_2091 + title: Accession + edam:data_2093: + text: edam:data_2093 + description: Reference to a dataset (or a cross-reference between two datasets), + typically one or more entries in a biological database or ontology. + meaning: edam:data_2093 + title: Data reference + edam:data_2098: + text: edam:data_2098 + description: An identifier of a submitted job. + meaning: edam:data_2098 + title: Job identifier + edam:data_2099: + text: edam:data_2099 + description: A name of a thing, which need not necessarily uniquely identify + it. + meaning: edam:data_2099 + title: Name + edam:data_2101: + text: edam:data_2101 + description: Authentication data usually used to log in into an account on + an information system such as a web application or a database. + meaning: edam:data_2101 + title: Account authentication + edam:data_2102: + text: edam:data_2102 + description: A three-letter code used in the KEGG databases to uniquely identify + organisms. + meaning: edam:data_2102 + title: KEGG organism code + edam:data_2104: + text: edam:data_2104 + description: Identifier of an object from one of the BioCyc databases. + meaning: edam:data_2104 + title: BioCyc ID + edam:data_2105: + text: edam:data_2105 + description: Identifier of a compound from the BioCyc chemical compounds database. + meaning: edam:data_2105 + title: Compound ID (BioCyc) + edam:data_2106: + text: edam:data_2106 + description: Identifier of a biological reaction from the BioCyc reactions + database. + meaning: edam:data_2106 + title: Reaction ID (BioCyc) + edam:data_2107: + text: edam:data_2107 + description: Identifier of an enzyme from the BioCyc enzymes database. + meaning: edam:data_2107 + title: Enzyme ID (BioCyc) + edam:data_2108: + text: edam:data_2108 + description: Identifier of a biological reaction from a database. + meaning: edam:data_2108 + title: Reaction ID + edam:data_2109: + text: edam:data_2109 + description: An identifier that is reused for data objects of fundamentally + different types (typically served from a single database). + meaning: edam:data_2109 + title: Identifier (hybrid) + edam:data_2110: + text: edam:data_2110 + description: Identifier of a molecular property. + meaning: edam:data_2110 + title: Molecular property identifier + edam:data_2111: + text: edam:data_2111 + description: Identifier of a codon usage table, for example a genetic code. + meaning: edam:data_2111 + title: Codon usage table ID + edam:data_2112: + text: edam:data_2112 + description: Primary identifier of an object from the FlyBase database. + meaning: edam:data_2112 + title: FlyBase primary identifier + edam:data_2113: + text: edam:data_2113 + description: Identifier of an object from the WormBase database. + meaning: edam:data_2113 + title: WormBase identifier + edam:data_2114: + text: edam:data_2114 + description: Protein identifier used by WormBase database. + meaning: edam:data_2114 + title: WormBase wormpep ID + edam:data_2117: + text: edam:data_2117 + description: An identifier of a map of a molecular sequence. + meaning: edam:data_2117 + title: Map identifier + edam:data_2118: + text: edam:data_2118 + description: An identifier of a software end-user on a website or a database + (typically a person or an entity). + meaning: edam:data_2118 + title: Person identifier + edam:data_2119: + text: edam:data_2119 + description: Name or other identifier of a nucleic acid molecule. + meaning: edam:data_2119 + title: Nucleic acid identifier + edam:data_2127: + text: edam:data_2127 + description: An identifier of a genetic code. + meaning: edam:data_2127 + title: Genetic code identifier + edam:data_2128: + text: edam:data_2128 + description: Informal name for a genetic code, typically an organism name. + meaning: edam:data_2128 + title: Genetic code name + edam:data_2129: + text: edam:data_2129 + description: Name of a file format such as HTML, PNG, PDF, EMBL, GenBank and + so on. + meaning: edam:data_2129 + title: File format name + edam:data_2131: + text: edam:data_2131 + description: Name of a computer operating system such as Linux, PC or Mac. + meaning: edam:data_2131 + title: Operating system name + edam:data_2133: + text: edam:data_2133 + description: A logical operator such as OR, AND, XOR, and NOT. + meaning: edam:data_2133 + title: Logical operator + edam:data_2137: + text: edam:data_2137 + description: A penalty for introducing or extending a gap in an alignment. + meaning: edam:data_2137 + title: Gap penalty + edam:data_2139: + text: edam:data_2139 + description: A temperature concerning nucleic acid denaturation, typically + the temperature at which the two strands of a hybridised or double stranded + nucleic acid (DNA or RNA/DNA) molecule separate. + meaning: edam:data_2139 + title: Nucleic acid melting temperature + edam:data_2140: + text: edam:data_2140 + description: The concentration of a chemical compound. + meaning: edam:data_2140 + title: Concentration + edam:data_2154: + text: edam:data_2154 + description: Any arbitrary name of a molecular sequence. + meaning: edam:data_2154 + title: Sequence name + edam:data_2160: + text: edam:data_2160 + description: A plot of Fickett testcode statistic (identifying protein coding + regions) in a nucleotide sequences. + meaning: edam:data_2160 + title: Fickett testcode plot + edam:data_2161: + text: edam:data_2161 + description: A plot of sequence similarities identified from word-matching + or character comparison. + meaning: edam:data_2161 + title: Sequence similarity plot + edam:data_2162: + text: edam:data_2162 + description: An image of peptide sequence sequence looking down the axis of + the helix for highlighting amphipathicity and other properties. + meaning: edam:data_2162 + title: Helical wheel + edam:data_2163: + text: edam:data_2163 + description: An image of peptide sequence sequence in a simple 3,4,3,4 repeating + pattern that emulates at a simple level the arrangement of residues around + an alpha helix. + meaning: edam:data_2163 + title: Helical net + edam:data_2165: + text: edam:data_2165 + description: A plot of pK versus pH for a protein. + meaning: edam:data_2165 + title: Protein ionisation curve + edam:data_2166: + text: edam:data_2166 + description: A plot of character or word composition / frequency of a molecular + sequence. + meaning: edam:data_2166 + title: Sequence composition plot + edam:data_2167: + text: edam:data_2167 + description: Density plot (of base composition) for a nucleotide sequence. + meaning: edam:data_2167 + title: Nucleic acid density plot + edam:data_2168: + text: edam:data_2168 + description: Image of a sequence trace (nucleotide sequence versus probabilities + of each of the 4 bases). + meaning: edam:data_2168 + title: Sequence trace image + edam:data_2174: + text: edam:data_2174 + description: Secondary identifier of an object from the FlyBase database. + meaning: edam:data_2174 + title: FlyBase secondary identifier + edam:data_2190: + text: edam:data_2190 + description: A fixed-size datum calculated (by using a hash function) for + a molecular sequence, typically for purposes of error detection or indexing. + meaning: edam:data_2190 + title: Sequence checksum + edam:data_2193: + text: edam:data_2193 + description: Basic information on any arbitrary database entry. + meaning: edam:data_2193 + title: Database entry metadata + edam:data_2208: + text: edam:data_2208 + description: An identifier of a plasmid in a database. + meaning: edam:data_2208 + title: Plasmid identifier + edam:data_2209: + text: edam:data_2209 + description: A unique identifier of a specific mutation catalogued in a database. + meaning: edam:data_2209 + title: Mutation ID + edam:data_2216: + text: edam:data_2216 + description: The number of a codon, for instance, at which a mutation is located. + meaning: edam:data_2216 + title: Codon number + edam:data_2219: + text: edam:data_2219 + description: The name of a field in a database. + meaning: edam:data_2219 + title: Database field name + edam:data_2220: + text: edam:data_2220 + description: Unique identifier of a sequence cluster from the SYSTERS database. + meaning: edam:data_2220 + title: Sequence cluster ID (SYSTERS) + edam:data_2223: + text: edam:data_2223 + description: Data concerning a biological ontology. + meaning: edam:data_2223 + title: Ontology metadata + edam:data_2253: + text: edam:data_2253 + description: The name of a data type. + meaning: edam:data_2253 + title: Data resource definition name + edam:data_2254: + text: edam:data_2254 + description: Name of an OBO file format such as OBO-XML, plain and so on. + meaning: edam:data_2254 + title: OBO file format name + edam:data_2285: + text: edam:data_2285 + description: Identifier for genetic elements in MIPS database. + meaning: edam:data_2285 + title: Gene ID (MIPS) + edam:data_2290: + text: edam:data_2290 + description: An accession number of an entry from the EMBL sequence database. + meaning: edam:data_2290 + title: EMBL accession + edam:data_2291: + text: edam:data_2291 + description: An identifier of a polypeptide in the UniProt database. + meaning: edam:data_2291 + title: UniProt ID + edam:data_2292: + text: edam:data_2292 + description: Accession number of an entry from the GenBank sequence database. + meaning: edam:data_2292 + title: GenBank accession + edam:data_2293: + text: edam:data_2293 + description: Secondary (internal) identifier of a Gramene database entry. + meaning: edam:data_2293 + title: Gramene secondary identifier + edam:data_2294: + text: edam:data_2294 + description: An identifier of an entry from a database of molecular sequence + variation. + meaning: edam:data_2294 + title: Sequence variation ID + edam:data_2295: + text: edam:data_2295 + description: A unique (and typically persistent) identifier of a gene in a + database, that is (typically) different to the gene name/symbol. + meaning: edam:data_2295 + title: Gene ID + edam:data_2297: + text: edam:data_2297 + description: Identifier of an E. coli K-12 gene from EcoGene Database. + meaning: edam:data_2297 + title: Gene ID (ECK) + edam:data_2298: + text: edam:data_2298 + description: Identifier for a gene approved by the HUGO Gene Nomenclature + Committee. + meaning: edam:data_2298 + title: Gene ID (HGNC) + edam:data_2299: + text: edam:data_2299 + description: The name of a gene, (typically) assigned by a person and/or according + to a naming scheme. It may contain white space characters and is typically + more intuitive and readable than a gene symbol. It (typically) may be used + to identify similar genes in different species and to derive a gene symbol. + meaning: edam:data_2299 + title: Gene name + edam:data_2301: + text: edam:data_2301 + description: A specification of a chemical structure in SMILES format. + meaning: edam:data_2301 + title: SMILES string + edam:data_2302: + text: edam:data_2302 + description: Unique identifier of an entry from the STRING database of protein-protein + interactions. + meaning: edam:data_2302 + title: STRING ID + edam:data_2309: + text: edam:data_2309 + description: Identifier of a biological reaction from the SABIO-RK reactions + database. + meaning: edam:data_2309 + title: Reaction ID (SABIO-RK) + edam:data_2313: + text: edam:data_2313 + description: A human-readable collection of information about one or more + specific carbohydrate 3D structure(s). + meaning: edam:data_2313 + title: Carbohydrate report + edam:data_2314: + text: edam:data_2314 + description: A series of digits that are assigned consecutively to each sequence + record processed by NCBI. The GI number bears no resemblance to the Accession + number of the sequence record. + meaning: edam:data_2314 + title: GI number + edam:data_2315: + text: edam:data_2315 + description: An identifier assigned to sequence records processed by NCBI, + made of the accession number of the database record followed by a dot and + a version number. + meaning: edam:data_2315 + title: NCBI version + edam:data_2316: + text: edam:data_2316 + description: The name of a cell line. + meaning: edam:data_2316 + title: Cell line name + edam:data_2317: + text: edam:data_2317 + description: The exact name of a cell line. + meaning: edam:data_2317 + title: Cell line name (exact) + edam:data_2318: + text: edam:data_2318 + description: The truncated name of a cell line. + meaning: edam:data_2318 + title: Cell line name (truncated) + edam:data_2319: + text: edam:data_2319 + description: The name of a cell line without any punctuation. + meaning: edam:data_2319 + title: Cell line name (no punctuation) + edam:data_2320: + text: edam:data_2320 + description: The assonant name of a cell line. + meaning: edam:data_2320 + title: Cell line name (assonant) + edam:data_2321: + text: edam:data_2321 + description: A unique, persistent identifier of an enzyme. + meaning: edam:data_2321 + title: Enzyme ID + edam:data_2325: + text: edam:data_2325 + description: Identifier of an enzyme from the REBASE enzymes database. + meaning: edam:data_2325 + title: REBASE enzyme number + edam:data_2326: + text: edam:data_2326 + description: Unique identifier of a drug from the DrugBank database. + meaning: edam:data_2326 + title: DrugBank ID + edam:data_2327: + text: edam:data_2327 + description: A unique identifier assigned to NCBI protein sequence records. + meaning: edam:data_2327 + title: GI number (protein) + edam:data_2335: + text: edam:data_2335 + description: A score derived from the alignment of two sequences, which is + then normalised with respect to the scoring system. + meaning: edam:data_2335 + title: Bit score + edam:data_2337: + text: edam:data_2337 + description: Data concerning or describing some core computational resource, + as distinct from primary data. This includes metadata on the origin, source, + history, ownership or location of some thing. + meaning: edam:data_2337 + title: Resource metadata + edam:data_2338: + text: edam:data_2338 + description: Any arbitrary identifier of an ontology. + meaning: edam:data_2338 + title: Ontology identifier + edam:data_2339: + text: edam:data_2339 + description: The name of a concept in an ontology. + meaning: edam:data_2339 + title: Ontology concept name + edam:data_2340: + text: edam:data_2340 + description: An identifier of a build of a particular genome. + meaning: edam:data_2340 + title: Genome build identifier + edam:data_2342: + text: edam:data_2342 + description: The name of a biological pathway or network. + meaning: edam:data_2342 + title: Pathway or network name + edam:data_2343: + text: edam:data_2343 + description: Identifier of a pathway from the KEGG pathway database. + meaning: edam:data_2343 + title: Pathway ID (KEGG) + edam:data_2344: + text: edam:data_2344 + description: Identifier of a pathway from the NCI-Nature pathway database. + meaning: edam:data_2344 + title: Pathway ID (NCI-Nature) + edam:data_2345: + text: edam:data_2345 + description: Identifier of a pathway from the ConsensusPathDB pathway database. + meaning: edam:data_2345 + title: Pathway ID (ConsensusPathDB) + edam:data_2346: + text: edam:data_2346 + description: Unique identifier of an entry from the UniRef database. + meaning: edam:data_2346 + title: Sequence cluster ID (UniRef) + edam:data_2347: + text: edam:data_2347 + description: Unique identifier of an entry from the UniRef100 database. + meaning: edam:data_2347 + title: Sequence cluster ID (UniRef100) + edam:data_2348: + text: edam:data_2348 + description: Unique identifier of an entry from the UniRef90 database. + meaning: edam:data_2348 + title: Sequence cluster ID (UniRef90) + edam:data_2349: + text: edam:data_2349 + description: Unique identifier of an entry from the UniRef50 database. + meaning: edam:data_2349 + title: Sequence cluster ID (UniRef50) + edam:data_2353: + text: edam:data_2353 + description: Data concerning or derived from an ontology. + meaning: edam:data_2353 + title: Ontology data + edam:data_2354: + text: edam:data_2354 + description: A human-readable collection of information about a specific RNA + family or other group of classified RNA sequences. + meaning: edam:data_2354 + title: RNA family report + edam:data_2355: + text: edam:data_2355 + description: Identifier of an RNA family, typically an entry from a RNA sequence + classification database. + meaning: edam:data_2355 + title: RNA family identifier + edam:data_2356: + text: edam:data_2356 + description: Stable accession number of an entry (RNA family) from the RFAM + database. + meaning: edam:data_2356 + title: RFAM accession + edam:data_2362: + text: edam:data_2362 + description: Accession number of a nucleotide or protein sequence database + entry. + meaning: edam:data_2362 + title: Sequence accession (hybrid) + edam:data_2365: + text: edam:data_2365 + description: A persistent, unique identifier of a biological pathway or network + (typically a database entry). + meaning: edam:data_2365 + title: Pathway or network accession + edam:data_2366: + text: edam:data_2366 + description: Alignment of the (1D representations of) secondary structure + of two or more molecules. + meaning: edam:data_2366 + title: Secondary structure alignment + edam:data_2367: + text: edam:data_2367 + description: Identifier of an object from the ASTD database. + meaning: edam:data_2367 + title: ASTD ID + edam:data_2368: + text: edam:data_2368 + description: Identifier of an exon from the ASTD database. + meaning: edam:data_2368 + title: ASTD ID (exon) + edam:data_2369: + text: edam:data_2369 + description: Identifier of an intron from the ASTD database. + meaning: edam:data_2369 + title: ASTD ID (intron) + edam:data_2370: + text: edam:data_2370 + description: Identifier of a polyA signal from the ASTD database. + meaning: edam:data_2370 + title: ASTD ID (polya) + edam:data_2371: + text: edam:data_2371 + description: Identifier of a transcription start site from the ASTD database. + meaning: edam:data_2371 + title: ASTD ID (tss) + edam:data_2373: + text: edam:data_2373 + description: Unique identifier of a spot from a two-dimensional (protein) + gel. + meaning: edam:data_2373 + title: Spot ID + edam:data_2374: + text: edam:data_2374 + description: Unique identifier of a spot from a two-dimensional (protein) + gel in the SWISS-2DPAGE database. + meaning: edam:data_2374 + title: Spot serial number + edam:data_2375: + text: edam:data_2375 + description: Unique identifier of a spot from a two-dimensional (protein) + gel from a HSC-2DPAGE database. + meaning: edam:data_2375 + title: Spot ID (HSC-2DPAGE) + edam:data_2379: + text: edam:data_2379 + description: Identifier of a strain of an organism variant, typically a plant, + virus or bacterium. + meaning: edam:data_2379 + title: Strain identifier + edam:data_2380: + text: edam:data_2380 + description: A unique identifier of an item from the CABRI database. + meaning: edam:data_2380 + title: CABRI accession + edam:data_2382: + text: edam:data_2382 + description: Identifier of an entry from a database of genotype experiment + metadata. + meaning: edam:data_2382 + title: Genotype experiment ID + edam:data_2383: + text: edam:data_2383 + description: Identifier of an entry from the EGA database. + meaning: edam:data_2383 + title: EGA accession + edam:data_2384: + text: edam:data_2384 + description: Identifier of a protein entry catalogued in the International + Protein Index (IPI) database. + meaning: edam:data_2384 + title: IPI protein ID + edam:data_2385: + text: edam:data_2385 + description: Accession number of a protein from the RefSeq database. + meaning: edam:data_2385 + title: RefSeq accession (protein) + edam:data_2386: + text: edam:data_2386 + description: Identifier of an entry (promoter) from the EPD database. + meaning: edam:data_2386 + title: EPD ID + edam:data_2387: + text: edam:data_2387 + description: Identifier of an entry from the TAIR database. + meaning: edam:data_2387 + title: TAIR accession + edam:data_2388: + text: edam:data_2388 + description: Identifier of an Arabidopsis thaliana gene from the TAIR database. + meaning: edam:data_2388 + title: TAIR accession (At gene) + edam:data_2389: + text: edam:data_2389 + description: Identifier of an entry from the UniSTS database. + meaning: edam:data_2389 + title: UniSTS accession + edam:data_2390: + text: edam:data_2390 + description: Identifier of an entry from the UNITE database. + meaning: edam:data_2390 + title: UNITE accession + edam:data_2391: + text: edam:data_2391 + description: Identifier of an entry from the UTR database. + meaning: edam:data_2391 + title: UTR accession + edam:data_2392: + text: edam:data_2392 + description: Accession number of a UniParc (protein sequence) database entry. + meaning: edam:data_2392 + title: UniParc accession + edam:data_2393: + text: edam:data_2393 + description: Identifier of an entry from the Rouge or HUGE databases. + meaning: edam:data_2393 + title: mFLJ/mKIAA number + edam:data_2398: + text: edam:data_2398 + description: Unique identifier for a protein from the Ensembl database. + meaning: edam:data_2398 + title: Ensembl protein ID + edam:data_2523: + text: edam:data_2523 + description: Data concerning phylogeny, typically of molecular sequences, + including reports of information concerning or derived from a phylogenetic + tree, or from comparing two or more phylogenetic trees. + meaning: edam:data_2523 + title: Phylogenetic data + edam:data_2526: + text: edam:data_2526 + description: Data concerning, extracted from, or derived from the analysis + of a scientific text (or texts) such as a full text article from a scientific + journal. + meaning: edam:data_2526 + title: Text data + edam:data_2530: + text: edam:data_2530 + description: A human-readable collection of information about a specific organism. + meaning: edam:data_2530 + title: Organism report + edam:data_2531: + text: edam:data_2531 + description: A human-readable collection of information about about how a + scientific experiment or analysis was carried out that results in a specific + set of data or results used for further analysis or to test a specific hypothesis. + meaning: edam:data_2531 + title: Protocol + edam:data_2534: + text: edam:data_2534 + description: An attribute of a molecular sequence, possibly in reference to + some other sequence. + meaning: edam:data_2534 + title: Sequence attribute + edam:data_2535: + text: edam:data_2535 + description: Output from a serial analysis of gene expression (SAGE), massively + parallel signature sequencing (MPSS) or sequencing by synthesis (SBS) experiment. + In all cases this is a list of short sequence tags and the number of times + it is observed. + meaning: edam:data_2535 + title: Sequence tag profile + edam:data_2536: + text: edam:data_2536 + description: Data concerning a mass spectrometry measurement. + meaning: edam:data_2536 + title: Mass spectrometry data + edam:data_2537: + text: edam:data_2537 + description: Raw data from experimental methods for determining protein structure. + meaning: edam:data_2537 + title: Protein structure raw data + edam:data_2538: + text: edam:data_2538 + description: An identifier of a mutation. + meaning: edam:data_2538 + title: Mutation identifier + edam:data_2563: + text: edam:data_2563 + description: Single letter amino acid identifier, e.g. G. + meaning: edam:data_2563 + title: Amino acid name (single letter) + edam:data_2564: + text: edam:data_2564 + description: Three letter amino acid identifier, e.g. GLY. + meaning: edam:data_2564 + title: Amino acid name (three letter) + edam:data_2565: + text: edam:data_2565 + description: Full name of an amino acid, e.g. Glycine. + meaning: edam:data_2565 + title: Amino acid name (full name) + edam:data_2576: + text: edam:data_2576 + description: Identifier of a toxin. + meaning: edam:data_2576 + title: Toxin identifier + edam:data_2578: + text: edam:data_2578 + description: Unique identifier of a toxin from the ArachnoServer database. + meaning: edam:data_2578 + title: ArachnoServer ID + edam:data_2580: + text: edam:data_2580 + description: Unique identifier of a monomer from the BindingDB database. + meaning: edam:data_2580 + title: BindingDB Monomer ID + edam:data_2582: + text: edam:data_2582 + description: An identifier of a 'biological process' concept from the the + Gene Ontology. + meaning: edam:data_2582 + title: GO concept ID (biological process) + edam:data_2583: + text: edam:data_2583 + description: An identifier of a 'molecular function' concept from the the + Gene Ontology. + meaning: edam:data_2583 + title: GO concept ID (molecular function) + edam:data_2586: + text: edam:data_2586 + description: An image arising from a Northern Blot experiment. + meaning: edam:data_2586 + title: Northern blot image + edam:data_2587: + text: edam:data_2587 + description: Unique identifier of a blot from a Northern Blot. + meaning: edam:data_2587 + title: Blot ID + edam:data_2588: + text: edam:data_2588 + description: Unique identifier of a blot from a Northern Blot from the BlotBase + database. + meaning: edam:data_2588 + title: BlotBase blot ID + edam:data_2589: + text: edam:data_2589 + description: Raw data on a biological hierarchy, describing the hierarchy + proper, hierarchy components and possibly associated annotation. + meaning: edam:data_2589 + title: Hierarchy + edam:data_2591: + text: edam:data_2591 + description: Identifier of an entry from the Brite database of biological + hierarchies. + meaning: edam:data_2591 + title: Brite hierarchy ID + edam:data_2593: + text: edam:data_2593 + description: A unique identifier for an organism used in the BRENDA database. + meaning: edam:data_2593 + title: BRENDA organism ID + edam:data_2594: + text: edam:data_2594 + description: The name of a taxon using the controlled vocabulary of the UniGene + database. + meaning: edam:data_2594 + title: UniGene taxon + edam:data_2595: + text: edam:data_2595 + description: The name of a taxon using the controlled vocabulary of the UTRdb + database. + meaning: edam:data_2595 + title: UTRdb taxon + edam:data_2596: + text: edam:data_2596 + description: An identifier of a catalogue of biological resources. + meaning: edam:data_2596 + title: Catalogue ID + edam:data_2597: + text: edam:data_2597 + description: The name of a catalogue of biological resources from the CABRI + database. + meaning: edam:data_2597 + title: CABRI catalogue name + edam:data_2600: + text: edam:data_2600 + description: Primary data about a specific biological pathway or network (the + nodes and connections within the pathway or network). + meaning: edam:data_2600 + title: Pathway or network + edam:data_2603: + text: edam:data_2603 + description: Image, hybridisation or some other data arising from a study + of feature/molecule expression, typically profiling or quantification. + meaning: edam:data_2603 + title: Expression data + edam:data_2605: + text: edam:data_2605 + description: Unique identifier of a chemical compound from the KEGG database. + meaning: edam:data_2605 + title: Compound ID (KEGG) + edam:data_2606: + text: edam:data_2606 + description: Name (not necessarily stable) an entry (RNA family) from the + RFAM database. + meaning: edam:data_2606 + title: RFAM name + edam:data_2608: + text: edam:data_2608 + description: Identifier of a biological reaction from the KEGG reactions database. + meaning: edam:data_2608 + title: Reaction ID (KEGG) + edam:data_2609: + text: edam:data_2609 + description: Unique identifier of a drug from the KEGG Drug database. + meaning: edam:data_2609 + title: Drug ID (KEGG) + edam:data_2610: + text: edam:data_2610 + description: Identifier of an entry (exon, gene, transcript or protein) from + the Ensembl database. + meaning: edam:data_2610 + title: Ensembl ID + edam:data_2611: + text: edam:data_2611 + description: An identifier of a disease from the International Classification + of Diseases (ICD) database. + meaning: edam:data_2611 + title: ICD identifier + edam:data_2612: + text: edam:data_2612 + description: Unique identifier of a sequence cluster from the CluSTr database. + meaning: edam:data_2612 + title: Sequence cluster ID (CluSTr) + edam:data_2613: + text: edam:data_2613 + description: Unique identifier of a glycan ligand from the KEGG GLYCAN database + (a subset of KEGG LIGAND). + meaning: edam:data_2613 + title: KEGG Glycan ID + edam:data_2614: + text: edam:data_2614 + description: A unique identifier of a family from the transport classification + database (TCDB) of membrane transport proteins. + meaning: edam:data_2614 + title: TCDB ID + edam:data_2615: + text: edam:data_2615 + description: Unique identifier of an entry from the MINT database of protein-protein + interactions. + meaning: edam:data_2615 + title: MINT ID + edam:data_2616: + text: edam:data_2616 + description: Unique identifier of an entry from the DIP database of protein-protein + interactions. + meaning: edam:data_2616 + title: DIP ID + edam:data_2617: + text: edam:data_2617 + description: Unique identifier of a protein listed in the UCSD-Nature Signaling + Gateway Molecule Pages database. + meaning: edam:data_2617 + title: Signaling Gateway protein ID + edam:data_2618: + text: edam:data_2618 + description: Identifier of a protein modification catalogued in a database. + meaning: edam:data_2618 + title: Protein modification ID + edam:data_2619: + text: edam:data_2619 + description: Identifier of a protein modification catalogued in the RESID + database. + meaning: edam:data_2619 + title: RESID ID + edam:data_2620: + text: edam:data_2620 + description: Identifier of an entry from the RGD database. + meaning: edam:data_2620 + title: RGD ID + edam:data_2621: + text: edam:data_2621 + description: Identifier of a protein sequence from the TAIR database. + meaning: edam:data_2621 + title: TAIR accession (protein) + edam:data_2622: + text: edam:data_2622 + description: Identifier of a small molecule metabolite from the Human Metabolome + Database (HMDB). + meaning: edam:data_2622 + title: Compound ID (HMDB) + edam:data_2625: + text: edam:data_2625 + description: Identifier of an entry from the LIPID MAPS database. + meaning: edam:data_2625 + title: LIPID MAPS ID + edam:data_2626: + text: edam:data_2626 + description: Identifier of a peptide from the PeptideAtlas peptide databases. + meaning: edam:data_2626 + title: PeptideAtlas ID + edam:data_2628: + text: edam:data_2628 + description: A unique identifier of an interaction from the BioGRID database. + meaning: edam:data_2628 + title: BioGRID interaction ID + edam:data_2629: + text: edam:data_2629 + description: Unique identifier of a peptidase enzyme from the MEROPS database. + meaning: edam:data_2629 + title: Enzyme ID (MEROPS) + edam:data_2630: + text: edam:data_2630 + description: An identifier of a mobile genetic element. + meaning: edam:data_2630 + title: Mobile genetic element ID + edam:data_2631: + text: edam:data_2631 + description: An identifier of a mobile genetic element from the Aclame database. + meaning: edam:data_2631 + title: ACLAME ID + edam:data_2632: + text: edam:data_2632 + description: Identifier of an entry from the Saccharomyces genome database + (SGD). + meaning: edam:data_2632 + title: SGD ID + edam:data_2633: + text: edam:data_2633 + description: Unique identifier of a book. + meaning: edam:data_2633 + title: Book ID + edam:data_2634: + text: edam:data_2634 + description: The International Standard Book Number (ISBN) is for identifying + printed books. + meaning: edam:data_2634 + title: ISBN + edam:data_2635: + text: edam:data_2635 + description: Identifier of a metabolite from the 3DMET database. + meaning: edam:data_2635 + title: Compound ID (3DMET) + edam:data_2636: + text: edam:data_2636 + description: A unique identifier of an interaction from the MatrixDB database. + meaning: edam:data_2636 + title: MatrixDB interaction ID + edam:data_2637: + text: edam:data_2637 + description: A unique identifier for pathways, reactions, complexes and small + molecules from the cPath (Pathway Commons) database. + meaning: edam:data_2637 + title: cPath ID + edam:data_2638: + text: edam:data_2638 + description: Identifier of an assay from the PubChem database. + meaning: edam:data_2638 + title: PubChem bioassay ID + edam:data_2639: + text: edam:data_2639 + description: Identifier of an entry from the PubChem database. + meaning: edam:data_2639 + title: PubChem ID + edam:data_2641: + text: edam:data_2641 + description: Identifier of an enzyme reaction mechanism from the MACie database. + meaning: edam:data_2641 + title: Reaction ID (MACie) + edam:data_2642: + text: edam:data_2642 + description: Identifier for a gene from the miRBase database. + meaning: edam:data_2642 + title: Gene ID (miRBase) + edam:data_2643: + text: edam:data_2643 + description: Identifier for a gene from the Zebrafish information network + genome (ZFIN) database. + meaning: edam:data_2643 + title: Gene ID (ZFIN) + edam:data_2644: + text: edam:data_2644 + description: Identifier of an enzyme-catalysed reaction from the Rhea database. + meaning: edam:data_2644 + title: Reaction ID (Rhea) + edam:data_2645: + text: edam:data_2645 + description: Identifier of a biological pathway from the Unipathway database. + meaning: edam:data_2645 + title: Pathway ID (Unipathway) + edam:data_2646: + text: edam:data_2646 + description: Identifier of a small molecular from the ChEMBL database. + meaning: edam:data_2646 + title: Compound ID (ChEMBL) + edam:data_2647: + text: edam:data_2647 + description: Unique identifier of an entry from the Ligand-gated ion channel + (LGICdb) database. + meaning: edam:data_2647 + title: LGICdb identifier + edam:data_2648: + text: edam:data_2648 + description: Identifier of a biological reaction (kinetics entry) from the + SABIO-RK reactions database. + meaning: edam:data_2648 + title: Reaction kinetics ID (SABIO-RK) + edam:data_2649: + text: edam:data_2649 + description: Identifier of an entry from the pharmacogenetics and pharmacogenomics + knowledge base (PharmGKB). + meaning: edam:data_2649 + title: PharmGKB ID + edam:data_2650: + text: edam:data_2650 + description: Identifier of a pathway from the pharmacogenetics and pharmacogenomics + knowledge base (PharmGKB). + meaning: edam:data_2650 + title: Pathway ID (PharmGKB) + edam:data_2651: + text: edam:data_2651 + description: Identifier of a disease from the pharmacogenetics and pharmacogenomics + knowledge base (PharmGKB). + meaning: edam:data_2651 + title: Disease ID (PharmGKB) + edam:data_2652: + text: edam:data_2652 + description: Identifier of a drug from the pharmacogenetics and pharmacogenomics + knowledge base (PharmGKB). + meaning: edam:data_2652 + title: Drug ID (PharmGKB) + edam:data_2653: + text: edam:data_2653 + description: Identifier of a drug from the Therapeutic Target Database (TTD). + meaning: edam:data_2653 + title: Drug ID (TTD) + edam:data_2654: + text: edam:data_2654 + description: Identifier of a target protein from the Therapeutic Target Database + (TTD). + meaning: edam:data_2654 + title: Target ID (TTD) + edam:data_2655: + text: edam:data_2655 + description: A unique identifier of a type or group of cells. + meaning: edam:data_2655 + title: Cell type identifier + edam:data_2656: + text: edam:data_2656 + description: A unique identifier of a neuron from the NeuronDB database. + meaning: edam:data_2656 + title: NeuronDB ID + edam:data_2657: + text: edam:data_2657 + description: A unique identifier of a neuron from the NeuroMorpho database. + meaning: edam:data_2657 + title: NeuroMorpho ID + edam:data_2658: + text: edam:data_2658 + description: Identifier of a chemical from the ChemIDplus database. + meaning: edam:data_2658 + title: Compound ID (ChemIDplus) + edam:data_2659: + text: edam:data_2659 + description: Identifier of a pathway from the Small Molecule Pathway Database + (SMPDB). + meaning: edam:data_2659 + title: Pathway ID (SMPDB) + edam:data_2660: + text: edam:data_2660 + description: Identifier of an entry from the BioNumbers database of key numbers + and associated data in molecular biology. + meaning: edam:data_2660 + title: BioNumbers ID + edam:data_2662: + text: edam:data_2662 + description: Unique identifier of a toxin from the Toxin and Toxin Target + Database (T3DB) database. + meaning: edam:data_2662 + title: T3DB ID + edam:data_2663: + text: edam:data_2663 + description: Identifier of a carbohydrate. + meaning: edam:data_2663 + title: Carbohydrate identifier + edam:data_2664: + text: edam:data_2664 + description: Identifier of an entry from the GlycomeDB database. + meaning: edam:data_2664 + title: GlycomeDB ID + edam:data_2665: + text: edam:data_2665 + description: Identifier of an entry from the LipidBank database. + meaning: edam:data_2665 + title: LipidBank ID + edam:data_2666: + text: edam:data_2666 + description: Identifier of a conserved domain from the Conserved Domain Database. + meaning: edam:data_2666 + title: CDD ID + edam:data_2667: + text: edam:data_2667 + description: An identifier of an entry from the MMDB database. + meaning: edam:data_2667 + title: MMDB ID + edam:data_2668: + text: edam:data_2668 + description: Unique identifier of an entry from the iRefIndex database of + protein-protein interactions. + meaning: edam:data_2668 + title: iRefIndex ID + edam:data_2669: + text: edam:data_2669 + description: Unique identifier of an entry from the ModelDB database. + meaning: edam:data_2669 + title: ModelDB ID + edam:data_2670: + text: edam:data_2670 + description: Identifier of a signaling pathway from the Database of Quantitative + Cellular Signaling (DQCS). + meaning: edam:data_2670 + title: Pathway ID (DQCS) + edam:data_2700: + text: edam:data_2700 + description: Identifier of a protein domain (or other node) from the CATH + database. + meaning: edam:data_2700 + title: CATH identifier + edam:data_2701: + text: edam:data_2701 + description: A code number identifying a family from the CATH database. + meaning: edam:data_2701 + title: CATH node ID (family) + edam:data_2702: + text: edam:data_2702 + description: Identifier of an enzyme from the CAZy enzymes database. + meaning: edam:data_2702 + title: Enzyme ID (CAZy) + edam:data_2704: + text: edam:data_2704 + description: A unique identifier assigned by the I.M.A.G.E. consortium to + a clone (cloned molecular sequence). + meaning: edam:data_2704 + title: Clone ID (IMAGE) + edam:data_2705: + text: edam:data_2705 + description: An identifier of a 'cellular component' concept from the Gene + Ontology. + meaning: edam:data_2705 + title: GO concept ID (cellular component) + edam:data_2706: + text: edam:data_2706 + description: Name of a chromosome as used in the BioCyc database. + meaning: edam:data_2706 + title: Chromosome name (BioCyc) + edam:data_2709: + text: edam:data_2709 + description: An identifier of a gene expression profile from the CleanEx database. + meaning: edam:data_2709 + title: CleanEx entry name + edam:data_2710: + text: edam:data_2710 + description: An identifier of (typically a list of) gene expression experiments + catalogued in the CleanEx database. + meaning: edam:data_2710 + title: CleanEx dataset code + edam:data_2711: + text: edam:data_2711 + description: A human-readable collection of information concerning a genome + as a whole. + meaning: edam:data_2711 + title: Genome report + edam:data_2713: + text: edam:data_2713 + description: Unique identifier for a protein complex from the CORUM database. + meaning: edam:data_2713 + title: Protein ID (CORUM) + edam:data_2714: + text: edam:data_2714 + description: Unique identifier of a position-specific scoring matrix from + the CDD database. + meaning: edam:data_2714 + title: CDD PSSM-ID + edam:data_2715: + text: edam:data_2715 + description: Unique identifier for a protein from the CuticleDB database. + meaning: edam:data_2715 + title: Protein ID (CuticleDB) + edam:data_2716: + text: edam:data_2716 + description: Identifier of a predicted transcription factor from the DBD database. + meaning: edam:data_2716 + title: DBD ID + edam:data_2717: + text: edam:data_2717 + description: General annotation on an oligonucleotide probe, or a set of probes. + meaning: edam:data_2717 + title: Oligonucleotide probe annotation + edam:data_2718: + text: edam:data_2718 + description: Identifier of an oligonucleotide from a database. + meaning: edam:data_2718 + title: Oligonucleotide ID + edam:data_2719: + text: edam:data_2719 + description: Identifier of an oligonucleotide probe from the dbProbe database. + meaning: edam:data_2719 + title: dbProbe ID + edam:data_2720: + text: edam:data_2720 + description: Physicochemical property data for one or more dinucleotides. + meaning: edam:data_2720 + title: Dinucleotide property + edam:data_2721: + text: edam:data_2721 + description: Identifier of an dinucleotide property from the DiProDB database. + meaning: edam:data_2721 + title: DiProDB ID + edam:data_2723: + text: edam:data_2723 + description: Unique identifier for a protein from the DisProt database. + meaning: edam:data_2723 + title: Protein ID (DisProt) + edam:data_2725: + text: edam:data_2725 + description: Unique identifier for a gene transcript from the Ensembl database. + meaning: edam:data_2725 + title: Ensembl transcript ID + edam:data_2727: + text: edam:data_2727 + description: An identifier of a promoter of a gene that is catalogued in a + database. + meaning: edam:data_2727 + title: Promoter ID + edam:data_2728: + text: edam:data_2728 + description: Identifier of an EST sequence. + meaning: edam:data_2728 + title: EST accession + edam:data_2729: + text: edam:data_2729 + description: Identifier of an EST sequence from the COGEME database. + meaning: edam:data_2729 + title: COGEME EST ID + edam:data_2730: + text: edam:data_2730 + description: Identifier of a unisequence from the COGEME database. + meaning: edam:data_2730 + title: COGEME unisequence ID + edam:data_2731: + text: edam:data_2731 + description: Accession number of an entry (protein family) from the GeneFarm + database. + meaning: edam:data_2731 + title: Protein family ID (GeneFarm) + edam:data_2732: + text: edam:data_2732 + description: The name of a family of organism. + meaning: edam:data_2732 + title: Family name + edam:data_2736: + text: edam:data_2736 + description: A feature identifier as used in the SwissRegulon database. + meaning: edam:data_2736 + title: Sequence feature ID (SwissRegulon) + edam:data_2737: + text: edam:data_2737 + description: A unique identifier of gene in the NMPDR database. + meaning: edam:data_2737 + title: FIG ID + edam:data_2738: + text: edam:data_2738 + description: A unique identifier of gene in the Xenbase database. + meaning: edam:data_2738 + title: Gene ID (Xenbase) + edam:data_2739: + text: edam:data_2739 + description: A unique identifier of gene in the Genolist database. + meaning: edam:data_2739 + title: Gene ID (Genolist) + edam:data_2741: + text: edam:data_2741 + description: Identifier of an entry (promoter) from the ABS database. + meaning: edam:data_2741 + title: ABS ID + edam:data_2742: + text: edam:data_2742 + description: Identifier of a transcription factor from the AraC-XylS database. + meaning: edam:data_2742 + title: AraC-XylS ID + edam:data_2744: + text: edam:data_2744 + description: Identifier of a locus from the PseudoCAP database. + meaning: edam:data_2744 + title: Locus ID (PseudoCAP) + edam:data_2745: + text: edam:data_2745 + description: Identifier of a locus from the UTR database. + meaning: edam:data_2745 + title: Locus ID (UTR) + edam:data_2746: + text: edam:data_2746 + description: Unique identifier of a monosaccharide from the MonosaccharideDB + database. + meaning: edam:data_2746 + title: MonosaccharideDB ID + edam:data_2749: + text: edam:data_2749 + description: An identifier of a particular genome. + meaning: edam:data_2749 + title: Genome identifier + edam:data_2752: + text: edam:data_2752 + description: Identifier of an entry from the GlycoMapsDB (Glycosciences.de) + database. + meaning: edam:data_2752 + title: GlycoMap ID + edam:data_2753: + text: edam:data_2753 + description: A conformational energy map of the glycosidic linkages in a carbohydrate + molecule. + meaning: edam:data_2753 + title: Carbohydrate conformational map + edam:data_2755: + text: edam:data_2755 + description: The name of a transcription factor. + meaning: edam:data_2755 + title: Transcription factor name + edam:data_2756: + text: edam:data_2756 + description: Identifier of a membrane transport proteins from the transport + classification database (TCDB). + meaning: edam:data_2756 + title: TCID + edam:data_2757: + text: edam:data_2757 + description: Name of a domain from the Pfam database. + meaning: edam:data_2757 + title: Pfam domain name + edam:data_2758: + text: edam:data_2758 + description: Accession number of a Pfam clan. + meaning: edam:data_2758 + title: Pfam clan ID + edam:data_2759: + text: edam:data_2759 + description: Identifier for a gene from the VectorBase database. + meaning: edam:data_2759 + title: Gene ID (VectorBase) + edam:data_2761: + text: edam:data_2761 + description: Identifier of an entry from the UTRSite database of regulatory + motifs in eukaryotic UTRs. + meaning: edam:data_2761 + title: UTRSite ID + edam:data_2762: + text: edam:data_2762 + description: An informative report about a specific or conserved pattern in + a molecular sequence, such as its context in genes or proteins, its role, + origin or method of construction, etc. + meaning: edam:data_2762 + title: Sequence signature report + edam:data_2764: + text: edam:data_2764 + description: Official name of a protein as used in the UniProt database. + meaning: edam:data_2764 + title: Protein name (UniProt) + edam:data_2766: + text: edam:data_2766 + description: Name of a protein family from the HAMAP database. + meaning: edam:data_2766 + title: HAMAP ID + edam:data_2769: + text: edam:data_2769 + description: Identifier of a RNA transcript. + meaning: edam:data_2769 + title: Transcript ID + edam:data_2770: + text: edam:data_2770 + description: Identifier of an RNA transcript from the H-InvDB database. + meaning: edam:data_2770 + title: HIT ID + edam:data_2771: + text: edam:data_2771 + description: A unique identifier of gene cluster in the H-InvDB database. + meaning: edam:data_2771 + title: HIX ID + edam:data_2772: + text: edam:data_2772 + description: Identifier of a antibody from the HPA database. + meaning: edam:data_2772 + title: HPA antibody id + edam:data_2773: + text: edam:data_2773 + description: Identifier of a human major histocompatibility complex (HLA) + or other protein from the IMGT/HLA database. + meaning: edam:data_2773 + title: IMGT/HLA ID + edam:data_2774: + text: edam:data_2774 + description: A unique identifier of gene assigned by the J. Craig Venter Institute + (JCVI). + meaning: edam:data_2774 + title: Gene ID (JCVI) + edam:data_2775: + text: edam:data_2775 + description: The name of a kinase protein. + meaning: edam:data_2775 + title: Kinase name + edam:data_2776: + text: edam:data_2776 + description: Identifier of a physical entity from the ConsensusPathDB database. + meaning: edam:data_2776 + title: ConsensusPathDB entity ID + edam:data_2777: + text: edam:data_2777 + description: Name of a physical entity from the ConsensusPathDB database. + meaning: edam:data_2777 + title: ConsensusPathDB entity name + edam:data_2778: + text: edam:data_2778 + description: The number of a strain of algae and protozoa from the CCAP database. + meaning: edam:data_2778 + title: CCAP strain number + edam:data_2779: + text: edam:data_2779 + description: An identifier of stock from a catalogue of biological resources. + meaning: edam:data_2779 + title: Stock number + edam:data_2780: + text: edam:data_2780 + description: A stock number from The Arabidopsis information resource (TAIR). + meaning: edam:data_2780 + title: Stock number (TAIR) + edam:data_2781: + text: edam:data_2781 + description: Identifier of an entry from the RNA editing database (REDIdb). + meaning: edam:data_2781 + title: REDIdb ID + edam:data_2782: + text: edam:data_2782 + description: Name of a domain from the SMART database. + meaning: edam:data_2782 + title: SMART domain name + edam:data_2783: + text: edam:data_2783 + description: Accession number of an entry (family) from the PANTHER database. + meaning: edam:data_2783 + title: Protein family ID (PANTHER) + edam:data_2784: + text: edam:data_2784 + description: A unique identifier for a virus from the RNAVirusDB database. + meaning: edam:data_2784 + title: RNAVirusDB ID + edam:data_2785: + text: edam:data_2785 + description: An accession of annotation on a (group of) viruses (catalogued + in a database). + meaning: edam:data_2785 + title: Virus identifier + edam:data_2786: + text: edam:data_2786 + description: An identifier of a genome project assigned by NCBI. + meaning: edam:data_2786 + title: NCBI Genome Project ID + edam:data_2787: + text: edam:data_2787 + description: A unique identifier of a whole genome assigned by the NCBI. + meaning: edam:data_2787 + title: NCBI genome accession + edam:data_2789: + text: edam:data_2789 + description: Unique identifier for a membrane protein from the TopDB database. + meaning: edam:data_2789 + title: Protein ID (TopDB) + edam:data_2790: + text: edam:data_2790 + description: Identifier of a two-dimensional (protein) gel. + meaning: edam:data_2790 + title: Gel ID + edam:data_2791: + text: edam:data_2791 + description: Name of a reference map gel from the SWISS-2DPAGE database. + meaning: edam:data_2791 + title: Reference map name (SWISS-2DPAGE) + edam:data_2792: + text: edam:data_2792 + description: Unique identifier for a peroxidase protein from the PeroxiBase + database. + meaning: edam:data_2792 + title: Protein ID (PeroxiBase) + edam:data_2793: + text: edam:data_2793 + description: Identifier of an entry from the SISYPHUS database of tertiary + structure alignments. + meaning: edam:data_2793 + title: SISYPHUS ID + edam:data_2794: + text: edam:data_2794 + description: Accession of an open reading frame (catalogued in a database). + meaning: edam:data_2794 + title: ORF ID + edam:data_2795: + text: edam:data_2795 + description: An identifier of an open reading frame. + meaning: edam:data_2795 + title: ORF identifier + edam:data_2796: + text: edam:data_2796 + description: Identifier of an entry from the GlycosciencesDB database. + meaning: edam:data_2796 + title: LINUCS ID + edam:data_2797: + text: edam:data_2797 + description: Unique identifier for a ligand-gated ion channel protein from + the LGICdb database. + meaning: edam:data_2797 + title: Protein ID (LGICdb) + edam:data_2798: + text: edam:data_2798 + description: Identifier of an EST sequence from the MaizeDB database. + meaning: edam:data_2798 + title: MaizeDB ID + edam:data_2799: + text: edam:data_2799 + description: A unique identifier of gene in the MfunGD database. + meaning: edam:data_2799 + title: Gene ID (MfunGD) + edam:data_2800: + text: edam:data_2800 + description: An identifier of a disease from the Orpha database. + meaning: edam:data_2800 + title: Orpha number + edam:data_2802: + text: edam:data_2802 + description: Unique identifier for a protein from the EcID database. + meaning: edam:data_2802 + title: Protein ID (EcID) + edam:data_2803: + text: edam:data_2803 + description: A unique identifier of a cDNA molecule catalogued in the RefSeq + database. + meaning: edam:data_2803 + title: Clone ID (RefSeq) + edam:data_2804: + text: edam:data_2804 + description: Unique identifier for a cone snail toxin protein from the ConoServer + database. + meaning: edam:data_2804 + title: Protein ID (ConoServer) + edam:data_2805: + text: edam:data_2805 + description: Identifier of a GeneSNP database entry. + meaning: edam:data_2805 + title: GeneSNP ID + edam:data_2812: + text: edam:data_2812 + description: Identifier of a lipid. + meaning: edam:data_2812 + title: Lipid identifier + edam:data_2835: + text: edam:data_2835 + description: Identifier for a gene from the VBASE2 database. + meaning: edam:data_2835 + title: Gene ID (VBASE2) + edam:data_2836: + text: edam:data_2836 + description: A unique identifier for a virus from the DPVweb database. + meaning: edam:data_2836 + title: DPVweb ID + edam:data_2837: + text: edam:data_2837 + description: Identifier of a pathway from the BioSystems pathway database. + meaning: edam:data_2837 + title: Pathway ID (BioSystems) + edam:data_2849: + text: edam:data_2849 + description: An abstract of a scientific article. + meaning: edam:data_2849 + title: Abstract + edam:data_2850: + text: edam:data_2850 + description: 3D coordinate and associated data for a lipid structure. + meaning: edam:data_2850 + title: Lipid structure + edam:data_2851: + text: edam:data_2851 + description: 3D coordinate and associated data for the (3D) structure of a + drug. + meaning: edam:data_2851 + title: Drug structure + edam:data_2852: + text: edam:data_2852 + description: 3D coordinate and associated data for the (3D) structure of a + toxin. + meaning: edam:data_2852 + title: Toxin structure + edam:data_2854: + text: edam:data_2854 + description: A simple matrix of numbers, where each value (or column of values) + is derived derived from analysis of the corresponding position in a sequence + alignment. + meaning: edam:data_2854 + title: Position-specific scoring matrix + edam:data_2855: + text: edam:data_2855 + description: A matrix of distances between molecular entities, where a value + (distance) is (typically) derived from comparison of two entities and reflects + their similarity. + meaning: edam:data_2855 + title: Distance matrix + edam:data_2856: + text: edam:data_2856 + description: Distances (values representing similarity) between a group of + molecular structures. + meaning: edam:data_2856 + title: Structural distance matrix + edam:data_2858: + text: edam:data_2858 + description: A concept from a biological ontology. + meaning: edam:data_2858 + title: Ontology concept + edam:data_2865: + text: edam:data_2865 + description: A numerical measure of differences in the frequency of occurrence + of synonymous codons in DNA sequences. + meaning: edam:data_2865 + title: Codon usage bias + edam:data_2870: + text: edam:data_2870 + description: A map showing distance between genetic markers estimated by radiation-induced + breaks in a chromosome. + meaning: edam:data_2870 + title: Radiation hybrid map + edam:data_2872: + text: edam:data_2872 + description: A simple list of data identifiers (such as database accessions), + possibly with additional basic information on the addressed data. + meaning: edam:data_2872 + title: ID list + edam:data_2873: + text: edam:data_2873 + description: Gene frequencies data that may be read during phylogenetic tree + calculation. + meaning: edam:data_2873 + title: Phylogenetic gene frequencies data + edam:data_2877: + text: edam:data_2877 + description: 3D coordinate and associated data for a multi-protein complex; + two or more polypeptides chains in a stable, functional association with + one another. + meaning: edam:data_2877 + title: Protein complex + edam:data_2878: + text: edam:data_2878 + description: 3D coordinate and associated data for a protein (3D) structural + motif; any group of contiguous or non-contiguous amino acid residues but + typically those forming a feature with a structural or functional role. + meaning: edam:data_2878 + title: Protein structural motif + edam:data_2879: + text: edam:data_2879 + description: A human-readable collection of information about one or more + specific lipid 3D structure(s). + meaning: edam:data_2879 + title: Lipid report + edam:data_2884: + text: edam:data_2884 + description: Biological data that has been plotted as a graph of some type, + or plotting instructions for rendering such a graph. + meaning: edam:data_2884 + title: Plot + edam:data_2886: + text: edam:data_2886 + description: A protein sequence and associated metadata. + meaning: edam:data_2886 + title: Protein sequence record + edam:data_2887: + text: edam:data_2887 + description: A nucleic acid sequence and associated metadata. + meaning: edam:data_2887 + title: Nucleic acid sequence record + edam:data_2891: + text: edam:data_2891 + description: Accession of a mathematical model, typically an entry from a + database. + meaning: edam:data_2891 + title: Biological model accession + edam:data_2892: + text: edam:data_2892 + description: The name of a type or group of cells. + meaning: edam:data_2892 + title: Cell type name + edam:data_2893: + text: edam:data_2893 + description: Accession of a type or group of cells (catalogued in a database). + meaning: edam:data_2893 + title: Cell type accession + edam:data_2894: + text: edam:data_2894 + description: Accession of an entry from a database of chemicals. + meaning: edam:data_2894 + title: Compound accession + edam:data_2895: + text: edam:data_2895 + description: Accession of a drug. + meaning: edam:data_2895 + title: Drug accession + edam:data_2896: + text: edam:data_2896 + description: Name of a toxin. + meaning: edam:data_2896 + title: Toxin name + edam:data_2897: + text: edam:data_2897 + description: Accession of a toxin (catalogued in a database). + meaning: edam:data_2897 + title: Toxin accession + edam:data_2898: + text: edam:data_2898 + description: Accession of a monosaccharide (catalogued in a database). + meaning: edam:data_2898 + title: Monosaccharide accession + edam:data_2899: + text: edam:data_2899 + description: Common name of a drug. + meaning: edam:data_2899 + title: Drug name + edam:data_2900: + text: edam:data_2900 + description: Accession of an entry from a database of carbohydrates. + meaning: edam:data_2900 + title: Carbohydrate accession + edam:data_2901: + text: edam:data_2901 + description: Molecule accession is any persistent, unique identifier of a + specific molecule (catalogued in a database). + meaning: edam:data_2901 + title: Molecule accession + edam:data_2902: + text: edam:data_2902 + description: Accession of a data definition (catalogued in a database). + meaning: edam:data_2902 + title: Data resource definition accession + edam:data_2903: + text: edam:data_2903 + description: An accession of a particular genome (in a database). + meaning: edam:data_2903 + title: Genome accession + edam:data_2904: + text: edam:data_2904 + description: An accession of a map of a molecular sequence (deposited in a + database). + meaning: edam:data_2904 + title: Map accession + edam:data_2905: + text: edam:data_2905 + description: Accession of an entry from a database of lipids. + meaning: edam:data_2905 + title: Lipid accession + edam:data_2906: + text: edam:data_2906 + description: Accession of a peptide deposited in a database. + meaning: edam:data_2906 + title: Peptide ID + edam:data_2907: + text: edam:data_2907 + description: Accession of a protein deposited in a database. + meaning: edam:data_2907 + title: Protein accession + edam:data_2908: + text: edam:data_2908 + description: An accession of annotation on a (group of) organisms (catalogued + in a database). + meaning: edam:data_2908 + title: Organism accession + edam:data_2909: + text: edam:data_2909 + description: The name of an organism (or group of organisms). + meaning: edam:data_2909 + title: Organism name + edam:data_2910: + text: edam:data_2910 + description: Accession of a protein family (that is deposited in a database). + meaning: edam:data_2910 + title: Protein family accession + edam:data_2911: + text: edam:data_2911 + description: Accession of an entry from a database of transcription factors + or binding sites. + meaning: edam:data_2911 + title: Transcription factor accession + edam:data_2912: + text: edam:data_2912 + description: Accession number of a strain of an organism variant, typically + a plant, virus or bacterium. + meaning: edam:data_2912 + title: Strain accession + edam:data_2914: + text: edam:data_2914 + description: Metadata on sequence features. + meaning: edam:data_2914 + title: Sequence features metadata + edam:data_2915: + text: edam:data_2915 + description: Identifier of a Gramene database entry. + meaning: edam:data_2915 + title: Gramene identifier + edam:data_2916: + text: edam:data_2916 + description: An identifier of an entry from the DDBJ sequence database. + meaning: edam:data_2916 + title: DDBJ accession + edam:data_2917: + text: edam:data_2917 + description: An identifier of an entity from the ConsensusPathDB database. + meaning: edam:data_2917 + title: ConsensusPathDB identifier + edam:data_2955: + text: edam:data_2955 + description: An informative report of information about molecular sequence(s), + including basic information (metadata), and reports generated from molecular + sequence analysis, including positional features and non-positional properties. + meaning: edam:data_2955 + title: Sequence report + edam:data_2956: + text: edam:data_2956 + description: Data concerning the properties or features of one or more protein + secondary structures. + meaning: edam:data_2956 + title: Protein secondary structure + edam:data_2957: + text: edam:data_2957 + description: A Hopp and Woods plot of predicted antigenicity of a peptide + or protein. + meaning: edam:data_2957 + title: Hopp and Woods plot + edam:data_2968: + text: edam:data_2968 + description: Data (typically biological or biomedical) that has been rendered + into an image, typically for display on screen. + meaning: edam:data_2968 + title: Image + edam:data_2969: + text: edam:data_2969 + description: Image of a molecular sequence, possibly with sequence features + or properties shown. + meaning: edam:data_2969 + title: Sequence image + edam:data_2970: + text: edam:data_2970 + description: A report on protein properties concerning hydropathy. + meaning: edam:data_2970 + title: Protein hydropathy data + edam:data_2976: + text: edam:data_2976 + description: One or more protein sequences, possibly with associated annotation. + meaning: edam:data_2976 + title: Protein sequence + edam:data_2977: + text: edam:data_2977 + description: One or more nucleic acid sequences, possibly with associated + annotation. + meaning: edam:data_2977 + title: Nucleic acid sequence + edam:data_2978: + text: edam:data_2978 + description: Data concerning a biochemical reaction, typically data and more + general annotation on the kinetics of enzyme-catalysed reaction. + meaning: edam:data_2978 + title: Reaction data + edam:data_2979: + text: edam:data_2979 + description: Data concerning small peptides. + meaning: edam:data_2979 + title: Peptide property + edam:data_2984: + text: edam:data_2984 + description: An informative report concerning or derived from the analysis + of a biological pathway or network, such as a map (diagram) or annotation. + meaning: edam:data_2984 + title: Pathway or network report + edam:data_2985: + text: edam:data_2985 + description: A thermodynamic or kinetic property of a nucleic acid molecule. + meaning: edam:data_2985 + title: Nucleic acid thermodynamic data + edam:data_2991: + text: edam:data_2991 + description: Geometry data for a protein structure, for example bond lengths, + bond angles, torsion angles, chiralities, planaraties etc. + meaning: edam:data_2991 + title: Protein geometry data + edam:data_2992: + text: edam:data_2992 + description: An image of protein structure. + meaning: edam:data_2992 + title: Protein structure image + edam:data_2994: + text: edam:data_2994 + description: Weights for sequence positions or characters in phylogenetic + analysis where zero is defined as unweighted. + meaning: edam:data_2994 + title: Phylogenetic character weights + edam:data_3002: + text: edam:data_3002 + description: Annotation of one particular positional feature on a biomolecular + (typically genome) sequence, suitable for import and display in a genome + browser. + meaning: edam:data_3002 + title: Annotation track + edam:data_3021: + text: edam:data_3021 + description: Accession number of a UniProt (protein sequence) database entry. + meaning: edam:data_3021 + title: UniProt accession + edam:data_3022: + text: edam:data_3022 + description: Identifier of a genetic code in the NCBI list of genetic codes. + meaning: edam:data_3022 + title: NCBI genetic code ID + edam:data_3025: + text: edam:data_3025 + description: Identifier of a concept in an ontology of biological or bioinformatics + concepts and relations. + meaning: edam:data_3025 + title: Ontology concept identifier + edam:data_3028: + text: edam:data_3028 + description: Data concerning the classification, identification and naming + of organisms. + meaning: edam:data_3028 + title: Taxonomy + edam:data_3029: + text: edam:data_3029 + description: EMBL/GENBANK/DDBJ coding feature protein identifier, issued by + International collaborators. + meaning: edam:data_3029 + title: Protein ID (EMBL/GenBank/DDBJ) + edam:data_3034: + text: edam:data_3034 + description: Name or other identifier of molecular sequence feature(s). + meaning: edam:data_3034 + title: Sequence feature identifier + edam:data_3035: + text: edam:data_3035 + description: An identifier of a molecular tertiary structure, typically an + entry from a structure database. + meaning: edam:data_3035 + title: Structure identifier + edam:data_3036: + text: edam:data_3036 + description: An identifier of an array of numerical values, such as a comparison + matrix. + meaning: edam:data_3036 + title: Matrix identifier + edam:data_3103: + text: edam:data_3103 + description: Unique identifier of a drug conforming to the Anatomical Therapeutic + Chemical (ATC) Classification System, a drug classification system controlled + by the WHO Collaborating Centre for Drug Statistics Methodology (WHOCC). + meaning: edam:data_3103 + title: ATC code + edam:data_3104: + text: edam:data_3104 + description: A unique, unambiguous, alphanumeric identifier of a chemical + substance as catalogued by the Substance Registration System of the Food + and Drug Administration (FDA). + meaning: edam:data_3104 + title: UNII + edam:data_3106: + text: edam:data_3106 + description: Metadata concerning the software, hardware or other aspects of + a computer system. + meaning: edam:data_3106 + title: System metadata + edam:data_3108: + text: edam:data_3108 + description: Raw data such as measurements or other results from laboratory + experiments, as generated from laboratory hardware. + meaning: edam:data_3108 + title: Experimental measurement + edam:data_3110: + text: edam:data_3110 + description: Raw data (typically MIAME-compliant) for hybridisations from + a microarray experiment. + meaning: edam:data_3110 + title: Raw microarray data + edam:data_3111: + text: edam:data_3111 + description: Data generated from processing and analysis of probe set data + from a microarray experiment. + meaning: edam:data_3111 + title: Processed microarray data + edam:data_3112: + text: edam:data_3112 + description: The final processed (normalised) data for a set of hybridisations + in a microarray experiment. + meaning: edam:data_3112 + title: Gene expression matrix + edam:data_3113: + text: edam:data_3113 + description: Annotation on a biological sample, for example experimental factors + and their values. + meaning: edam:data_3113 + title: Sample annotation + edam:data_3115: + text: edam:data_3115 + description: Annotation on the array itself used in a microarray experiment. + meaning: edam:data_3115 + title: Microarray metadata + edam:data_3117: + text: edam:data_3117 + description: Data concerning the hybridisations measured during a microarray + experiment. + meaning: edam:data_3117 + title: Microarray hybridisation data + edam:data_3128: + text: edam:data_3128 + description: A human-readable collection of information about regions within + a nucleic acid sequence which form secondary or tertiary (3D) structures. + meaning: edam:data_3128 + title: Nucleic acid structure report + edam:data_3134: + text: edam:data_3134 + description: An informative report on features of a messenger RNA (mRNA) molecules + including precursor RNA, primary (unprocessed) transcript and fully processed + molecules. This includes reports on a specific gene transcript, clone or + EST. + meaning: edam:data_3134 + title: Gene transcript report + edam:data_3148: + text: edam:data_3148 + description: A human-readable collection of information about a particular + family of genes, typically a set of genes with similar sequence that originate + from duplication of a common ancestor gene, or any other classification + of nucleic acid sequences or structures that reflects gene structure. + meaning: edam:data_3148 + title: Gene family report + edam:data_3153: + text: edam:data_3153 + description: An image of a protein. + meaning: edam:data_3153 + title: Protein image + edam:data_3181: + text: edam:data_3181 + description: An informative report about a DNA sequence assembly. + meaning: edam:data_3181 + title: Sequence assembly report + edam:data_3210: + text: edam:data_3210 + description: An index of a genome sequence. + meaning: edam:data_3210 + title: Genome index + edam:data_3236: + text: edam:data_3236 + description: The position of a cytogenetic band in a genome. + meaning: edam:data_3236 + title: Cytoband position + edam:data_3238: + text: edam:data_3238 + description: Cell type ontology concept ID. + meaning: edam:data_3238 + title: Cell type ontology ID + edam:data_3241: + text: edam:data_3241 + description: Mathematical model of a network, that contains biochemical kinetics. + meaning: edam:data_3241 + title: Kinetic model + edam:data_3264: + text: edam:data_3264 + description: Identifier of a COSMIC database entry. + meaning: edam:data_3264 + title: COSMIC ID + edam:data_3265: + text: edam:data_3265 + description: Identifier of a HGMD database entry. + meaning: edam:data_3265 + title: HGMD ID + edam:data_3266: + text: edam:data_3266 + description: Unique identifier of sequence assembly. + meaning: edam:data_3266 + title: Sequence assembly ID + edam:data_3270: + text: edam:data_3270 + description: Unique identifier for a gene tree from the Ensembl database. + meaning: edam:data_3270 + title: Ensembl gene tree ID + edam:data_3271: + text: edam:data_3271 + description: A phylogenetic tree that is an estimate of the character's phylogeny. + meaning: edam:data_3271 + title: Gene tree + edam:data_3272: + text: edam:data_3272 + description: A phylogenetic tree that reflects phylogeny of the taxa from + which the characters (used in calculating the tree) were sampled. + meaning: edam:data_3272 + title: Species tree + edam:data_3273: + text: edam:data_3273 + description: Name or other identifier of an entry from a biosample database. + meaning: edam:data_3273 + title: Sample ID + edam:data_3274: + text: edam:data_3274 + description: Identifier of an object from the MGI database. + meaning: edam:data_3274 + title: MGI accession + edam:data_3275: + text: edam:data_3275 + description: Name of a phenotype. + meaning: edam:data_3275 + title: Phenotype name + edam:data_3354: + text: edam:data_3354 + description: A HMM transition matrix contains the probabilities of switching + from one HMM state to another. + meaning: edam:data_3354 + title: Transition matrix + edam:data_3355: + text: edam:data_3355 + description: A HMM emission matrix holds the probabilities of choosing the + four nucleotides (A, C, G and T) in each of the states of a HMM. + meaning: edam:data_3355 + title: Emission matrix + edam:data_3358: + text: edam:data_3358 + description: An identifier of a data format. + meaning: edam:data_3358 + title: Format identifier + edam:data_3424: + text: edam:data_3424 + description: Raw biological or biomedical image generated by some experimental + technique. + meaning: edam:data_3424 + title: Raw image + edam:data_3425: + text: edam:data_3425 + description: Data concerning the intrinsic physical (e.g. structural) or chemical + properties of one, more or all carbohydrates. + meaning: edam:data_3425 + title: Carbohydrate property + edam:data_3442: + text: edam:data_3442 + description: An imaging technique that uses magnetic fields and radiowaves + to form images, typically to investigate the anatomy and physiology of the + human body. + meaning: edam:data_3442 + title: MRI image + edam:data_3449: + text: edam:data_3449 + description: An image from a cell migration track assay. + meaning: edam:data_3449 + title: Cell migration track image + edam:data_3451: + text: edam:data_3451 + description: Rate of association of a protein with another protein or some + other molecule. + meaning: edam:data_3451 + title: Rate of association + edam:data_3479: + text: edam:data_3479 + description: Multiple gene identifiers in a specific order. + meaning: edam:data_3479 + title: Gene order + edam:data_3483: + text: edam:data_3483 + description: The spectrum of frequencies of electromagnetic radiation emitted + from a molecule as a result of some spectroscopy experiment. + meaning: edam:data_3483 + title: Spectrum + edam:data_3488: + text: edam:data_3488 + description: Spectral information for a molecule from a nuclear magnetic resonance + experiment. + meaning: edam:data_3488 + title: NMR spectrum + edam:data_3492: + text: edam:data_3492 + description: An informative report about a specific or conserved nucleic acid + sequence pattern. + meaning: edam:data_3492 + title: Nucleic acid signature + edam:data_3494: + text: edam:data_3494 + description: A DNA sequence. + meaning: edam:data_3494 + title: DNA sequence + edam:data_3495: + text: edam:data_3495 + description: An RNA sequence. + meaning: edam:data_3495 + title: RNA sequence + edam:data_3498: + text: edam:data_3498 + description: Data on gene sequence variations resulting large-scale genotyping + and DNA sequencing projects. + meaning: edam:data_3498 + title: Sequence variations + edam:data_3505: + text: edam:data_3505 + description: A list of publications such as scientic papers or books. + meaning: edam:data_3505 + title: Bibliography + edam:data_3509: + text: edam:data_3509 + description: A mapping of supplied textual terms or phrases to ontology concepts + (URIs). + meaning: edam:data_3509 + title: Ontology mapping + edam:data_3546: + text: edam:data_3546 + description: Any data concerning a specific biological or biomedical image. + meaning: edam:data_3546 + title: Image metadata + edam:data_3558: + text: edam:data_3558 + description: A human-readable collection of information concerning a clinical + trial. + meaning: edam:data_3558 + title: Clinical trial report + edam:data_3567: + text: edam:data_3567 + description: A report about a biosample. + meaning: edam:data_3567 + title: Reference sample report + edam:data_3568: + text: edam:data_3568 + description: Accession number of an entry from the Gene Expression Atlas. + meaning: edam:data_3568 + title: Gene Expression Atlas Experiment ID + edam:data_3667: + text: edam:data_3667 + description: Identifier of an entry from a database of disease. + meaning: edam:data_3667 + title: Disease identifier + edam:data_3668: + text: edam:data_3668 + description: The name of some disease. + meaning: edam:data_3668 + title: Disease name + edam:data_3669: + text: edam:data_3669 + description: Learning material is a document or another digital object that + is designed for learning (educational, training) purposes. + meaning: edam:data_3669 + title: Learning material + edam:data_3670: + text: edam:data_3670 + description: A training course available for use on the Web. + meaning: edam:data_3670 + title: Online course + edam:data_3671: + text: edam:data_3671 + description: Any free or plain text, typically for human consumption and in + English. Can instantiate also as a textual search query. + meaning: edam:data_3671 + title: Text + edam:data_3707: + text: edam:data_3707 + description: Machine-readable biodiversity data. + meaning: edam:data_3707 + title: Biodiversity data + edam:data_3716: + text: edam:data_3716 + description: A human-readable collection of information concerning biosafety + data. + meaning: edam:data_3716 + title: Biosafety report + edam:data_3717: + text: edam:data_3717 + description: A report about any kind of isolation of biological material. + meaning: edam:data_3717 + title: Isolation report + edam:data_3718: + text: edam:data_3718 + description: Information about the ability of an organism to cause disease + in a corresponding host. + meaning: edam:data_3718 + title: Pathogenicity report + edam:data_3719: + text: edam:data_3719 + description: Information about the biosafety classification of an organism + according to corresponding law. + meaning: edam:data_3719 + title: Biosafety classification + edam:data_3720: + text: edam:data_3720 + description: A report about localisation of the isolaton of biological material + e.g. country or coordinates. + meaning: edam:data_3720 + title: Geographic location + edam:data_3721: + text: edam:data_3721 + description: A report about any kind of isolation source of biological material + e.g. blood, water, soil. + meaning: edam:data_3721 + title: Isolation source + edam:data_3722: + text: edam:data_3722 + description: Experimentally determined parameter of the physiology of an organism, + e.g. substrate spectrum. + meaning: edam:data_3722 + title: Physiology parameter + edam:data_3723: + text: edam:data_3723 + description: Experimentally determined parameter of the morphology of an organism, + e.g. size & shape. + meaning: edam:data_3723 + title: Morphology parameter + edam:data_3724: + text: edam:data_3724 + description: Experimental determined parameter for the cultivation of an organism. + meaning: edam:data_3724 + title: Cultivation parameter + edam:data_3732: + text: edam:data_3732 + description: Data concerning a sequencing experiment, that may be specified + as an input to some tool. + meaning: edam:data_3732 + title: Sequencing metadata name + edam:data_3733: + text: edam:data_3733 + description: An identifier of a flow cell of a sequencing machine. + meaning: edam:data_3733 + title: Flow cell identifier + edam:data_3734: + text: edam:data_3734 + description: An identifier of a lane within a flow cell of a sequencing machine, + within which millions of sequences are immobilised, amplified and sequenced. + meaning: edam:data_3734 + title: Lane identifier + edam:data_3735: + text: edam:data_3735 + description: A number corresponding to the number of an analysis performed + by a sequencing machine. For example, if it's the 13th analysis, the run + is 13. + meaning: edam:data_3735 + title: Run number + edam:data_3736: + text: edam:data_3736 + description: Data concerning ecology; for example measurements and reports + from the study of interactions among organisms and their environment. + meaning: edam:data_3736 + title: Ecological data + edam:data_3737: + text: edam:data_3737 + description: The mean species diversity in sites or habitats at a local scale. + meaning: edam:data_3737 + title: Alpha diversity data + edam:data_3738: + text: edam:data_3738 + description: The ratio between regional and local species diversity. + meaning: edam:data_3738 + title: Beta diversity data + edam:data_3739: + text: edam:data_3739 + description: The total species diversity in a landscape. + meaning: edam:data_3739 + title: Gamma diversity data + edam:data_3743: + text: edam:data_3743 + description: A plot in which community data (e.g. species abundance data) + is summarised. Similar species and samples are plotted close together, and + dissimilar species and samples are plotted placed far apart. + meaning: edam:data_3743 + title: Ordination plot + edam:data_3753: + text: edam:data_3753 + description: A ranked list of categories (usually ontology concepts), each + associated with a statistical metric of over-/under-representation within + the studied data. + meaning: edam:data_3753 + title: Over-representation data + edam:data_3754: + text: edam:data_3754 + description: A ranked list of Gene Ontology concepts, each associated with + a p-value, concerning or derived from the analysis of e.g. a set of genes + or proteins. + meaning: edam:data_3754 + title: GO-term enrichment data + edam:data_3756: + text: edam:data_3756 + description: Score for localization of one or more post-translational modifications + in peptide sequence measured by mass spectrometry. + meaning: edam:data_3756 + title: Localisation score + edam:data_3757: + text: edam:data_3757 + description: Identifier of a protein modification catalogued in the Unimod + database. + meaning: edam:data_3757 + title: Unimod ID + edam:data_3759: + text: edam:data_3759 + description: Identifier for mass spectrometry proteomics data in the proteomexchange.org + repository. + meaning: edam:data_3759 + title: ProteomeXchange ID + edam:data_3768: + text: edam:data_3768 + description: Groupings of expression profiles according to a clustering algorithm. + meaning: edam:data_3768 + title: Clustered expression profiles + edam:data_3769: + text: edam:data_3769 + description: An identifier of a concept from the BRENDA ontology. + meaning: edam:data_3769 + title: BRENDA ontology concept ID + edam:data_3779: + text: edam:data_3779 + description: A text (such as a scientific article), annotated with notes, + data and metadata, such as recognised entities, concepts, and their relations. + meaning: edam:data_3779 + title: Annotated text + edam:data_3786: + text: edam:data_3786 + description: A structured query, in form of a script, that defines a database + search task. + meaning: edam:data_3786 + title: Query script + edam:data_3805: + text: edam:data_3805 + description: Structural 3D model (volume map) from electron microscopy. + meaning: edam:data_3805 + title: 3D EM Map + edam:data_3806: + text: edam:data_3806 + description: Annotation on a structural 3D EM Map from electron microscopy. + This might include one or several locations in the map of the known features + of a particular macromolecule. + meaning: edam:data_3806 + title: 3D EM Mask + edam:data_3807: + text: edam:data_3807 + description: Raw DDD movie acquisition from electron microscopy. + meaning: edam:data_3807 + title: EM Movie + edam:data_3808: + text: edam:data_3808 + description: Raw acquisition from electron microscopy or average of an aligned + DDD movie. + meaning: edam:data_3808 + title: EM Micrograph + edam:data_3842: + text: edam:data_3842 + description: Data coming from molecular simulations, computer "experiments" + on model molecules. + meaning: edam:data_3842 + title: Molecular simulation data + edam:data_3856: + text: edam:data_3856 + description: Identifier of an entry from the RNA central database of annotated + human miRNAs. + meaning: edam:data_3856 + title: RNA central ID + edam:data_3861: + text: edam:data_3861 + description: A human-readable systematic collection of patient (or population) + health information in a digital format. + meaning: edam:data_3861 + title: Electronic health record + edam:data_3869: + text: edam:data_3869 + description: 'Data coming from molecular simulations, computer "experiments" + on model molecules. Typically formed by two separated but indivisible pieces + of information: topology data (static) and trajectory data (dynamic).' + meaning: edam:data_3869 + title: Simulation + edam:data_3870: + text: edam:data_3870 + description: 'Dynamic information of a structure molecular system coming from + a molecular simulation: XYZ 3D coordinates (sometimes with their associated + velocities) for every atom along time.' + meaning: edam:data_3870 + title: Trajectory data + edam:data_3871: + text: edam:data_3871 + description: 'Force field parameters: charges, masses, radii, bond lengths, + bond dihedrals, etc. define the structural molecular system, and are essential + for the proper description and simulation of a molecular system.' + meaning: edam:data_3871 + title: Forcefield parameters + edam:data_3872: + text: edam:data_3872 + description: 'Static information of a structure molecular system that is needed + for a molecular simulation: the list of atoms, their non-bonded parameters + for Van der Waals and electrostatic interactions, and the complete connectivity + in terms of bonds, angles and dihedrals.' + meaning: edam:data_3872 + title: Topology data + edam:data_3905: + text: edam:data_3905 + description: Visualization of distribution of quantitative data, e.g. expression + data, by histograms, violin plots and density plots. + meaning: edam:data_3905 + title: Histogram + edam:data_3914: + text: edam:data_3914 + description: Report of the quality control review that was made of factors + involved in a procedure. + meaning: edam:data_3914 + title: Quality control report + edam:data_3917: + text: edam:data_3917 + description: A table of unnormalized values representing summarised read counts + per genomic region (e.g. gene, transcript, peak). + meaning: edam:data_3917 + title: Count matrix + edam:data_3924: + text: edam:data_3924 + description: Alignment (superimposition) of DNA tertiary (3D) structures. + meaning: edam:data_3924 + title: DNA structure alignment + edam:data_3932: + text: edam:data_3932 + description: 'A score derived from the P-value to ensure correction for multiple + tests. The Q-value provides an estimate of the positive False Discovery + Rate (pFDR), i.e. the rate of false positives among all the cases reported + positive: pFDR = FP / (FP + TP).' + meaning: edam:data_3932 + title: Q-value + edam:data_3949: + text: edam:data_3949 + description: A profile HMM is a variant of a Hidden Markov model that is derived + specifically from a set of (aligned) biological sequences. Profile HMMs + provide the basis for a position-specific scoring system, which can be used + to align sequences and search databases for related sequences. + meaning: edam:data_3949 + title: Profile HMM + edam:data_3952: + text: edam:data_3952 + description: Identifier of a pathway from the WikiPathways pathway database. + meaning: edam:data_3952 + title: Pathway ID (WikiPathways) + edam:data_3953: + text: edam:data_3953 + description: A ranked list of pathways, each associated with z-score, p-value + or similar, concerning or derived from the analysis of e.g. a set of genes + or proteins. + meaning: edam:data_3953 + title: Pathway overrepresentation data + edam:data_4022: + text: edam:data_4022 + description: Identifier of a researcher registered with the ORCID database. + Used to identify author IDs. + meaning: edam:data_4022 + title: ORCID Identifier + edam:data_4040: + text: edam:data_4040 + description: Data management plan is a document describing the data management + of a project or an organisation, including acquisition, reuse, structure, + processing, storage, documentation, sharing, and preservation of data. This + may include budgeting for these operations. + meaning: edam:data_4040 + title: Data management plan + edam:data_4075: + text: edam:data_4075 + description: RefMet ID is the unique, persistent identifier used by the RefMet + database (A Reference list of Metabolite names), a standardised reference + nomenclature for metabolites. + meaning: edam:data_4075 + title: RefMet ID + reachable_from: + source_ontology: bioregistry:edam + source_nodes: + - edam:data_0006 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: false + EnumEDAMFormats: + name: EnumEDAMFormats + description: Data formats from the EDAM ontology. + from_schema: https://includedcc.org/common-access-model/EnumEDAMFormats + permissible_values: + edam:format_1196: + text: edam:format_1196 + description: Chemical structure specified in Simplified Molecular Input Line + Entry System (SMILES) line notation. + meaning: edam:format_1196 + title: SMILES + edam:format_1197: + text: edam:format_1197 + description: Chemical structure specified in IUPAC International Chemical + Identifier (InChI) line notation. + meaning: edam:format_1197 + title: InChI + edam:format_1198: + text: edam:format_1198 + description: Chemical structure specified by Molecular Formula (MF), including + a count of each element in a compound. + meaning: edam:format_1198 + title: mf + edam:format_1199: + text: edam:format_1199 + description: The InChIKey (hashed InChI) is a fixed length (25 character) + condensed digital representation of an InChI chemical structure specification. + It uniquely identifies a chemical compound. + meaning: edam:format_1199 + title: InChIKey + edam:format_1200: + text: edam:format_1200 + description: SMILES ARbitrary Target Specification (SMARTS) format for chemical + structure specification, which is a subset of the SMILES line notation. + meaning: edam:format_1200 + title: smarts + edam:format_1206: + text: edam:format_1206 + description: Alphabet for a molecular sequence with possible unknown positions + but without ambiguity or non-sequence characters. + meaning: edam:format_1206 + title: unambiguous pure + edam:format_1207: + text: edam:format_1207 + description: Alphabet for a nucleotide sequence with possible ambiguity, unknown + positions and non-sequence characters. + meaning: edam:format_1207 + title: nucleotide + edam:format_1208: + text: edam:format_1208 + description: Alphabet for a protein sequence with possible ambiguity, unknown + positions and non-sequence characters. + meaning: edam:format_1208 + title: protein + edam:format_1209: + text: edam:format_1209 + description: Alphabet for the consensus of two or more molecular sequences. + meaning: edam:format_1209 + title: consensus + edam:format_1210: + text: edam:format_1210 + description: Alphabet for a nucleotide sequence with possible ambiguity and + unknown positions but without non-sequence characters. + meaning: edam:format_1210 + title: pure nucleotide + edam:format_1211: + text: edam:format_1211 + description: Alphabet for a nucleotide sequence (characters ACGTU only) with + possible unknown positions but without ambiguity or non-sequence characters + . + meaning: edam:format_1211 + title: unambiguous pure nucleotide + edam:format_1212: + text: edam:format_1212 + description: Alphabet for a DNA sequence with possible ambiguity, unknown + positions and non-sequence characters. + meaning: edam:format_1212 + title: dna + edam:format_1213: + text: edam:format_1213 + description: Alphabet for an RNA sequence with possible ambiguity, unknown + positions and non-sequence characters. + meaning: edam:format_1213 + title: rna + edam:format_1214: + text: edam:format_1214 + description: Alphabet for a DNA sequence (characters ACGT only) with possible + unknown positions but without ambiguity or non-sequence characters. + meaning: edam:format_1214 + title: unambiguous pure dna + edam:format_1215: + text: edam:format_1215 + description: Alphabet for a DNA sequence with possible ambiguity and unknown + positions but without non-sequence characters. + meaning: edam:format_1215 + title: pure dna + edam:format_1216: + text: edam:format_1216 + description: Alphabet for an RNA sequence (characters ACGU only) with possible + unknown positions but without ambiguity or non-sequence characters. + meaning: edam:format_1216 + title: unambiguous pure rna sequence + edam:format_1217: + text: edam:format_1217 + description: Alphabet for an RNA sequence with possible ambiguity and unknown + positions but without non-sequence characters. + meaning: edam:format_1217 + title: pure rna + edam:format_1218: + text: edam:format_1218 + description: Alphabet for any protein sequence with possible unknown positions + but without ambiguity or non-sequence characters. + meaning: edam:format_1218 + title: unambiguous pure protein + edam:format_1219: + text: edam:format_1219 + description: Alphabet for any protein sequence with possible ambiguity and + unknown positions but without non-sequence characters. + meaning: edam:format_1219 + title: pure protein + edam:format_1248: + text: edam:format_1248 + description: Format for sequence positions (feature location) as used in DDBJ/EMBL/GenBank + database. + meaning: edam:format_1248 + title: EMBL feature location + edam:format_1295: + text: edam:format_1295 + description: Report format for tandem repeats in a nucleotide sequence (format + generated by the Sanger Centre quicktandem program). + meaning: edam:format_1295 + title: quicktandem + edam:format_1296: + text: edam:format_1296 + description: Report format for inverted repeats in a nucleotide sequence (format + generated by the Sanger Centre inverted program). + meaning: edam:format_1296 + title: Sanger inverted repeats + edam:format_1297: + text: edam:format_1297 + description: Report format for tandem repeats in a sequence (an EMBOSS report + format). + meaning: edam:format_1297 + title: EMBOSS repeat + edam:format_1316: + text: edam:format_1316 + description: Format of a report on exon-intron structure generated by EMBOSS + est2genome. + meaning: edam:format_1316 + title: est2genome format + edam:format_1318: + text: edam:format_1318 + description: Report format for restriction enzyme recognition sites used by + EMBOSS restrict program. + meaning: edam:format_1318 + title: restrict format + edam:format_1319: + text: edam:format_1319 + description: Report format for restriction enzyme recognition sites used by + EMBOSS restover program. + meaning: edam:format_1319 + title: restover format + edam:format_1320: + text: edam:format_1320 + description: Report format for restriction enzyme recognition sites used by + REBASE database. + meaning: edam:format_1320 + title: REBASE restriction sites + edam:format_1332: + text: edam:format_1332 + description: Format of results of a sequence database search using FASTA. + meaning: edam:format_1332 + title: FASTA search results format + edam:format_1333: + text: edam:format_1333 + description: Format of results of a sequence database search using some variant + of BLAST. + meaning: edam:format_1333 + title: BLAST results + edam:format_1334: + text: edam:format_1334 + description: Format of results of a sequence database search using some variant + of MSPCrunch. + meaning: edam:format_1334 + title: mspcrunch + edam:format_1335: + text: edam:format_1335 + description: Format of results of a sequence database search using some variant + of Smith Waterman. + meaning: edam:format_1335 + title: Smith-Waterman format + edam:format_1336: + text: edam:format_1336 + description: Format of EMBASSY domain hits file (DHF) of hits (sequences) + with domain classification information. + meaning: edam:format_1336 + title: dhf + edam:format_1337: + text: edam:format_1337 + description: Format of EMBASSY ligand hits file (LHF) of database hits (sequences) + with ligand classification information. + meaning: edam:format_1337 + title: lhf + edam:format_1341: + text: edam:format_1341 + description: Results format for searches of the InterPro database. + meaning: edam:format_1341 + title: InterPro hits format + edam:format_1342: + text: edam:format_1342 + description: Format of results of a search of the InterPro database showing + matches of query protein sequence(s) to InterPro entries. + meaning: edam:format_1342 + title: InterPro protein view report format + edam:format_1343: + text: edam:format_1343 + description: Format of results of a search of the InterPro database showing + matches between protein sequence(s) and signatures for an InterPro entry. + meaning: edam:format_1343 + title: InterPro match table format + edam:format_1349: + text: edam:format_1349 + description: Dirichlet distribution HMMER format. + meaning: edam:format_1349 + title: HMMER Dirichlet prior + edam:format_1350: + text: edam:format_1350 + description: Dirichlet distribution MEME format. + meaning: edam:format_1350 + title: MEME Dirichlet prior + edam:format_1351: + text: edam:format_1351 + description: Format of a report from the HMMER package on the emission and + transition counts of a hidden Markov model. + meaning: edam:format_1351 + title: HMMER emission and transition + edam:format_1356: + text: edam:format_1356 + description: Format of a regular expression pattern from the Prosite database. + meaning: edam:format_1356 + title: prosite-pattern + edam:format_1357: + text: edam:format_1357 + description: Format of an EMBOSS sequence pattern. + meaning: edam:format_1357 + title: EMBOSS sequence pattern + edam:format_1360: + text: edam:format_1360 + description: A motif in the format generated by the MEME program. + meaning: edam:format_1360 + title: meme-motif + edam:format_1366: + text: edam:format_1366 + description: Sequence profile (sequence classifier) format used in the PROSITE + database. + meaning: edam:format_1366 + title: prosite-profile + edam:format_1367: + text: edam:format_1367 + description: A profile (sequence classifier) in the format used in the JASPAR + database. + meaning: edam:format_1367 + title: JASPAR format + edam:format_1369: + text: edam:format_1369 + description: Format of the model of random sequences used by MEME. + meaning: edam:format_1369 + title: MEME background Markov model + edam:format_1370: + text: edam:format_1370 + description: Format of a hidden Markov model representation used by the HMMER + package. + meaning: edam:format_1370 + title: HMMER format + edam:format_1391: + text: edam:format_1391 + description: FASTA-style format for multiple sequences aligned by HMMER package + to an HMM. + meaning: edam:format_1391 + title: HMMER-aln + edam:format_1392: + text: edam:format_1392 + description: Format of multiple sequences aligned by DIALIGN package. + meaning: edam:format_1392 + title: DIALIGN format + edam:format_1393: + text: edam:format_1393 + description: EMBASSY 'domain alignment file' (DAF) format, containing a sequence + alignment of protein domains belonging to the same SCOP or CATH family. + meaning: edam:format_1393 + title: daf + edam:format_1419: + text: edam:format_1419 + description: Format for alignment of molecular sequences to MEME profiles + (position-dependent scoring matrices) as generated by the MAST tool from + the MEME package. + meaning: edam:format_1419 + title: Sequence-MEME profile alignment + edam:format_1421: + text: edam:format_1421 + description: Format used by the HMMER package for an alignment of a sequence + against a hidden Markov model database. + meaning: edam:format_1421 + title: HMMER profile alignment (sequences versus HMMs) + edam:format_1422: + text: edam:format_1422 + description: Format used by the HMMER package for of an alignment of a hidden + Markov model against a sequence database. + meaning: edam:format_1422 + title: HMMER profile alignment (HMM versus sequences) + edam:format_1423: + text: edam:format_1423 + description: Format of PHYLIP phylogenetic distance matrix data. + meaning: edam:format_1423 + title: Phylip distance matrix + edam:format_1424: + text: edam:format_1424 + description: Dendrogram (tree file) format generated by ClustalW. + meaning: edam:format_1424 + title: ClustalW dendrogram + edam:format_1425: + text: edam:format_1425 + description: Raw data file format used by Phylip from which a phylogenetic + tree is directly generated or plotted. + meaning: edam:format_1425 + title: Phylip tree raw + edam:format_1430: + text: edam:format_1430 + description: PHYLIP file format for continuous quantitative character data. + meaning: edam:format_1430 + title: Phylip continuous quantitative characters + edam:format_1432: + text: edam:format_1432 + description: PHYLIP file format for phylogenetics character frequency data. + meaning: edam:format_1432 + title: Phylip character frequencies format + edam:format_1433: + text: edam:format_1433 + description: Format of PHYLIP discrete states data. + meaning: edam:format_1433 + title: Phylip discrete states format + edam:format_1434: + text: edam:format_1434 + description: Format of PHYLIP cliques data. + meaning: edam:format_1434 + title: Phylip cliques format + edam:format_1435: + text: edam:format_1435 + description: Phylogenetic tree data format used by the PHYLIP program. + meaning: edam:format_1435 + title: Phylip tree format + edam:format_1436: + text: edam:format_1436 + description: The format of an entry from the TreeBASE database of phylogenetic + data. + meaning: edam:format_1436 + title: TreeBASE format + edam:format_1437: + text: edam:format_1437 + description: The format of an entry from the TreeFam database of phylogenetic + data. + meaning: edam:format_1437 + title: TreeFam format + edam:format_1445: + text: edam:format_1445 + description: Format for distances, such as Branch Score distance, between + two or more phylogenetic trees as used by the Phylip package. + meaning: edam:format_1445 + title: Phylip tree distance format + edam:format_1454: + text: edam:format_1454 + description: Format of an entry from the DSSP database (Dictionary of Secondary + Structure in Proteins). + meaning: edam:format_1454 + title: dssp + edam:format_1455: + text: edam:format_1455 + description: Entry format of the HSSP database (Homology-derived Secondary + Structure in Proteins). + meaning: edam:format_1455 + title: hssp + edam:format_1457: + text: edam:format_1457 + description: Format of RNA secondary structure in dot-bracket notation, originally + generated by the Vienna RNA package/server. + meaning: edam:format_1457 + title: Dot-bracket format + edam:format_1458: + text: edam:format_1458 + description: Format of local RNA secondary structure components with free + energy values, generated by the Vienna RNA package/server. + meaning: edam:format_1458 + title: Vienna local RNA secondary structure format + edam:format_1475: + text: edam:format_1475 + description: Format of an entry (or part of an entry) from the PDB database. + meaning: edam:format_1475 + title: PDB database entry format + edam:format_1476: + text: edam:format_1476 + description: Entry format of PDB database in PDB format. + meaning: edam:format_1476 + title: PDB + edam:format_1477: + text: edam:format_1477 + description: Entry format of PDB database in mmCIF format. + meaning: edam:format_1477 + title: mmCIF + edam:format_1478: + text: edam:format_1478 + description: Entry format of PDB database in PDBML (XML) format. + meaning: edam:format_1478 + title: PDBML + edam:format_1504: + text: edam:format_1504 + description: Amino acid index format used by the AAindex database. + meaning: edam:format_1504 + title: aaindex + edam:format_1551: + text: edam:format_1551 + description: Format of output of the Pcons Model Quality Assessment Program + (MQAP). + meaning: edam:format_1551 + title: Pcons report format + edam:format_1552: + text: edam:format_1552 + description: Format of output of the ProQ protein model quality predictor. + meaning: edam:format_1552 + title: ProQ report format + edam:format_1582: + text: edam:format_1582 + description: A report format for the kinetics of enzyme-catalysed reaction(s) + in a format generated by EMBOSS findkm. This includes Michaelis Menten plot, + Hanes Woolf plot, Michaelis Menten constant (Km) and maximum velocity (Vmax). + meaning: edam:format_1582 + title: findkm + edam:format_1627: + text: edam:format_1627 + description: Report format on PCR primers and hybridisation oligos as generated + by Whitehead primer3 program. + meaning: edam:format_1627 + title: Primer3 primer + edam:format_1628: + text: edam:format_1628 + description: A format of raw sequence read data from an Applied Biosystems + sequencing machine. + meaning: edam:format_1628 + title: ABI + edam:format_1629: + text: edam:format_1629 + description: Format of MIRA sequence trace information file. + meaning: edam:format_1629 + title: mira + edam:format_1630: + text: edam:format_1630 + description: Common Assembly Format (CAF). A sequence assembly format including + contigs, base-call qualities, and other metadata. + meaning: edam:format_1630 + title: CAF + edam:format_1631: + text: edam:format_1631 + description: Sequence assembly project file EXP format. + meaning: edam:format_1631 + title: EXP + edam:format_1632: + text: edam:format_1632 + description: Staden Chromatogram Files format (SCF) of base-called sequence + reads, qualities, and other metadata. + meaning: edam:format_1632 + title: SCF + edam:format_1633: + text: edam:format_1633 + description: PHD sequence trace format to store serialised chromatogram data + (reads). + meaning: edam:format_1633 + title: PHD + edam:format_1637: + text: edam:format_1637 + description: Format of Affymetrix data file of raw image data. + meaning: edam:format_1637 + title: dat + edam:format_1638: + text: edam:format_1638 + description: Format of Affymetrix data file of information about (raw) expression + levels of the individual probes. + meaning: edam:format_1638 + title: cel + edam:format_1639: + text: edam:format_1639 + description: Format of affymetrix gene cluster files (hc-genes.txt, hc-chips.txt) + from hierarchical clustering. + meaning: edam:format_1639 + title: affymetrix + edam:format_1641: + text: edam:format_1641 + description: Affymetrix data file format for information about experimental + conditions and protocols. + meaning: edam:format_1641 + title: affymetrix-exp + edam:format_1644: + text: edam:format_1644 + description: Format of Affymetrix data file of information about (normalised) + expression levels of the individual probes. + meaning: edam:format_1644 + title: CHP + edam:format_1665: + text: edam:format_1665 + description: Format of Taverna workflows. + meaning: edam:format_1665 + title: Taverna workflow format + edam:format_1705: + text: edam:format_1705 + description: The format of an entry from the HET group dictionary (HET groups + from PDB files). + meaning: edam:format_1705 + title: HET group dictionary entry format + edam:format_1734: + text: edam:format_1734 + description: Format of bibliographic reference as used by the PubMed database. + meaning: edam:format_1734 + title: PubMed citation + edam:format_1735: + text: edam:format_1735 + description: Format for abstracts of scientific articles from the Medline + database. + meaning: edam:format_1735 + title: Medline Display Format + edam:format_1736: + text: edam:format_1736 + description: CiteXplore 'core' citation format including title, journal, authors + and abstract. + meaning: edam:format_1736 + title: CiteXplore-core + edam:format_1737: + text: edam:format_1737 + description: CiteXplore 'all' citation format includes all known details such + as Mesh terms and cross-references. + meaning: edam:format_1737 + title: CiteXplore-all + edam:format_1739: + text: edam:format_1739 + description: Article format of the PubMed Central database. + meaning: edam:format_1739 + title: pmc + edam:format_1740: + text: edam:format_1740 + description: The format of iHOP (Information Hyperlinked over Proteins) text-mining + result. + meaning: edam:format_1740 + title: iHOP format + edam:format_1741: + text: edam:format_1741 + description: OSCAR format of annotated chemical text. + meaning: edam:format_1741 + title: OSCAR format + edam:format_1861: + text: edam:format_1861 + description: Map of a plasmid (circular DNA) in PlasMapper TextMap format. + meaning: edam:format_1861 + title: PlasMapper TextMap + edam:format_1910: + text: edam:format_1910 + description: Phylogenetic tree Newick (text) format. + meaning: edam:format_1910 + title: newick + edam:format_1911: + text: edam:format_1911 + description: Phylogenetic tree TreeCon (text) format. + meaning: edam:format_1911 + title: TreeCon format + edam:format_1912: + text: edam:format_1912 + description: Phylogenetic tree Nexus (text) format. + meaning: edam:format_1912 + title: Nexus format + edam:format_1919: + text: edam:format_1919 + description: Data format for a molecular sequence record. + meaning: edam:format_1919 + title: Sequence record format + edam:format_1920: + text: edam:format_1920 + description: Data format for molecular sequence feature information. + meaning: edam:format_1920 + title: Sequence feature annotation format + edam:format_1921: + text: edam:format_1921 + description: Data format for molecular sequence alignment information. + meaning: edam:format_1921 + title: Alignment format + edam:format_1923: + text: edam:format_1923 + description: ACEDB sequence format. + meaning: edam:format_1923 + title: acedb + edam:format_1925: + text: edam:format_1925 + description: Codata entry format. + meaning: edam:format_1925 + title: codata + edam:format_1926: + text: edam:format_1926 + description: Fasta format variant with database name before ID. + meaning: edam:format_1926 + title: dbid + edam:format_1927: + text: edam:format_1927 + description: EMBL entry format. + meaning: edam:format_1927 + title: EMBL format + edam:format_1928: + text: edam:format_1928 + description: Staden experiment file format. + meaning: edam:format_1928 + title: Staden experiment format + edam:format_1929: + text: edam:format_1929 + description: FASTA format including NCBI-style IDs. + meaning: edam:format_1929 + title: FASTA + edam:format_1930: + text: edam:format_1930 + description: FASTQ short read format ignoring quality scores. + meaning: edam:format_1930 + title: FASTQ + edam:format_1931: + text: edam:format_1931 + description: FASTQ Illumina 1.3 short read format. + meaning: edam:format_1931 + title: FASTQ-illumina + edam:format_1932: + text: edam:format_1932 + description: FASTQ short read format with phred quality. + meaning: edam:format_1932 + title: FASTQ-sanger + edam:format_1933: + text: edam:format_1933 + description: FASTQ Solexa/Illumina 1.0 short read format. + meaning: edam:format_1933 + title: FASTQ-solexa + edam:format_1934: + text: edam:format_1934 + description: Fitch program format. + meaning: edam:format_1934 + title: fitch program + edam:format_1935: + text: edam:format_1935 + description: GCG sequence file format. + meaning: edam:format_1935 + title: GCG + edam:format_1936: + text: edam:format_1936 + description: Genbank entry format. + meaning: edam:format_1936 + title: GenBank format + edam:format_1937: + text: edam:format_1937 + description: Genpept protein entry format. + meaning: edam:format_1937 + title: genpept + edam:format_1938: + text: edam:format_1938 + description: GFF feature file format with sequence in the header. + meaning: edam:format_1938 + title: GFF2-seq + edam:format_1939: + text: edam:format_1939 + description: GFF3 feature file format with sequence. + meaning: edam:format_1939 + title: GFF3-seq + edam:format_1940: + text: edam:format_1940 + description: FASTA sequence format including NCBI-style GIs. + meaning: edam:format_1940 + title: giFASTA format + edam:format_1941: + text: edam:format_1941 + description: Hennig86 output sequence format. + meaning: edam:format_1941 + title: hennig86 + edam:format_1942: + text: edam:format_1942 + description: Intelligenetics sequence format. + meaning: edam:format_1942 + title: ig + edam:format_1943: + text: edam:format_1943 + description: Intelligenetics sequence format (strict version). + meaning: edam:format_1943 + title: igstrict + edam:format_1944: + text: edam:format_1944 + description: Jackknifer interleaved and non-interleaved sequence format. + meaning: edam:format_1944 + title: jackknifer + edam:format_1945: + text: edam:format_1945 + description: Mase program sequence format. + meaning: edam:format_1945 + title: mase format + edam:format_1946: + text: edam:format_1946 + description: Mega interleaved and non-interleaved sequence format. + meaning: edam:format_1946 + title: mega-seq + edam:format_1947: + text: edam:format_1947 + description: GCG MSF (multiple sequence file) file format. + meaning: edam:format_1947 + title: GCG MSF + edam:format_1948: + text: edam:format_1948 + description: NBRF/PIR entry sequence format. + meaning: edam:format_1948 + title: nbrf/pir + edam:format_1949: + text: edam:format_1949 + description: Nexus/paup interleaved sequence format. + meaning: edam:format_1949 + title: nexus-seq + edam:format_1950: + text: edam:format_1950 + description: PDB sequence format (ATOM lines). + meaning: edam:format_1950 + title: pdbatom + edam:format_1951: + text: edam:format_1951 + description: PDB nucleotide sequence format (ATOM lines). + meaning: edam:format_1951 + title: pdbatomnuc + edam:format_1952: + text: edam:format_1952 + description: PDB nucleotide sequence format (SEQRES lines). + meaning: edam:format_1952 + title: pdbseqresnuc + edam:format_1953: + text: edam:format_1953 + description: PDB sequence format (SEQRES lines). + meaning: edam:format_1953 + title: pdbseqres + edam:format_1954: + text: edam:format_1954 + description: Plain old FASTA sequence format (unspecified format for IDs). + meaning: edam:format_1954 + title: Pearson format + edam:format_1957: + text: edam:format_1957 + description: Raw sequence format with no non-sequence characters. + meaning: edam:format_1957 + title: raw + edam:format_1958: + text: edam:format_1958 + description: Refseq protein entry sequence format. + meaning: edam:format_1958 + title: refseqp + edam:format_1960: + text: edam:format_1960 + description: Staden suite sequence format. + meaning: edam:format_1960 + title: Staden format + edam:format_1961: + text: edam:format_1961 + description: Stockholm multiple sequence alignment format (used by Pfam and + Rfam). + meaning: edam:format_1961 + title: Stockholm format + edam:format_1962: + text: edam:format_1962 + description: DNA strider output sequence format. + meaning: edam:format_1962 + title: strider format + edam:format_1963: + text: edam:format_1963 + description: UniProtKB entry sequence format. + meaning: edam:format_1963 + title: UniProtKB format + edam:format_1964: + text: edam:format_1964 + description: Plain text sequence format (essentially unformatted). + meaning: edam:format_1964 + title: plain text format (unformatted) + edam:format_1966: + text: edam:format_1966 + description: NCBI ASN.1-based sequence format. + meaning: edam:format_1966 + title: ASN.1 sequence format + edam:format_1967: + text: edam:format_1967 + description: DAS sequence (XML) format (any type). + meaning: edam:format_1967 + title: DAS format + edam:format_1968: + text: edam:format_1968 + description: DAS sequence (XML) format (nucleotide-only). + meaning: edam:format_1968 + title: dasdna + edam:format_1969: + text: edam:format_1969 + description: EMBOSS debugging trace sequence format of full internal data + content. + meaning: edam:format_1969 + title: debug-seq + edam:format_1970: + text: edam:format_1970 + description: Jackknifer output sequence non-interleaved format. + meaning: edam:format_1970 + title: jackknifernon + edam:format_1972: + text: edam:format_1972 + description: NCBI FASTA sequence format with NCBI-style IDs. + meaning: edam:format_1972 + title: NCBI format + edam:format_1973: + text: edam:format_1973 + description: Nexus/paup non-interleaved sequence format. + meaning: edam:format_1973 + title: nexusnon + edam:format_1974: + text: edam:format_1974 + description: General Feature Format (GFF) of sequence features. + meaning: edam:format_1974 + title: GFF2 + edam:format_1975: + text: edam:format_1975 + description: Generic Feature Format version 3 (GFF3) of sequence features. + meaning: edam:format_1975 + title: GFF3 + edam:format_1978: + text: edam:format_1978 + description: DAS GFF (XML) feature format. + meaning: edam:format_1978 + title: DASGFF + edam:format_1979: + text: edam:format_1979 + description: EMBOSS debugging trace feature format of full internal data content. + meaning: edam:format_1979 + title: debug-feat + edam:format_1982: + text: edam:format_1982 + description: ClustalW format for (aligned) sequences. + meaning: edam:format_1982 + title: ClustalW format + edam:format_1983: + text: edam:format_1983 + description: EMBOSS alignment format for debugging trace of full internal + data content. + meaning: edam:format_1983 + title: debug + edam:format_1984: + text: edam:format_1984 + description: Fasta format for (aligned) sequences. + meaning: edam:format_1984 + title: FASTA-aln + edam:format_1985: + text: edam:format_1985 + description: Pearson MARKX0 alignment format. + meaning: edam:format_1985 + title: markx0 + edam:format_1986: + text: edam:format_1986 + description: Pearson MARKX1 alignment format. + meaning: edam:format_1986 + title: markx1 + edam:format_1987: + text: edam:format_1987 + description: Pearson MARKX10 alignment format. + meaning: edam:format_1987 + title: markx10 + edam:format_1988: + text: edam:format_1988 + description: Pearson MARKX2 alignment format. + meaning: edam:format_1988 + title: markx2 + edam:format_1989: + text: edam:format_1989 + description: Pearson MARKX3 alignment format. + meaning: edam:format_1989 + title: markx3 + edam:format_1990: + text: edam:format_1990 + description: Alignment format for start and end of matches between sequence + pairs. + meaning: edam:format_1990 + title: match + edam:format_1991: + text: edam:format_1991 + description: Mega format for (typically aligned) sequences. + meaning: edam:format_1991 + title: mega + edam:format_1992: + text: edam:format_1992 + description: Mega non-interleaved format for (typically aligned) sequences. + meaning: edam:format_1992 + title: meganon + edam:format_1996: + text: edam:format_1996 + description: EMBOSS simple sequence pairwise alignment format. + meaning: edam:format_1996 + title: pair + edam:format_1997: + text: edam:format_1997 + description: Phylip format for (aligned) sequences. + meaning: edam:format_1997 + title: PHYLIP format + edam:format_1998: + text: edam:format_1998 + description: Phylip non-interleaved format for (aligned) sequences. + meaning: edam:format_1998 + title: PHYLIP sequential + edam:format_1999: + text: edam:format_1999 + description: Alignment format for score values for pairs of sequences. + meaning: edam:format_1999 + title: scores format + edam:format_2000: + text: edam:format_2000 + description: SELEX format for (aligned) sequences. + meaning: edam:format_2000 + title: selex + edam:format_2001: + text: edam:format_2001 + description: EMBOSS simple multiple alignment format. + meaning: edam:format_2001 + title: EMBOSS simple format + edam:format_2002: + text: edam:format_2002 + description: Simple multiple sequence (alignment) format for SRS. + meaning: edam:format_2002 + title: srs format + edam:format_2003: + text: edam:format_2003 + description: Simple sequence pair (alignment) format for SRS. + meaning: edam:format_2003 + title: srspair + edam:format_2004: + text: edam:format_2004 + description: T-Coffee program alignment format. + meaning: edam:format_2004 + title: T-Coffee format + edam:format_2005: + text: edam:format_2005 + description: Treecon format for (aligned) sequences. + meaning: edam:format_2005 + title: TreeCon-seq + edam:format_2006: + text: edam:format_2006 + description: Data format for a phylogenetic tree. + meaning: edam:format_2006 + title: Phylogenetic tree format + edam:format_2013: + text: edam:format_2013 + description: Data format for a biological pathway or network. + meaning: edam:format_2013 + title: Biological pathway or network format + edam:format_2014: + text: edam:format_2014 + description: Data format for a sequence-profile alignment. + meaning: edam:format_2014 + title: Sequence-profile alignment format + edam:format_2017: + text: edam:format_2017 + description: Data format for an amino acid index. + meaning: edam:format_2017 + title: Amino acid index format + edam:format_2020: + text: edam:format_2020 + description: Data format for a full-text scientific article. + meaning: edam:format_2020 + title: Article format + edam:format_2021: + text: edam:format_2021 + description: Data format of a report from text mining. + meaning: edam:format_2021 + title: Text mining report format + edam:format_2027: + text: edam:format_2027 + description: Data format for reports on enzyme kinetics. + meaning: edam:format_2027 + title: Enzyme kinetics report format + edam:format_2030: + text: edam:format_2030 + description: Format of a report on a chemical compound. + meaning: edam:format_2030 + title: Chemical data format + edam:format_2031: + text: edam:format_2031 + description: Format of a report on a particular locus, gene, gene system or + groups of genes. + meaning: edam:format_2031 + title: Gene annotation format + edam:format_2032: + text: edam:format_2032 + description: Format of a workflow. + meaning: edam:format_2032 + title: Workflow format + edam:format_2033: + text: edam:format_2033 + description: Data format for a molecular tertiary structure. + meaning: edam:format_2033 + title: Tertiary structure format + edam:format_2035: + text: edam:format_2035 + description: Text format of a chemical formula. + meaning: edam:format_2035 + title: Chemical formula format + edam:format_2036: + text: edam:format_2036 + description: Format of raw (unplotted) phylogenetic data. + meaning: edam:format_2036 + title: Phylogenetic character data format + edam:format_2037: + text: edam:format_2037 + description: Format of phylogenetic continuous quantitative character data. + meaning: edam:format_2037 + title: Phylogenetic continuous quantitative character format + edam:format_2038: + text: edam:format_2038 + description: Format of phylogenetic discrete states data. + meaning: edam:format_2038 + title: Phylogenetic discrete states format + edam:format_2039: + text: edam:format_2039 + description: Format of phylogenetic cliques data. + meaning: edam:format_2039 + title: Phylogenetic tree report (cliques) format + edam:format_2040: + text: edam:format_2040 + description: Format of phylogenetic invariants data. + meaning: edam:format_2040 + title: Phylogenetic tree report (invariants) format + edam:format_2049: + text: edam:format_2049 + description: Format for phylogenetic tree distance data. + meaning: edam:format_2049 + title: Phylogenetic tree report (tree distances) format + edam:format_2052: + text: edam:format_2052 + description: Format for reports on a protein family. + meaning: edam:format_2052 + title: Protein family report format + edam:format_2054: + text: edam:format_2054 + description: Format for molecular interaction data. + meaning: edam:format_2054 + title: Protein interaction format + edam:format_2055: + text: edam:format_2055 + description: Format for sequence assembly data. + meaning: edam:format_2055 + title: Sequence assembly format + edam:format_2056: + text: edam:format_2056 + description: Format for information about a microarray experimental per se + (not the data generated from that experiment). + meaning: edam:format_2056 + title: Microarray experiment data format + edam:format_2057: + text: edam:format_2057 + description: Format for sequence trace data (i.e. including base call information). + meaning: edam:format_2057 + title: Sequence trace format + edam:format_2058: + text: edam:format_2058 + description: Format of a file of gene expression data, e.g. a gene expression + matrix or profile. + meaning: edam:format_2058 + title: Gene expression report format + edam:format_2060: + text: edam:format_2060 + description: Format of a map of (typically one) molecular sequence annotated + with features. + meaning: edam:format_2060 + title: Map format + edam:format_2061: + text: edam:format_2061 + description: Format of a report on PCR primers or hybridisation oligos in + a nucleic acid sequence. + meaning: edam:format_2061 + title: Nucleic acid features (primers) format + edam:format_2062: + text: edam:format_2062 + description: Format of a report of general information about a specific protein. + meaning: edam:format_2062 + title: Protein report format + edam:format_2064: + text: edam:format_2064 + description: Format of a matrix of 3D-1D scores (amino acid environment probabilities). + meaning: edam:format_2064 + title: 3D-1D scoring matrix format + edam:format_2065: + text: edam:format_2065 + description: Format of a report on the quality of a protein three-dimensional + model. + meaning: edam:format_2065 + title: Protein structure report (quality evaluation) format + edam:format_2066: + text: edam:format_2066 + description: Format of a report on sequence hits and associated data from + searching a sequence database. + meaning: edam:format_2066 + title: Database hits (sequence) format + edam:format_2067: + text: edam:format_2067 + description: Format of a matrix of genetic distances between molecular sequences. + meaning: edam:format_2067 + title: Sequence distance matrix format + edam:format_2068: + text: edam:format_2068 + description: Format of a sequence motif. + meaning: edam:format_2068 + title: Sequence motif format + edam:format_2069: + text: edam:format_2069 + description: Format of a sequence profile. + meaning: edam:format_2069 + title: Sequence profile format + edam:format_2072: + text: edam:format_2072 + description: Format of a hidden Markov model. + meaning: edam:format_2072 + title: Hidden Markov model format + edam:format_2074: + text: edam:format_2074 + description: Data format of a dirichlet distribution. + meaning: edam:format_2074 + title: Dirichlet distribution format + edam:format_2075: + text: edam:format_2075 + description: Data format for the emission and transition counts of a hidden + Markov model. + meaning: edam:format_2075 + title: HMM emission and transition counts format + edam:format_2076: + text: edam:format_2076 + description: Format for secondary structure (predicted or real) of an RNA + molecule. + meaning: edam:format_2076 + title: RNA secondary structure format + edam:format_2077: + text: edam:format_2077 + description: Format for secondary structure (predicted or real) of a protein + molecule. + meaning: edam:format_2077 + title: Protein secondary structure format + edam:format_2078: + text: edam:format_2078 + description: Format used to specify range(s) of sequence positions. + meaning: edam:format_2078 + title: Sequence range format + edam:format_2094: + text: edam:format_2094 + description: Alphabet for molecular sequence with possible unknown positions + but without non-sequence characters. + meaning: edam:format_2094 + title: pure + edam:format_2095: + text: edam:format_2095 + description: Alphabet for a molecular sequence with possible unknown positions + but possibly with non-sequence characters. + meaning: edam:format_2095 + title: unpure + edam:format_2096: + text: edam:format_2096 + description: Alphabet for a molecular sequence with possible unknown positions + but without ambiguity characters. + meaning: edam:format_2096 + title: unambiguous sequence + edam:format_2097: + text: edam:format_2097 + description: Alphabet for a molecular sequence with possible unknown positions + and possible ambiguity characters. + meaning: edam:format_2097 + title: ambiguous + edam:format_2155: + text: edam:format_2155 + description: Format used for map of repeats in molecular (typically nucleotide) + sequences. + meaning: edam:format_2155 + title: Sequence features (repeats) format + edam:format_2158: + text: edam:format_2158 + description: Format used for report on restriction enzyme recognition sites + in nucleotide sequences. + meaning: edam:format_2158 + title: Nucleic acid features (restriction sites) format + edam:format_2170: + text: edam:format_2170 + description: Format used for clusters of molecular sequences. + meaning: edam:format_2170 + title: Sequence cluster format + edam:format_2171: + text: edam:format_2171 + description: Format used for clusters of protein sequences. + meaning: edam:format_2171 + title: Sequence cluster format (protein) + edam:format_2172: + text: edam:format_2172 + description: Format used for clusters of nucleotide sequences. + meaning: edam:format_2172 + title: Sequence cluster format (nucleic acid) + edam:format_2181: + text: edam:format_2181 + description: A text format resembling EMBL entry format. + meaning: edam:format_2181 + title: EMBL-like (text) + edam:format_2182: + text: edam:format_2182 + description: A text format resembling FASTQ short read format. + meaning: edam:format_2182 + title: FASTQ-like format (text) + edam:format_2183: + text: edam:format_2183 + description: XML format for EMBL entries. + meaning: edam:format_2183 + title: EMBLXML + edam:format_2184: + text: edam:format_2184 + description: Specific XML format for EMBL entries (only uses certain sections). + meaning: edam:format_2184 + title: cdsxml + edam:format_2185: + text: edam:format_2185 + description: INSDSeq provides the elements of a sequence as presented in the + GenBank/EMBL/DDBJ-style flatfile formats, with a small amount of additional + structure. + meaning: edam:format_2185 + title: INSDSeq + edam:format_2186: + text: edam:format_2186 + description: Geneseq sequence format. + meaning: edam:format_2186 + title: geneseq + edam:format_2187: + text: edam:format_2187 + description: A text sequence format resembling uniprotkb entry format. + meaning: edam:format_2187 + title: UniProt-like (text) + edam:format_2194: + text: edam:format_2194 + description: Abstract format used by MedLine database. + meaning: edam:format_2194 + title: medline + edam:format_2195: + text: edam:format_2195 + description: Format used for ontologies. + meaning: edam:format_2195 + title: Ontology format + edam:format_2196: + text: edam:format_2196 + description: A serialisation format conforming to the Open Biomedical Ontologies + (OBO) model. + meaning: edam:format_2196 + title: OBO format + edam:format_2197: + text: edam:format_2197 + description: A serialisation format conforming to the Web Ontology Language + (OWL) model. + meaning: edam:format_2197 + title: OWL format + edam:format_2200: + text: edam:format_2200 + description: A text format resembling FASTA format. + meaning: edam:format_2200 + title: FASTA-like (text) + edam:format_2204: + text: edam:format_2204 + description: An XML format for EMBL entries. + meaning: edam:format_2204 + title: EMBL format (XML) + edam:format_2205: + text: edam:format_2205 + description: A text format resembling GenBank entry (plain text) format. + meaning: edam:format_2205 + title: GenBank-like format (text) + edam:format_2206: + text: edam:format_2206 + description: Text format for a sequence feature table. + meaning: edam:format_2206 + title: Sequence feature table format (text) + edam:format_2304: + text: edam:format_2304 + description: Entry format (XML) for the STRING database of protein interaction. + meaning: edam:format_2304 + title: STRING entry format (XML) + edam:format_2305: + text: edam:format_2305 + description: GFF feature format (of indeterminate version). + meaning: edam:format_2305 + title: GFF + edam:format_2306: + text: edam:format_2306 + description: Gene Transfer Format (GTF), a restricted version of GFF. + meaning: edam:format_2306 + title: GTF + edam:format_2310: + text: edam:format_2310 + description: FASTA format wrapped in HTML elements. + meaning: edam:format_2310 + title: FASTA-HTML + edam:format_2311: + text: edam:format_2311 + description: EMBL entry format wrapped in HTML elements. + meaning: edam:format_2311 + title: EMBL-HTML + edam:format_2330: + text: edam:format_2330 + description: Textual format. + meaning: edam:format_2330 + title: Textual format + edam:format_2331: + text: edam:format_2331 + description: HTML format. + meaning: edam:format_2331 + title: HTML + edam:format_2332: + text: edam:format_2332 + description: eXtensible Markup Language (XML) format. + meaning: edam:format_2332 + title: XML + edam:format_2333: + text: edam:format_2333 + description: Binary format. + meaning: edam:format_2333 + title: Binary format + edam:format_2350: + text: edam:format_2350 + description: A placeholder concept for visual navigation by dividing data + formats by the content of the data that is represented. + meaning: edam:format_2350 + title: Format (by type of data) + edam:format_2352: + text: edam:format_2352 + description: BioXSD-schema-based XML format of sequence-based data and some + other common data - sequence records, alignments, feature records, references + to resources, and more - optimised for integrative bioinformatics, Web services, + and object-oriented programming. + meaning: edam:format_2352 + title: BioXSD (XML) + edam:format_2376: + text: edam:format_2376 + description: A serialisation format conforming to the Resource Description + Framework (RDF) model. + meaning: edam:format_2376 + title: RDF format + edam:format_2532: + text: edam:format_2532 + description: Genbank entry format wrapped in HTML elements. + meaning: edam:format_2532 + title: GenBank-HTML + edam:format_2543: + text: edam:format_2543 + description: A format resembling EMBL entry (plain text) format. + meaning: edam:format_2543 + title: EMBL-like format + edam:format_2545: + text: edam:format_2545 + description: A format resembling FASTQ short read format. + meaning: edam:format_2545 + title: FASTQ-like format + edam:format_2546: + text: edam:format_2546 + description: A format resembling FASTA format. + meaning: edam:format_2546 + title: FASTA-like + edam:format_2547: + text: edam:format_2547 + description: A sequence format resembling uniprotkb entry format. + meaning: edam:format_2547 + title: uniprotkb-like format + edam:format_2548: + text: edam:format_2548 + description: Format for a sequence feature table. + meaning: edam:format_2548 + title: Sequence feature table format + edam:format_2549: + text: edam:format_2549 + description: OBO ontology text format. + meaning: edam:format_2549 + title: OBO + edam:format_2550: + text: edam:format_2550 + description: OBO ontology XML format. + meaning: edam:format_2550 + title: OBO-XML + edam:format_2551: + text: edam:format_2551 + description: Data format for a molecular sequence record (text). + meaning: edam:format_2551 + title: Sequence record format (text) + edam:format_2552: + text: edam:format_2552 + description: Data format for a molecular sequence record (XML). + meaning: edam:format_2552 + title: Sequence record format (XML) + edam:format_2553: + text: edam:format_2553 + description: XML format for a sequence feature table. + meaning: edam:format_2553 + title: Sequence feature table format (XML) + edam:format_2554: + text: edam:format_2554 + description: Text format for molecular sequence alignment information. + meaning: edam:format_2554 + title: Alignment format (text) + edam:format_2555: + text: edam:format_2555 + description: XML format for molecular sequence alignment information. + meaning: edam:format_2555 + title: Alignment format (XML) + edam:format_2556: + text: edam:format_2556 + description: Text format for a phylogenetic tree. + meaning: edam:format_2556 + title: Phylogenetic tree format (text) + edam:format_2557: + text: edam:format_2557 + description: XML format for a phylogenetic tree. + meaning: edam:format_2557 + title: Phylogenetic tree format (XML) + edam:format_2558: + text: edam:format_2558 + description: An XML format resembling EMBL entry format. + meaning: edam:format_2558 + title: EMBL-like (XML) + edam:format_2559: + text: edam:format_2559 + description: A format resembling GenBank entry (plain text) format. + meaning: edam:format_2559 + title: GenBank-like format + edam:format_2561: + text: edam:format_2561 + description: Text format for sequence assembly data. + meaning: edam:format_2561 + title: Sequence assembly format (text) + edam:format_2566: + text: edam:format_2566 + description: Alphabet for a molecular sequence without any unknown positions + or ambiguity characters. + meaning: edam:format_2566 + title: completely unambiguous + edam:format_2567: + text: edam:format_2567 + description: Alphabet for a molecular sequence without unknown positions, + ambiguity or non-sequence characters. + meaning: edam:format_2567 + title: completely unambiguous pure + edam:format_2568: + text: edam:format_2568 + description: Alphabet for a nucleotide sequence (characters ACGTU only) without + unknown positions, ambiguity or non-sequence characters . + meaning: edam:format_2568 + title: completely unambiguous pure nucleotide + edam:format_2569: + text: edam:format_2569 + description: Alphabet for a DNA sequence (characters ACGT only) without unknown + positions, ambiguity or non-sequence characters. + meaning: edam:format_2569 + title: completely unambiguous pure dna + edam:format_2570: + text: edam:format_2570 + description: Alphabet for an RNA sequence (characters ACGU only) without unknown + positions, ambiguity or non-sequence characters. + meaning: edam:format_2570 + title: completely unambiguous pure rna sequence + edam:format_2571: + text: edam:format_2571 + description: Format of a raw molecular sequence (i.e. the alphabet used). + meaning: edam:format_2571 + title: Raw sequence format + edam:format_2572: + text: edam:format_2572 + description: BAM format, the binary, BGZF-formatted compressed version of + SAM format for alignment of nucleotide sequences (e.g. sequencing reads) + to (a) reference sequence(s). May contain base-call and alignment qualities + and other data. + meaning: edam:format_2572 + title: BAM + edam:format_2573: + text: edam:format_2573 + description: Sequence Alignment/Map (SAM) format for alignment of nucleotide + sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain + base-call and alignment qualities and other data. + meaning: edam:format_2573 + title: SAM + edam:format_2585: + text: edam:format_2585 + description: Systems Biology Markup Language (SBML), the standard XML format + for models of biological processes such as for example metabolism, cell + signaling, and gene regulation. + meaning: edam:format_2585 + title: SBML + edam:format_2607: + text: edam:format_2607 + description: Alphabet for any protein sequence without unknown positions, + ambiguity or non-sequence characters. + meaning: edam:format_2607 + title: completely unambiguous pure protein + edam:format_2848: + text: edam:format_2848 + description: Format of a bibliographic reference. + meaning: edam:format_2848 + title: Bibliographic reference format + edam:format_2919: + text: edam:format_2919 + description: Format of a sequence annotation track. + meaning: edam:format_2919 + title: Sequence annotation track format + edam:format_2920: + text: edam:format_2920 + description: Data format for molecular sequence alignment information that + can hold sequence alignment(s) of only 2 sequences. + meaning: edam:format_2920 + title: Alignment format (pair only) + edam:format_2921: + text: edam:format_2921 + description: Format of sequence variation annotation. + meaning: edam:format_2921 + title: Sequence variation annotation format + edam:format_2922: + text: edam:format_2922 + description: Some variant of Pearson MARKX alignment format. + meaning: edam:format_2922 + title: markx0 variant + edam:format_2923: + text: edam:format_2923 + description: Some variant of Mega format for (typically aligned) sequences. + meaning: edam:format_2923 + title: mega variant + edam:format_2924: + text: edam:format_2924 + description: Some variant of Phylip format for (aligned) sequences. + meaning: edam:format_2924 + title: Phylip format variant + edam:format_3000: + text: edam:format_3000 + description: AB1 binary format of raw DNA sequence reads (output of Applied + Biosystems' sequencing analysis software). Contains an electropherogram + and the DNA base sequence. + meaning: edam:format_3000 + title: AB1 + edam:format_3001: + text: edam:format_3001 + description: ACE sequence assembly format including contigs, base-call qualities, + and other metadata (version Aug 1998 and onwards). + meaning: edam:format_3001 + title: ACE + edam:format_3003: + text: edam:format_3003 + description: Browser Extensible Data (BED) format of sequence annotation track, + typically to be displayed in a genome browser. + meaning: edam:format_3003 + title: BED + edam:format_3004: + text: edam:format_3004 + description: bigBed format for large sequence annotation tracks, similar to + textual BED format. + meaning: edam:format_3004 + title: bigBed + edam:format_3005: + text: edam:format_3005 + description: Wiggle format (WIG) of a sequence annotation track that consists + of a value for each sequence position. Typically to be displayed in a genome + browser. + meaning: edam:format_3005 + title: WIG + edam:format_3006: + text: edam:format_3006 + description: bigWig format for large sequence annotation tracks that consist + of a value for each sequence position. Similar to textual WIG format. + meaning: edam:format_3006 + title: bigWig + edam:format_3007: + text: edam:format_3007 + description: PSL format of alignments, typically generated by BLAT or psLayout. + Can be displayed in a genome browser like a sequence annotation track. + meaning: edam:format_3007 + title: PSL + edam:format_3008: + text: edam:format_3008 + description: Multiple Alignment Format (MAF) supporting alignments of whole + genomes with rearrangements, directions, multiple pieces to the alignment, + and so forth. + meaning: edam:format_3008 + title: MAF + edam:format_3009: + text: edam:format_3009 + description: 2bit binary format of nucleotide sequences using 2 bits per nucleotide. + In addition encodes unknown nucleotides and lower-case 'masking'. + meaning: edam:format_3009 + title: 2bit + edam:format_3010: + text: edam:format_3010 + description: .nib (nibble) binary format of a nucleotide sequence using 4 + bits per nucleotide (including unknown) and its lower-case 'masking'. + meaning: edam:format_3010 + title: .nib + edam:format_3011: + text: edam:format_3011 + description: genePred table format for gene prediction tracks. + meaning: edam:format_3011 + title: genePred + edam:format_3012: + text: edam:format_3012 + description: Personal Genome SNP (pgSnp) format for sequence variation tracks + (indels and polymorphisms), supported by the UCSC Genome Browser. + meaning: edam:format_3012 + title: pgSnp + edam:format_3013: + text: edam:format_3013 + description: axt format of alignments, typically produced from BLASTZ. + meaning: edam:format_3013 + title: axt + edam:format_3014: + text: edam:format_3014 + description: LAV format of alignments generated by BLASTZ and LASTZ. + meaning: edam:format_3014 + title: LAV + edam:format_3015: + text: edam:format_3015 + description: Pileup format of alignment of sequences (e.g. sequencing reads) + to (a) reference sequence(s). Contains aligned bases per base of the reference + sequence(s). + meaning: edam:format_3015 + title: Pileup + edam:format_3016: + text: edam:format_3016 + description: Variant Call Format (VCF) is tabular format for storing genomic + sequence variations. + meaning: edam:format_3016 + title: VCF + edam:format_3017: + text: edam:format_3017 + description: Sequence Read Format (SRF) of sequence trace data. Supports submission + to the NCBI Short Read Archive. + meaning: edam:format_3017 + title: SRF + edam:format_3018: + text: edam:format_3018 + description: ZTR format for storing chromatogram data from DNA sequencing + instruments. + meaning: edam:format_3018 + title: ZTR + edam:format_3019: + text: edam:format_3019 + description: Genome Variation Format (GVF). A GFF3-compatible format with + defined header and attribute tags for sequence variation. + meaning: edam:format_3019 + title: GVF + edam:format_3020: + text: edam:format_3020 + description: BCF is the binary version of Variant Call Format (VCF) for sequence + variation (indels, polymorphisms, structural variation). + meaning: edam:format_3020 + title: BCF + edam:format_3033: + text: edam:format_3033 + description: Format of a matrix (array) of numerical values. + meaning: edam:format_3033 + title: Matrix format + edam:format_3097: + text: edam:format_3097 + description: Format of data concerning the classification of the sequences + and/or structures of protein structural domain(s). + meaning: edam:format_3097 + title: Protein domain classification format + edam:format_3098: + text: edam:format_3098 + description: Format of raw SCOP domain classification data files. + meaning: edam:format_3098 + title: Raw SCOP domain classification format + edam:format_3099: + text: edam:format_3099 + description: Format of raw CATH domain classification data files. + meaning: edam:format_3099 + title: Raw CATH domain classification format + edam:format_3100: + text: edam:format_3100 + description: Format of summary of domain classification information for a + CATH domain. + meaning: edam:format_3100 + title: CATH domain report format + edam:format_3155: + text: edam:format_3155 + description: Systems Biology Result Markup Language (SBRML), the standard + XML format for simulated or calculated results (e.g. trajectories) of systems + biology models. + meaning: edam:format_3155 + title: SBRML + edam:format_3156: + text: edam:format_3156 + description: BioPAX is an exchange format for pathway data, with its data + model defined in OWL. + meaning: edam:format_3156 + title: BioPAX + edam:format_3157: + text: edam:format_3157 + description: EBI Application Result XML is a format returned by sequence similarity + search Web services at EBI. + meaning: edam:format_3157 + title: EBI Application Result XML + edam:format_3158: + text: edam:format_3158 + description: XML Molecular Interaction Format (MIF), standardised by HUPO + PSI MI. + meaning: edam:format_3158 + title: PSI MI XML (MIF) + edam:format_3159: + text: edam:format_3159 + description: phyloXML is a standardised XML format for phylogenetic trees, + networks, and associated data. + meaning: edam:format_3159 + title: phyloXML + edam:format_3160: + text: edam:format_3160 + description: NeXML is a standardised XML format for rich phyloinformatic data. + meaning: edam:format_3160 + title: NeXML + edam:format_3161: + text: edam:format_3161 + description: MAGE-ML XML format for microarray expression data, standardised + by MGED (now FGED). + meaning: edam:format_3161 + title: MAGE-ML + edam:format_3162: + text: edam:format_3162 + description: MAGE-TAB textual format for microarray expression data, standardised + by MGED (now FGED). + meaning: edam:format_3162 + title: MAGE-TAB + edam:format_3163: + text: edam:format_3163 + description: GCDML XML format for genome and metagenome metadata according + to MIGS/MIMS/MIMARKS information standards, standardised by the Genomic + Standards Consortium (GSC). + meaning: edam:format_3163 + title: GCDML + edam:format_3164: + text: edam:format_3164 + description: GTrack is a generic and optimised tabular format for genome or + sequence feature tracks. GTrack unifies the power of other track formats + (e.g. GFF3, BED, WIG), and while optimised in size, adds more flexibility, + customisation, and automation ("machine understandability"). + meaning: edam:format_3164 + title: GTrack + edam:format_3166: + text: edam:format_3166 + description: Data format for a report of information derived from a biological + pathway or network. + meaning: edam:format_3166 + title: Biological pathway or network report format + edam:format_3167: + text: edam:format_3167 + description: Data format for annotation on a laboratory experiment. + meaning: edam:format_3167 + title: Experiment annotation format + edam:format_3235: + text: edam:format_3235 + description: Cytoband format for chromosome cytobands. + meaning: edam:format_3235 + title: Cytoband format + edam:format_3239: + text: edam:format_3239 + description: CopasiML, the native format of COPASI. + meaning: edam:format_3239 + title: CopasiML + edam:format_3240: + text: edam:format_3240 + description: CellML, the format for mathematical models of biological and + other networks. + meaning: edam:format_3240 + title: CellML + edam:format_3242: + text: edam:format_3242 + description: Tabular Molecular Interaction format (MITAB), standardised by + HUPO PSI MI. + meaning: edam:format_3242 + title: PSI MI TAB (MITAB) + edam:format_3243: + text: edam:format_3243 + description: Protein affinity format (PSI-PAR), standardised by HUPO PSI MI. + It is compatible with PSI MI XML (MIF) and uses the same XML Schema. + meaning: edam:format_3243 + title: PSI-PAR + edam:format_3244: + text: edam:format_3244 + description: mzML format for raw spectrometer output data, standardised by + HUPO PSI MSS. + meaning: edam:format_3244 + title: mzML + edam:format_3245: + text: edam:format_3245 + description: Format for mass pectra and derived data, include peptide sequences + etc. + meaning: edam:format_3245 + title: Mass spectrometry data format + edam:format_3246: + text: edam:format_3246 + description: TraML (Transition Markup Language) is the format for mass spectrometry + transitions, standardised by HUPO PSI MSS. + meaning: edam:format_3246 + title: TraML + edam:format_3247: + text: edam:format_3247 + description: mzIdentML is the exchange format for peptides and proteins identified + from mass spectra, standardised by HUPO PSI PI. It can be used for outputs + of proteomics search engines. + meaning: edam:format_3247 + title: mzIdentML + edam:format_3248: + text: edam:format_3248 + description: mzQuantML is the format for quantitation values associated with + peptides, proteins and small molecules from mass spectra, standardised by + HUPO PSI PI. It can be used for outputs of quantitation software for proteomics. + meaning: edam:format_3248 + title: mzQuantML + edam:format_3249: + text: edam:format_3249 + description: GelML is the format for describing the process of gel electrophoresis, + standardised by HUPO PSI PS. + meaning: edam:format_3249 + title: GelML + edam:format_3250: + text: edam:format_3250 + description: spML is the format for describing proteomics sample processing, + other than using gels, prior to mass spectrometric protein identification, + standardised by HUPO PSI PS. It may also be applicable for metabolomics. + meaning: edam:format_3250 + title: spML + edam:format_3252: + text: edam:format_3252 + description: A human-readable encoding for the Web Ontology Language (OWL). + meaning: edam:format_3252 + title: OWL Functional Syntax + edam:format_3253: + text: edam:format_3253 + description: A syntax for writing OWL class expressions. + meaning: edam:format_3253 + title: Manchester OWL Syntax + edam:format_3254: + text: edam:format_3254 + description: A superset of the "Description-Logic Knowledge Representation + System Specification from the KRSS Group of the ARPA Knowledge Sharing Effort". + meaning: edam:format_3254 + title: KRSS2 Syntax + edam:format_3255: + text: edam:format_3255 + description: The Terse RDF Triple Language (Turtle) is a human-friendly serialisation + format for RDF (Resource Description Framework) graphs. + meaning: edam:format_3255 + title: Turtle + edam:format_3256: + text: edam:format_3256 + description: A plain text serialisation format for RDF (Resource Description + Framework) graphs, and a subset of the Turtle (Terse RDF Triple Language) + format. + meaning: edam:format_3256 + title: N-Triples + edam:format_3257: + text: edam:format_3257 + description: A shorthand non-XML serialisation of Resource Description Framework + model, designed with human-readability in mind. + meaning: edam:format_3257 + title: Notation3 + edam:format_3261: + text: edam:format_3261 + description: Resource Description Framework (RDF) XML format. + meaning: edam:format_3261 + title: RDF/XML + edam:format_3262: + text: edam:format_3262 + description: OWL ontology XML serialisation format. + meaning: edam:format_3262 + title: OWL/XML + edam:format_3281: + text: edam:format_3281 + description: The A2M format is used as the primary format for multiple alignments + of protein or nucleic-acid sequences in the SAM suite of tools. It is a + small modification of FASTA format for sequences and is compatible with + most tools that read FASTA. + meaning: edam:format_3281 + title: A2M + edam:format_3284: + text: edam:format_3284 + description: Standard flowgram format (SFF) is a binary file format used to + encode results of pyrosequencing from the 454 Life Sciences platform for + high-throughput sequencing. + meaning: edam:format_3284 + title: SFF + edam:format_3285: + text: edam:format_3285 + description: The MAP file describes SNPs and is used by the Plink package. + meaning: edam:format_3285 + title: MAP + edam:format_3286: + text: edam:format_3286 + description: The PED file describes individuals and genetic data and is used + by the Plink package. + meaning: edam:format_3286 + title: PED + edam:format_3287: + text: edam:format_3287 + description: Data format for a metadata on an individual and their genetic + data. + meaning: edam:format_3287 + title: Individual genetic data format + edam:format_3288: + text: edam:format_3288 + description: The PED/MAP file describes data used by the Plink package. + meaning: edam:format_3288 + title: PED/MAP + edam:format_3309: + text: edam:format_3309 + description: File format of a CT (Connectivity Table) file from the RNAstructure + package. + meaning: edam:format_3309 + title: CT + edam:format_3310: + text: edam:format_3310 + description: XRNA old input style format. + meaning: edam:format_3310 + title: SS + edam:format_3311: + text: edam:format_3311 + description: RNA Markup Language. + meaning: edam:format_3311 + title: RNAML + edam:format_3312: + text: edam:format_3312 + description: Format for the Genetic Data Environment (GDE). + meaning: edam:format_3312 + title: GDE + edam:format_3313: + text: edam:format_3313 + description: A multiple alignment in vertical format, as used in the AMPS + (Alignment of Multiple Protein Sequences) package. + meaning: edam:format_3313 + title: BLC + edam:format_3326: + text: edam:format_3326 + description: Format of a data index of some type. + meaning: edam:format_3326 + title: Data index format + edam:format_3327: + text: edam:format_3327 + description: BAM indexing format. + meaning: edam:format_3327 + title: BAI + edam:format_3328: + text: edam:format_3328 + description: HMMER profile HMM file for HMMER versions 2.x. + meaning: edam:format_3328 + title: HMMER2 + edam:format_3329: + text: edam:format_3329 + description: HMMER profile HMM file for HMMER versions 3.x. + meaning: edam:format_3329 + title: HMMER3 + edam:format_3330: + text: edam:format_3330 + description: PO is the output format of Partial Order Alignment program (POA) + performing Multiple Sequence Alignment (MSA). + meaning: edam:format_3330 + title: PO + edam:format_3331: + text: edam:format_3331 + description: XML format as produced by the NCBI Blast package. + meaning: edam:format_3331 + title: BLAST XML results format + edam:format_3462: + text: edam:format_3462 + description: Reference-based compression of alignment format. + meaning: edam:format_3462 + title: CRAM + edam:format_3464: + text: edam:format_3464 + description: JavaScript Object Notation format; a lightweight, text-based + format to represent tree-structured data using key-value pairs. + meaning: edam:format_3464 + title: JSON + edam:format_3466: + text: edam:format_3466 + description: Encapsulated PostScript format. + meaning: edam:format_3466 + title: EPS + edam:format_3467: + text: edam:format_3467 + description: Graphics Interchange Format. + meaning: edam:format_3467 + title: GIF + edam:format_3468: + text: edam:format_3468 + description: Microsoft Excel spreadsheet format. + meaning: edam:format_3468 + title: xls + edam:format_3475: + text: edam:format_3475 + description: Tabular data represented as tab-separated values in a text file. + meaning: edam:format_3475 + title: TSV + edam:format_3477: + text: edam:format_3477 + description: Format of the cytoscape input file of gene expression ratios + or values are specified over one or more experiments. + meaning: edam:format_3477 + title: Cytoscape input file format + edam:format_3484: + text: edam:format_3484 + description: Bowtie format for indexed reference genome for "small" genomes. + meaning: edam:format_3484 + title: ebwt + edam:format_3485: + text: edam:format_3485 + description: Rich sequence format. + meaning: edam:format_3485 + title: RSF + edam:format_3486: + text: edam:format_3486 + description: Some format based on the GCG format. + meaning: edam:format_3486 + title: GCG format variant + edam:format_3487: + text: edam:format_3487 + description: Bioinformatics Sequence Markup Language format. + meaning: edam:format_3487 + title: BSML + edam:format_3491: + text: edam:format_3491 + description: Bowtie format for indexed reference genome for "large" genomes. + meaning: edam:format_3491 + title: ebwtl + edam:format_3499: + text: edam:format_3499 + description: Ensembl standard format for variation data. + meaning: edam:format_3499 + title: Ensembl variation file format + edam:format_3506: + text: edam:format_3506 + description: Microsoft Word format. + meaning: edam:format_3506 + title: docx + edam:format_3507: + text: edam:format_3507 + description: Format of documents including word processor, spreadsheet and + presentation. + meaning: edam:format_3507 + title: Document format + edam:format_3508: + text: edam:format_3508 + description: Portable Document Format. + meaning: edam:format_3508 + title: PDF + edam:format_3547: + text: edam:format_3547 + description: Format used for images and image metadata. + meaning: edam:format_3547 + title: Image format + edam:format_3548: + text: edam:format_3548 + description: Medical image format corresponding to the Digital Imaging and + Communications in Medicine (DICOM) standard. + meaning: edam:format_3548 + title: DICOM format + edam:format_3549: + text: edam:format_3549 + description: An open file format from the Neuroimaging Informatics Technology + Initiative (NIfTI) commonly used to store brain imaging data obtained using + Magnetic Resonance Imaging (MRI) methods. + meaning: edam:format_3549 + title: nii + edam:format_3550: + text: edam:format_3550 + description: Text-based tagged file format for medical images generated using + the MetaImage software package. + meaning: edam:format_3550 + title: mhd + edam:format_3551: + text: edam:format_3551 + description: Nearly Raw Rasta Data format designed to support scientific visualisation + and image processing involving N-dimensional raster data. + meaning: edam:format_3551 + title: nrrd + edam:format_3554: + text: edam:format_3554 + description: File format used for scripts written in the R programming language + for execution within the R software environment, typically for statistical + computation and graphics. + meaning: edam:format_3554 + title: R file format + edam:format_3555: + text: edam:format_3555 + description: File format used for scripts for the Statistical Package for + the Social Sciences. + meaning: edam:format_3555 + title: SPSS + edam:format_3556: + text: edam:format_3556 + description: MIME HTML format for Web pages, which can include external resources, + including images, Flash animations and so on. + meaning: edam:format_3556 + title: MHTML + edam:format_3578: + text: edam:format_3578 + description: Proprietary file format for (raw) BeadArray data used by genomewide + profiling platforms from Illumina Inc. This format is output directly from + the scanner and stores summary intensities for each probe-type on an array. + meaning: edam:format_3578 + title: IDAT + edam:format_3579: + text: edam:format_3579 + description: Joint Picture Group file format for lossy graphics file. + meaning: edam:format_3579 + title: JPG + edam:format_3580: + text: edam:format_3580 + description: Reporter Code Count-A data file (.csv) output by the Nanostring + nCounter Digital Analyzer, which contains gene sample information, probe + information and probe counts. + meaning: edam:format_3580 + title: rcc + edam:format_3581: + text: edam:format_3581 + description: ARFF (Attribute-Relation File Format) is an ASCII text file format + that describes a list of instances sharing a set of attributes. + meaning: edam:format_3581 + title: arff + edam:format_3582: + text: edam:format_3582 + description: AFG is a single text-based file assembly format that holds read + and consensus information together. + meaning: edam:format_3582 + title: afg + edam:format_3583: + text: edam:format_3583 + description: The bedGraph format allows display of continuous-valued data + in track format. This display type is useful for probability scores and + transcriptome data. + meaning: edam:format_3583 + title: bedgraph + edam:format_3584: + text: edam:format_3584 + description: Browser Extensible Data (BED) format of sequence annotation track + that strictly does not contain non-standard fields beyond the first 3 columns. + meaning: edam:format_3584 + title: bedstrict + edam:format_3585: + text: edam:format_3585 + description: BED file format where each feature is described by chromosome, + start, end, name, score, and strand. + meaning: edam:format_3585 + title: bed6 + edam:format_3586: + text: edam:format_3586 + description: A BED file where each feature is described by all twelve columns. + meaning: edam:format_3586 + title: bed12 + edam:format_3587: + text: edam:format_3587 + description: Tabular format of chromosome names and sizes used by Galaxy. + meaning: edam:format_3587 + title: chrominfo + edam:format_3588: + text: edam:format_3588 + description: Custom Sequence annotation track format used by Galaxy. + meaning: edam:format_3588 + title: customtrack + edam:format_3589: + text: edam:format_3589 + description: Color space FASTA format sequence variant. + meaning: edam:format_3589 + title: csfasta + edam:format_3590: + text: edam:format_3590 + description: HDF5 is a data model, library, and file format for storing and + managing data, based on Hierarchical Data Format (HDF). + meaning: edam:format_3590 + title: HDF5 + edam:format_3591: + text: edam:format_3591 + description: A versatile bitmap format. + meaning: edam:format_3591 + title: TIFF + edam:format_3592: + text: edam:format_3592 + description: Standard bitmap storage format in the Microsoft Windows environment. + meaning: edam:format_3592 + title: BMP + edam:format_3593: + text: edam:format_3593 + description: IM is a format used by LabEye and other applications based on + the IFUNC image processing library. + meaning: edam:format_3593 + title: im + edam:format_3594: + text: edam:format_3594 + description: Photo CD format, which is the highest resolution format for images + on a CD. + meaning: edam:format_3594 + title: pcd + edam:format_3595: + text: edam:format_3595 + description: PCX is an image file format that uses a simple form of run-length + encoding. It is lossless. + meaning: edam:format_3595 + title: pcx + edam:format_3596: + text: edam:format_3596 + description: The PPM format is a lowest common denominator color image file + format. + meaning: edam:format_3596 + title: ppm + edam:format_3597: + text: edam:format_3597 + description: PSD (Photoshop Document) is a proprietary file that allows the + user to work with the images' individual layers even after the file has + been saved. + meaning: edam:format_3597 + title: psd + edam:format_3598: + text: edam:format_3598 + description: X BitMap is a plain text binary image format used by the X Window + System used for storing cursor and icon bitmaps used in the X GUI. + meaning: edam:format_3598 + title: xbm + edam:format_3599: + text: edam:format_3599 + description: X PixMap (XPM) is an image file format used by the X Window System, + it is intended primarily for creating icon pixmaps, and supports transparent + pixels. + meaning: edam:format_3599 + title: xpm + edam:format_3600: + text: edam:format_3600 + description: RGB file format is the native raster graphics file format for + Silicon Graphics workstations. + meaning: edam:format_3600 + title: rgb + edam:format_3601: + text: edam:format_3601 + description: The PBM format is a lowest common denominator monochrome file + format. It serves as the common language of a large family of bitmap image + conversion filters. + meaning: edam:format_3601 + title: pbm + edam:format_3602: + text: edam:format_3602 + description: The PGM format is a lowest common denominator grayscale file + format. + meaning: edam:format_3602 + title: pgm + edam:format_3603: + text: edam:format_3603 + description: PNG is a file format for image compression. + meaning: edam:format_3603 + title: PNG + edam:format_3604: + text: edam:format_3604 + description: Scalable Vector Graphics (SVG) is an XML-based vector image format + for two-dimensional graphics with support for interactivity and animation. + meaning: edam:format_3604 + title: SVG + edam:format_3605: + text: edam:format_3605 + description: Sun Raster is a raster graphics file format used on SunOS by + Sun Microsystems. + meaning: edam:format_3605 + title: rast + edam:format_3606: + text: edam:format_3606 + description: Textual report format for sequence quality for reports from sequencing + machines. + meaning: edam:format_3606 + title: Sequence quality report format (text) + edam:format_3607: + text: edam:format_3607 + description: FASTQ format subset for Phred sequencing quality score data only + (no sequences). + meaning: edam:format_3607 + title: qual + edam:format_3608: + text: edam:format_3608 + description: FASTQ format subset for Phred sequencing quality score data only + (no sequences) for Solexa/Illumina 1.0 format. + meaning: edam:format_3608 + title: qualsolexa + edam:format_3609: + text: edam:format_3609 + description: FASTQ format subset for Phred sequencing quality score data only + (no sequences) from Illumina 1.5 and before Illumina 1.8. + meaning: edam:format_3609 + title: qualillumina + edam:format_3610: + text: edam:format_3610 + description: FASTQ format subset for Phred sequencing quality score data only + (no sequences) for SOLiD data. + meaning: edam:format_3610 + title: qualsolid + edam:format_3611: + text: edam:format_3611 + description: FASTQ format subset for Phred sequencing quality score data only + (no sequences) from 454 sequencers. + meaning: edam:format_3611 + title: qual454 + edam:format_3612: + text: edam:format_3612 + description: Human ENCODE peak format. + meaning: edam:format_3612 + title: ENCODE peak format + edam:format_3613: + text: edam:format_3613 + description: Human ENCODE narrow peak format. + meaning: edam:format_3613 + title: ENCODE narrow peak format + edam:format_3614: + text: edam:format_3614 + description: Human ENCODE broad peak format. + meaning: edam:format_3614 + title: ENCODE broad peak format + edam:format_3615: + text: edam:format_3615 + description: Blocked GNU Zip format. + meaning: edam:format_3615 + title: bgzip + edam:format_3616: + text: edam:format_3616 + description: TAB-delimited genome position file index format. + meaning: edam:format_3616 + title: tabix + edam:format_3617: + text: edam:format_3617 + description: Data format for graph data. + meaning: edam:format_3617 + title: Graph format + edam:format_3618: + text: edam:format_3618 + description: XML-based format used to store graph descriptions within Galaxy. + meaning: edam:format_3618 + title: xgmml + edam:format_3619: + text: edam:format_3619 + description: SIF (simple interaction file) Format - a network/pathway format + used for instance in cytoscape. + meaning: edam:format_3619 + title: sif + edam:format_3620: + text: edam:format_3620 + description: MS Excel spreadsheet format consisting of a set of XML documents + stored in a ZIP-compressed file. + meaning: edam:format_3620 + title: xlsx + edam:format_3621: + text: edam:format_3621 + description: Data format used by the SQLite database. + meaning: edam:format_3621 + title: SQLite format + edam:format_3622: + text: edam:format_3622 + description: Data format used by the SQLite database conformant to the Gemini + schema. + meaning: edam:format_3622 + title: Gemini SQLite format + edam:format_3624: + text: edam:format_3624 + description: An index of a genome database, indexed for use by the snpeff + tool. + meaning: edam:format_3624 + title: snpeffdb + edam:format_3626: + text: edam:format_3626 + description: Binary format used by MATLAB files to store workspace variables. + meaning: edam:format_3626 + title: MAT + edam:format_3650: + text: edam:format_3650 + description: Format used by netCDF software library for writing and reading + chromatography-MS data files. Also used to store trajectory atom coordinates + information, such as the ones obtained by Molecular Dynamics simulations. + meaning: edam:format_3650 + title: NetCDF + edam:format_3651: + text: edam:format_3651 + description: Mascot Generic Format. Encodes multiple MS/MS spectra in a single + file. + meaning: edam:format_3651 + title: MGF + edam:format_3652: + text: edam:format_3652 + description: Spectral data format file where each spectrum is written to a + separate file. + meaning: edam:format_3652 + title: dta + edam:format_3653: + text: edam:format_3653 + description: Spectral data file similar to dta. + meaning: edam:format_3653 + title: pkl + edam:format_3654: + text: edam:format_3654 + description: Common file format for proteomics mass spectrometric data developed + at the Seattle Proteome Center/Institute for Systems Biology. + meaning: edam:format_3654 + title: mzXML + edam:format_3655: + text: edam:format_3655 + description: Open data format for the storage, exchange, and processing of + peptide sequence assignments of MS/MS scans, intended to provide a common + data output format for many different MS/MS search engines and subsequent + peptide-level analyses. + meaning: edam:format_3655 + title: pepXML + edam:format_3657: + text: edam:format_3657 + description: Graphical Pathway Markup Language (GPML) is an XML format used + for exchanging biological pathways. + meaning: edam:format_3657 + title: GPML + edam:format_3665: + text: edam:format_3665 + description: A list of k-mers and their occurrences in a dataset. Can also + be used as an implicit De Bruijn graph. + meaning: edam:format_3665 + title: K-mer countgraph + edam:format_3681: + text: edam:format_3681 + description: mzTab is a light-weight, tab-delimited format for mass spectrometry-based + proteomics data. + meaning: edam:format_3681 + title: mzTab + edam:format_3682: + text: edam:format_3682 + description: imzML metadata is a data format for mass spectrometry imaging + metadata. + meaning: edam:format_3682 + title: imzML metadata file + edam:format_3683: + text: edam:format_3683 + description: qcML is an XML format for quality-related data of mass spectrometry + and other high-throughput measurements. + meaning: edam:format_3683 + title: qcML + edam:format_3684: + text: edam:format_3684 + description: PRIDE XML is an XML format for mass spectra, peptide and protein + identifications, and metadata about a corresponding measurement, sample, + experiment. + meaning: edam:format_3684 + title: PRIDE XML + edam:format_3685: + text: edam:format_3685 + description: Simulation Experiment Description Markup Language (SED-ML) is + an XML format for encoding simulation setups, according to the MIASE (Minimum + Information About a Simulation Experiment) requirements. + meaning: edam:format_3685 + title: SED-ML + edam:format_3686: + text: edam:format_3686 + description: Open Modeling EXchange format (OMEX) is a ZIPped format for encapsulating + all information necessary for a modeling and simulation project in systems + biology. + meaning: edam:format_3686 + title: COMBINE OMEX + edam:format_3687: + text: edam:format_3687 + description: ISA-Tab stands for Investigation / Study / Assay (ISA) tab-delimited + (Tab) format, and it is comprised of metadata describing observational or + experimental scientific studies. + meaning: edam:format_3687 + title: ISA-Tab + edam:format_3688: + text: edam:format_3688 + description: SBtab is a tabular format for biochemical network models. + meaning: edam:format_3688 + title: SBtab + edam:format_3689: + text: edam:format_3689 + description: Biological Connection Markup Language (BCML) is an XML format + for biological pathways. + meaning: edam:format_3689 + title: BCML + edam:format_3690: + text: edam:format_3690 + description: Biological Dynamics Markup Language (BDML) is an XML format for + quantitative data describing biological dynamics. + meaning: edam:format_3690 + title: BDML + edam:format_3691: + text: edam:format_3691 + description: Biological Expression Language (BEL) is a textual format for + representing scientific findings in life sciences in a computable form. + meaning: edam:format_3691 + title: BEL + edam:format_3692: + text: edam:format_3692 + description: SBGN-ML is an XML format for Systems Biology Graphical Notation + (SBGN) diagrams of biological pathways or networks. + meaning: edam:format_3692 + title: SBGN-ML + edam:format_3693: + text: edam:format_3693 + description: AGP is a tabular format for a sequence assembly (a contig, a + scaffold/supercontig, or a chromosome). + meaning: edam:format_3693 + title: AGP + edam:format_3696: + text: edam:format_3696 + description: PostScript format. + meaning: edam:format_3696 + title: PS + edam:format_3698: + text: edam:format_3698 + description: SRA archive format (SRA) is the archive format used for input + to the NCBI Sequence Read Archive. + meaning: edam:format_3698 + title: SRA format + edam:format_3699: + text: edam:format_3699 + description: VDB ('vertical database') is the native format used for export + from the NCBI Sequence Read Archive. + meaning: edam:format_3699 + title: VDB + edam:format_3701: + text: edam:format_3701 + description: A five-column, tab-delimited table of feature locations and qualifiers + for importing annotation into an existing Sequin submission (an NCBI tool + for submitting and updating GenBank entries). + meaning: edam:format_3701 + title: Sequin format + edam:format_3702: + text: edam:format_3702 + description: Proprietary mass-spectrometry format of Thermo Scientific's ProteomeDiscoverer + software. + meaning: edam:format_3702 + title: MSF + edam:format_3706: + text: edam:format_3706 + description: Data format for biodiversity data. + meaning: edam:format_3706 + title: Biodiversity data format + edam:format_3708: + text: edam:format_3708 + description: Exchange format of the Access to Biological Collections Data + (ABCD) Schema; a standard for the access to and exchange of data about specimens + and observations (primary biodiversity data). + meaning: edam:format_3708 + title: ABCD format + edam:format_3709: + text: edam:format_3709 + description: Tab-delimited text files of GenePattern that contain a column + for each sample, a row for each gene, and an expression value for each gene + in each sample. + meaning: edam:format_3709 + title: GCT/Res format + edam:format_3710: + text: edam:format_3710 + description: Mass spectrum file format from QSTAR and QTRAP instruments (ABI/Sciex). + meaning: edam:format_3710 + title: WIFF format + edam:format_3711: + text: edam:format_3711 + description: Output format used by X! series search engines that is based + on the XML language BIOML. + meaning: edam:format_3711 + title: X!Tandem XML + edam:format_3712: + text: edam:format_3712 + description: Proprietary file format for mass spectrometry data from Thermo + Scientific. + meaning: edam:format_3712 + title: Thermo RAW + edam:format_3713: + text: edam:format_3713 + description: '"Raw" result file from Mascot database search.' + meaning: edam:format_3713 + title: Mascot .dat file + edam:format_3714: + text: edam:format_3714 + description: Format of peak list files from Andromeda search engine (MaxQuant) + that consist of arbitrarily many spectra. + meaning: edam:format_3714 + title: MaxQuant APL peaklist format + edam:format_3725: + text: edam:format_3725 + description: Synthetic Biology Open Language (SBOL) is an XML format for the + specification and exchange of biological design information in synthetic + biology. + meaning: edam:format_3725 + title: SBOL + edam:format_3726: + text: edam:format_3726 + description: PMML uses XML to represent mining models. The structure of the + models is described by an XML Schema. + meaning: edam:format_3726 + title: PMML + edam:format_3727: + text: edam:format_3727 + description: Image file format used by the Open Microscopy Environment (OME). + meaning: edam:format_3727 + title: OME-TIFF + edam:format_3728: + text: edam:format_3728 + description: The LocARNA PP format combines sequence or alignment information + and (respectively, single or consensus) ensemble probabilities into an PP + 2.0 record. + meaning: edam:format_3728 + title: LocARNA PP + edam:format_3729: + text: edam:format_3729 + description: Input format used by the Database of Genotypes and Phenotypes + (dbGaP). + meaning: edam:format_3729 + title: dbGaP format + edam:format_3746: + text: edam:format_3746 + description: The BIological Observation Matrix (BIOM) is a format for representing + biological sample by observation contingency tables in broad areas of comparative + omics. The primary use of this format is to represent OTU tables and metagenome + tables. + meaning: edam:format_3746 + title: BIOM format + edam:format_3747: + text: edam:format_3747 + description: A format for storage, exchange, and processing of protein identifications + created from ms/ms-derived peptide sequence data. + meaning: edam:format_3747 + title: protXML + edam:format_3748: + text: edam:format_3748 + description: A linked data format enables publishing structured data as linked + data (Linked Data), so that the data can be interlinked and become more + useful through semantic queries. + meaning: edam:format_3748 + title: Linked data format + edam:format_3749: + text: edam:format_3749 + description: JSON-LD, or JavaScript Object Notation for Linked Data, is a + method of encoding Linked Data using JSON. + meaning: edam:format_3749 + title: JSON-LD + edam:format_3750: + text: edam:format_3750 + description: YAML (YAML Ain't Markup Language) is a human-readable tree-structured + data serialisation language. + meaning: edam:format_3750 + title: YAML + edam:format_3751: + text: edam:format_3751 + description: Tabular data represented as values in a text file delimited by + some character. + meaning: edam:format_3751 + title: DSV + edam:format_3752: + text: edam:format_3752 + description: Tabular data represented as comma-separated values in a text + file. + meaning: edam:format_3752 + title: CSV + edam:format_3758: + text: edam:format_3758 + description: '"Raw" result file from SEQUEST database search.' + meaning: edam:format_3758 + title: SEQUEST .out file + edam:format_3764: + text: edam:format_3764 + description: XML file format for files containing information about peptide + identifications from mass spectrometry data analysis carried out with OpenMS. + meaning: edam:format_3764 + title: idXML + edam:format_3765: + text: edam:format_3765 + description: Data table formatted such that it can be passed/streamed within + the KNIME platform. + meaning: edam:format_3765 + title: KNIME datatable format + edam:format_3770: + text: edam:format_3770 + description: UniProtKB XML sequence features format is an XML format available + for downloading UniProt entries. + meaning: edam:format_3770 + title: UniProtKB XML + edam:format_3771: + text: edam:format_3771 + description: UniProtKB RDF sequence features format is an RDF format available + for downloading UniProt entries (in RDF/XML). + meaning: edam:format_3771 + title: UniProtKB RDF + edam:format_3772: + text: edam:format_3772 + description: BioJSON is a BioXSD-schema-based JSON format of sequence-based + data and some other common data - sequence records, alignments, feature + records, references to resources, and more - optimised for integrative bioinformatics, + web applications and APIs, and object-oriented programming. + meaning: edam:format_3772 + title: BioJSON (BioXSD) + edam:format_3773: + text: edam:format_3773 + description: BioYAML is a BioXSD-schema-based YAML format of sequence-based + data and some other common data - sequence records, alignments, feature + records, references to resources, and more - optimised for integrative bioinformatics, + web APIs, human readability and editing, and object-oriented programming. + meaning: edam:format_3773 + title: BioYAML + edam:format_3774: + text: edam:format_3774 + description: BioJSON is a JSON format of single multiple sequence alignments, + with their annotations, features, and custom visualisation and application + settings for the Jalview workbench. + meaning: edam:format_3774 + title: BioJSON (Jalview) + edam:format_3775: + text: edam:format_3775 + description: GSuite is a tabular format for collections of genome or sequence + feature tracks, suitable for integrative multi-track analysis. GSuite contains + links to genome/sequence tracks, with additional metadata. + meaning: edam:format_3775 + title: GSuite + edam:format_3776: + text: edam:format_3776 + description: BTrack is an HDF5-based binary format for genome or sequence + feature tracks and their collections, suitable for integrative multi-track + analysis. BTrack is a binary, compressed alternative to the GTrack and GSuite + formats. + meaning: edam:format_3776 + title: BTrack + edam:format_3777: + text: edam:format_3777 + description: The FAO/Bioversity/IPGRI Multi-Crop Passport Descriptors (MCPD) + is an international standard format for exchange of germplasm information. + meaning: edam:format_3777 + title: MCPD + edam:format_3780: + text: edam:format_3780 + description: Data format of an annotated text, e.g. with recognised entities, + concepts, and relations. + meaning: edam:format_3780 + title: Annotated text format + edam:format_3781: + text: edam:format_3781 + description: JSON format of annotated scientific text used by PubAnnotations + and other tools. + meaning: edam:format_3781 + title: PubAnnotation format + edam:format_3782: + text: edam:format_3782 + description: BioC is a standardised XML format for sharing and integrating + text data and annotations. + meaning: edam:format_3782 + title: BioC + edam:format_3783: + text: edam:format_3783 + description: Native textual export format of annotated scientific text from + PubTator. + meaning: edam:format_3783 + title: PubTator format + edam:format_3784: + text: edam:format_3784 + description: A format of text annotation using the linked-data Open Annotation + Data Model, serialised typically in RDF or JSON-LD. + meaning: edam:format_3784 + title: Open Annotation format + edam:format_3785: + text: edam:format_3785 + description: A family of similar formats of text annotation, used by BRAT + and other tools, known as BioNLP Shared Task format (BioNLP 2009 Shared + Task on Event Extraction, BioNLP Shared Task 2011, BioNLP Shared Task 2013), + BRAT format, BRAT standoff format, and similar. + meaning: edam:format_3785 + title: BioNLP Shared Task format + edam:format_3787: + text: edam:format_3787 + description: A query language (format) for structured database queries. + meaning: edam:format_3787 + title: Query language + edam:format_3788: + text: edam:format_3788 + description: SQL (Structured Query Language) is the de-facto standard query + language (format of queries) for querying and manipulating data in relational + databases. + meaning: edam:format_3788 + title: SQL + edam:format_3789: + text: edam:format_3789 + description: XQuery (XML Query) is a query language (format of queries) for + querying and manipulating structured and unstructured data, usually in the + form of XML, text, and with vendor-specific extensions for other data formats + (JSON, binary, etc.). + meaning: edam:format_3789 + title: XQuery + edam:format_3790: + text: edam:format_3790 + description: SPARQL (SPARQL Protocol and RDF Query Language) is a semantic + query language for querying and manipulating data stored in Resource Description + Framework (RDF) format. + meaning: edam:format_3790 + title: SPARQL + edam:format_3804: + text: edam:format_3804 + description: XML format for XML Schema. + meaning: edam:format_3804 + title: xsd + edam:format_3811: + text: edam:format_3811 + description: XMFA format stands for eXtended Multi-FastA format and is used + to store collinear sub-alignments that constitute a single genome alignment. + meaning: edam:format_3811 + title: XMFA + edam:format_3812: + text: edam:format_3812 + description: The GEN file format contains genetic data and describes SNPs. + meaning: edam:format_3812 + title: GEN + edam:format_3813: + text: edam:format_3813 + description: The SAMPLE file format contains information about each individual + i.e. individual IDs, covariates, phenotypes and missing data proportions, + from a GWAS study. + meaning: edam:format_3813 + title: SAMPLE file format + edam:format_3814: + text: edam:format_3814 + description: SDF is one of a family of chemical-data file formats developed + by MDL Information Systems; it is intended especially for structural information. + meaning: edam:format_3814 + title: SDF + edam:format_3815: + text: edam:format_3815 + description: An MDL Molfile is a file format for holding information about + the atoms, bonds, connectivity and coordinates of a molecule. + meaning: edam:format_3815 + title: Molfile + edam:format_3816: + text: edam:format_3816 + description: Complete, portable representation of a SYBYL molecule. ASCII + file which contains all the information needed to reconstruct a SYBYL molecule. + meaning: edam:format_3816 + title: Mol2 + edam:format_3817: + text: edam:format_3817 + description: format for the LaTeX document preparation system. + meaning: edam:format_3817 + title: latex + edam:format_3818: + text: edam:format_3818 + description: Tab-delimited text file format used by Eland - the read-mapping + program distributed by Illumina with its sequencing analysis pipeline - + which maps short Solexa sequence reads to the human reference genome. + meaning: edam:format_3818 + title: ELAND format + edam:format_3819: + text: edam:format_3819 + description: Phylip multiple alignment sequence format, less stringent than + PHYLIP format. + meaning: edam:format_3819 + title: Relaxed PHYLIP Interleaved + edam:format_3820: + text: edam:format_3820 + description: Phylip multiple alignment sequence format, less stringent than + PHYLIP sequential format (format_1998). + meaning: edam:format_3820 + title: Relaxed PHYLIP Sequential + edam:format_3821: + text: edam:format_3821 + description: