Skip to content

concatenating discrete polypeptides to satisfy this sequence field #4

@ghost

Description

The type spec:

typedef structure {
mol_id id;
string sequence;
string md5;
uniref_id uniref_id;
genome_ref genome_ref;
cds_id cds_id;
} ProteinData;

The usage:

for pp in ppb.build_peptides(structure):
pp_no += 1
my_seq= pp.get_sequence()
pp_list += str(my_seq)
seq = ''.join(pp_list)
data = {
'name': os.path.basename(file_path),
'num_chains': chain_no,
'num_residues': res_no,
'num_atoms': atom_no,
'protein': {
'id': os.path.basename(file_path),
'sequence': seq,
'md5': hashlib.md5(seq.encode()).hexdigest()
},
}

Where else can I open an issue for this?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions