Affymetrix

GeneLab bioinformatics processing pipeline for Affymetrix microarray data

The document GL-DPPD-7114.md holds an overview and example commands for how GeneLab processes Affymetrix microarray datasets. See the Repository Links descriptions below for more information. Processed data output files and processing code is provided for each GLDS dataset along with the processed data in the Open Science Data Repository (OSDR).

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Repository Links

• Pipeline_GL-DPPD-7114_Versions

  • Contains the current and previous GeneLab Affymetrix microarray data processing pipeline (NF_MAAffy) versions documentation

• Workflow_Documentation

  • Contains instructions for installing and running the GeneLab NF_MAAffy workflow

    Note: The NF_MAAffy workflow is currently in development and not yet available

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Developed and maintained by:
Jonathan Oribello