Default XML format of VisANT, containing all the network information. + meaning: edam:format_3821 + title: VisML + edam:format_3822: + text: edam:format_3822 + description: GML (Graph Modeling Language) is a text file format supporting + network data with a very easy syntax. It is used by Graphlet, Pajek, yEd, + LEDA and NetworkX. + meaning: edam:format_3822 + title: GML + edam:format_3823: + text: edam:format_3823 + description: FASTG is a format for faithfully representing genome assemblies + in the face of allelic polymorphism and assembly uncertainty. + meaning: edam:format_3823 + title: FASTG + edam:format_3824: + text: edam:format_3824 + description: Data format for raw data from a nuclear magnetic resonance (NMR) + spectroscopy experiment. + meaning: edam:format_3824 + title: NMR data format + edam:format_3825: + text: edam:format_3825 + description: nmrML is an MSI supported XML-based open access format for metabolomics + NMR raw and processed spectral data. It is accompanies by an nmrCV (controlled + vocabulary) to allow ontology-based annotations. + meaning: edam:format_3825 + title: nmrML + edam:format_3826: + text: edam:format_3826 + description: . proBAM is an adaptation of BAM (format_2572), which was extended + to meet specific requirements entailed by proteomics data. + meaning: edam:format_3826 + title: proBAM + edam:format_3827: + text: edam:format_3827 + description: . proBED is an adaptation of BED (format_3003), which was extended + to meet specific requirements entailed by proteomics data. + meaning: edam:format_3827 + title: proBED + edam:format_3828: + text: edam:format_3828 + description: Data format for raw microarray data. + meaning: edam:format_3828 + title: Raw microarray data format + edam:format_3829: + text: edam:format_3829 + description: GenePix Results (GPR) text file format developed by Axon Instruments + that is used to save GenePix Results data. + meaning: edam:format_3829 + title: GPR + edam:format_3830: + text: edam:format_3830 + description: Binary format used by the ARB software suite. + meaning: edam:format_3830 + title: ARB + edam:format_3832: + text: edam:format_3832 + description: OpenMS format for grouping features in one map or across several + maps. + meaning: edam:format_3832 + title: consensusXML + edam:format_3833: + text: edam:format_3833 + description: OpenMS format for quantitation results (LC/MS features). + meaning: edam:format_3833 + title: featureXML + edam:format_3834: + text: edam:format_3834 + description: Now deprecated data format of the HUPO Proteomics Standards Initiative. + Replaced by mzML (format_3244). + meaning: edam:format_3834 + title: mzData + edam:format_3835: + text: edam:format_3835 + description: Format supported by the Tide tool for identifying peptides from + tandem mass spectra. + meaning: edam:format_3835 + title: TIDE TXT + edam:format_3836: + text: edam:format_3836 + description: XML format as produced by the NCBI Blast package v2. + meaning: edam:format_3836 + title: BLAST XML v2 results format + edam:format_3838: + text: edam:format_3838 + description: Microsoft Powerpoint format. + meaning: edam:format_3838 + title: pptx + edam:format_3839: + text: edam:format_3839 + description: ibd is a data format for mass spectrometry imaging data. + meaning: edam:format_3839 + title: ibd + edam:format_3841: + text: edam:format_3841 + description: Data format used in Natural Language Processing. + meaning: edam:format_3841 + title: NLP format + edam:format_3843: + text: edam:format_3843 + description: XML input file format for BEAST Software (Bayesian Evolutionary + Analysis Sampling Trees). + meaning: edam:format_3843 + title: BEAST + edam:format_3844: + text: edam:format_3844 + description: Chado-XML format is a direct mapping of the Chado relational + schema into XML. + meaning: edam:format_3844 + title: Chado-XML + edam:format_3845: + text: edam:format_3845 + description: 'An alignment format generated by PRANK/PRANKSTER consisting + of four elements: newick, nodes, selection and model.' + meaning: edam:format_3845 + title: HSAML + edam:format_3846: + text: edam:format_3846 + description: Output xml file from the InterProScan sequence analysis application. + meaning: edam:format_3846 + title: InterProScan XML + edam:format_3847: + text: edam:format_3847 + description: The KEGG Markup Language (KGML) is an exchange format of the + KEGG pathway maps, which is converted from internally used KGML+ (KGML+SVG) + format. + meaning: edam:format_3847 + title: KGML + edam:format_3848: + text: edam:format_3848 + description: XML format for collected entries from bibliographic databases + MEDLINE and PubMed. + meaning: edam:format_3848 + title: PubMed XML + edam:format_3849: + text: edam:format_3849 + description: A set of XML compliant markup components for describing multiple + sequence alignments. + meaning: edam:format_3849 + title: MSAML + edam:format_3850: + text: edam:format_3850 + description: OrthoXML is designed broadly to allow the storage and comparison + of orthology data from any ortholog database. It establishes a structure + for describing orthology relationships while still allowing flexibility + for database-specific information to be encapsulated in the same format. + meaning: edam:format_3850 + title: OrthoXML + edam:format_3851: + text: edam:format_3851 + description: Tree structure of Protein Sequence Database Markup Language generated + using Matra software. + meaning: edam:format_3851 + title: PSDML + edam:format_3852: + text: edam:format_3852 + description: SeqXML is an XML Schema to describe biological sequences, developed + by the Stockholm Bioinformatics Centre. + meaning: edam:format_3852 + title: SeqXML + edam:format_3853: + text: edam:format_3853 + description: XML format for the UniParc database. + meaning: edam:format_3853 + title: UniParc XML + edam:format_3854: + text: edam:format_3854 + description: XML format for the UniRef reference clusters. + meaning: edam:format_3854 + title: UniRef XML + edam:format_3857: + text: edam:format_3857 + description: Common Workflow Language (CWL) format for description of command-line + tools and workflows. + meaning: edam:format_3857 + title: CWL + edam:format_3858: + text: edam:format_3858 + description: Proprietary file format for mass spectrometry data from Waters. + meaning: edam:format_3858 + title: Waters RAW + edam:format_3859: + text: edam:format_3859 + description: A standardized file format for data exchange in mass spectrometry, + initially developed for infrared spectrometry. + meaning: edam:format_3859 + title: JCAMP-DX + edam:format_3862: + text: edam:format_3862 + description: An NLP format used for annotated textual documents. + meaning: edam:format_3862 + title: NLP annotation format + edam:format_3863: + text: edam:format_3863 + description: NLP format used by a specific type of corpus (collection of texts). + meaning: edam:format_3863 + title: NLP corpus format + edam:format_3864: + text: edam:format_3864 + description: mirGFF3 is a common format for microRNA data resulting from small-RNA + RNA-Seq workflows. + meaning: edam:format_3864 + title: mirGFF3 + edam:format_3865: + text: edam:format_3865 + description: A "placeholder" concept for formats of annotated RNA data, including + e.g. microRNA and RNA-Seq data. + meaning: edam:format_3865 + title: RNA annotation format + edam:format_3866: + text: edam:format_3866 + description: File format to store trajectory information for a 3D structure + . + meaning: edam:format_3866 + title: Trajectory format + edam:format_3867: + text: edam:format_3867 + description: Binary file format to store trajectory information for a 3D structure + . + meaning: edam:format_3867 + title: Trajectory format (binary) + edam:format_3868: + text: edam:format_3868 + description: Textual file format to store trajectory information for a 3D + structure . + meaning: edam:format_3868 + title: Trajectory format (text) + edam:format_3873: + text: edam:format_3873 + description: HDF is the name of a set of file formats and libraries designed + to store and organize large amounts of numerical data, originally developed + at the National Center for Supercomputing Applications at the University + of Illinois. + meaning: edam:format_3873 + title: HDF + edam:format_3874: + text: edam:format_3874 + description: PCAZip format is a binary compressed file to store atom coordinates + based on Essential Dynamics (ED) and Principal Component Analysis (PCA). + meaning: edam:format_3874 + title: PCAzip + edam:format_3875: + text: edam:format_3875 + description: Portable binary format for trajectories produced by GROMACS package. + meaning: edam:format_3875 + title: XTC + edam:format_3876: + text: edam:format_3876 + description: Trajectory Next Generation (TNG) is a format for storage of molecular + simulation data. It is designed and implemented by the GROMACS development + group, and it is called to be the substitute of the XTC format. + meaning: edam:format_3876 + title: TNG + edam:format_3877: + text: edam:format_3877 + description: The XYZ chemical file format is widely supported by many programs, + although many slightly different XYZ file formats coexist (Tinker XYZ, UniChem + XYZ, etc.). Basic information stored for each atom in the system are x, + y and z coordinates and atom element/atomic number. + meaning: edam:format_3877 + title: XYZ + edam:format_3878: + text: edam:format_3878 + description: AMBER trajectory (also called mdcrd), with 10 coordinates per + line and format F8.3 (fixed point notation with field width 8 and 3 decimal + places). + meaning: edam:format_3878 + title: mdcrd + edam:format_3879: + text: edam:format_3879 + description: Format of topology files; containing the static information of + a structure molecular system that is needed for a molecular simulation. + meaning: edam:format_3879 + title: Topology format + edam:format_3880: + text: edam:format_3880 + description: GROMACS MD package top textual files define an entire structure + system topology, either directly, or by including itp files. + meaning: edam:format_3880 + title: GROMACS top + edam:format_3881: + text: edam:format_3881 + description: AMBER Prmtop file (version 7) is a structure topology text file + divided in several sections designed to be parsed easily using simple Fortran + code. Each section contains particular topology information, such as atom + name, charge, mass, angles, dihedrals, etc. + meaning: edam:format_3881 + title: AMBER top + edam:format_3882: + text: edam:format_3882 + description: 'X-Plor Protein Structure Files (PSF) are structure topology + files used by NAMD and CHARMM molecular simulations programs. PSF files + contain six main sections of interest: atoms, bonds, angles, dihedrals, + improper dihedrals (force terms used to maintain planarity) and cross-terms.' + meaning: edam:format_3882 + title: PSF + edam:format_3883: + text: edam:format_3883 + description: GROMACS itp files (include topology) contain structure topology + information, and are typically included in GROMACS topology files (GROMACS + top). Itp files are used to define individual (or multiple) components of + a topology as a separate file. This is particularly useful if there is a + molecule that is used frequently, and also reduces the size of the system + topology file, splitting it in different parts. + meaning: edam:format_3883 + title: GROMACS itp + edam:format_3884: + text: edam:format_3884 + description: Format of force field parameter files, which store the set of + parameters (charges, masses, radii, bond lengths, bond dihedrals, etc.) + that are essential for the proper description and simulation of a molecular + system. + meaning: edam:format_3884 + title: FF parameter format + edam:format_3885: + text: edam:format_3885 + description: Scripps Research Institute BinPos format is a binary formatted + file to store atom coordinates. + meaning: edam:format_3885 + title: BinPos + edam:format_3886: + text: edam:format_3886 + description: AMBER coordinate/restart file with 6 coordinates per line and + decimal format F12.7 (fixed point notation with field width 12 and 7 decimal + places). + meaning: edam:format_3886 + title: RST + edam:format_3887: + text: edam:format_3887 + description: Format of CHARMM Residue Topology Files (RTF), which define groups + by including the atoms, the properties of the group, and bond and charge + information. + meaning: edam:format_3887 + title: CHARMM rtf + edam:format_3888: + text: edam:format_3888 + description: AMBER frcmod (Force field Modification) is a file format to store + any modification to the standard force field needed for a particular molecule + to be properly represented in the simulation. + meaning: edam:format_3888 + title: AMBER frcmod + edam:format_3889: + text: edam:format_3889 + description: AMBER Object File Format library files (OFF library files) store + residue libraries (forcefield residue parameters). + meaning: edam:format_3889 + title: AMBER off + edam:format_3906: + text: edam:format_3906 + description: 'MReData is a text based data standard for processed NMR data. + It is relying on SDF molecule data and allows to store assignments of NMR + peaks to molecule features. The NMR-extracted data (or "NMReDATA") includes: + Chemical shift,scalar coupling, 2D correlation, assignment, etc.' + meaning: edam:format_3906 + title: NMReDATA + edam:format_3909: + text: edam:format_3909 + description: BpForms is a string format for concretely representing the primary + structures of biopolymers, including DNA, RNA, and proteins that include + non-canonical nucleic and amino acids. See https://www.bpforms.org for more + information. + meaning: edam:format_3909 + title: BpForms + edam:format_3910: + text: edam:format_3910 + description: Format of trr files that contain the trajectory of a simulation + experiment used by GROMACS. + meaning: edam:format_3910 + title: trr + edam:format_3911: + text: edam:format_3911 + description: Mash sketch is a format for sequence / sequence checksum information. + To make a sketch, each k-mer in a sequence is hashed, which creates a pseudo-random + identifier. By sorting these hashes, a small subset from the top of the + sorted list can represent the entire sequence. + meaning: edam:format_3911 + title: msh + edam:format_3913: + text: edam:format_3913 + description: The Loom file format is based on HDF5, a standard for storing + large numerical datasets. The Loom format is designed to efficiently hold + large omics datasets. Typically, such data takes the form of a large matrix + of numbers, along with metadata for the rows and columns. + meaning: edam:format_3913 + title: Loom + edam:format_3915: + text: edam:format_3915 + description: The Zarr format is an implementation of chunked, compressed, + N-dimensional arrays for storing data. + meaning: edam:format_3915 + title: Zarr + edam:format_3916: + text: edam:format_3916 + description: The Matrix Market matrix (MTX) format stores numerical or pattern + matrices in a dense (array format) or sparse (coordinate format) representation. + meaning: edam:format_3916 + title: MTX + edam:format_3951: + text: edam:format_3951 + description: BcForms is a format for abstractly describing the molecular structure + (atoms and bonds) of macromolecular complexes as a collection of subunits + and crosslinks. Each subunit can be described with BpForms (http://edamontology.org/format_3909) + or SMILES (http://edamontology.org/data_2301). BcForms uses an ontology + of crosslinks to abstract the chemical details of crosslinks from the descriptions + of complexes (see https://bpforms.org/crosslink.html). + meaning: edam:format_3951 + title: BcForms + edam:format_3956: + text: edam:format_3956 + description: N-Quads is a line-based, plain text format for encoding an RDF + dataset. It includes information about the graph each triple belongs to. + meaning: edam:format_3956 + title: N-Quads + edam:format_3969: + text: edam:format_3969 + description: Vega is a visualization grammar, a declarative language for creating, + saving, and sharing interactive visualization designs. With Vega, you can + describe the visual appearance and interactive behavior of a visualization + in a JSON format, and generate web-based views using Canvas or SVG. + meaning: edam:format_3969 + title: Vega + edam:format_3970: + text: edam:format_3970 + description: Vega-Lite is a high-level grammar of interactive graphics. It + provides a concise JSON syntax for rapidly generating visualizations to + support analysis. Vega-Lite specifications can be compiled to Vega specifications. + meaning: edam:format_3970 + title: Vega-lite + edam:format_3971: + text: edam:format_3971 + description: A model description language for computational neuroscience. + meaning: edam:format_3971 + title: NeuroML + edam:format_3972: + text: edam:format_3972 + description: BioNetGen is a format for the specification and simulation of + rule-based models of biochemical systems, including signal transduction, + metabolic, and genetic regulatory networks. + meaning: edam:format_3972 + title: BNGL + edam:format_3973: + text: edam:format_3973 + description: A Docker image is a file, comprised of multiple layers, that + is used to execute code in a Docker container. An image is essentially built + from the instructions for a complete and executable version of an application, + which relies on the host OS kernel. + meaning: edam:format_3973 + title: Docker image + edam:format_3975: + text: edam:format_3975 + description: Graphical Fragment Assembly captures sequence graphs as the product + of an assembly, a representation of variation in genomes, splice graphs + in genes, or even overlap between reads from long-read sequencing technology. + meaning: edam:format_3975 + title: GFA 1 + edam:format_3976: + text: edam:format_3976 + description: Graphical Fragment Assembly captures sequence graphs as the product + of an assembly, a representation of variation in genomes, splice graphs + in genes, or even overlap between reads from long-read sequencing technology. + GFA2 is an update of GFA1 which is not compatible with GFA1. + meaning: edam:format_3976 + title: GFA 2 + edam:format_3977: + text: edam:format_3977 + description: ObjTables is a toolkit for creating reusable datasets that are + both human and machine-readable, combining the ease of spreadsheets (e.g., + Excel workbooks) with the rigor of schemas (classes, their attributes, the + type of each attribute, and the possible relationships between instances + of classes). ObjTables consists of a format for describing schemas for spreadsheets, + numerous data types for science, a syntax for indicating the class and attribute + represented by each table and column in a workbook, and software for using + schemas to rigorously validate, merge, split, compare, and revision datasets. + meaning: edam:format_3977 + title: ObjTables + edam:format_3978: + text: edam:format_3978 + description: The CONTIG format used for output of the SOAPdenovo alignment + program. It contains contig sequences generated without using mate pair + information. + meaning: edam:format_3978 + title: CONTIG + edam:format_3979: + text: edam:format_3979 + description: WEGO native format used by the Web Gene Ontology Annotation Plot + application. Tab-delimited format with gene names and others GO IDs (columns) + with one annotation record per line. + meaning: edam:format_3979 + title: WEGO + edam:format_3980: + text: edam:format_3980 + description: Tab-delimited format for gene expression levels table, calculated + as Reads Per Kilobase per Million (RPKM) mapped reads. + meaning: edam:format_3980 + title: RPKM + edam:format_3981: + text: edam:format_3981 + description: TAR archive file format generated by the Unix-based utility tar. + meaning: edam:format_3981 + title: TAR format + edam:format_3982: + text: edam:format_3982 + description: The CHAIN format describes a pairwise alignment that allow gaps + in both sequences simultaneously and is used by the UCSC Genome Browser. + meaning: edam:format_3982 + title: CHAIN + edam:format_3983: + text: edam:format_3983 + description: The NET file format is used to describe the data that underlie + the net alignment annotations in the UCSC Genome Browser. + meaning: edam:format_3983 + title: NET + edam:format_3984: + text: edam:format_3984 + description: Format of QMAP files generated for methylation data from an internal + BGI pipeline. + meaning: edam:format_3984 + title: QMAP + edam:format_3985: + text: edam:format_3985 + description: An emerging format for high-level Galaxy workflow description. + meaning: edam:format_3985 + title: gxformat2 + edam:format_3986: + text: edam:format_3986 + description: The proprietary native video format of various Microsoft programs + such as Windows Media Player. + meaning: edam:format_3986 + title: WMV + edam:format_3987: + text: edam:format_3987 + description: ZIP is an archive file format that supports lossless data compression. + meaning: edam:format_3987 + title: ZIP format + edam:format_3988: + text: edam:format_3988 + description: Zeiss' proprietary image format based on TIFF. + meaning: edam:format_3988 + title: LSM + edam:format_3989: + text: edam:format_3989 + description: GNU zip compressed file format common to Unix-based operating + systems. + meaning: edam:format_3989 + title: GZIP format + edam:format_3990: + text: edam:format_3990 + description: Audio Video Interleaved (AVI) format is a multimedia container + format for AVI files, that allows synchronous audio-with-video playback. + meaning: edam:format_3990 + title: AVI + edam:format_3991: + text: edam:format_3991 + description: A declaration file format for UCSC browsers track dataset display + characteristics. + meaning: edam:format_3991 + title: TrackDB + edam:format_3992: + text: edam:format_3992 + description: Compact Idiosyncratic Gapped Alignment Report format is a compressed + (run-length encoded) pairwise alignment format. It is useful for representing + long (e.g. genomic) pairwise alignments. + meaning: edam:format_3992 + title: CIGAR format + edam:format_3993: + text: edam:format_3993 + description: STL is a file format native to the stereolithography CAD software + created by 3D Systems. The format is used to save and share surface-rendered + 3D images and also for 3D printing. + meaning: edam:format_3993 + title: Stereolithography format + edam:format_3994: + text: edam:format_3994 + description: U3D (Universal 3D) is a compressed file format and data structure + for 3D computer graphics. It contains 3D model information such as triangle + meshes, lighting, shading, motion data, lines and points with color and + structure. + meaning: edam:format_3994 + title: U3D + edam:format_3995: + text: edam:format_3995 + description: Bitmap image format used for storing textures. + meaning: edam:format_3995 + title: Texture file format + edam:format_3996: + text: edam:format_3996 + description: Format for scripts writtenin Python - a widely used high-level + programming language for general-purpose programming. + meaning: edam:format_3996 + title: Python script + edam:format_3997: + text: edam:format_3997 + description: A digital multimedia container format most commonly used to store + video and audio. + meaning: edam:format_3997 + title: MPEG-4 + edam:format_3998: + text: edam:format_3998 + description: Format for scripts written in Perl - a family of high-level, + general-purpose, interpreted, dynamic programming languages. + meaning: edam:format_3998 + title: Perl script + edam:format_3999: + text: edam:format_3999 + description: Format for scripts written in the R language - an open source + programming language and software environment for statistical computing + and graphics that is supported by the R Foundation for Statistical Computing. + meaning: edam:format_3999 + title: R script + edam:format_4000: + text: edam:format_4000 + description: A file format for making dynamic documents (R Markdown scripts) + with the R language. + meaning: edam:format_4000 + title: R markdown + edam:format_4002: + text: edam:format_4002 + description: Format used by Python pickle module for serializing and de-serializing + a Python object structure. + meaning: edam:format_4002 + title: pickle + edam:format_4003: + text: edam:format_4003 + description: The standard binary file format used by NumPy - a fundamental + package for scientific computing with Python - for persisting a single arbitrary + NumPy array on disk. The format stores all of the shape and dtype information + necessary to reconstruct the array correctly. + meaning: edam:format_4003 + title: NumPy format + edam:format_4004: + text: edam:format_4004 + description: Format of repertoire (archive) files that can be read by SimToolbox + (a MATLAB toolbox for structured illumination fluorescence microscopy) or + alternatively extracted with zip file archiver software. + meaning: edam:format_4004 + title: SimTools repertoire file format + edam:format_4005: + text: edam:format_4005 + description: A configuration file used by various programs to store settings + that are specific to their respective software. + meaning: edam:format_4005 + title: Configuration file format + edam:format_4006: + text: edam:format_4006 + description: Format used by the Zstandard real-time compression algorithm. + meaning: edam:format_4006 + title: Zstandard format + edam:format_4007: + text: edam:format_4007 + description: The file format for MATLAB scripts or functions. + meaning: edam:format_4007 + title: MATLAB script + edam:format_4015: + text: edam:format_4015 + description: A data format for specifying parameter estimation problems in + systems biology. + meaning: edam:format_4015 + title: PEtab + edam:format_4018: + text: edam:format_4018 + description: Genomic Variant Call Format (gVCF) is a version of VCF that includes + not only the positions that are variant when compared to a reference genome, + but also the non-variant positions as ranges, including metrics of confidence + that the positions in the range are actually non-variant e.g. minimum read-depth + and genotype quality. + meaning: edam:format_4018 + title: gVCF + edam:format_4023: + text: edam:format_4023 + description: Chemical Markup Language (CML) is an XML-based format for encoding + detailed information about a wide range of chemical concepts. + meaning: edam:format_4023 + title: cml + edam:format_4024: + text: edam:format_4024 + description: Crystallographic Information File (CIF) is a data exchange standard + file format for Crystallographic Information and related Structural Science + data. + meaning: edam:format_4024 + title: cif + edam:format_4025: + text: edam:format_4025 + description: Format for describing the capabilities of a biosimulation tool + including the modeling frameworks, simulation algorithms, and modeling formats + that it supports, as well as metadata such as a list of the interfaces, + programming languages, and operating systems supported by the tool; a link + to download the tool; a list of the authors of the tool; and the license + to the tool. + meaning: edam:format_4025 + title: BioSimulators format for the specifications of biosimulation tools + edam:format_4026: + text: edam:format_4026 + description: Outlines the syntax and semantics of the input and output arguments + for command-line interfaces for biosimulation tools. + meaning: edam:format_4026 + title: BioSimulators standard for command-line interfaces for biosimulation + tools + edam:format_4035: + text: edam:format_4035 + description: Data format derived from the standard PDB format, which enables + user to incorporate parameters for charge and radius to the existing PDB + data file. + meaning: edam:format_4035 + title: PQR + edam:format_4036: + text: edam:format_4036 + description: Data format used in AutoDock 4 for storing atomic coordinates, + partial atomic charges and AutoDock atom types for both receptors and ligands. + meaning: edam:format_4036 + title: PDBQT + edam:format_4039: + text: edam:format_4039 + description: MSP is a data format for mass spectrometry data. + meaning: edam:format_4039 + title: MSP + edam:format_4041: + text: edam:format_4041 + description: maDMP stands for machine-actionable data management plan, a standard + for DMPs developed by the Research Data Alliance (RDA). + meaning: edam:format_4041 + title: maDMP + edam:format_4048: + text: edam:format_4048 + description: Nextflow is a workflow system for creating scalable, portable, + and reproducible workflows. + meaning: edam:format_4048 + title: Nextflow + edam:format_4049: + text: edam:format_4049 + description: The Snakemake workflow management system is a tool to create + reproducible and scalable data analyses. + meaning: edam:format_4049 + title: Snakemake + edam:format_4050: + text: edam:format_4050 + description: Sample and Data Relationship File for a proteomics experiment. + meaning: edam:format_4050 + title: SDRF + edam:format_4058: + text: edam:format_4058 + description: mzTab-M is a light-weight, tab-delimited format for mass spectrometry-based + chemical profiling data, including metabolomics. + meaning: edam:format_4058 + title: mzTab-M + edam:format_4059: + text: edam:format_4059 + description: mzTab-L is a light-weight, tab-delimited format for mass spectrometry-based + lipidomics data. It is a compatible version of mzTab-M, with additional + rules and information standard (reporting guidelines). + meaning: edam:format_4059 + title: mzTab-L + edam:format_4066: + text: edam:format_4066 + description: ISA-Tab Investigation file (i_Investigation.txt) contains metadata + describing the overall goals, means, and context of an investigation/experiment, + including references to associated Study and Assay files. + meaning: edam:format_4066 + title: ISA-Tab Investigation file + edam:format_4067: + text: edam:format_4067 + description: ISA-Tab Study file (s_*.txt) contains sample metadata describing + the subjects under study, their sources, characteristics, sampling methodology, + and any treatments or manipulations applied. + meaning: edam:format_4067 + title: ISA-Tab Study file + edam:format_4068: + text: edam:format_4068 + description: ISA-Tab Assay file (a_*.txt) contains assay metadata describing + test steps and analytical measurements performed on the sample material, + including measurement types, technology used, and references to raw and + derived data files. + meaning: edam:format_4068 + title: ISA-Tab Assay file + edam:format_4069: + text: edam:format_4069 + description: ISA-JSON stands for Investigation / Study / Assay (ISA) JavaScript + Object Notation (JSON) format, and it is comprised of metadata describing + observational or experimental scientific studies. + meaning: edam:format_4069 + title: ISA-JSON + edam:format_4070: + text: edam:format_4070 + description: mwTab is a tab-delimited text format developed by the Metabolomics + Workbench to facilitate programmatic processing of metabolomics data and + metadata suitable for submission to the repository. + meaning: edam:format_4070 + title: mwTab + edam:format_4071: + text: edam:format_4071 + description: MHD (MetabolomicsHub Common Data Model) is a JSON-based format + providing a standardised, FAIR-compliant data model for the exchange, discovery, + and reuse of metabolomics dataset metadata across international repositories. + meaning: edam:format_4071 + title: MHD + edam:format_4072: + text: edam:format_4072 + description: The MHD announcement file is a JSON-based format used to notify + MetabolomicsHub of new or updated dataset submissions, serving as a manifest + or notification file within the MHD data flow. + meaning: edam:format_4072 + title: MHD announcement + edam:format_4073: + text: edam:format_4073 + description: MetaboLights MAF (Metabolite Annotation File) is a tab-separated + file format used to report metabolites identified or annotated in a metabolomics + study, including compound identifiers, chemical structure representations, + mass-to-charge ratios, retention times, and per-sample quantitative measurements. + meaning: edam:format_4073 + title: MetaboLights MAF + reachable_from: + source_ontology: bioregistry:edam + source_nodes: + - edam:format_1915 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: false + EnumEthnicity: + name: EnumEthnicity + description: Participant ethnicity, specific to Hispanic or Latino. + from_schema: https://includedcc.org/common-access-model/EnumEthnicity + permissible_values: + CDCREC:2135-2: + text: CDCREC:2135-2 + title: Hispanic or Latino + aliases: + - hispanic_or_latino + CDCREC:2186-5: + text: CDCREC:2186-5 + title: Not Hispanic or Latino + aliases: + - not_hispanic_or_latino + EnumFamilyRelation: + name: EnumFamilyRelation + description: Definitions of family relations as provided by KIN Ontology. + from_schema: https://includedcc.org/common-access-model/EnumFamilyRelation + reachable_from: + source_ontology: http://purl.org/ga4gh/kin.owl + source_nodes: + - KIN:KIN_001 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: true + EnumFamilyRole: + name: EnumFamilyRole + description: Example terms related to an individual's role in a family study. + from_schema: https://includedcc.org/common-access-model/EnumFamilyRole + permissible_values: + snomedct:85900004: + text: snomedct:85900004 + title: Proband + aliases: + - proband + KIN:027: + text: KIN:027 + description: A relation that indicates that a person is the biological mother + of another person. + title: isBiologicalMotherOf + snomedct:72705000: + text: snomedct:72705000 + title: Mother + aliases: + - mother + EnumFamilyType: + name: EnumFamilyType + description: Enumerations describing research family type + from_schema: https://includedcc.org/common-access-model/EnumFamilyType + permissible_values: + CAMO:0000002: + text: CAMO:0000002 + description: This family study includes at a minimum one parent and one child. + title: Parent(s) and Child(ren) + CAMO:0000003: + text: CAMO:0000003 + description: This family study includes at a minimum one parent and one affected + child. + title: Duo + aliases: + - duo + CAMO:0000004: + text: CAMO:0000004 + description: This family study includes at a minimum two parents of one affected + child. + title: Trio + aliases: + - trio + CAMO:0000005: + text: CAMO:0000005 + description: This family study includes at a minimum two parents of one affected + child and at least one other child. + title: Trio+ + aliases: + - trio_plus + CAMO:0000006: + text: CAMO:0000006 + description: This family study includes only one or more cases. + title: Case Only + CAMO:0000007: + text: CAMO:0000007 + description: This family study includes only one or more probands. + title: Proband Only + aliases: + - proband_only + CAMO:0000008: + text: CAMO:0000008 + description: This family study includes only one or more controls. + title: Control Only + aliases: + - control_only + reachable_from: + source_ontology: camo + source_nodes: + - CAMO:0000001 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: true + EnumFileHashType: + name: EnumFileHashType + description: Types of file hashes supported. + from_schema: https://includedcc.org/common-access-model/EnumFileHashType + permissible_values: + MS:1000568: + text: MS:1000568 + description: MD5 (Message-Digest algorithm 5) is a (now deprecated) cryptographic + hash function with a 128-bit hash value used to check the integrity of files. + title: MD5 + aliases: + - md5 + CAMO:0000022: + text: CAMO:0000022 + description: The entity tag is a hash of the object. The ETag reflects changes + only to the contents of an object, not its metadata. The ETag may or may + not be an MD5 digest of the object data. + title: ETag + aliases: + - etag + MS:1000569: + text: MS:1000569 + description: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function + designed by the National Security Agency (NSA). It is also used to verify + file integrity. Since 2011 it has been deprecated by the NIST as a U. S. + government standard. + title: SHA-1 + aliases: + - sha1 + MS:1003151: + text: MS:1003151 + description: SHA-256 (member of Secure Hash Algorithm-2 family) is a cryptographic + hash function designed by the National Security Agency (NSA) and published + by the NIST as a U. S. government standard. It is also used to verify file + integrity. + title: SHA-256 + reachable_from: + source_ontology: camo + source_nodes: + - MS:1000561 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: true + EnumLaterality: + name: EnumLaterality + description: Laterality information for the site + from_schema: https://includedcc.org/common-access-model/EnumLaterality + reachable_from: + source_ontology: bioregistry:hp + source_nodes: + - HP:0012831 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: false + EnumOrganism: + name: EnumOrganism + description: Common Organism types. + from_schema: https://includedcc.org/common-access-model/EnumOrganism + permissible_values: + NCBITaxon:9606: + text: NCBITaxon:9606 + title: Human + aliases: + - human + NCBITaxon:10090: + text: NCBITaxon:10090 + title: Mus musculus + aliases: + - mouse + - house_mouse + EnumParticipantLifespanStage: + name: EnumParticipantLifespanStage + description: Stages of life during which participants may be recruited. From NICHD + Pediatric Terminology. https://evs.nci.nih.gov/ftp1/Pediatric_Terminologies/NICHD/About.html + title: Participant Lifespan Stage + from_schema: https://includedcc.org/common-access-model/EnumParticipantLifespanStage + reachable_from: + source_ontology: bioregistry:ncit + source_nodes: + - NCIT:C89335 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: false + EnumPresentAbsent: + name: EnumPresentAbsent + description: Options for describing presence or absence. Derived from SNOMED CT + Known codes. The "Known" codes and "Not suspected" are the broadest terms and + suitable for general use. + from_schema: https://includedcc.org/common-access-model/EnumPresentAbsent + permissible_values: + snomedct:410515003: + text: snomedct:410515003 + meaning: snomedct:410515003 + title: Known present + snomedct:410516002: + text: snomedct:410516002 + meaning: snomedct:410516002 + title: Known absent + snomedct:410590009: + text: snomedct:410590009 + meaning: snomedct:410590009 + title: Known possible + snomedct:410591008: + text: snomedct:410591008 + meaning: snomedct:410591008 + title: Definitely present + snomedct:410592001: + text: snomedct:410592001 + meaning: snomedct:410592001 + title: Probably present + snomedct:410593006: + text: snomedct:410593006 + meaning: snomedct:410593006 + title: Probably not present + snomedct:410594000: + text: snomedct:410594000 + meaning: snomedct:410594000 + title: Definitely not present + snomedct:410605003: + text: snomedct:410605003 + meaning: snomedct:410605003 + title: Confirmed present + snomedct:415684004: + text: snomedct:415684004 + meaning: snomedct:415684004 + title: Suspected + snomedct:428263003: + text: snomedct:428263003 + meaning: snomedct:428263003 + title: Not suspected + snomedct:723511001: + text: snomedct:723511001 + meaning: snomedct:723511001 + title: Refuted + reachable_from: + source_ontology: bioregistry:snomedct + source_nodes: + - snomedct:36692007 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: false + EnumProgram: + name: EnumProgram + description: Specific funding program examples. + title: Funding Programs + from_schema: https://includedcc.org/common-access-model/EnumProgram + permissible_values: + https://www.nih.gov/include-project: + text: https://www.nih.gov/include-project + description: The INCLUDE (INvestigation of Co-occurring conditions across + the Lifespan to Understand Down syndromE) Project was launched in June 2018 + in support of a Congressional directive in the fiscal year (FY) 2018 Omnibus + Appropriations. The directive called for a new trans-NIH research initiative + on critical health and quality-of-life needs for individuals with Down syndrome. + title: INCLUDE + aliases: + - include + https://commonfund.nih.gov/KidsFirst: + text: https://commonfund.nih.gov/KidsFirst + description: The goal of the Gabriella Miller Kids First Pediatric Research + Program (Kids First) is to help researchers uncover new insights into the + biology of childhood cancer and congenital anomalies, including the discovery + of shared genetic pathways between these disorders. Children with birth + defects have an increased risk of developing childhood cancer. This suggests + there are shared genetic pathways underlying some types of childhood cancer + and congenital anomalies. + title: Kids First + aliases: + - kf + EnumRace: + name: EnumRace + description: Participant Race + from_schema: https://includedcc.org/common-access-model/EnumRace + permissible_values: + CDCREC:1002-5: + text: CDCREC:1002-5 + title: American Indian or Alaska Native + aliases: + - american_indian_or_alaska_native + CDCREC:2028-9: + text: CDCREC:2028-9 + title: Asian + aliases: + - asian + CDCREC:2054-5: + text: CDCREC:2054-5 + title: Black or African American + aliases: + - black_or_african_american + CDCREC:2076-8: + text: CDCREC:2076-8 + title: Native Hawaiian or Other Pacific Islander + aliases: + - native_hawaiian_or_other_pacific_islander + CDCREC:2106-3: + text: CDCREC:2106-3 + title: White + aliases: + - white + CDCREC:2118-8: + text: CDCREC:2118-8 + title: Middle Eastern or North African + aliases: + - middle_eastern_or_north_african + EnumResearchDomain: + name: EnumResearchDomain + description: Domains of research activities. + title: Research Domain + from_schema: https://includedcc.org/common-access-model/EnumResearchDomain + permissible_values: + mesh:D001520: + text: mesh:D001520 + title: Behavior and Behavior Mechanisms + aliases: + - behavior_and_behavior_mechanisms + mesh:D006330: + text: mesh:D006330 + title: Congenital Heart Defects + aliases: + - congenital_heart_defects + mesh:D007154: + text: mesh:D007154 + title: Immune System Diseases + aliases: + - immune_system_diseases + mesh:D006402: + text: mesh:D006402 + title: Hematologic Diseases + aliases: + - hematologic_diseases + mesh:D065886: + text: mesh:D065886 + title: Neurodevelopment + aliases: + - neurodevelopment + mesh:D012893: + text: mesh:D012893 + title: Sleep Wake Disorders + aliases: + - sleep_wake_disorders + mesh:D013568: + text: mesh:D013568 + title: All Co-occurring Conditions + aliases: + - all_co_occurring_conditions + mesh:D010809: + text: mesh:D010809 + title: Physical Fitness + aliases: + - physical_fitness + EnumSampleCollectionMethod: + name: EnumSampleCollectionMethod + description: The approach used to collect the biospecimen. + from_schema: https://includedcc.org/common-access-model/EnumSampleCollectionMethod + reachable_from: + source_ontology: bioregistry:snomedct + source_nodes: + - snomedct:17636008 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: false + EnumSex: + name: EnumSex + description: Subject Sex + from_schema: https://includedcc.org/common-access-model/EnumSex + permissible_values: + snomedct:248152002: + text: snomedct:248152002 + title: Female + aliases: + - female + snomedct:248153007: + text: snomedct:248153007 + title: Male + aliases: + - male + EnumSite: + name: EnumSite + description: The location of the specimen collection. + from_schema: https://includedcc.org/common-access-model/EnumSite + reachable_from: + source_ontology: bioregistry:snomedct + source_nodes: + - snomedct:442083009 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: false + EnumSpatialQualifiers: + name: EnumSpatialQualifiers + description: Any spatial/location qualifiers. + from_schema: https://includedcc.org/common-access-model/EnumSpatialQualifiers + enum_uri: http://hl7.org/fhir/us/mcode/ValueSet/mcode-body-location-qualifier-vs + permissible_values: + snomedct:103339001: + text: snomedct:103339001 + meaning: snomedct:103339001 + title: Long axis + snomedct:103340004: + text: snomedct:103340004 + meaning: snomedct:103340004 + title: Short axis + snomedct:103341000: + text: snomedct:103341000 + meaning: snomedct:103341000 + title: Off axis + snomedct:103342007: + text: snomedct:103342007 + meaning: snomedct:103342007 + title: Mid-longitudinal + snomedct:103343002: + text: snomedct:103343002 + meaning: snomedct:103343002 + title: Parasagittal + snomedct:103344008: + text: snomedct:103344008 + meaning: snomedct:103344008 + title: Transvesical + snomedct:103345009: + text: snomedct:103345009 + meaning: snomedct:103345009 + title: Transthecal + snomedct:103346005: + text: snomedct:103346005 + meaning: snomedct:103346005 + title: Transsplenic + snomedct:103347001: + text: snomedct:103347001 + meaning: snomedct:103347001 + title: Transrenal + snomedct:103348006: + text: snomedct:103348006 + meaning: snomedct:103348006 + title: Transpleural + snomedct:103349003: + text: snomedct:103349003 + meaning: snomedct:103349003 + title: Transpancreatic + snomedct:103353001: + text: snomedct:103353001 + meaning: snomedct:103353001 + title: Transgastric + snomedct:103354007: + text: snomedct:103354007 + meaning: snomedct:103354007 + title: Transmural + snomedct:11070000: + text: snomedct:11070000 + meaning: snomedct:11070000 + title: Capsular + snomedct:1146002: + text: snomedct:1146002 + meaning: snomedct:1146002 + title: Arcuate + snomedct:11896004: + text: snomedct:11896004 + meaning: snomedct:11896004 + title: Intermediate + snomedct:1217011006: + text: snomedct:1217011006 + meaning: snomedct:1217011006 + title: Non-adjacent + snomedct:131183008: + text: snomedct:131183008 + meaning: snomedct:131183008 + title: Intra-articular + snomedct:131184002: + text: snomedct:131184002 + meaning: snomedct:131184002 + title: Area of defined region + snomedct:131185001: + text: snomedct:131185001 + meaning: snomedct:131185001 + title: Vertical long axis + snomedct:131186000: + text: snomedct:131186000 + meaning: snomedct:131186000 + title: Horizontal long axis + snomedct:131187009: + text: snomedct:131187009 + meaning: snomedct:131187009 + title: Major Axis + snomedct:131188004: + text: snomedct:131188004 + meaning: snomedct:131188004 + title: Minor Axis + snomedct:131189007: + text: snomedct:131189007 + meaning: snomedct:131189007 + title: Perpendicular axis + snomedct:131190003: + text: snomedct:131190003 + meaning: snomedct:131190003 + title: Radius + snomedct:131191004: + text: snomedct:131191004 + meaning: snomedct:131191004 + title: Perimeter + snomedct:14414005: + text: snomedct:14414005 + meaning: snomedct:14414005 + title: Peripheral + snomedct:1483009: + text: snomedct:1483009 + meaning: snomedct:1483009 + title: Angular + snomedct:18769003: + text: snomedct:18769003 + meaning: snomedct:18769003 + title: Juxta-posed + snomedct:21006006: + text: snomedct:21006006 + meaning: snomedct:21006006 + title: Hemispheric + snomedct:21481007: + text: snomedct:21481007 + meaning: snomedct:21481007 + title: Over + snomedct:24020000: + text: snomedct:24020000 + meaning: snomedct:24020000 + title: Horizontal + snomedct:24028007: + text: snomedct:24028007 + meaning: snomedct:24028007 + title: Right + snomedct:24422004: + text: snomedct:24422004 + meaning: snomedct:24422004 + title: Axial + snomedct:255527003: + text: snomedct:255527003 + meaning: snomedct:255527003 + title: Horizontal - 3 and 9 + snomedct:255528008: + text: snomedct:255528008 + meaning: snomedct:255528008 + title: Horizontal and vertical + snomedct:261129000: + text: snomedct:261129000 + meaning: snomedct:261129000 + title: Mediolateral + snomedct:26216008: + text: snomedct:26216008 + meaning: snomedct:26216008 + title: Central + snomedct:26283006: + text: snomedct:26283006 + meaning: snomedct:26283006 + title: Superficial + snomedct:263687007: + text: snomedct:263687007 + meaning: snomedct:263687007 + title: Bony extra-articular + snomedct:263688002: + text: snomedct:263688002 + meaning: snomedct:263688002 + title: Bony intra-articular + snomedct:264731004: + text: snomedct:264731004 + meaning: snomedct:264731004 + title: Lateral to the left + snomedct:264732006: + text: snomedct:264732006 + meaning: snomedct:264732006 + title: Lateral to the right + snomedct:264733001: + text: snomedct:264733001 + meaning: snomedct:264733001 + title: Linear longitudinal + snomedct:264737000: + text: snomedct:264737000 + meaning: snomedct:264737000 + title: Linear transverse + snomedct:264741001: + text: snomedct:264741001 + meaning: snomedct:264741001 + title: Posterolateral to the left + snomedct:264742008: + text: snomedct:264742008 + meaning: snomedct:264742008 + title: Posterolateral to the right + snomedct:264839005: + text: snomedct:264839005 + meaning: snomedct:264839005 + title: Horizontal cleavage + snomedct:27237009: + text: snomedct:27237009 + meaning: snomedct:27237009 + title: Triangular + snomedct:28241006: + text: snomedct:28241006 + meaning: snomedct:28241006 + title: Rhomboid + snomedct:28947002: + text: snomedct:28947002 + meaning: snomedct:28947002 + title: Right curve + snomedct:30730003: + text: snomedct:30730003 + meaning: snomedct:30730003 + title: Sagittal + snomedct:30899007: + text: snomedct:30899007 + meaning: snomedct:30899007 + title: Quadrangular + snomedct:32381004: + text: snomedct:32381004 + meaning: snomedct:32381004 + title: Portal + snomedct:32400000: + text: snomedct:32400000 + meaning: snomedct:32400000 + title: Preaxial + snomedct:33096000: + text: snomedct:33096000 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Bent + snomedct:40415009: + text: snomedct:40415009 + meaning: snomedct:40415009 + title: Proximal + snomedct:410674003: + text: snomedct:410674003 + meaning: snomedct:410674003 + title: Regional + snomedct:410679008: + text: snomedct:410679008 + meaning: snomedct:410679008 + title: Surface + snomedct:42798000: + text: snomedct:42798000 + meaning: snomedct:42798000 + title: Area + snomedct:43674008: + text: snomedct:43674008 + meaning: snomedct:43674008 + title: Apical + snomedct:45226003: + text: snomedct:45226003 + meaning: snomedct:45226003 + title: Cylindrical + snomedct:46053002: + text: snomedct:46053002 + meaning: snomedct:46053002 + title: Distal + snomedct:47021000: + text: snomedct:47021000 + meaning: snomedct:47021000 + title: Left curve + snomedct:49370004: + text: snomedct:49370004 + meaning: snomedct:49370004 + title: Lateral + snomedct:49530007: + text: snomedct:49530007 + meaning: snomedct:49530007 + title: Afferent + snomedct:50009006: + text: snomedct:50009006 + meaning: snomedct:50009006 + title: Linear + snomedct:50362007: + text: snomedct:50362007 + meaning: snomedct:50362007 + title: Stellate + snomedct:50974003: + text: snomedct:50974003 + meaning: snomedct:50974003 + title: Junctional + snomedct:51440002: + text: snomedct:51440002 + meaning: snomedct:51440002 + title: Right and left + snomedct:5686001: + text: snomedct:5686001 + meaning: snomedct:5686001 + title: Remote + snomedct:56924007: + text: snomedct:56924007 + meaning: snomedct:56924007 + title: Square + snomedct:57183005: + text: snomedct:57183005 + meaning: snomedct:57183005 + title: Along edge + snomedct:57195005: + text: snomedct:57195005 + meaning: snomedct:57195005 + title: Basal + snomedct:59410002: + text: snomedct:59410002 + meaning: snomedct:59410002 + title: Rectangular + snomedct:60301000: + text: snomedct:60301000 + meaning: snomedct:60301000 + title: Curved + snomedct:60583000: + text: snomedct:60583000 + meaning: snomedct:60583000 + title: Postaxial + snomedct:61397002: + text: snomedct:61397002 + meaning: snomedct:61397002 + title: Subcapsular + snomedct:62083003: + text: snomedct:62083003 + meaning: snomedct:62083003 + title: Sectional + snomedct:62372003: + text: snomedct:62372003 + meaning: snomedct:62372003 + title: Segmental + snomedct:62824007: + text: snomedct:62824007 + meaning: snomedct:62824007 + title: Transverse + snomedct:66787007: + text: snomedct:66787007 + meaning: snomedct:66787007 + title: Cephalic + snomedct:68493006: + text: snomedct:68493006 + meaning: snomedct:68493006 + title: Gutter + snomedct:69320009: + text: snomedct:69320009 + meaning: snomedct:69320009 + title: Extracellular + snomedct:69389007: + text: snomedct:69389007 + meaning: snomedct:69389007 + title: Saccular + snomedct:710097009: + text: snomedct:710097009 + meaning: snomedct:710097009 + title: Incisal + snomedct:710098004: + text: snomedct:710098004 + meaning: snomedct:710098004 + title: Occlusal + snomedct:710099007: + text: snomedct:710099007 + meaning: snomedct:710099007 + title: Mesial + snomedct:7771000: + text: snomedct:7771000 + meaning: snomedct:7771000 + title: Left + snomedct:795002: + text: snomedct:795002 + meaning: snomedct:795002 + title: Deep + snomedct:81654009: + text: snomedct:81654009 + meaning: snomedct:81654009 + title: Coronal + snomedct:83167003: + text: snomedct:83167003 + meaning: snomedct:83167003 + title: Intracellular + snomedct:84177009: + text: snomedct:84177009 + meaning: snomedct:84177009 + title: Straddling + snomedct:87687004: + text: snomedct:87687004 + meaning: snomedct:87687004 + title: Extra-articular + snomedct:90069004: + text: snomedct:90069004 + meaning: snomedct:90069004 + title: Posterolateral + snomedct:112233002: + text: snomedct:112233002 + meaning: snomedct:112233002 + title: Marginal + snomedct:1197041002: + text: snomedct:1197041002 + meaning: snomedct:1197041002 + title: Intercostal + snomedct:1285325005: + text: snomedct:1285325005 + meaning: 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snomedct:255348000: + text: snomedct:255348000 + meaning: snomedct:255348000 + title: Inframammary + snomedct:255472009: + text: snomedct:255472009 + meaning: snomedct:255472009 + title: Panretinal + snomedct:255482005: + text: snomedct:255482005 + meaning: snomedct:255482005 + title: Left upper segment + snomedct:255486008: + text: snomedct:255486008 + meaning: snomedct:255486008 + title: Lower segment + snomedct:255496004: + text: snomedct:255496004 + meaning: snomedct:255496004 + title: Right lower segment + snomedct:255499006: + text: snomedct:255499006 + meaning: snomedct:255499006 + title: Right upper segment + snomedct:255501003: + text: snomedct:255501003 + meaning: snomedct:255501003 + title: Upper segment + snomedct:255546002: + text: snomedct:255546002 + meaning: snomedct:255546002 + title: Underlay + snomedct:255547006: + text: snomedct:255547006 + meaning: snomedct:255547006 + title: Overlay + snomedct:255548001: + text: snomedct:255548001 + meaning: snomedct:255548001 + title: Sandwich graft + snomedct:255549009: + text: snomedct:255549009 + meaning: snomedct:255549009 + title: Anterior + snomedct:255550009: + text: snomedct:255550009 + meaning: snomedct:255550009 + title: Anterior to epiglottis + snomedct:255551008: + text: snomedct:255551008 + meaning: snomedct:255551008 + title: Posterior + snomedct:255552001: + text: snomedct:255552001 + meaning: snomedct:255552001 + title: Posterior to epiglottis + snomedct:255554000: + text: snomedct:255554000 + meaning: snomedct:255554000 + title: Dorsal + snomedct:255557007: + text: snomedct:255557007 + meaning: snomedct:255557007 + title: Intracerebral + snomedct:255558002: + text: snomedct:255558002 + meaning: snomedct:255558002 + title: Intragastric + snomedct:255559005: + text: snomedct:255559005 + meaning: snomedct:255559005 + title: Intramuscular + snomedct:255560000: + text: snomedct:255560000 + meaning: snomedct:255560000 + title: Intravenous + snomedct:255561001: + text: snomedct:255561001 + meaning: 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snomedct:255690001 + title: Drug in contact with skin + snomedct:258186003: + text: snomedct:258186003 + meaning: snomedct:258186003 + title: Via collaterals + snomedct:258187007: + text: snomedct:258187007 + meaning: snomedct:258187007 + title: Via native vessel - graft impaired + snomedct:258188002: + text: snomedct:258188002 + meaning: snomedct:258188002 + title: Via native vessel - graft occluded + snomedct:258189005: + text: snomedct:258189005 + meaning: snomedct:258189005 + title: Via skip graft + snomedct:258329003: + text: snomedct:258329003 + meaning: snomedct:258329003 + title: Supratentorial + snomedct:258330008: + text: snomedct:258330008 + meaning: snomedct:258330008 + title: Infratentorial + snomedct:260240005: + text: snomedct:260240005 + meaning: snomedct:260240005 + title: Interdental + snomedct:260318004: + text: snomedct:260318004 + meaning: snomedct:260318004 + title: 1 o'clock position + snomedct:260319007: + text: snomedct:260319007 + meaning: snomedct:260319007 + title: 1.30 o'clock position + snomedct:260322009: + text: snomedct:260322009 + meaning: snomedct:260322009 + title: 10 o'clock position + snomedct:260323004: + text: snomedct:260323004 + meaning: snomedct:260323004 + title: 10.30 o'clock position + snomedct:260324005: + text: snomedct:260324005 + meaning: snomedct:260324005 + title: 11 o'clock position + snomedct:260325006: + text: snomedct:260325006 + meaning: snomedct:260325006 + title: 11.30 o'clock position + snomedct:260326007: + text: snomedct:260326007 + meaning: snomedct:260326007 + title: 12 o'clock position + snomedct:260327003: + text: snomedct:260327003 + meaning: snomedct:260327003 + title: 12.30 o'clock position + snomedct:260328008: + text: snomedct:260328008 + meaning: snomedct:260328008 + title: 2 o'clock position + snomedct:260329000: + text: snomedct:260329000 + meaning: snomedct:260329000 + title: 2.30 o'clock position + snomedct:260330005: + text: snomedct:260330005 + meaning: snomedct:260330005 + title: 3 o'clock position + snomedct:260331009: + text: snomedct:260331009 + meaning: snomedct:260331009 + title: 3.30 o'clock position + snomedct:260333007: + text: snomedct:260333007 + meaning: snomedct:260333007 + title: 4 o'clock position + snomedct:260334001: + text: snomedct:260334001 + meaning: snomedct:260334001 + title: 4.30 o'clock position + snomedct:260335000: + text: snomedct:260335000 + meaning: snomedct:260335000 + title: 5 o'clock position + snomedct:260336004: + text: snomedct:260336004 + meaning: snomedct:260336004 + title: 5.30 o'clock position + snomedct:260337008: + text: snomedct:260337008 + meaning: snomedct:260337008 + title: 6 o'clock position + snomedct:260338003: + text: snomedct:260338003 + meaning: snomedct:260338003 + title: 6.30 o'clock position + snomedct:260339006: + text: snomedct:260339006 + meaning: snomedct:260339006 + title: 7 o'clock position + snomedct:260340008: + text: snomedct:260340008 + meaning: snomedct:260340008 + title: 7.30 o'clock position + snomedct:260341007: + text: snomedct:260341007 + meaning: snomedct:260341007 + title: 8 o'clock position + snomedct:260342000: + text: snomedct:260342000 + meaning: snomedct:260342000 + title: 8.30 o'clock position + snomedct:260343005: + text: snomedct:260343005 + meaning: snomedct:260343005 + title: 9 o'clock position + snomedct:260344004: + text: snomedct:260344004 + meaning: snomedct:260344004 + title: 9.30 o'clock position + snomedct:260419006: + text: snomedct:260419006 + meaning: snomedct:260419006 + title: Projection + snomedct:260421001: + text: snomedct:260421001 + meaning: snomedct:260421001 + title: Left lateral oblique + snomedct:260422008: + text: snomedct:260422008 + meaning: snomedct:260422008 + title: C1-C2 left oblique + snomedct:260424009: + text: snomedct:260424009 + meaning: snomedct:260424009 + title: Right lateral oblique + snomedct:260425005: + text: snomedct:260425005 + meaning: snomedct:260425005 + title: C1-C2 right oblique + snomedct:260426006: + text: snomedct:260426006 + meaning: snomedct:260426006 + title: Medial oblique + snomedct:260427002: + text: snomedct:260427002 + meaning: snomedct:260427002 + title: Oblique lateral + snomedct:260428007: + text: snomedct:260428007 + meaning: snomedct:260428007 + title: Mandible X-ray - lateral oblique + snomedct:260430009: + text: snomedct:260430009 + meaning: snomedct:260430009 + title: Anteroposterior left lateral decubitus + snomedct:260431008: + text: snomedct:260431008 + meaning: snomedct:260431008 + title: C1-C2 left lateral + snomedct:260432001: + text: snomedct:260432001 + meaning: snomedct:260432001 + title: Left true lateral + snomedct:260434000: + text: snomedct:260434000 + meaning: snomedct:260434000 + title: Anteroposterior right lateral decubitus + snomedct:260435004: + text: snomedct:260435004 + meaning: snomedct:260435004 + title: C1-C2 right lateral + snomedct:260436003: + text: snomedct:260436003 + meaning: snomedct:260436003 + title: Right true lateral + snomedct:260437007: + text: snomedct:260437007 + meaning: snomedct:260437007 + title: Lateral vertical beam + snomedct:260438002: + text: snomedct:260438002 + meaning: snomedct:260438002 + title: Lateral horizontal beam + snomedct:260439005: + text: snomedct:260439005 + meaning: snomedct:260439005 + title: Lateral inverted + snomedct:260440007: + text: snomedct:260440007 + meaning: snomedct:260440007 + title: True lateral of mandible + snomedct:260441006: + text: snomedct:260441006 + meaning: snomedct:260441006 + title: Frog lateral + snomedct:260442004: + text: snomedct:260442004 + meaning: snomedct:260442004 + title: Erect lateral + snomedct:260443009: + text: snomedct:260443009 + meaning: snomedct:260443009 + title: Anteroposterior inverted + snomedct:260444003: + text: snomedct:260444003 + meaning: snomedct:260444003 + title: Rotated posteroanterior + snomedct:260445002: + text: snomedct:260445002 + meaning: snomedct:260445002 + title: Posteroanterior 20 degree + snomedct:260446001: + text: snomedct:260446001 + meaning: snomedct:260446001 + title: Posteroanterior in ulnar deviation + snomedct:260447005: + text: snomedct:260447005 + meaning: snomedct:260447005 + title: Penetrated posteroanterior + snomedct:260450008: + text: snomedct:260450008 + meaning: snomedct:260450008 + title: Lordotic projection + snomedct:260451007: + text: snomedct:260451007 + meaning: snomedct:260451007 + title: Supine decubitus + snomedct:260452000: + text: snomedct:260452000 + meaning: snomedct:260452000 + title: Decubitus + snomedct:260453005: + text: snomedct:260453005 + meaning: snomedct:260453005 + title: Internal/external rotation + snomedct:260454004: + text: snomedct:260454004 + meaning: snomedct:260454004 + title: 45 degree projection + snomedct:260455003: + text: snomedct:260455003 + meaning: snomedct:260455003 + title: Head and neck projection + snomedct:260458001: + text: snomedct:260458001 + meaning: snomedct:260458001 + title: Slit Towne's + snomedct:260459009: + text: snomedct:260459009 + meaning: snomedct:260459009 + title: Reverse Towne's + snomedct:260460004: + text: snomedct:260460004 + meaning: snomedct:260460004 + title: Slit 35 degree fronto-occipital + snomedct:260461000: + text: snomedct:260461000 + meaning: snomedct:260461000 + title: Vertex projection + snomedct:260463002: + text: snomedct:260463002 + meaning: snomedct:260463002 + title: Left Stenver's + snomedct:260464008: + text: snomedct:260464008 + meaning: snomedct:260464008 + title: Right Stenver's + snomedct:260465009: + text: snomedct:260465009 + meaning: snomedct:260465009 + title: Occipitofrontal projection + snomedct:260466005: + text: snomedct:260466005 + meaning: snomedct:260466005 + title: Occipitomental projection + snomedct:260467001: + text: snomedct:260467001 + meaning: snomedct:260467001 + title: Occipitomental - erect + snomedct:260468006: + text: snomedct:260468006 + meaning: snomedct:260468006 + title: Occipitomental - tilted + snomedct:260469003: + text: snomedct:260469003 + meaning: snomedct:260469003 + title: Occipitomental - prone + snomedct:260470002: + text: snomedct:260470002 + meaning: snomedct:260470002 + title: Occipitomental - 15 degree + snomedct:260471003: + text: snomedct:260471003 + meaning: snomedct:260471003 + title: Occipitomental - 30 degree + snomedct:260472005: + text: snomedct:260472005 + meaning: snomedct:260472005 + title: Occipitomental - 45 degree + snomedct:260473000: + text: snomedct:260473000 + meaning: snomedct:260473000 + title: Waters - 35 degree tilt to radiographic baseline + snomedct:260475007: + text: snomedct:260475007 + meaning: snomedct:260475007 + title: Submentovertical reduced exposure for zygomatic arches + snomedct:260476008: + text: snomedct:260476008 + meaning: snomedct:260476008 + title: Slit submentovertical + snomedct:260477004: + text: snomedct:260477004 + meaning: snomedct:260477004 + title: Dental/oral projection + snomedct:260478009: + text: snomedct:260478009 + meaning: snomedct:260478009 + title: Body - molar + snomedct:260479001: + text: snomedct:260479001 + meaning: snomedct:260479001 + title: Body - premolar + snomedct:260481004: + text: snomedct:260481004 + meaning: snomedct:260481004 + title: Ramus projection + snomedct:260482006: + text: snomedct:260482006 + meaning: snomedct:260482006 + title: Bimolar projection + snomedct:260483001: + text: snomedct:260483001 + meaning: snomedct:260483001 + title: Transpharyngeal projection + snomedct:260484007: + text: snomedct:260484007 + meaning: snomedct:260484007 + title: Transmaxillary projection + snomedct:260485008: + text: snomedct:260485008 + meaning: snomedct:260485008 + title: Temporomandibular joint setting + snomedct:260486009: + text: snomedct:260486009 + meaning: snomedct:260486009 + title: Maxillary sinus setting + snomedct:260487000: + text: snomedct:260487000 + meaning: snomedct:260487000 + title: Dental panoramic + snomedct:260489002: + text: snomedct:260489002 + meaning: snomedct:260489002 + title: Implant setting projection + snomedct:260490006: + text: snomedct:260490006 + meaning: snomedct:260490006 + title: Segmental setting + snomedct:260491005: + text: snomedct:260491005 + meaning: snomedct:260491005 + title: Axial view for sesamoid bones + snomedct:260492003: + text: snomedct:260492003 + meaning: snomedct:260492003 + title: Brewerton's projection + snomedct:260493008: + text: snomedct:260493008 + meaning: snomedct:260493008 + title: Harris Beath axial projection + snomedct:260494002: + text: snomedct:260494002 + meaning: snomedct:260494002 + title: Intercondylar projection + snomedct:260496000: + text: snomedct:260496000 + meaning: snomedct:260496000 + title: Judet projection + snomedct:260497009: + text: snomedct:260497009 + meaning: snomedct:260497009 + title: Mortice projection + snomedct:260499007: + text: snomedct:260499007 + meaning: snomedct:260499007 + title: Occlusal projection + snomedct:260500003: + text: snomedct:260500003 + meaning: snomedct:260500003 + title: Projected oblique occlusal + snomedct:260501004: + text: snomedct:260501004 + meaning: snomedct:260501004 + title: Lower true occlusal + snomedct:260502006: + text: snomedct:260502006 + meaning: snomedct:260502006 + title: Power grip series + snomedct:260503001: + text: snomedct:260503001 + meaning: snomedct:260503001 + title: Radial head projection + snomedct:260504007: + text: snomedct:260504007 + meaning: snomedct:260504007 + title: Skyline projection + snomedct:260506009: + text: snomedct:260506009 + meaning: snomedct:260506009 + title: Van Rosen projection + snomedct:260514003: + text: snomedct:260514003 + meaning: snomedct:260514003 + title: Via body reference line + snomedct:260520002: + text: snomedct:260520002 + meaning: snomedct:260520002 + title: Extracorporeal + snomedct:260521003: + text: snomedct:260521003 + meaning: snomedct:260521003 + title: Internal + snomedct:260528009: + text: snomedct:260528009 + meaning: snomedct:260528009 + title: Median + snomedct:260529001: + text: snomedct:260529001 + meaning: snomedct:260529001 + title: Vectors + snomedct:260530006: + text: snomedct:260530006 + meaning: snomedct:260530006 + title: Via body region + snomedct:260532003: + text: snomedct:260532003 + meaning: snomedct:260532003 + title: Thoracoabdominal + snomedct:260535001: + text: snomedct:260535001 + meaning: snomedct:260535001 + title: Lateral extrapleural + snomedct:260541008: + text: snomedct:260541008 + meaning: snomedct:260541008 + title: Nasopancreatic + snomedct:260544000: + text: snomedct:260544000 + meaning: snomedct:260544000 + title: Endobronchial + snomedct:260549005: + text: snomedct:260549005 + meaning: snomedct:260549005 + title: Orogastric + snomedct:260568008: + text: snomedct:260568008 + meaning: snomedct:260568008 + title: Via cardiovascular system + snomedct:260602004: + text: snomedct:260602004 + meaning: snomedct:260602004 + title: Via superficialized vessel (qualifier value) + snomedct:260620008: + text: snomedct:260620008 + meaning: snomedct:260620008 + title: Postaural approach + snomedct:260637001: + text: snomedct:260637001 + meaning: snomedct:260637001 + title: Sublabial transseptal + snomedct:260641002: + text: snomedct:260641002 + meaning: snomedct:260641002 + title: Extraperitoneal + snomedct:260642009: + text: snomedct:260642009 + meaning: snomedct:260642009 + title: Retroperitoneal + snomedct:260668002: + text: snomedct:260668002 + meaning: snomedct:260668002 + title: Venovenous + snomedct:261045000: + text: snomedct:261045000 + meaning: snomedct:261045000 + title: Anterior dorsal + snomedct:261052003: + text: snomedct:261052003 + meaning: snomedct:261052003 + title: Aortocoronary + snomedct:261054002: + text: snomedct:261054002 + meaning: snomedct:261054002 + title: Arterio-arterial + snomedct:261055001: + text: snomedct:261055001 + meaning: snomedct:261055001 + title: Arteriovenous + snomedct:261057009: + text: snomedct:261057009 + meaning: 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snomedct:261095004 + meaning: snomedct:261095004 + title: Into ureter + snomedct:261097007: + text: snomedct:261097007 + meaning: snomedct:261097007 + title: Intracoronal + snomedct:261100002: + text: snomedct:261100002 + meaning: snomedct:261100002 + title: Intraperitoneal + snomedct:261101003: + text: snomedct:261101003 + meaning: snomedct:261101003 + title: Intravascular + snomedct:261117009: + text: snomedct:261117009 + meaning: snomedct:261117009 + title: Laryngotracheal + snomedct:261119007: + text: snomedct:261119007 + meaning: snomedct:261119007 + title: Lateral part + snomedct:261122009: + text: snomedct:261122009 + meaning: snomedct:261122009 + title: Lower + snomedct:261123004: + text: snomedct:261123004 + meaning: snomedct:261123004 + title: Lower anterior + snomedct:261128008: + text: snomedct:261128008 + meaning: snomedct:261128008 + title: Medial part + snomedct:261131009: + text: snomedct:261131009 + meaning: snomedct:261131009 + title: Midaxillary + snomedct:261132002: 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snomedct:261165005: + text: snomedct:261165005 + meaning: snomedct:261165005 + title: Posterior dorsal + snomedct:261172006: + text: snomedct:261172006 + meaning: snomedct:261172006 + title: Proximal third + snomedct:261174007: + text: snomedct:261174007 + meaning: snomedct:261174007 + title: Retrocecal (qualifier value) + snomedct:261175008: + text: snomedct:261175008 + meaning: snomedct:261175008 + title: Retroduodenal + snomedct:261181000: + text: snomedct:261181000 + meaning: snomedct:261181000 + title: Tracheobronchial + snomedct:261183002: + text: snomedct:261183002 + meaning: snomedct:261183002 + title: Upper + snomedct:261184008: + text: snomedct:261184008 + meaning: snomedct:261184008 + title: Upper anterior + snomedct:261185009: + text: snomedct:261185009 + meaning: snomedct:261185009 + title: Venoarterial + snomedct:261186005: + text: snomedct:261186005 + meaning: snomedct:261186005 + title: Ventral part + snomedct:261411001: + text: snomedct:261411001 + meaning: snomedct:261411001 + title: Distal third + snomedct:261446009: + text: snomedct:261446009 + meaning: snomedct:261446009 + title: Transpulmonary annulus + snomedct:261466000: + text: snomedct:261466000 + meaning: snomedct:261466000 + title: Via intrapulmonary trunk tunnel + snomedct:261469007: + text: snomedct:261469007 + meaning: snomedct:261469007 + title: Via orbitotomy + snomedct:261760007: + text: snomedct:261760007 + meaning: snomedct:261760007 + title: Deep to rectus abdominis + snomedct:261788001: + text: snomedct:261788001 + meaning: snomedct:261788001 + title: Exteriorized (qualifier value) + snomedct:261799004: + text: snomedct:261799004 + meaning: snomedct:261799004 + title: From existing graft to coronary artery + snomedct:261847009: + text: snomedct:261847009 + meaning: snomedct:261847009 + title: Intracervical + snomedct:261851006: + text: snomedct:261851006 + meaning: snomedct:261851006 + title: Internally to bladder + snomedct:261945002: + text: snomedct:261945002 + meaning: snomedct:261945002 + title: Mixed venoarterial and venovenous + snomedct:261964008: + text: snomedct:261964008 + meaning: snomedct:261964008 + title: Muscle fibers only (qualifier value) + snomedct:261980003: + text: snomedct:261980003 + meaning: snomedct:261980003 + title: Neuromuscular junction only + snomedct:262379005: + text: snomedct:262379005 + meaning: snomedct:262379005 + title: Dominant side + snomedct:262458006: + text: snomedct:262458006 + meaning: snomedct:262458006 + title: Non-dominant side + snomedct:263672002: + text: snomedct:263672002 + meaning: snomedct:263672002 + title: Anocutaneous + snomedct:263674001: + text: snomedct:263674001 + meaning: snomedct:263674001 + title: Anovestibular + snomedct:263759007: + text: snomedct:263759007 + meaning: snomedct:263759007 + title: Foraminal + snomedct:263794000: + text: snomedct:263794000 + meaning: snomedct:263794000 + title: Left side-by-side + snomedct:263795004: + text: snomedct:263795004 + meaning: snomedct:263795004 + title: Left sided + snomedct:263830001: + text: snomedct:263830001 + meaning: snomedct:263830001 + title: Panacinar + snomedct:263831002: + text: snomedct:263831002 + meaning: snomedct:263831002 + title: Panlobular + snomedct:263838008: + text: snomedct:263838008 + meaning: snomedct:263838008 + title: Periacinar + snomedct:263846009: + text: snomedct:263846009 + meaning: snomedct:263846009 + title: Prevascular + snomedct:263848005: + text: snomedct:263848005 + meaning: snomedct:263848005 + title: Proximal acinar + snomedct:263869007: + text: snomedct:263869007 + meaning: snomedct:263869007 + title: Separate + snomedct:263887005: + text: snomedct:263887005 + meaning: snomedct:263887005 + title: Subcutaneous + snomedct:263938007: + text: snomedct:263938007 + meaning: snomedct:263938007 + title: Above middle turbinate + snomedct:263942005: + text: snomedct:263942005 + meaning: snomedct:263942005 + title: Anterior segment + snomedct:263943000: + text: snomedct:263943000 + meaning: snomedct:263943000 + title: Anterior wall + snomedct:263952009: + text: snomedct:263952009 + meaning: snomedct:263952009 + title: Periorbital + snomedct:263953004: + text: snomedct:263953004 + meaning: snomedct:263953004 + title: Perioral + snomedct:263955006: + text: snomedct:263955006 + meaning: snomedct:263955006 + title: Atlantoaxial + snomedct:263958008: + text: snomedct:263958008 + meaning: snomedct:263958008 + title: Between left common carotid and brachiocephalic arteries + snomedct:263959000: + text: snomedct:263959000 + meaning: snomedct:263959000 + title: Between left subclavian and common carotid arteries + snomedct:263965000: + text: snomedct:263965000 + meaning: snomedct:263965000 + title: Bronchocutaneous + snomedct:263966004: + text: snomedct:263966004 + meaning: snomedct:263966004 + title: Bronchopleural + snomedct:263969006: + text: snomedct:263969006 + meaning: snomedct:263969006 + title: Centriacinar + snomedct:263970007: + text: snomedct:263970007 + meaning: snomedct:263970007 + title: Centrilobular + snomedct:263974003: + text: snomedct:263974003 + meaning: snomedct:263974003 + title: Cervicothoracic + snomedct:263975002: + text: snomedct:263975002 + meaning: snomedct:263975002 + title: Cervicothoracolumbar + snomedct:263981005: + text: snomedct:263981005 + meaning: snomedct:263981005 + title: Distal to left subclavian artery + snomedct:263990003: + text: snomedct:263990003 + meaning: snomedct:263990003 + title: Duodenoduodenal + snomedct:263991004: + text: snomedct:263991004 + meaning: snomedct:263991004 + title: Duodenojejunal + snomedct:263996009: + text: snomedct:263996009 + meaning: snomedct:263996009 + title: Extrafoveal + snomedct:263997000: + text: snomedct:263997000 + meaning: snomedct:263997000 + title: Extraureteric + snomedct:263998005: + text: snomedct:263998005 + meaning: snomedct:263998005 + title: Extravaginal + snomedct:263999002: + text: snomedct:263999002 + meaning: snomedct:263999002 + title: From anterosuperior-superior bridging leaflet commissure + snomedct:264000000: + text: snomedct:264000000 + meaning: snomedct:264000000 + title: From left inferior bridging leaflet-lateral commissure + snomedct:264001001: + text: snomedct:264001001 + meaning: snomedct:264001001 + title: From left septal commissure + snomedct:264002008: + text: snomedct:264002008 + meaning: snomedct:264002008 + title: From left superior bridging leaflet-lateral commissure + snomedct:264004009: + text: snomedct:264004009 + meaning: snomedct:264004009 + title: From left ventricular component + snomedct:264005005: + text: snomedct:264005005 + meaning: snomedct:264005005 + title: From right anterosuperior-inferior commissure + snomedct:264006006: + text: snomedct:264006006 + meaning: snomedct:264006006 + title: From right inferior bridging leaflet-inferior commissure + snomedct:264007002: + text: snomedct:264007002 + meaning: snomedct:264007002 + title: From right septal commissure + snomedct:264008007: + text: snomedct:264008007 + meaning: snomedct:264008007 + title: From right ventricular component + snomedct:264011008: + text: snomedct:264011008 + meaning: snomedct:264011008 + title: Gastroduodenal + snomedct:264012001: + text: snomedct:264012001 + meaning: snomedct:264012001 + title: Gastrogastric + snomedct:264015004: + text: snomedct:264015004 + meaning: snomedct:264015004 + title: Hepatopleural + snomedct:264023002: + text: snomedct:264023002 + meaning: snomedct:264023002 + title: Ileocecal (qualifier value) + snomedct:264024008: + text: snomedct:264024008 + meaning: snomedct:264024008 + title: Ileocolic + snomedct:264025009: + text: snomedct:264025009 + meaning: snomedct:264025009 + title: Iliofemoral vein zone + snomedct:264026005: + text: snomedct:264026005 + meaning: snomedct:264026005 + title: Ileo-ileal + snomedct:264027001: + text: snomedct:264027001 + meaning: snomedct:264027001 + title: Ileorectal + snomedct:264030008: + text: snomedct:264030008 + meaning: snomedct:264030008 + title: In joint + snomedct:264031007: + text: snomedct:264031007 + meaning: snomedct:264031007 + title: In situ + snomedct:264034004: + text: snomedct:264034004 + meaning: snomedct:264034004 + title: Infracardiac + snomedct:264035003: + text: snomedct:264035003 + meaning: snomedct:264035003 + title: Infravesical + snomedct:264040006: + text: snomedct:264040006 + meaning: snomedct:264040006 + title: Interchordal + snomedct:264041005: + text: snomedct:264041005 + meaning: snomedct:264041005 + title: Interdigital + snomedct:264042003: + text: snomedct:264042003 + meaning: snomedct:264042003 + title: Intervertebral + snomedct:264043008: + text: snomedct:264043008 + meaning: snomedct:264043008 + title: Intraligamentous + snomedct:264044002: + text: snomedct:264044002 + meaning: snomedct:264044002 + title: Intracardiac + snomedct:264045001: + text: snomedct:264045001 + meaning: snomedct:264045001 + title: Intraluminal + snomedct:264046000: + text: snomedct:264046000 + meaning: snomedct:264046000 + title: Intramammary + snomedct:264047009: + text: snomedct:264047009 + meaning: snomedct:264047009 + title: Intrapulmonary + snomedct:264049007: + text: snomedct:264049007 + meaning: snomedct:264049007 + title: Intravaginal + snomedct:264056001: + text: snomedct:264056001 + meaning: snomedct:264056001 + title: Lateral column + snomedct:264060003: + text: snomedct:264060003 + meaning: snomedct:264060003 + title: Lateral segment + snomedct:264065008: + text: snomedct:264065008 + meaning: snomedct:264065008 + title: Left anterior + snomedct:264067000: + text: snomedct:264067000 + meaning: snomedct:264067000 + title: Left lateral wall + snomedct:264068005: + text: snomedct:264068005 + meaning: snomedct:264068005 + title: Left lower segment + snomedct:264076007: + text: snomedct:264076007 + meaning: snomedct:264076007 + title: Lower left parasternal + snomedct:264081003: + text: snomedct:264081003 + meaning: snomedct:264081003 + title: Lower third + snomedct:264083000: + text: snomedct:264083000 + meaning: snomedct:264083000 + title: Lumbosacral + snomedct:264096004: + text: snomedct:264096004 + meaning: snomedct:264096004 + title: Medial segment + snomedct:264103001: + text: snomedct:264103001 + meaning: snomedct:264103001 + title: Midtarsal + snomedct:264107000: + text: snomedct:264107000 + meaning: snomedct:264107000 + title: Paravertebral + snomedct:264110007: + text: snomedct:264110007 + meaning: snomedct:264110007 + title: Esophagocolonic (qualifier value) + snomedct:264111006: + text: snomedct:264111006 + meaning: snomedct:264111006 + title: Esophagogastric (qualifier value) + snomedct:264112004: + text: snomedct:264112004 + meaning: snomedct:264112004 + title: Esophagojejunal (qualifier value) + snomedct:264114003: + text: snomedct:264114003 + meaning: snomedct:264114003 + title: Ostium + snomedct:264117005: + text: snomedct:264117005 + meaning: snomedct:264117005 + title: Paraesophageal (qualifier value) + snomedct:264118000: + text: snomedct:264118000 + meaning: snomedct:264118000 + title: Paraduodenal + snomedct:264119008: + text: snomedct:264119008 + meaning: snomedct:264119008 + title: Parafoveal + snomedct:264121003: + text: snomedct:264121003 + meaning: snomedct:264121003 + title: Paramacular + snomedct:264123000: + text: snomedct:264123000 + meaning: snomedct:264123000 + title: Paraseptal + snomedct:264124006: + text: snomedct:264124006 + meaning: snomedct:264124006 + title: Paraumbilical + snomedct:264126008: + text: snomedct:264126008 + meaning: snomedct:264126008 + title: Paravascular + snomedct:264127004: + text: snomedct:264127004 + meaning: snomedct:264127004 + title: Paraovarian + snomedct:264128009: + text: snomedct:264128009 + meaning: snomedct:264128009 + title: Paratracheal + snomedct:264131005: + text: snomedct:264131005 + meaning: snomedct:264131005 + title: Peri-intestinal + snomedct:264133008: + text: snomedct:264133008 + meaning: snomedct:264133008 + title: Perianal + snomedct:264136000: + text: snomedct:264136000 + meaning: snomedct:264136000 + title: Perihepatic + snomedct:264137009: + text: snomedct:264137009 + meaning: snomedct:264137009 + title: Perinephric + snomedct:264139007: + text: snomedct:264139007 + meaning: snomedct:264139007 + title: Peripancreatic + snomedct:264142001: + text: snomedct:264142001 + meaning: snomedct:264142001 + title: Perisplenic + snomedct:264153007: + text: snomedct:264153007 + meaning: snomedct:264153007 + title: Posterior pole + snomedct:264154001: + text: snomedct:264154001 + meaning: snomedct:264154001 + title: Posterior segment + snomedct:264159006: + text: snomedct:264159006 + meaning: snomedct:264159006 + title: Posterior wall + snomedct:264168008: + text: snomedct:264168008 + meaning: snomedct:264168008 + title: Rectocloacal + snomedct:264169000: + text: snomedct:264169000 + meaning: snomedct:264169000 + title: Rectocutaneous + snomedct:264170004: + text: snomedct:264170004 + meaning: snomedct:264170004 + title: Rectourethral + snomedct:264171000: + text: snomedct:264171000 + meaning: snomedct:264171000 + title: Rectovaginal + snomedct:264172007: + text: snomedct:264172007 + meaning: snomedct:264172007 + title: Rectovesical + snomedct:264173002: + text: snomedct:264173002 + meaning: snomedct:264173002 + title: Rectovulval + snomedct:264174008: + text: snomedct:264174008 + meaning: snomedct:264174008 + title: Retromammary + snomedct:264175009: + text: snomedct:264175009 + meaning: snomedct:264175009 + title: Retrocolumellar + snomedct:264176005: + text: snomedct:264176005 + meaning: snomedct:264176005 + title: Right anterior + snomedct:264178006: + text: snomedct:264178006 + meaning: snomedct:264178006 + title: Right lateral wall + snomedct:264179003: + text: snomedct:264179003 + meaning: snomedct:264179003 + title: Right side-by-side + snomedct:264180000: + text: snomedct:264180000 + meaning: snomedct:264180000 + title: Right sided + snomedct:264193005: + text: snomedct:264193005 + meaning: snomedct:264193005 + title: Segment + snomedct:264201006: + text: snomedct:264201006 + meaning: snomedct:264201006 + title: Sternocostal + snomedct:264202004: + text: snomedct:264202004 + meaning: snomedct:264202004 + title: Subaortic + snomedct:264205002: + text: snomedct:264205002 + meaning: snomedct:264205002 + title: Subareolar + snomedct:264206001: + text: snomedct:264206001 + meaning: snomedct:264206001 + title: Subconjunctival + snomedct:264208000: + text: snomedct:264208000 + meaning: snomedct:264208000 + title: Subcostal + snomedct:264209008: + text: snomedct:264209008 + meaning: snomedct:264209008 + title: Subfoveal + snomedct:264216009: + text: snomedct:264216009 + meaning: snomedct:264216009 + title: Superficial to rectus abdominis + snomedct:264217000: + text: snomedct:264217000 + meaning: snomedct:264217000 + title: Superior + snomedct:264221007: + text: snomedct:264221007 + meaning: snomedct:264221007 + title: Supraumbilical + snomedct:264222000: + text: snomedct:264222000 + meaning: snomedct:264222000 + title: Supracardiac + snomedct:264224004: + text: snomedct:264224004 + meaning: snomedct:264224004 + title: Supraglottic + snomedct:264225003: + text: snomedct:264225003 + meaning: snomedct:264225003 + title: Suprahepatic + snomedct:264227006: + text: snomedct:264227006 + meaning: snomedct:264227006 + title: Tarsometatarsal + snomedct:264232007: + text: snomedct:264232007 + meaning: snomedct:264232007 + title: Thoracolumbar + snomedct:264245006: + text: snomedct:264245006 + meaning: snomedct:264245006 + title: Upper left parasternal + snomedct:264253003: + text: snomedct:264253003 + meaning: snomedct:264253003 + title: Upper third + snomedct:264261008: + text: snomedct:264261008 + meaning: snomedct:264261008 + title: Cholecystoduodenal + snomedct:264262001: + text: snomedct:264262001 + meaning: snomedct:264262001 + title: Cholecystenteric (qualifier value) + snomedct:264263006: + text: snomedct:264263006 + meaning: snomedct:264263006 + title: Cholecystogastric + snomedct:264264000: + text: snomedct:264264000 + meaning: snomedct:264264000 + title: Choledochoduodenal + snomedct:264266003: + text: snomedct:264266003 + meaning: snomedct:264266003 + title: Colocolic + snomedct:264267007: + text: snomedct:264267007 + meaning: snomedct:264267007 + title: Colorectal + snomedct:264463009: + text: snomedct:264463009 + meaning: snomedct:264463009 + title: Epitrochlear + snomedct:264940008: + text: snomedct:264940008 + meaning: snomedct:264940008 + title: Under inferior bridging leaflet + snomedct:264941007: + text: snomedct:264941007 + meaning: snomedct:264941007 + title: Under superior bridging leaflet + snomedct:272288000: + text: snomedct:272288000 + meaning: snomedct:272288000 + title: Onlay + snomedct:272425003: + text: snomedct:272425003 + meaning: snomedct:272425003 + title: General site descriptor + snomedct:272427006: + text: snomedct:272427006 + meaning: snomedct:272427006 + title: Anatomical part descriptor + snomedct:272428001: + text: snomedct:272428001 + meaning: snomedct:272428001 + title: Anatomical third + snomedct:272429009: + text: snomedct:272429009 + meaning: snomedct:272429009 + title: Part structure + snomedct:272430004: + text: snomedct:272430004 + meaning: snomedct:272430004 + title: Column structure + snomedct:272431000: + text: snomedct:272431000 + meaning: snomedct:272431000 + title: Segment structure + snomedct:272432007: + text: snomedct:272432007 + meaning: snomedct:272432007 + title: Wall structure + snomedct:272434008: + text: snomedct:272434008 + meaning: snomedct:272434008 + title: Anatomical relationship descriptor + snomedct:272435009: + text: snomedct:272435009 + meaning: snomedct:272435009 + title: Centri-location + snomedct:272436005: + text: snomedct:272436005 + meaning: snomedct:272436005 + title: Circum-location + snomedct:272437001: + text: snomedct:272437001 + meaning: snomedct:272437001 + title: Extra-location + snomedct:272438006: + text: snomedct:272438006 + meaning: snomedct:272438006 + title: Extrapleural + snomedct:272439003: + text: snomedct:272439003 + meaning: snomedct:272439003 + title: Infra-location + snomedct:272440001: + text: snomedct:272440001 + meaning: snomedct:272440001 + title: Inter-location + snomedct:272441002: + text: snomedct:272441002 + meaning: snomedct:272441002 + title: Intra-location + snomedct:272442009: + text: snomedct:272442009 + meaning: snomedct:272442009 + title: Mid-location + snomedct:272443004: + text: snomedct:272443004 + meaning: snomedct:272443004 + title: Pan-location + snomedct:272444005: + text: snomedct:272444005 + meaning: snomedct:272444005 + title: Para-location + snomedct:272446007: + text: snomedct:272446007 + meaning: snomedct:272446007 + title: Per-location + snomedct:272447003: + text: snomedct:272447003 + meaning: snomedct:272447003 + title: Peri-location + snomedct:272448008: + text: snomedct:272448008 + meaning: snomedct:272448008 + title: Post-location + snomedct:272449000: + text: snomedct:272449000 + meaning: snomedct:272449000 + title: Pre-location + snomedct:272450000: + text: snomedct:272450000 + meaning: snomedct:272450000 + title: Retro-location + snomedct:272451001: + text: snomedct:272451001 + meaning: snomedct:272451001 + title: Sub-location + snomedct:272452008: + text: snomedct:272452008 + meaning: snomedct:272452008 + title: Supra-location + snomedct:272455005: + text: snomedct:272455005 + meaning: snomedct:272455005 + title: Inferosuperior projection + snomedct:272456006: + text: snomedct:272456006 + meaning: snomedct:272456006 + title: Apical projection + snomedct:272457002: + text: snomedct:272457002 + meaning: snomedct:272457002 + title: Vertical projection + snomedct:272458007: + text: snomedct:272458007 + meaning: snomedct:272458007 + title: Prone projection + snomedct:272459004: + text: snomedct:272459004 + meaning: snomedct:272459004 + title: Supine projection + snomedct:272460009: + text: snomedct:272460009 + meaning: snomedct:272460009 + title: Anterior projection + snomedct:272461008: + text: snomedct:272461008 + meaning: snomedct:272461008 + title: Right posterior projection + snomedct:272462001: + text: snomedct:272462001 + meaning: snomedct:272462001 + title: Left posterior projection + snomedct:272464000: + text: snomedct:272464000 + meaning: snomedct:272464000 + title: Perorbital projection + snomedct:272465004: + text: snomedct:272465004 + meaning: snomedct:272465004 + title: Temporomandibular joint projection + snomedct:272466003: + text: snomedct:272466003 + meaning: snomedct:272466003 + title: Optic foramen projection + snomedct:272467007: + text: snomedct:272467007 + meaning: snomedct:272467007 + title: Lateral facial skeleton projection + snomedct:272468002: + text: snomedct:272468002 + meaning: snomedct:272468002 + title: Ear projection + snomedct:272469005: + text: snomedct:272469005 + meaning: snomedct:272469005 + title: Mid face projection + snomedct:272470006: + text: snomedct:272470006 + meaning: snomedct:272470006 + title: Cervical spine projection + snomedct:272472003: + text: snomedct:272472003 + meaning: snomedct:272472003 + title: Macro projection + snomedct:272473008: + text: snomedct:272473008 + meaning: snomedct:272473008 + title: Outlet projection + snomedct:272474002: + text: snomedct:272474002 + meaning: snomedct:272474002 + title: Swimmer's projection + snomedct:272475001: + text: snomedct:272475001 + meaning: snomedct:272475001 + title: Tibial tuberosity projection + snomedct:272476000: + text: snomedct:272476000 + meaning: snomedct:272476000 + title: Transthoracic projection + snomedct:272478004: + text: snomedct:272478004 + meaning: snomedct:272478004 + title: Transcranial projection + snomedct:272479007: + text: snomedct:272479007 + meaning: snomedct:272479007 + title: Posteroanterior projection + snomedct:272480005: + text: snomedct:272480005 + meaning: snomedct:272480005 + title: Horizontal projection + snomedct:272481009: + text: snomedct:272481009 + meaning: snomedct:272481009 + title: Erect projection + snomedct:272482002: + text: snomedct:272482002 + meaning: snomedct:272482002 + title: Adduction projection + snomedct:272483007: + text: snomedct:272483007 + meaning: snomedct:272483007 + title: True projection + snomedct:272484001: + text: snomedct:272484001 + meaning: snomedct:272484001 + title: Contralateral projection + snomedct:272485000: + text: snomedct:272485000 + meaning: snomedct:272485000 + title: Clockface position + snomedct:272486004: + text: snomedct:272486004 + meaning: snomedct:272486004 + title: Trans-direction + snomedct:272487008: + text: snomedct:272487008 + meaning: snomedct:272487008 + title: Into-structure + snomedct:272488003: + text: snomedct:272488003 + meaning: snomedct:272488003 + title: From-structure + snomedct:272489006: + text: snomedct:272489006 + meaning: snomedct:272489006 + title: Via values + snomedct:272496008: + text: snomedct:272496008 + meaning: snomedct:272496008 + title: Via incision + snomedct:276749003: + text: snomedct:276749003 + meaning: snomedct:276749003 + title: Epi-location + snomedct:276825009: + text: snomedct:276825009 + meaning: snomedct:276825009 + title: Overlapping sites + snomedct:276979001: + text: snomedct:276979001 + meaning: snomedct:276979001 + title: Aortoiliac + snomedct:277292000: + text: snomedct:277292000 + meaning: snomedct:277292000 + title: Endo-location + snomedct:277407002: + text: snomedct:277407002 + meaning: snomedct:277407002 + title: Deep locations + snomedct:277409004: + text: snomedct:277409004 + meaning: snomedct:277409004 + title: Superficial locations + snomedct:277410009: + text: snomedct:277410009 + meaning: snomedct:277410009 + title: Anterior locations + snomedct:277411008: + text: snomedct:277411008 + meaning: snomedct:277411008 + title: Posterior locations + snomedct:277412001: + text: snomedct:277412001 + meaning: snomedct:277412001 + title: Proximal locations + snomedct:277413006: + text: snomedct:277413006 + meaning: snomedct:277413006 + title: Distal locations + snomedct:277414000: + text: snomedct:277414000 + meaning: snomedct:277414000 + title: Between locations + snomedct:277415004: + text: snomedct:277415004 + meaning: snomedct:277415004 + title: Above locations + snomedct:277593009: + text: snomedct:277593009 + meaning: snomedct:277593009 + title: Right posterior + snomedct:277594003: + text: snomedct:277594003 + meaning: snomedct:277594003 + title: Left posterior + snomedct:277681008: + text: snomedct:277681008 + meaning: snomedct:277681008 + title: Intrastomal + snomedct:277685004: + text: snomedct:277685004 + meaning: snomedct:277685004 + title: Tubo-ovarian + snomedct:277686003: + text: snomedct:277686003 + meaning: snomedct:277686003 + title: Peritubular + snomedct:277806003: + text: snomedct:277806003 + meaning: snomedct:277806003 + title: Sidedness + snomedct:278227002: + text: snomedct:278227002 + meaning: snomedct:278227002 + title: Limited structures + snomedct:278255003: + text: snomedct:278255003 + meaning: snomedct:278255003 + title: Posterior projection + snomedct:278267001: + text: snomedct:278267001 + meaning: snomedct:278267001 + title: Abduction projection + snomedct:278318001: + text: snomedct:278318001 + meaning: snomedct:278318001 + title: Transorbital projection + snomedct:278701003: + text: snomedct:278701003 + meaning: snomedct:278701003 + title: Periumbilical + snomedct:278702005: + text: snomedct:278702005 + meaning: snomedct:278702005 + title: Transumbilical + snomedct:285418008: + text: snomedct:285418008 + meaning: snomedct:285418008 + title: Subcuticular + snomedct:298107004: + text: snomedct:298107004 + meaning: snomedct:298107004 + title: Orthotopic + snomedct:298108009: + text: snomedct:298108009 + meaning: snomedct:298108009 + title: Heterotopic + snomedct:298109001: + text: snomedct:298109001 + meaning: snomedct:298109001 + title: Ectopic + snomedct:303218009: + text: snomedct:303218009 + meaning: snomedct:303218009 + title: Subfascial + snomedct:303231004: + text: snomedct:303231004 + meaning: snomedct:303231004 + title: Intracranial + snomedct:303232006: + text: snomedct:303232006 + meaning: snomedct:303232006 + title: Extracranial + snomedct:303483009: + text: snomedct:303483009 + meaning: snomedct:303483009 + title: Subcranial + snomedct:304047000: + text: snomedct:304047000 + meaning: snomedct:304047000 + title: Transannular + snomedct:304059001: + text: snomedct:304059001 + meaning: snomedct:304059001 + title: Endocardial + snomedct:306766009: + text: snomedct:306766009 + meaning: snomedct:306766009 + title: Low - site descriptor + snomedct:306767000: + text: snomedct:306767000 + meaning: snomedct:306767000 + title: High - site descriptor + snomedct:312206004: + text: snomedct:312206004 + meaning: snomedct:312206004 + title: Periapical + snomedct:3583002: + text: snomedct:3583002 + meaning: snomedct:3583002 + title: Caudal + snomedct:373863008: + text: snomedct:373863008 + meaning: snomedct:373863008 + title: Intracavitary + snomedct:397406000: + text: snomedct:397406000 + meaning: snomedct:397406000 + title: Collateral branch of vessel + snomedct:397421006: + text: snomedct:397421006 + meaning: snomedct:397421006 + title: Vessel origin + snomedct:398236008: + text: snomedct:398236008 + meaning: snomedct:398236008 + title: Intrauterine + snomedct:398994001: + text: snomedct:398994001 + meaning: snomedct:398994001 + title: Five chamber view + snomedct:398996004: + text: snomedct:398996004 + meaning: snomedct:398996004 + title: Leonard-George projection + snomedct:398998003: + text: snomedct:398998003 + meaning: snomedct:398998003 + title: Right ventricular inflow tract view + snomedct:399000008: + text: snomedct:399000008 + meaning: snomedct:399000008 + title: Mayer projection + snomedct:399001007: + text: snomedct:399001007 + meaning: snomedct:399001007 + title: Posterior emissive projection + snomedct:399002000: + text: snomedct:399002000 + meaning: snomedct:399002000 + title: Nolke projection + snomedct:399003005: + text: snomedct:399003005 + meaning: snomedct:399003005 + title: Hughston projection + snomedct:399004004: + text: snomedct:399004004 + meaning: snomedct:399004004 + title: Oblique axial projection + snomedct:399005003: + text: snomedct:399005003 + meaning: snomedct:399005003 + title: Miller projection + snomedct:399006002: + text: snomedct:399006002 + meaning: snomedct:399006002 + title: Left posterior oblique projection + snomedct:399011000: + text: snomedct:399011000 + meaning: snomedct:399011000 + title: Axillary tail mammography view + snomedct:399012007: + text: snomedct:399012007 + meaning: snomedct:399012007 + title: Medial-lateral emissive projection + snomedct:399013002: + text: snomedct:399013002 + meaning: snomedct:399013002 + title: Chassard-Lapin projection + snomedct:399022001: + text: snomedct:399022001 + meaning: snomedct:399022001 + title: Pirie projection + snomedct:399024000: + text: snomedct:399024000 + meaning: snomedct:399024000 + title: May projection + snomedct:399025004: + text: snomedct:399025004 + meaning: snomedct:399025004 + title: Ischerwood projection + snomedct:399026003: + text: snomedct:399026003 + meaning: snomedct:399026003 + title: Zanelli projection + snomedct:399028002: + text: snomedct:399028002 + meaning: snomedct:399028002 + title: Clements projection + snomedct:399033003: + text: snomedct:399033003 + meaning: snomedct:399033003 + title: Frontal projection + snomedct:399036006: + text: snomedct:399036006 + meaning: snomedct:399036006 + title: Parasternal short axis view at the mitral valve level + snomedct:399037002: + text: snomedct:399037002 + meaning: snomedct:399037002 + title: Lewis projection + snomedct:399038007: + text: snomedct:399038007 + meaning: snomedct:399038007 + title: Right posterior oblique projection + snomedct:399043000: + text: snomedct:399043000 + meaning: snomedct:399043000 + title: Cardiac imaging views + snomedct:399059000: + text: snomedct:399059000 + meaning: snomedct:399059000 + title: Postero-anterior oblique projection + snomedct:399061009: + text: snomedct:399061009 + meaning: snomedct:399061009 + title: Axial projection + snomedct:399065000: + text: snomedct:399065000 + meaning: snomedct:399065000 + title: Causton projection + snomedct:399067008: + text: snomedct:399067008 + meaning: snomedct:399067008 + title: Lateral projection + snomedct:399071006: + text: snomedct:399071006 + meaning: snomedct:399071006 + title: Plantodorsal projection + snomedct:399073009: + text: snomedct:399073009 + meaning: snomedct:399073009 + title: Fuchs projection + snomedct:399074003: + text: snomedct:399074003 + meaning: snomedct:399074003 + title: Left anterior oblique emissive projection + snomedct:399075002: + text: snomedct:399075002 + meaning: snomedct:399075002 + title: Right posterior oblique emissive projection + snomedct:399080006: + text: snomedct:399080006 + meaning: snomedct:399080006 + title: Kuchendorf projection + snomedct:399082003: + text: snomedct:399082003 + meaning: snomedct:399082003 + title: Gaynor-Hart projection + snomedct:399083008: + text: snomedct:399083008 + meaning: snomedct:399083008 + title: Hsieh projection + snomedct:399089007: + text: snomedct:399089007 + meaning: snomedct:399089007 + title: Oblique axial emissive projection + snomedct:399098005: + text: snomedct:399098005 + meaning: snomedct:399098005 + title: Staunig projection + snomedct:399099002: + text: snomedct:399099002 + meaning: snomedct:399099002 + title: Latero-medial oblique projection + snomedct:399101009: + text: snomedct:399101009 + meaning: snomedct:399101009 + title: Cranio-caudal projection exaggerated medially + snomedct:399103007: + text: snomedct:399103007 + meaning: snomedct:399103007 + title: Friedman projection + snomedct:399106004: + text: snomedct:399106004 + meaning: snomedct:399106004 + title: Suprasternal long axis view + snomedct:399108003: + text: snomedct:399108003 + meaning: snomedct:399108003 + title: Right anterior oblique emissive projection + snomedct:399110001: + text: snomedct:399110001 + meaning: snomedct:399110001 + title: Tangential projection + snomedct:399113004: + text: snomedct:399113004 + meaning: snomedct:399113004 + title: Eponymous projection + snomedct:399118008: + text: snomedct:399118008 + meaning: snomedct:399118008 + title: Left lateral emissive projection + snomedct:399125001: + text: snomedct:399125001 + meaning: snomedct:399125001 + title: Twining projection + snomedct:399127009: + text: snomedct:399127009 + meaning: snomedct:399127009 + title: Teufel projection + snomedct:399129007: + text: snomedct:399129007 + meaning: snomedct:399129007 + title: Holly projection + snomedct:399130002: + text: snomedct:399130002 + meaning: snomedct:399130002 + title: West Point projection + snomedct:399132005: + text: snomedct:399132005 + meaning: snomedct:399132005 + title: Frontal-oblique axial projection + snomedct:399135007: + text: snomedct:399135007 + meaning: snomedct:399135007 + title: Left anterior oblique projection + snomedct:399136008: + text: snomedct:399136008 + meaning: snomedct:399136008 + title: Left posterior oblique emissive projection + snomedct:399138009: + text: snomedct:399138009 + meaning: snomedct:399138009 + title: Penner projection + snomedct:399139001: + text: snomedct:399139001 + meaning: snomedct:399139001 + title: Parasternal long axis view + snomedct:399142007: + text: snomedct:399142007 + meaning: snomedct:399142007 + title: Albers-Schönberg projection + snomedct:399145009: + text: snomedct:399145009 + meaning: snomedct:399145009 + title: Suprasternal short axis view + snomedct:399146005: + text: snomedct:399146005 + meaning: snomedct:399146005 + title: Grashey projection + snomedct:399148006: + text: snomedct:399148006 + meaning: snomedct:399148006 + title: Chamberlain projection + snomedct:399152006: + text: snomedct:399152006 + meaning: snomedct:399152006 + title: Kandel projection + snomedct:399156009: + text: snomedct:399156009 + meaning: snomedct:399156009 + title: Laquerriere-Pierquin projection + snomedct:399157000: + text: snomedct:399157000 + meaning: snomedct:399157000 + title: Norgaard's projection + snomedct:399159002: + text: snomedct:399159002 + meaning: snomedct:399159002 + title: Latero-medial oblique emissive projection + snomedct:399160007: + text: snomedct:399160007 + meaning: snomedct:399160007 + title: Frontal oblique projection + snomedct:399161006: + text: snomedct:399161006 + meaning: snomedct:399161006 + title: Cleavage mammography view + snomedct:399162004: + text: snomedct:399162004 + meaning: snomedct:399162004 + title: Cranio-caudal projection + snomedct:399163009: + text: snomedct:399163009 + meaning: snomedct:399163009 + title: Magnified projection + snomedct:399168000: + text: snomedct:399168000 + meaning: snomedct:399168000 + title: Hough projection + snomedct:399169008: + text: snomedct:399169008 + meaning: snomedct:399169008 + title: Lauenstein projection + snomedct:399171008: + text: snomedct:399171008 + meaning: snomedct:399171008 + title: Ottonello projection + snomedct:399173006: + text: snomedct:399173006 + meaning: snomedct:399173006 + title: Left lateral projection + snomedct:399179005: + text: snomedct:399179005 + meaning: snomedct:399179005 + title: Lawrence projection + snomedct:399181007: + text: snomedct:399181007 + meaning: snomedct:399181007 + title: Pawlow projection + snomedct:399182000: + text: snomedct:399182000 + meaning: snomedct:399182000 + title: Oblique projection + snomedct:399184004: + text: snomedct:399184004 + meaning: snomedct:399184004 + title: Left oblique projection + snomedct:399188001: + text: snomedct:399188001 + meaning: snomedct:399188001 + title: Superolateral to inferomedial oblique projection + snomedct:399192008: + text: snomedct:399192008 + meaning: snomedct:399192008 + title: Cranio-caudal projection exaggerated laterally + snomedct:399195005: + text: snomedct:399195005 + meaning: snomedct:399195005 + title: Right ventricular outflow tract view + snomedct:399196006: + text: snomedct:399196006 + meaning: snomedct:399196006 + title: Caudo-cranial projection + snomedct:399198007: + text: snomedct:399198007 + meaning: snomedct:399198007 + title: Right lateral projection + snomedct:399199004: + text: snomedct:399199004 + meaning: snomedct:399199004 + title: Henschen projection + snomedct:399200001: + text: snomedct:399200001 + meaning: snomedct:399200001 + title: Subcostal short axis view + snomedct:399201002: + text: snomedct:399201002 + meaning: snomedct:399201002 + title: Judd projection + snomedct:399206007: + text: snomedct:399206007 + meaning: snomedct:399206007 + title: Law projection + snomedct:399212002: + text: snomedct:399212002 + meaning: snomedct:399212002 + title: Camp-Coventry projection + snomedct:399214001: + text: snomedct:399214001 + meaning: snomedct:399214001 + title: Apical four chamber view + snomedct:399215000: + text: snomedct:399215000 + meaning: snomedct:399215000 + title: Wigby-Taylor projection + snomedct:399218003: + text: snomedct:399218003 + meaning: snomedct:399218003 + title: Arcelin projection + snomedct:399225005: + text: snomedct:399225005 + meaning: snomedct:399225005 + title: Oblique caudo-cranial projection + snomedct:399227002: + text: snomedct:399227002 + meaning: snomedct:399227002 + title: Kemp Harper projection + snomedct:399232001: + text: snomedct:399232001 + meaning: snomedct:399232001 + title: Apical two chamber view + snomedct:399234000: + text: snomedct:399234000 + meaning: snomedct:399234000 + title: Rhese projection + snomedct:399236003: + text: snomedct:399236003 + meaning: snomedct:399236003 + title: Right oblique projection + snomedct:399237007: + text: snomedct:399237007 + meaning: snomedct:399237007 + title: Alexander projection + snomedct:399239005: + text: snomedct:399239005 + meaning: snomedct:399239005 + title: Parasternal short axis view at the aortic valve level + snomedct:399241006: + text: snomedct:399241006 + meaning: snomedct:399241006 + title: Titterington projection + snomedct:399242004: + text: snomedct:399242004 + meaning: snomedct:399242004 + title: Acanthioparietal projection + snomedct:399243009: + text: snomedct:399243009 + meaning: snomedct:399243009 + title: Settegast projection + snomedct:399245002: + text: snomedct:399245002 + meaning: snomedct:399245002 + title: Cleaves projection + snomedct:399246001: + text: snomedct:399246001 + meaning: snomedct:399246001 + title: Blackett-Healy projection + snomedct:399247005: + text: snomedct:399247005 + meaning: snomedct:399247005 + title: Tarrant projection + snomedct:399251007: + text: snomedct:399251007 + meaning: snomedct:399251007 + title: Lorenz projection + snomedct:399255003: + text: snomedct:399255003 + meaning: snomedct:399255003 + title: Submentovertical projection + snomedct:399260004: + text: snomedct:399260004 + meaning: snomedct:399260004 + title: Mediolateral projection + snomedct:399263002: + text: snomedct:399263002 + meaning: snomedct:399263002 + title: Beclere projection + snomedct:399265009: + text: snomedct:399265009 + meaning: snomedct:399265009 + title: Exaggerated cranio-caudal projection + snomedct:399268006: + text: snomedct:399268006 + meaning: snomedct:399268006 + title: Medio-lateral oblique emissive projection + snomedct:399270002: + text: snomedct:399270002 + meaning: snomedct:399270002 + title: Towne's projection + snomedct:399271003: + text: snomedct:399271003 + meaning: snomedct:399271003 + title: Parasternal short axis view at the papillary muscle level + snomedct:399272005: + text: snomedct:399272005 + meaning: snomedct:399272005 + title: Parietoacanthial projection + snomedct:399273000: + text: snomedct:399273000 + meaning: snomedct:399273000 + title: Sagittal-oblique axial emissive projection + snomedct:399277004: + text: snomedct:399277004 + meaning: snomedct:399277004 + title: Hickey projection + snomedct:399278009: + text: snomedct:399278009 + meaning: snomedct:399278009 + title: Cahoon projection + snomedct:399280003: + text: snomedct:399280003 + meaning: snomedct:399280003 + title: Kasabach projection + snomedct:399281004: + text: snomedct:399281004 + meaning: snomedct:399281004 + title: Fleischner projection + snomedct:399284007: + text: snomedct:399284007 + meaning: snomedct:399284007 + title: Merchant projection + snomedct:399285008: + text: snomedct:399285008 + meaning: snomedct:399285008 + title: Holmblad projection + snomedct:399288005: + text: snomedct:399288005 + meaning: snomedct:399288005 + title: Oblique cranio-caudal projection + snomedct:399290006: + text: snomedct:399290006 + meaning: snomedct:399290006 + title: Schüller projection + snomedct:399292003: + text: snomedct:399292003 + meaning: snomedct:399292003 + title: Stecher projection + snomedct:399296000: + text: snomedct:399296000 + meaning: snomedct:399296000 + title: Taylor projection + snomedct:399297009: + text: snomedct:399297009 + meaning: snomedct:399297009 + title: Right lateral emissive projection + snomedct:399300004: + text: snomedct:399300004 + meaning: snomedct:399300004 + title: Lateral-medial emissive projection + snomedct:399303002: + text: snomedct:399303002 + meaning: snomedct:399303002 + title: Dunlap projection + snomedct:399306005: + text: snomedct:399306005 + meaning: snomedct:399306005 + title: Parasternal short axis view + snomedct:399308006: + text: snomedct:399308006 + meaning: snomedct:399308006 + title: Lindblom projection + snomedct:399310008: + text: snomedct:399310008 + meaning: snomedct:399310008 + title: Subcostal long axis view + snomedct:399311007: + text: snomedct:399311007 + meaning: snomedct:399311007 + title: Grandy projection + snomedct:399312000: + text: snomedct:399312000 + meaning: snomedct:399312000 + title: Antero-posterior oblique projection + snomedct:399313005: + text: snomedct:399313005 + meaning: snomedct:399313005 + title: Swanson projection + snomedct:399316002: + text: snomedct:399316002 + meaning: snomedct:399316002 + title: Parieto-orbital projection + snomedct:399318001: + text: snomedct:399318001 + meaning: snomedct:399318001 + title: Kovacs projection + snomedct:399320003: + text: snomedct:399320003 + meaning: snomedct:399320003 + title: Clements-Nakayama projection + snomedct:399321004: + text: snomedct:399321004 + meaning: snomedct:399321004 + title: Anterior emissive projection + snomedct:399325008: + text: snomedct:399325008 + meaning: snomedct:399325008 + title: Sagittal-oblique axial projection + snomedct:399327000: + text: snomedct:399327000 + meaning: snomedct:399327000 + title: Low-Beer projection + snomedct:399330007: + text: snomedct:399330007 + meaning: snomedct:399330007 + title: Valdini projection + snomedct:399332004: + text: snomedct:399332004 + meaning: snomedct:399332004 + title: Kurzbauer projection + snomedct:399335002: + text: snomedct:399335002 + meaning: snomedct:399335002 + title: Dorsoplantar projection + snomedct:399339008: + text: snomedct:399339008 + meaning: snomedct:399339008 + title: Apical long axis + snomedct:399341009: + text: snomedct:399341009 + meaning: snomedct:399341009 + title: Haas projection + snomedct:399342002: + text: snomedct:399342002 + meaning: snomedct:399342002 + title: Lilienfeld projection + snomedct:399344001: + text: snomedct:399344001 + meaning: snomedct:399344001 + title: Broden projection + snomedct:399348003: + text: snomedct:399348003 + meaning: snomedct:399348003 + title: Antero-posterior projection + snomedct:399349006: + text: snomedct:399349006 + meaning: snomedct:399349006 + title: Stenver's projection + snomedct:399351005: + text: snomedct:399351005 + meaning: snomedct:399351005 + title: Orbito-parietal projection + snomedct:399352003: + text: snomedct:399352003 + meaning: snomedct:399352003 + title: Lateral-medial projection + snomedct:399355001: + text: snomedct:399355001 + meaning: snomedct:399355001 + title: Chausse projection + snomedct:399356000: + text: snomedct:399356000 + meaning: snomedct:399356000 + title: Right anterior oblique projection + snomedct:399358004: + text: snomedct:399358004 + meaning: snomedct:399358004 + title: Caldwell projection + snomedct:399360002: + text: snomedct:399360002 + meaning: snomedct:399360002 + title: Verticosubmental projection + snomedct:399361003: + text: snomedct:399361003 + meaning: snomedct:399361003 + title: Nuclear medicine projection + snomedct:399362005: + text: snomedct:399362005 + meaning: snomedct:399362005 + title: Bertel projection + snomedct:399365007: + text: snomedct:399365007 + meaning: snomedct:399365007 + title: Pearson projection + snomedct:399368009: + text: snomedct:399368009 + meaning: snomedct:399368009 + title: Medio-lateral oblique projection + snomedct:399370000: + text: snomedct:399370000 + meaning: snomedct:399370000 + title: Lysholm projection + snomedct:399371001: + text: snomedct:399371001 + meaning: snomedct:399371001 + title: Parasternal short axis view at the level of the mitral chords + snomedct:399372008: + text: snomedct:399372008 + meaning: snomedct:399372008 + title: Ferguson projection + snomedct:399488007: + text: snomedct:399488007 + meaning: snomedct:399488007 + title: Midline + snomedct:408723005: + text: snomedct:408723005 + meaning: snomedct:408723005 + title: Cranial LAO + snomedct:408724004: + text: snomedct:408724004 + meaning: snomedct:408724004 + title: Caudal LAO + snomedct:408725003: + text: snomedct:408725003 + meaning: snomedct:408725003 + title: Cranial RAO + snomedct:408726002: + text: snomedct:408726002 + meaning: snomedct:408726002 + title: Caudal RAO + snomedct:421610009: + text: snomedct:421610009 + meaning: snomedct:421610009 + title: Bottom + snomedct:421812003: + text: snomedct:421812003 + meaning: snomedct:421812003 + title: Top + snomedct:422534007: + text: snomedct:422534007 + meaning: snomedct:422534007 + title: Rafert-Long projection + snomedct:422568001: + text: snomedct:422568001 + meaning: snomedct:422568001 + title: Moore projection + snomedct:422670003: + text: snomedct:422670003 + meaning: snomedct:422670003 + title: Apple projection + snomedct:422795009: + text: snomedct:422795009 + meaning: snomedct:422795009 + title: Neer projection + snomedct:422861003: + text: snomedct:422861003 + meaning: snomedct:422861003 + title: Burman projection + snomedct:422954003: + text: snomedct:422954003 + meaning: snomedct:422954003 + title: Stryker projection + snomedct:422996004: + text: snomedct:422996004 + meaning: snomedct:422996004 + title: Wolf projection + snomedct:423091003: + text: snomedct:423091003 + meaning: snomedct:423091003 + title: Colcher-Sussman projection + snomedct:423720000: + text: snomedct:423720000 + meaning: snomedct:423720000 + title: Rafer projection + snomedct:424086005: + text: snomedct:424086005 + meaning: snomedct:424086005 + title: Hirtz Modification projection + snomedct:424655003: + text: snomedct:424655003 + meaning: snomedct:424655003 + title: Eraso Modification projection + snomedct:424811006: + text: snomedct:424811006 + meaning: snomedct:424811006 + title: Danelius-Miller projection + snomedct:424962005: + text: snomedct:424962005 + meaning: snomedct:424962005 + title: Fisk projection + snomedct:425030002: + text: snomedct:425030002 + meaning: snomedct:425030002 + title: Kite projection + snomedct:425035007: + text: snomedct:425035007 + meaning: snomedct:425035007 + title: Robert projection + snomedct:425042007: + text: snomedct:425042007 + meaning: snomedct:425042007 + title: Rosenberg projection + snomedct:425157002: + text: snomedct:425157002 + meaning: snomedct:425157002 + title: Folio projection + snomedct:425188003: + text: snomedct:425188003 + meaning: snomedct:425188003 + title: Garth projection + snomedct:441505008: + text: snomedct:441505008 + meaning: snomedct:441505008 + title: Dorsopalmar projection + snomedct:441555000: + text: snomedct:441555000 + meaning: snomedct:441555000 + title: Inferomedial to superolateral oblique view + snomedct:441672003: + text: snomedct:441672003 + meaning: snomedct:441672003 + title: Dorso-ventral projection + snomedct:441753009: + text: snomedct:441753009 + meaning: snomedct:441753009 + title: Mammography view + snomedct:442361004: + text: snomedct:442361004 + meaning: snomedct:442361004 + title: Stereoscopic view + snomedct:442441009: + text: snomedct:442441009 + meaning: snomedct:442441009 + title: Ventro-dorsal projection + snomedct:442580003: + text: snomedct:442580003 + meaning: snomedct:442580003 + title: Axillary tissue mammography view + snomedct:442581004: + text: snomedct:442581004 + meaning: snomedct:442581004 + title: Nipple in profile mammography view + snomedct:442593008: + text: snomedct:442593008 + meaning: snomedct:442593008 + title: Infra-mammary fold mammography view + snomedct:442594002: + text: snomedct:442594002 + meaning: snomedct:442594002 + title: Right stereoscopic view + snomedct:442640004: + text: snomedct:442640004 + meaning: snomedct:442640004 + title: Left stereoscopic view + snomedct:442653001: + text: snomedct:442653001 + meaning: snomedct:442653001 + title: Stereoscopic view incremented from baseline + snomedct:442667005: + text: snomedct:442667005 + meaning: snomedct:442667005 + title: Stereoscopic view decremented from baseline + snomedct:443082005: + text: snomedct:443082005 + meaning: snomedct:443082005 + title: Parasternal long axis view of right ventricular inflow tract + snomedct:443083000: + text: snomedct:443083000 + meaning: snomedct:443083000 + title: Parasternal long axis view of right ventricular outflow tract + snomedct:443100003: + text: snomedct:443100003 + meaning: snomedct:443100003 + title: Subcostal view of cardiac outlets directed anteriorly + snomedct:443160001: + text: snomedct:443160001 + meaning: snomedct:443160001 + title: Subcostal short axis view at papillary muscle level + snomedct:443162009: + text: snomedct:443162009 + meaning: snomedct:443162009 + title: Suprasternal coronal view + snomedct:443163004: + text: snomedct:443163004 + meaning: snomedct:443163004 + title: Suprasternal sagittal view + snomedct:443293000: + text: snomedct:443293000 + meaning: snomedct:443293000 + title: Transgastric short axis view + snomedct:443459002: + text: snomedct:443459002 + meaning: snomedct:443459002 + title: Intramedullary + snomedct:443499004: + text: snomedct:443499004 + meaning: snomedct:443499004 + title: Subcostal short axis view at mitral valve level + snomedct:443500008: + text: snomedct:443500008 + meaning: snomedct:443500008 + title: Subcostal short axis view at venous inflow level + snomedct:443562002: + text: snomedct:443562002 + meaning: snomedct:443562002 + title: Suprasternal long axis view of aortic arch + snomedct:443609003: + text: snomedct:443609003 + meaning: snomedct:443609003 + title: Subcostal short axis view at aortic valve level + snomedct:443640005: + text: snomedct:443640005 + meaning: snomedct:443640005 + title: Subcostal oblique coronal view + snomedct:443662005: + text: snomedct:443662005 + meaning: snomedct:443662005 + title: Transesophageal four chamber view (qualifier value) + snomedct:443698002: + text: snomedct:443698002 + meaning: snomedct:443698002 + title: Transesophageal short axis view (qualifier value) + snomedct:65424008: + text: snomedct:65424008 + meaning: snomedct:65424008 + title: Contiguous + snomedct:66459002: + text: snomedct:66459002 + meaning: snomedct:66459002 + title: Unilateral + snomedct:72906007: + text: snomedct:72906007 + meaning: snomedct:72906007 + title: Common + snomedct:741000124103: + text: snomedct:741000124103 + meaning: snomedct:741000124103 + title: Dorsoventral + snomedct:761000124104: + text: snomedct:761000124104 + meaning: snomedct:761000124104 + title: Dorsolateral + snomedct:771000124106: + text: snomedct:771000124106 + meaning: snomedct:771000124106 + title: Ventrolateral + snomedct:781000124109: + text: snomedct:781000124109 + meaning: snomedct:781000124109 + title: Palmar + reachable_from: + source_ontology: bioregistry:snomedct + source_nodes: + - snomedct:106233006 + - snomedct:272424004 + - snomedct:51440002 + - snomedct:399488007 + - snomedct:24028007 + - snomedct:7771000 + relationship_types: + - rdfs:subClassOf + is_direct: false + EnumStudyDesign: + name: EnumStudyDesign + description: Approaches for collecting data, investigating interventions, and/or + analyzing data. + title: Study Design + from_schema: https://includedcc.org/common-access-model/EnumStudyDesign + permissible_values: + mesh:D003430: + text: mesh:D003430 + description: Studies in which the presence or absence of disease or other + health-related variables are determined in each member of the study population + or in a representative sample at one particular time. This contrasts with + LONGITUDINAL STUDIES which are followed over a period of time. + meaning: mesh:D003430 + title: Cross-Sectional Studies + mesh:D005500: + text: mesh:D005500 + description: Studies in which individuals or populations are followed to assess + the outcome of exposures, procedures, or effects of a characteristic, e.g., + occurrence of disease. + meaning: mesh:D005500 + title: Follow-Up Studies + mesh:D008137: + text: mesh:D008137 + description: Studies in which variables relating to an individual or group + of individuals are assessed over a period of time. + meaning: mesh:D008137 + title: Longitudinal Studies + mesh:D011446: + text: mesh:D011446 + description: Observation of a population for a sufficient number of persons + over a sufficient number of years to generate incidence or mortality rates + subsequent to the selection of the study group. + meaning: mesh:D011446 + title: Prospective Studies + mesh:D012189: + text: mesh:D012189 + description: Studies used to test etiologic hypotheses in which inferences + about an exposure to putative causal factors are derived from data relating + to characteristics of persons under study or to events or experiences in + their past. The essential feature is that some of the persons under study + have the disease or outcome of interest and their characteristics are compared + with those of unaffected persons. + meaning: mesh:D012189 + title: Retrospective Studies + mesh:D015331: + text: mesh:D015331 + description: Studies in which subsets of a defined population are identified. + These groups may or may not be exposed to factors hypothesized to influence + the probability of the occurrence of a particular disease or other outcome. + Cohorts are defined populations which, as a whole, are followed in an attempt + to determine distinguishing subgroup characteristics. + meaning: mesh:D015331 + title: Cohort Studies + mesh:D015528: + text: mesh:D015528 + description: Studies of the number of cases where human immunodeficiency virus + (HIV) is present in a specific population at a designated time. The presence + in a given individual is determined by the finding of HIV antibodies in + the serum (HIV SEROPOSITIVITY). + meaning: mesh:D015528 + title: HIV Seroprevalence + mesh:D016022: + text: mesh:D016022 + description: Comparisons that start with the identification of persons with + the disease or outcome of interest and a control (comparison, referent) + group without the disease or outcome of interest. The relationship of an + attribute is examined by comparing both groups with regard to the frequency + or levels of outcome over time. + meaning: mesh:D016022 + title: Case-Control Studies + mesh:D016036: + text: mesh:D016036 + description: EPIDEMIOLOGIC STUDIES based on the detection through serological + testing of characteristic change in the serum level of specific ANTIBODIES. + Latent subclinical infections and carrier states can thus be detected in + addition to clinically overt cases. + meaning: mesh:D016036 + title: Seroepidemiologic Studies + mesh:D063588: + text: mesh:D063588 + description: Longitudinal study of a nationally representative sample of adolescents + in grades 7-12 in the United States during the 1994-95 school year. The + Add Health cohort has been followed into young adulthood. (from http://www.cpc.unc.edu/projects/addhealth + accessed 08/2012) + meaning: mesh:D063588 + title: National Longitudinal Study of Adolescent Health + mesh:D065186: + text: mesh:D065186 + description: A study that uses observations at multiple time points before + and after an intervention (the interruption), in an attempt to detect whether + the intervention has had an effect significantly greater than any underlying + trend over time. + meaning: mesh:D065186 + title: Interrupted Time Series Analysis + mesh:D065187: + text: mesh:D065187 + description: A study in which observations are made before and after an intervention, + both in a group that receives the intervention and in a control group that + does not. + meaning: mesh:D065187 + title: Controlled Before-After Studies + mesh:D065386: + text: mesh:D065386 + description: A study that compares a group of participants receiving an intervention + with a similar group from the past who did not. + meaning: mesh:D065386 + title: Historically Controlled Study + mesh:D000068397: + text: mesh:D000068397 + description: A work that reports on the results of a research study to evaluate + interventions or exposures on biomedical or health-related outcomes. The + two main types of clinical studies are interventional studies (clinical + trials) and observational studies. While most clinical studies concern humans, + this publication type may be used for clinical veterinary articles meeting + the requisites for humans. + meaning: mesh:D000068397 + title: Clinical Study + mesh:D000073843: + text: mesh:D000073843 + description: Trial that aims to show a new treatment is no better and no worse + than the standard treatment. + meaning: mesh:D000073843 + title: Equivalence Trial + mesh:D000076362: + text: mesh:D000076362 + description: Clinical study in which a prospectively planned opportunity is + included to modify trial designs and hypotheses based on analysis of data + from subjects in the study. + meaning: mesh:D000076362 + title: Adaptive Clinical Trial + mesh:D000077522: + text: mesh:D000077522 + description: A work in which animal participants are assigned to receive one + or more interventions so that researchers can evaluate the interventions + on biomedical or health-related outcomes. The assignments are determined + by the study protocol. + meaning: mesh:D000077522 + title: Clinical Trial, Veterinary + mesh:D000078182: + text: mesh:D000078182 + description: A review of primary literature in health and health policy that + attempts to identify, appraise, and synthesize all the empirical evidence + that meets specified eligibility criteria to answer a given research question. Its + conduct uses explicit methods aimed at minimizing bias in order to produce + more reliable findings regarding the effects of interventions for prevention, + treatment, and rehabilitation that can be used to inform decision making. + meaning: mesh:D000078182 + title: Systematic Review + mesh:D000078323: + text: mesh:D000078323 + description: Reports on studies of the results of a clinical study in which + animal subjects may receive diagnostic, therapeutic, or other types of interventions, + where the investigator does not assign participants to specific interventions. + meaning: mesh:D000078323 + title: Observational Study, Veterinary + mesh:D000078325: + text: mesh:D000078325 + description: The written description of a clinical study. It contains the + study's objectives, design, and methods including subject target and/or + enrollment criteria. It may also present relevant scientific background + and statistical information. + meaning: mesh:D000078325 + title: Clinical Trial Protocol + mesh:D000081262: + text: mesh:D000081262 + description: A work that reports on a clinical trial with animal subjects + that involves at least one test treatment and one control treatment, concurrent + enrollment and follow-up of the test- and control-treated groups, and in + which the treatments to be administered are selected by a random process, + such as the use of a random-numbers table. + meaning: mesh:D000081262 + title: Randomized Controlled Trial, Veterinary + mesh:D000098368: + text: mesh:D000098368 + description: Trials in which participants are intentionally challenged (whether + or not they have been vaccinated) with exposure to an infectious disease + organism. + meaning: mesh:D000098368 + title: Human Challenge Trials + mesh:D000098583: + text: mesh:D000098583 + description: Review to identify knowledge gaps, scope a body of literature, + clarify concepts or to investigate research conduct. + meaning: mesh:D000098583 + title: Scoping Review + mesh:D000099094: + text: mesh:D000099094 + description: Works consisting of meta-analysis of randomized trials in which + estimates of comparative treatment effects are visualized and interpreted + from a network of interventions that may or may not have been evaluated + directly against each other. Common considerations in network meta-analysis + include conceptual and statistical heterogeneity and incoherence. + meaning: mesh:D000099094 + title: Network Meta-Analysis + mesh:D002363: + text: mesh:D002363 + description: Clinical presentations that may be followed by evaluative studies + that eventually lead to a diagnosis. + meaning: mesh:D002363 + title: Case Reports + mesh:D003160: + text: mesh:D003160 + description: Comparison of outcomes, results, responses, etc for different + techniques, therapeutic approaches or other inputs. + meaning: mesh:D003160 + title: Comparative Study + mesh:D016426: + text: mesh:D016426 + description: Work consisting of reports by the United States Office of Research + Integrity, identifying questionable research published in articles or books. + Notification of the questionable data is carried in the NIH Guide for Grants + and Contracts. + meaning: mesh:D016426 + title: Scientific Integrity Review + mesh:D016429: + text: mesh:D016429 + description: Work that consists of a conference of physicians on their observations + of a patient at the bedside, regarding the physical state, laboratory and + other diagnostic findings, clinical manifestations, results of current therapy, + etc. A clinical conference usually ends with a confirmation or correction + of clinical findings by a pathological diagnosis performed by a pathologist. + Clinical conference is often referred to as a clinico-pathological conference. + meaning: mesh:D016429 + title: Clinical Conference + mesh:D016430: + text: mesh:D016430 + description: A work that reports on the results of a clinical study in which + participants are assigned to receive one or more interventions so that researchers + can evaluate the interventions on biomedical or health-related outcomes. + The assignments are determined by the study protocol. Participants may receive + diagnostic, therapeutic, or other types of interventions. For clinical trials + on veterinary animals see CLINICAL TRIAL, VETERINARY. Clinical Trials was + used for both humans and non-humans prior to 2019. + meaning: mesh:D016430 + title: Clinical Trial + mesh:D016446: + text: mesh:D016446 + description: Official statements of the findings or recommendations expressing + the outcome of a meeting convened to evaluate current thought and research + on a subject of interest. + meaning: mesh:D016446 + title: Consensus Development Conference + mesh:D016447: + text: mesh:D016447 + description: Official statements of the finding or recommendations expressing + the outcome from a conference sponsored by NIH. + meaning: mesh:D016447 + title: Consensus Development Conference, NIH + mesh:D016448: + text: mesh:D016448 + description: A work that reports on a study executed by several cooperating + institutions. + meaning: mesh:D016448 + title: Multicenter Study + mesh:D016449: + text: mesh:D016449 + description: A work that reports on a clinical trial that involves at least + one test treatment and one control treatment, concurrent enrollment and + follow-up of the test- and control-treated groups, and in which the treatments + to be administered are selected by a random process, such as the use of + a random-numbers table. + meaning: mesh:D016449 + title: Randomized Controlled Trial + mesh:D017418: + text: mesh:D017418 + description: Works consisting of studies using a quantitative method of combining + the results of independent studies (usually drawn from the published literature) + and synthesizing summaries and conclusions which may be used to evaluate + therapeutic effectiveness, plan new studies, etc. It is often an overview + of clinical trials. It is usually called a meta-analysis by the author or + sponsoring body and should be differentiated from reviews of literature. + meaning: mesh:D017418 + title: Meta-Analysis + mesh:D017426: + text: mesh:D017426 + description: Work that is the report of a pre-planned, usually controlled, + clinical study of the safety and efficacy of diagnostic, therapeutic, or + prophylactic drugs, devices, or techniques based on a small number of healthy + persons and conducted over the period of about a year in either the United + States or a foreign country. + meaning: mesh:D017426 + title: Clinical Trial, Phase I + mesh:D017427: + text: mesh:D017427 + description: Work that is a report of a pre-planned, usually controlled, clinical + study of the safety and efficacy of diagnostic, therapeutic, or prophylactic + drugs, devices, or techniques based on several hundred volunteers, including + a limited number of patients, and conducted over a period of about two years + in either the United States or a foreign country. + meaning: mesh:D017427 + title: Clinical Trial, Phase II + mesh:D017428: + text: mesh:D017428 + description: Work that is a report of a pre-planned, usually controlled, clinical + study of the safety and efficacy of diagnostic, therapeutic, or prophylactic + drugs, devices, or techniques after phase II trials. A large enough group + of patients is studied and closely monitored by physicians for adverse response + to long-term exposure, over a period of about three years in either the + United States or a foreign country. + meaning: mesh:D017428 + title: Clinical Trial, Phase III + mesh:D017429: + text: mesh:D017429 + description: Work that is a report of a planned post-marketing study of diagnostic, + therapeutic, or prophylactic drugs, devices, or techniques that have been + approved for general sale after clinical trials, phases I, II, and III. + These studies, conducted in the United States or a foreign country, often + garner additional data about the safety and efficacy of a product. + meaning: mesh:D017429 + title: Clinical Trial, Phase IV + mesh:D018486: + text: mesh:D018486 + description: Work consisting of reporting using a method of detecting genetic + causes in human traits and genetic factors in behavior using sets of twins. + meaning: mesh:D018486 + title: Twin Study + mesh:D018848: + text: mesh:D018848 + description: A work that reports on a clinical trial involving one or more + test treatments, at least one control treatment, specified outcome measures + for evaluating the studied intervention, and a bias-free method for assigning + patients to the test treatment. The treatment may be drugs, devices, or + procedures studied for diagnostic, therapeutic, or prophylactic effectiveness. + Control measures include placebos, active medicine, no-treatment, dosage + forms and regimens, historical comparisons, etc. When randomization using + mathematical techniques, such as the use of a random numbers table, is employed + to assign patients to test or control treatments, the trial is characterized + as a RANDOMIZED CONTROLLED TRIAL. + meaning: mesh:D018848 + title: Controlled Clinical Trial + mesh:D023361: + text: mesh:D023361 + description: Works consisting of research using processes by which the reliability + and relevance of a procedure for a specific purpose are established. + meaning: mesh:D023361 + title: Validation Study + mesh:D023362: + text: mesh:D023362 + description: Works consisting of studies determining the effectiveness or + utility of processes, personnel, and equipment. + meaning: mesh:D023362 + title: Evaluation Study + mesh:D064888: + text: mesh:D064888 + description: A work that reports on the results of a clinical study in which + participants may receive diagnostic, therapeutic, or other types of interventions, + but the investigator does not assign participants to specific interventions + (as in an interventional study). + meaning: mesh:D064888 + title: Observational Study + mesh:D065007: + text: mesh:D065007 + description: Randomized clinical trials that compare interventions in clinical + settings and which look at a range of effectiveness outcomes and impacts. + meaning: mesh:D065007 + title: Pragmatic Clinical Trial + reachable_from: + source_ontology: bioregistry:mesh + source_nodes: + - mesh:D016021 + - mesh:D052182 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: false + EnumSubjectType: + name: EnumSubjectType + description: Types of Subject entities + from_schema: https://includedcc.org/common-access-model/EnumSubjectType + permissible_values: + CAMO:0000024: + text: CAMO:0000024 + description: Study participant with consent, assent, or waiver of consent. + title: Participant + aliases: + - participant + CAMO:0000025: + text: CAMO:0000025 + description: An individual not directly participating in a study, eg, the + subject of a reported family history. + title: Non-Participant + aliases: + - non_participant + CAMO:0000026: + text: CAMO:0000026 + title: Cell Line + aliases: + - cell_line + CAMO:0000027: + text: CAMO:0000027 + title: Animal Model + aliases: + - animal_model + CAMO:0000028: + text: CAMO:0000028 + description: A group of entities or things being assessed as a whole. + title: Group + aliases: + - group + reachable_from: + source_ontology: camo + source_nodes: + - CAMO:0000023 + relationship_types: + - rdfs:subClassOf + is_direct: false + include_self: true + EnumUnknown: + name: EnumUnknown + description: Base enumeration providing an Unknown option. + from_schema: https://includedcc.org/common-access-model/EnumUnknown + permissible_values: + snomedct:261665006: + text: snomedct:261665006 + title: Unknown + aliases: + - unknown + EnumUnknownOther: + name: EnumUnknownOther + description: Base enumeration providing Unknown and Other options. + from_schema: https://includedcc.org/common-access-model/EnumUnknownOther + permissible_values: + snomedct:261665006: + text: snomedct:261665006 + title: Unknown + aliases: + - unknown + snomedct:74964007: + text: snomedct:74964007 + title: Other + aliases: + - other + EnumVitalStatus: + name: EnumVitalStatus + description: Descriptions of a Subject's vital status + from_schema: https://includedcc.org/common-access-model/EnumVitalStatus + permissible_values: + snomedct:419099009: + text: snomedct:419099009 + title: Dead + aliases: + - dead + snomedct:438949009: + text: snomedct:438949009 + title: Alive + aliases: + - alive +slots: + study_id: + name: study_id + description: INCLUDE Global ID for the study + title: Study ID + from_schema: https://includedcc.org/common-access-model + range: Study + multivalued: false + access_policy_id: + name: access_policy_id + description: Global identifier for the access policy that applies to this row + of data. + title: Access Policy ID + from_schema: https://includedcc.org/common-access-model + range: AccessPolicy + data_use_accession: + name: data_use_accession + description: Accession used to provision access to the record, eg, a dbGaP phsID. + title: Data Use Accession + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + data_use_permission: + name: data_use_permission + description: Broad category of restrictions on data use. + title: Data Use Permission + from_schema: https://includedcc.org/common-access-model + range: EnumDataUsePermission + required: true + data_use_modifier: + name: data_use_modifier + description: Additional modifiers that limit data use. + title: Data Use Modifier + from_schema: https://includedcc.org/common-access-model + range: EnumDataUseModifier + disease_limitation: + name: disease_limitation + description: If the access is limited to a specific disease purpose, it is specified + here. + title: Data Use Disease Limitation + from_schema: https://includedcc.org/common-access-model + range: string + access_description: + name: access_description + description: Any additional information to support access requests. + title: Access Description + from_schema: https://includedcc.org/common-access-model + range: string + do_id: + name: do_id + description: Digital Object Identifier (DOI) for this Record. + title: DOI + from_schema: https://includedcc.org/common-access-model + range: DOI + multivalued: false + subject_id: + name: subject_id + description: INCLUDE Global ID for the Subject + title: Study ID + from_schema: https://includedcc.org/common-access-model + range: Subject + multivalued: false + assertion_id: + name: assertion_id + description: INCLUDE Global ID for the Assertion + title: Assertion ID + from_schema: https://includedcc.org/common-access-model + range: SubjectAssertion + multivalued: false + external_id: + name: external_id + description: Other identifiers for this entity, eg, from the submitting study + or in systems like dbGaP + title: External Identifiers + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + required: false + multivalued: true + parent_study: + name: parent_study + description: The parent study for this study, if it is a nested study. + title: Parent Study + from_schema: https://includedcc.org/common-access-model + range: Study + required: false + multivalued: false + funding_source: + name: funding_source + description: The funding source(s) of the study. + title: Funding Source + from_schema: https://includedcc.org/common-access-model + range: string + required: false + multivalued: true + principal_investigator: + name: principal_investigator + description: The Principal Investigator(s) responsible for the study. + title: Principal Investigator + from_schema: https://includedcc.org/common-access-model + range: Investigator + required: true + multivalued: true + study_title: + name: study_title + description: Full Study Title + from_schema: https://includedcc.org/common-access-model + range: string + required: true + multivalued: false + study_code: + name: study_code + description: Unique identifier for the study (generally a short acronym) + title: Study Code + from_schema: https://includedcc.org/common-access-model + range: string + required: true + study_short_name: + name: study_short_name + description: Short name for the study + title: Study Code + from_schema: https://includedcc.org/common-access-model + range: string + required: false + investigator_title: + name: investigator_title + description: The title of the Investigator, eg, "Assistant Professor" + title: Investigator Title + from_schema: https://includedcc.org/common-access-model + range: string + required: false + name: + name: name + description: Name of the entity. + title: Name + from_schema: https://includedcc.org/common-access-model + range: string + required: false + email: + name: email + description: An email address to reach the entity. + title: Email Address + from_schema: https://includedcc.org/common-access-model + range: string + required: false + institution: + name: institution + description: Name of the institution this record is associated with. + title: Institution + from_schema: https://includedcc.org/common-access-model + range: string + required: false + program: + name: program + description: Funding source(s) for the study + title: Program + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + required: true + multivalued: true + any_of: + - range: uriorcurie + - range: EnumProgram + study_description: + name: study_description + description: Brief description of the study (2-4 sentences) + title: Study Description + from_schema: https://includedcc.org/common-access-model + range: string + required: true + website: + name: website + description: Website with more information about this entity. + title: Website + from_schema: https://includedcc.org/common-access-model + range: uri + contact: + name: contact + description: The individual to contact with questions about this record. + title: Contact Person + from_schema: https://includedcc.org/common-access-model + range: Investigator + required: true + multivalued: true + vbr_id: + name: vbr_id + description: Information about the study's Virtual Biorepository, if participating + title: Virtual Biorepository + from_schema: https://includedcc.org/common-access-model + range: VirtualBiorepository + vbr_readme: + name: vbr_readme + description: Instructions for contacting or requesting samples from Virtual Biorepository, + if participating + title: VBR Readme + from_schema: https://includedcc.org/common-access-model + range: string + research_domain: + name: research_domain + description: Main research domain(s) of the study + from_schema: https://includedcc.org/common-access-model + range: Concept + required: true + multivalued: true + any_of: + - range: Concept + - range: EnumResearchDomain + participant_lifespan_stage: + name: participant_lifespan_stage + description: Focus age group(s) of the study population + title: Participant Lifespan Stage + from_schema: https://includedcc.org/common-access-model + range: EnumParticipantLifespanStage + required: true + multivalued: true + selection_criteria: + name: selection_criteria + description: Brief description of inclusion and/or exclusion criteria for the + study + title: Selection Criteria + from_schema: https://includedcc.org/common-access-model + range: string + study_design: + name: study_design + description: Overall design of study, including whether it is longitudinal and + whether family members/unrelated controls are also enrolled + title: Study Design + from_schema: https://includedcc.org/common-access-model + range: Concept + required: true + multivalued: true + any_of: + - range: Concept + - range: EnumStudyDesign + data_category: + name: data_category + description: General category of data in this Record (e.g. Clinical, Genomics, + etc) + title: Data Category + from_schema: https://includedcc.org/common-access-model + range: Concept + any_of: + - range: Concept + - range: EnumDataCategory + clinical_data_source_type: + name: clinical_data_source_type + description: Source(s) of data collected from study participants + title: Clinical Data Source Type + from_schema: https://includedcc.org/common-access-model + range: EnumDataSourceType + required: true + multivalued: true + publication: + name: publication + description: Publications associated with this Record. + title: Publication + from_schema: https://includedcc.org/common-access-model + range: Publication + multivalued: true + expected_number_of_participants: + name: expected_number_of_participants + description: Total expected number of participants to be recruited. + title: Expected Number of Participants + from_schema: https://includedcc.org/common-access-model + range: integer + required: true + actual_number_of_participants: + name: actual_number_of_participants + description: Total participants included at this time. + title: Actual Number of Participants + from_schema: https://includedcc.org/common-access-model + range: integer + required: true + acknowledgments: + name: acknowledgments + description: Funding statement and acknowledgments for this study + title: Acknowledgments + from_schema: https://includedcc.org/common-access-model + range: string + citation_statement: + name: citation_statement + description: Statement that secondary data users should use to acknowledge use + of this study or dataset. E.g., "The results analyzed and + here are based in whole or in part upon data generated by the INCLUDE (INvestigation + of Co-occurring conditions across the Lifespan to Understand Down syndromeE) + Project , and were accessed + from the INCLUDE Data Hub and ." + title: Citation Statement + from_schema: https://includedcc.org/common-access-model + range: string + bibliographic_reference: + name: bibliographic_reference + description: Text use to reference this Record. + title: Bibiliographic Reference + from_schema: https://includedcc.org/common-access-model + range: string + organism_type: + name: organism_type + description: Organism Type, typically from NCBITaxon. + title: Organism Type + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + any_of: + - range: uriorcurie + - range: EnumOrganism + subject_type: + name: subject_type + description: Type of entity this record represents + title: Subject Type + from_schema: https://includedcc.org/common-access-model + range: Concept + required: true + any_of: + - range: EnumSubjectType + - range: EnumUnknownOther + sex: + name: sex + description: Sex of Participant + title: Sex + from_schema: https://includedcc.org/common-access-model + range: Concept + required: true + any_of: + - range: EnumSex + - range: EnumUnknownOther + race: + name: race + description: Race of Participant + title: Race + from_schema: https://includedcc.org/common-access-model + range: Concept + required: true + multivalued: true + any_of: + - range: EnumRace + - range: EnumUnknownOther + ethnicity: + name: ethnicity + description: Ethnicity of Participant + title: Ethnicity + from_schema: https://includedcc.org/common-access-model + range: Concept + required: true + any_of: + - range: EnumEthnicity + - range: EnumUnknownOther + age_at_first_engagement: + name: age_at_first_engagement + description: Age in days of Participant at first recorded study event (enrollment, + visit, observation, sample collection, survey completion, etc.). Age at enrollment + is preferred, if available. + title: Age at First Participant Engagement + from_schema: https://includedcc.org/common-access-model + range: integer + minimum_value: -365 + maximum_value: 32507 + unit: + ucum_code: d + vital_status: + name: vital_status + description: Whether participant is alive or dead + title: Vital Status + from_schema: https://includedcc.org/common-access-model + range: Concept + any_of: + - range: EnumVitalStatus + - range: EnumUnknown + age_at_last_vital_status: + name: age_at_last_vital_status + description: Age in days when participant's vital status was last recorded + title: Age at Last Vital Status + from_schema: https://includedcc.org/common-access-model + range: integer + minimum_value: -365 + maximum_value: 32507 + unit: + ucum_code: d + family_id: + name: family_id + description: Global ID for the Family + title: Family ID + from_schema: https://includedcc.org/common-access-model + range: Family + family_type: + name: family_type + description: Describes the 'type' of study family, eg, trio. + from_schema: https://includedcc.org/common-access-model + range: EnumFamilyType + family_description: + name: family_description + description: Free text describing the study family, such as potential inheritance + or details about consanguinity + from_schema: https://includedcc.org/common-access-model + range: string + consanguinity: + name: consanguinity + description: Is there known or suspected consanguinity in this study family? + from_schema: https://includedcc.org/common-access-model + range: EnumPresentAbsent + family_study_focus: + name: family_study_focus + description: The specific focus of the investigation, eg, a condition. + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + family_relationship_id: + name: family_relationship_id + description: Global ID for the Family Relationship + title: Family Relationship ID + from_schema: https://includedcc.org/common-access-model + range: FamilyRelationship + family_member_id: + name: family_member_id + description: The family member Subject who is the relationship "subject". + from_schema: https://includedcc.org/common-access-model + range: Subject + required: true + inlined: false + relation: + name: relation + description: Code definting the relationship predicate. Relationship of the "Family + Member" to the "Subject", eg, mother of. Ideally uses KIN ontology. + from_schema: https://includedcc.org/common-access-model + range: Concept + required: true + any_of: + - range: EnumFamilyRelation + - range: EnumUnknown + family_membership_id: + name: family_membership_id + description: ID for the Family Relationship + title: Family Relationship ID + from_schema: https://includedcc.org/common-access-model + range: FamilyMembership + family_role: + name: family_role + description: The "role" of this individual in this family. Could include terms + like "proband", "mother", etc. + from_schema: https://includedcc.org/common-access-model + range: Concept + any_of: + - range: Concept + - range: EnumFamilyRole + asserter_type: + name: asserter_type + description: The original asserter of this information + title: Asserter Type + from_schema: https://includedcc.org/common-access-model + range: EnumAsserterType + assertion_source_type: + name: assertion_source_type + description: The source of this assertion from the original data + title: Assertion Source + from_schema: https://includedcc.org/common-access-model + range: EnumDataSourceType + age_at_assertion: + name: age_at_assertion + description: The age in days of the Subject when the assertion was made. + title: Age at assertion + from_schema: https://includedcc.org/common-access-model + range: integer + unit: + ucum_code: d + age_at_event: + name: age_at_event + description: The age in days of the Subject at the time point which the assertion + describes, eg, age of onset or when a measurement was performed. + title: Age at event + from_schema: https://includedcc.org/common-access-model + range: integer + unit: + ucum_code: d + age_at_resolution: + name: age_at_resolution + description: The age in days of the Subject when the asserted state was resolved. + title: Age at resolution + from_schema: https://includedcc.org/common-access-model + range: integer + unit: + ucum_code: d + concept: + name: concept + description: The structured term defining the meaning of the assertion. + title: Concept + from_schema: https://includedcc.org/common-access-model + range: Concept + multivalued: true + concept_curie: + name: concept_curie + description: The standardized curie for the term. + title: Concept Curie + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + display: + name: display + description: The friendly display string of the coded term. + title: Display String + from_schema: https://includedcc.org/common-access-model + range: string + concept_source: + name: concept_source + description: The source text yielding the standardized concept. + title: Concept Source Text + from_schema: https://includedcc.org/common-access-model + range: string + value_concept: + name: value_concept + description: The structured term defining the value of the assertion. + title: Value concept + from_schema: https://includedcc.org/common-access-model + range: Concept + multivalued: true + any_of: + - range: Concept + - range: EnumPresentAbsent + value_number: + name: value_number + description: The numeric value of the assertion. + title: Value Number + from_schema: https://includedcc.org/common-access-model + range: float + value_source: + name: value_source + description: The source text yielding the value. + title: Value Source Text + from_schema: https://includedcc.org/common-access-model + range: string + value_unit: + name: value_unit + description: The structured term defining the units of the value. + title: Value Units + from_schema: https://includedcc.org/common-access-model + range: Concept + value_unit_source: + name: value_unit_source + description: The source text yielding the value's units. + title: Value Units Source Text + from_schema: https://includedcc.org/common-access-model + range: string + sample_id: + name: sample_id + description: The unique identifier for this Sample. + title: Sample ID + from_schema: https://includedcc.org/common-access-model + range: Sample + parent_sample_id: + name: parent_sample_id + description: Sample from which this sample is derived + title: Parent Sample ID + from_schema: https://includedcc.org/common-access-model + range: Sample + inlined: false + biospecimen_collection_id: + name: biospecimen_collection_id + description: Unique identifier for this Biospecimen Collection. + title: Biospecimen Collection ID + from_schema: https://includedcc.org/common-access-model + range: BiospecimenCollection + aliquot_id: + name: aliquot_id + description: Unique identifier for an Aliquot. + title: Aliquot ID + from_schema: https://includedcc.org/common-access-model + range: Aliquot + sample_type: + name: sample_type + description: Type of material of which this Sample is comprised. UBERON is recommended. + title: Sample Type + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + required: true + processing: + name: processing + description: Processing that was applied to the Parent Sample or from the Biospecimen + Collection that yielded this distinct sample. OBI is recommended. + title: Sample Processing + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + multivalued: true + availability_status: + name: availability_status + description: Can this Sample be requested for further analysis? + title: Sample Availability + from_schema: https://includedcc.org/common-access-model + range: EnumAvailabilityStatus + storage_method: + name: storage_method + description: Sample storage method, eg, Frozen or with additives. OBI may be suitable, + or ChEBI for additives. + title: Sample Storage Method + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + multivalued: true + quantity_number: + name: quantity_number + description: The total quantity of the specimen + title: Quantity + from_schema: https://includedcc.org/common-access-model + range: float + quantity_unit: + name: quantity_unit + description: The structured term defining the units of the quantity. + title: Quantity Units + from_schema: https://includedcc.org/common-access-model + range: Concept + concentration_number: + name: concentration_number + description: What is the concentration of the analyte in the Aliquot? + title: Concentration + from_schema: https://includedcc.org/common-access-model + range: float + concentration_unit: + name: concentration_unit + description: Units associated with the concentration of the analyte in the Aliquot. + title: Concentration Units + from_schema: https://includedcc.org/common-access-model + range: Concept + age_at_collection: + name: age_at_collection + description: The age at which this biospecimen was collected in decimal years. + title: Age at Biospecimen Collection + from_schema: https://includedcc.org/common-access-model + range: float + unit: + ucum_code: a + method: + name: method + description: The approach used to collect the biospecimen. + title: Biospecimen Collection Method + from_schema: https://includedcc.org/common-access-model + range: EnumSampleCollectionMethod + site: + name: site + description: The location of the specimen collection. + title: Biospecimen Collection Site + from_schema: https://includedcc.org/common-access-model + range: Concept + any_of: + - range: Concept + - range: EnumSite + spatial_qualifier: + name: spatial_qualifier + description: Qualifier that further refine the specific location of biospecimen + collection + title: Spatial Qualifier + from_schema: https://includedcc.org/common-access-model + range: Concept + any_of: + - range: Concept + - range: EnumSpatialQualifiers + laterality: + name: laterality + description: Laterality that further refine the specific location of biospecimen + collection + title: Location Laterality + from_schema: https://includedcc.org/common-access-model + range: Concept + any_of: + - range: Concept + - range: EnumLaterality + encounter_id: + name: encounter_id + description: Unique identifier for this Encounter. + title: Encounter ID + from_schema: https://includedcc.org/common-access-model + range: Encounter + description: + name: description + description: Description for this entity. + title: Description + from_schema: https://includedcc.org/common-access-model + range: string + encounter_definition_id: + name: encounter_definition_id + description: Unique identifier for this Encounter Definition. + title: Encounter Definition ID + from_schema: https://includedcc.org/common-access-model + range: EncounterDefinition + activity_definition_id: + name: activity_definition_id + description: Unique identifier for this Activity Definition. + title: Activity Definition ID + from_schema: https://includedcc.org/common-access-model + range: ActivityDefinition + file_id: + name: file_id + description: Unique identifier for this File. + title: File ID + from_schema: https://includedcc.org/common-access-model + range: File + filename: + name: filename + description: The name of the file. + title: Filename + from_schema: https://includedcc.org/common-access-model + range: string + format: + name: format + description: The format of the file. + title: File Format + from_schema: https://includedcc.org/common-access-model + range: EnumEDAMFormats + file_extension: + name: file_extension + description: Typically a 3-4 letter code at the end of a filename that identifies + the file format. Empty string for no extension. + title: File Extension + from_schema: https://includedcc.org/common-access-model + range: string + required: true + data_type: + name: data_type + description: The type of data within this file. + title: Data Type + from_schema: https://includedcc.org/common-access-model + range: EnumEDAMDataTypes + size: + name: size + description: Size of the file, in Bytes. May require BigInt or similar. + title: File Size + from_schema: https://includedcc.org/common-access-model + range: integer + unit: + ucum_code: By + internal_uri: + name: internal_uri + description: URI/URL for internal access to the data. May be temporary. + title: Internal Staging Location + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + release_uri: + name: release_uri + description: URI/URL for controlled or open access to the data. + title: Release Location + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + drs_uri: + name: drs_uri + description: DRS location to access the data. + title: DRS URI + from_schema: https://includedcc.org/common-access-model + range: uriorcurie + storage_class: + name: storage_class + description: Storage class of the object, reflecting cost and access characteristics. + title: Storage Class + from_schema: https://includedcc.org/common-access-model + range: string + availability: + name: availability + description: Is or was this file available to users? + title: File Availability + from_schema: https://includedcc.org/common-access-model + range: EnumAvailabilityStatus + hash: + name: hash + description: File hash information + title: File Hash + from_schema: https://includedcc.org/common-access-model + range: FileHash + multivalued: true + hash_type: + name: hash_type + description: The type of file hash, eg, md5 + title: File Hash Type + from_schema: https://includedcc.org/common-access-model + range: EnumFileHashType + hash_value: + name: hash_value + description: The value of the file hash + title: File Hash Value + from_schema: https://includedcc.org/common-access-model + range: string + assay_id: + name: assay_id + description: The unique identifier for the Assay. + title: Assay ID + from_schema: https://includedcc.org/common-access-model + range: Assay + assay_type: + name: assay_type + description: The type of assay performed. + title: Assay Type + from_schema: https://includedcc.org/common-access-model + range: EnumAssayType + assay_source: + name: assay_source + description: The original description of the Assay performed. + title: Assay Source Text + from_schema: https://includedcc.org/common-access-model + range: string + dataset_id: + name: dataset_id + description: Unique identifier for a Dataset. + title: Dataset ID + from_schema: https://includedcc.org/common-access-model + range: Dataset + data_collection_start: + name: data_collection_start + description: The date that data collection started. May include only a year. + title: Data Collection Start + from_schema: https://includedcc.org/common-access-model + range: string + data_collection_end: + name: data_collection_end + description: The date that data collection started. May include only a year. + title: Data Collection End + from_schema: https://includedcc.org/common-access-model + range: string +classes: + Any: + name: Any + from_schema: https://includedcc.org/common-access-model + class_uri: linkml:Any + Record: + name: Record + description: One row / entity within the database + title: Record + from_schema: https://includedcc.org/common-access-model + abstract: true + slots: + - external_id + - access_policy_id + - study_id + AccessPolicy: + name: AccessPolicy + description: The access policy that describes the controls around use of data + title: Access Policy + from_schema: https://includedcc.org/common-access-model + slots: + - access_policy_id + - data_use_accession + - data_use_permission + - data_use_modifier + - disease_limitation + - access_description + - website + slot_usage: + access_policy_id: + name: access_policy_id + identifier: true + range: coGlobalID + required: true + Study: + name: Study + description: Study Metadata + title: Research Study + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - parent_study + - study_title + - study_code + - study_short_name + - program + - funding_source + - principal_investigator + - contact + - study_description + - website + - publication + - acknowledgments + - citation_statement + - do_id + slot_usage: + study_id: + name: study_id + identifier: true + range: sdGlobalID + required: true + StudyMetadata: + name: StudyMetadata + description: Additional features about studies that may not apply to all studies + title: Study Metadata + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - study_id + - participant_lifespan_stage + - selection_criteria + - study_design + - clinical_data_source_type + - data_category + - vbr_id + - research_domain + - expected_number_of_participants + - actual_number_of_participants + slot_usage: + study_id: + name: study_id + identifier: true + required: true + data_category: + name: data_category + required: true + multivalued: true + VirtualBiorepository: + name: VirtualBiorepository + description: An organization that can provide access to specimen for further analysis. + title: Virtual BioRepository (VBR) + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - vbr_id + - name + - institution + - contact + - website + - vbr_readme + slot_usage: + vbr_id: + name: vbr_id + identifier: true + range: orGlobalID + required: true + DOI: + name: DOI + description: A DOI is a permanent reference with metadata about a digital object. + title: Digital Object Identifier (DOI) + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - do_id + - bibliographic_reference + slot_usage: + do_id: + name: do_id + identifier: true + range: string + required: true + Investigator: + name: Investigator + description: An individual who made contributions to the collection, analysis, + or sharing of data. + title: Investigator + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - name + - institution + - investigator_title + - email + Publication: + name: Publication + description: Information about a specific publication. + title: Publication + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - bibliographic_reference + - website + Subject: + name: Subject + description: This entity is the subject about which data or references are recorded. + This includes the idea of a human participant in a study, a cell line, an animal + model, or any other similar entity. + title: Subject + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - subject_id + - subject_type + - organism_type + slot_usage: + subject_id: + name: subject_id + identifier: true + range: ptGlobalID + required: true + Demographics: + name: Demographics + description: Basic participant demographics summary + title: Demographics + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - subject_id + - sex + - race + - ethnicity + - age_at_last_vital_status + - vital_status + - age_at_first_engagement + slot_usage: + subject_id: + name: subject_id + identifier: true + required: true + Family: + name: Family + description: A group of individuals of some relation who are grouped together + in a study. + title: Family + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - family_id + - family_type + - family_description + - consanguinity + - family_study_focus + slot_usage: + family_id: + name: family_id + identifier: true + range: grGlobalID + required: true + FamilyRelationship: + name: FamilyRelationship + description: A relationship between two Subjects. Directed as follows + + title: Family Member Relationship + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - family_relationship_id + - family_member_id + - relation + - subject_id + slot_usage: + family_relationship_id: + name: family_relationship_id + identifier: true + range: fmGlobalID + required: true + subject_id: + name: subject_id + description: The family member Subject who is the relationship "object". + required: true + FamilyMembership: + name: FamilyMembership + description: Designates a Subject as a member of a family with a specified role. + title: Family Membership + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - family_membership_id + - family_id + - subject_id + - family_role + slot_usage: + family_membership_id: + name: family_membership_id + identifier: true + range: string + required: true + family_id: + name: family_id + required: true + subject_id: + name: subject_id + required: true + SubjectAssertion: + name: SubjectAssertion + description: Assertion about a particular Subject. May include Conditions, Measurements, + etc. + title: Subject Assertion + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - assertion_id + - subject_id + - encounter_id + - asserter_type + - assertion_source_type + - age_at_assertion + - age_at_event + - age_at_resolution + - concept + - concept_source + - value_concept + - value_number + - value_source + - value_unit + - value_unit_source + slot_usage: + assertion_id: + name: assertion_id + identifier: true + range: string + required: true + any_of: + - range: obGlobalID + - range: deGlobalID + - range: msGlobalID + Concept: + name: Concept + description: A standardized concept with display information. + title: Concept + from_schema: https://includedcc.org/common-access-model + slots: + - concept_curie + - display + slot_usage: + concept_curie: + name: concept_curie + identifier: true + required: true + Sample: + name: Sample + description: A functionally equivalent specimen taken from a participant or processed + from such a sample. + title: Sample + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - sample_id + - biospecimen_collection_id + - parent_sample_id + - sample_type + - processing + - availability_status + - storage_method + - quantity_number + - quantity_unit + slot_usage: + sample_id: + name: sample_id + identifier: true + range: bsGlobalID + required: true + biospecimen_collection_id: + name: biospecimen_collection_id + description: Biospecimen Collection during which this sample was generated. + BiospecimenCollection: + name: BiospecimenCollection + description: A biospecimen collection event which yields one or more Samples. + title: BiospecimenCollection + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - biospecimen_collection_id + - age_at_collection + - method + - site + - spatial_qualifier + - laterality + - encounter_id + slot_usage: + biospecimen_collection_id: + name: biospecimen_collection_id + identifier: true + range: string + required: true + Aliquot: + name: Aliquot + description: A specific tube or amount of a biospecimen associated with a Sample. + title: Aliquot + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - aliquot_id + - sample_id + - availability_status + - quantity_number + - quantity_unit + - concentration_number + - concentration_unit + slot_usage: + aliquot_id: + name: aliquot_id + identifier: true + range: string + required: true + Encounter: + name: Encounter + description: An event at which data was collected about a participant, an intervention + was made, or information about a participant was recorded. + title: Participant Encounter + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - encounter_id + - subject_id + - encounter_definition_id + - age_at_event + slot_usage: + encounter_id: + name: encounter_id + identifier: true + range: enGlobalID + required: true + EncounterDefinition: + name: EncounterDefinition + description: A definition of an encounter type in this study, ie, an event at + which data was collected about a participant, an intervention was made, or information + about a participant was recorded. This may be something planned by a study or + a type of data collection. + title: Encounter Definition + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - encounter_definition_id + - name + - description + - activity_definition_id + slot_usage: + encounter_definition_id: + name: encounter_definition_id + identifier: true + range: pdGlobalID + required: true + activity_definition_id: + name: activity_definition_id + multivalued: true + ActivityDefinition: + name: ActivityDefinition + description: A definition of an activity in this study, eg, a biospecimen collection, + assay, intervention, survey, or assessment. + title: Activity Definition + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - activity_definition_id + - name + - description + slot_usage: + activity_definition_id: + name: activity_definition_id + identifier: true + range: adGlobalID + required: true + File: + name: File + description: File + title: File + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - file_id + - subject_id + - sample_id + - filename + - format + - file_extension + - data_category + - data_type + - format + - size + - internal_uri + - release_uri + - drs_uri + - storage_class + - hash + - availability + slot_usage: + file_id: + name: file_id + identifier: true + range: drGlobalID + required: true + subject_id: + name: subject_id + multivalued: true + sample_id: + name: sample_id + multivalued: true + FileHash: + name: FileHash + description: Type and value of a file content hash. + title: File Hash + from_schema: https://includedcc.org/common-access-model + slots: + - hash_type + - hash_value + Assay: + name: Assay + description: A specific assay that was performed on given subject(s) or sample(s). + title: Assay + from_schema: https://includedcc.org/common-access-model + mixins: + - Record + slots: + - assay_id + - subject_id + - sample_id + - file_id + - assay_type + - assay_source + - activity_definition_id + slot_usage: + assay_id: + name: assay_id + identifier: true + range: diGlobalID + required: true + file_id: + name: file_id + multivalued: true + subject_id: + name: subject_id + multivalued: true + sample_id: + name: sample_id + multivalued: true + assay_type: + name: assay_type + required: true + Dataset: + name: Dataset + description: Set of files grouped together for release. + title: Dataset + from_schema: https://includedcc.org/common-access-model + slots: + - dataset_id + - name + - description + - do_id + - file_id + - publication + - data_collection_start + - data_collection_end + slot_usage: + dataset_id: + name: dataset_id + identifier: true + range: lsGlobalID + required: true + file_id: + name: file_id + description: The list of files comprising this dataset. + multivalued: true +source_file: src/common_access_model/schema/common_access_model.yaml diff --git 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insertions(+), 11 deletions(-) delete mode 120000 src/include_access_model/schema/upstream-models/common_access_model.yaml diff --git a/COLLABORATORS.md b/COLLABORATORS.md index f2f9c05..369c165 100644 --- a/COLLABORATORS.md +++ b/COLLABORATORS.md @@ -1,4 +1,4 @@ -## Welcome to the Kids First Access Model 🚀 +## Welcome to the INCLUDE Access Model 🚀 This repository serves as a downstream model designed to specialize the [Common Access Model](https://github.com/include-dcc/common-access-model). A @@ -6,7 +6,7 @@ pinned version of this upstream model is captured in src/kf_access_model/schema/upstream-models/common_access_model*.yaml. The purpose of this model is to build out a program-specific extension (or -profile) by importing the core elements and layering the Kids First unique data +profile) by importing the core elements and layering the INCLUDE unique data requirements on top. ## Key Integration Guidelines diff --git a/mkdocs.yml b/mkdocs.yml index ef626b2..19f789e 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -21,6 +21,33 @@ plugins: # scripts: # - gen_pages.py # or any other name or path + +markdown_extensions: + - pymdownx.superfences: + # https://mkdocs-mermaid2.readthedocs.io/en/latest/superfences + # custom code highlighting rules + custom_fences: + - name: mermaid + # disable code highlighting to display diagrams + format: !!python/name:pymdownx.superfences.fence_code_format + class: mermaid + # https://facelessuser.github.io/pymdown-extensions/extensions/magiclink/ + # auto-link HTML, FTP, and email links + - pymdownx.magiclink + # https://squidfunk.github.io/mkdocs-material/setup/extensions/python-markdown/#admonition + # support for call-outs + - admonition + # https://squidfunk.github.io/mkdocs-material/setup/extensions/python-markdown/#tables + # create tables + - tables + # https://squidfunk.github.io/mkdocs-material/setup/extensions/python-markdown/#attribute-lists + # enables use of HTML attributes and CSS classes to applicable elements + - attr_list + # https://squidfunk.github.io/mkdocs-material/setup/extensions/python-markdown/#markdown-in-html + # write markdown inside of HTML + - md_in_html + + watch: - src/include_access_model/schema diff --git a/project.justfile b/project.justfile index 80989ca..8ddfc31 100644 --- a/project.justfile +++ b/project.justfile @@ -25,4 +25,4 @@ gen-dbtmodel: [group('model development')] update-cam: - uv run update-cam -d src/include_access_model/schema/upstream-models + uv run update-cam -l src/include_access_model/schema/include_access_model.yaml -d src/include_access_model/schema/upstream-models diff --git a/pyproject.toml b/pyproject.toml index a5ce4ed..1aafbff 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -91,3 +91,4 @@ extend-exclude = [ [tool.uv.sources] the-caddie = { git = "https://github.com/carrollaboratory/the-caddie" } +#the-caddie = { path = "/home/torstees/dev/the-caddie" } diff --git a/src/include_access_model/schema/include_access_model.yaml b/src/include_access_model/schema/include_access_model.yaml index df50d5f..be987b8 100644 --- a/src/include_access_model/schema/include_access_model.yaml +++ b/src/include_access_model/schema/include_access_model.yaml @@ -1,11 +1,10 @@ ---- id: https://includedcc.org/include-access-model name: include-access-model title: INCLUDE DCC Access Model description: LinkML Schema for the internal INCLUDE DCC Access Model license: MIT see_also: - - https://includedcc.github.io/include-access-model +- https://includedcc.github.io/include-access-model prefixes: includedcc: https://includedcc.org/include-access-model/ @@ -85,15 +84,14 @@ default_prefix: includedcc default_range: linkml:string imports: - - upstream-models/common_access_model - +- upstream-models/common_access_model-0.0.7 classes: IncludeParticipant: title: INCLUDE Participant description: Information specific to INCLUDE participants is_a: Demographics slots: - - down_syndrome_status + - down_syndrome_status slots: down_syndrome_status: diff --git a/src/include_access_model/schema/upstream-models/common_access_model.yaml b/src/include_access_model/schema/upstream-models/common_access_model.yaml deleted file mode 120000 index 3336df0..0000000 --- a/src/include_access_model/schema/upstream-models/common_access_model.yaml +++ /dev/null @@ -1 +0,0 @@ -common_access_model-0.0.7.yaml \ No newline at end of file diff --git a/uv.lock b/uv.lock index 32f88b6..027ce65 100644 --- a/uv.lock +++ b/uv.lock @@ -499,6 +499,15 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/84/d0/205d54408c08b13550c733c4b85429e7ead111c7f0014309637425520a9a/deprecated-1.3.1-py2.py3-none-any.whl", hash = "sha256:597bfef186b6f60181535a29fbe44865ce137a5079f295b479886c82729d5f3f", size = 11298, upload-time = "2025-10-30T08:19:00.758Z" }, ] +[[package]] +name = "distro" +version = "1.9.0" +source = { registry = "https://pypi.org/simple" } +sdist = { url = "https://files.pythonhosted.org/packages/fc/f8/98eea607f65de6527f8a2e8885fc8015d3e6f5775df186e443e0964a11c3/distro-1.9.0.tar.gz", hash = "sha256:2fa77c6fd8940f116ee1d6b94a2f90b13b5ea8d019b98bc8bafdcabcdd9bdbed", size = 60722, upload-time = "2023-12-24T09:54:32.31Z" } +wheels = [ + { url = "https://files.pythonhosted.org/packages/12/b3/231ffd4ab1fc9d679809f356cebee130ac7daa00d6d6f3206dd4fd137e9e/distro-1.9.0-py3-none-any.whl", hash = "sha256:7bffd925d65168f85027d8da9af6bddab658135b840670a223589bc0c8ef02b2", size = 20277, upload-time = "2023-12-24T09:54:30.421Z" }, +] + [[package]] name = "docutils" version = "0.21.2" @@ -2573,6 +2582,19 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/ed/d2/4a73b18821fd4669762c855fd1f4e80ceb66fb72d71162d14da58444a763/rpds_py-0.28.0-pp311-pypy311_pp73-musllinux_1_2_x86_64.whl", hash = "sha256:5d0145edba8abd3db0ab22b5300c99dc152f5c9021fab861be0f0544dc3cbc5f", size = 552199, upload-time = "2025-10-22T22:24:26.54Z" }, ] +[[package]] +name = "ruyaml" +version = "0.91.0" +source = { registry = "https://pypi.org/simple" } +dependencies = [ + { name = "distro" }, + { name = "setuptools" }, +] +sdist = { url = "https://files.pythonhosted.org/packages/4b/75/abbc7eab08bad7f47887a0555d3ac9e3947f89d2416678c08e025e449fdc/ruyaml-0.91.0.tar.gz", hash = "sha256:6ce9de9f4d082d696d3bde264664d1bcdca8f5a9dff9d1a1f1a127969ab871ab", size = 239075, upload-time = "2021-12-07T16:19:58.427Z" } +wheels = [ + { url = "https://files.pythonhosted.org/packages/1e/9a/16ca152a04b231c179c626de40af1d5d0bc2bc57bc875c397706016ddb2b/ruyaml-0.91.0-py3-none-any.whl", hash = "sha256:50e0ee3389c77ad340e209472e0effd41ae0275246df00cdad0a067532171755", size = 108906, upload-time = "2021-12-07T16:19:56.798Z" }, +] + [[package]] name = "send2trash" version = "1.8.3" @@ -2881,14 +2903,15 @@ wheels = [ [[package]] name = "the-caddie" -version = "0.6.1.dev2" -source = { git = "https://github.com/carrollaboratory/the-caddie#c04ede34b96cf5fe9e64b4a173683f9634f702b1" } +version = "0.6.2.dev1" +source = { git = "https://github.com/carrollaboratory/the-caddie#82fe600dffd73421f72cfd4f6fd0860ea8455f2f" } dependencies = [ { name = "hatchling" }, { name = "httpx" }, { name = "linkml" }, { name = "linkml-runtime" }, { name = "rich" }, + { name = "ruyaml" }, { name = "tomli", marker = "python_full_version < '3.11'" }, ]