environment.yml

name: bigsur
channels:
  - conda-forge
dependencies:
  - _r-mutex=1.0.1=anacondar_1
  - anndata=0.11.4=pyhd8ed1ab_0
  - appnope=0.1.4=pyhd8ed1ab_1
  - arpack=3.9.1=nompi_h1f29f7c_102
  - array-api-compat=1.12.0=pyhe01879c_0
  - asttokens=3.0.0=pyhd8ed1ab_1
  - brotli=1.1.0=h5505292_3
  - brotli-bin=1.1.0=h5505292_3
  - bwidget=1.10.1=hce30654_1
  - bzip2=1.0.8=h99b78c6_7
  - c-ares=1.34.5=h5505292_0
  - ca-certificates=2025.6.15=hbd8a1cb_0
  - cached-property=1.5.2=hd8ed1ab_1
  - cached_property=1.5.2=pyha770c72_1
  - cairo=1.18.4=h6a3b0d2_0
  - cctools_osx-arm64=1010.6=h729f01a_6
  - clang=20.1.7=default_hcdeef69_0
  - clang-20=20.1.7=default_h03658f6_0
  - clang_impl_osx-arm64=20.1.7=h5bfba70_25
  - clang_osx-arm64=20.1.7=h07b0088_25
  - clangxx=20.1.7=default_haca757a_0
  - clangxx_impl_osx-arm64=20.1.7=h12301e7_25
  - clangxx_osx-arm64=20.1.7=h07b0088_25
  - colorama=0.4.6=pyhd8ed1ab_1
  - comm=0.2.2=pyhd8ed1ab_1
  - compiler-rt=20.1.7=hd2aecb6_0
  - compiler-rt_osx-arm64=20.1.7=h7969c41_0
  - contourpy=1.3.2=py312hb23fbb9_0
  - curl=8.14.1=h73640d1_0
  - cycler=0.12.1=pyhd8ed1ab_1
  - debugpy=1.8.14=py312hd8f9ff3_0
  - decorator=5.2.1=pyhd8ed1ab_0
  - exceptiongroup=1.3.0=pyhd8ed1ab_0
  - executing=2.2.0=pyhd8ed1ab_0
  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  - font-ttf-inconsolata=3.000=h77eed37_0
  - font-ttf-source-code-pro=2.038=h77eed37_0
  - font-ttf-ubuntu=0.83=h77eed37_3
  - fontconfig=2.15.0=h1383a14_1
  - fonts-conda-ecosystem=1=0
  - fonts-conda-forge=1=0
  - fonttools=4.58.4=py312h998013c_0
  - freetype=2.13.3=hce30654_1
  - fribidi=1.0.10=h27ca646_0
  - gfortran_impl_osx-arm64=13.3.0=h16b3750_105
  - gfortran_osx-arm64=13.3.0=h3c33bd0_1
  - glpk=5.0=h6d7a090_0
  - gmp=6.3.0=h7bae524_2
  - graphite2=1.3.14=h286801f_0
  - gsl=2.7=h6e638da_0
  - h5py=3.14.0=nompi_py312h35183de_100
  - harfbuzz=11.2.1=hab40de2_0
  - hdf5=1.14.6=nompi_ha698983_101
  - icu=75.1=hfee45f7_0
  - igraph=0.10.16=hb134b8e_0
  - importlib-metadata=8.7.0=pyhe01879c_1
  - ipykernel=6.29.5=pyh57ce528_0
  - ipython=9.3.0=pyhfa0c392_0
  - ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
  - isl=0.26=imath32_h347afa1_101
  - jedi=0.19.2=pyhd8ed1ab_1
  - joblib=1.5.1=pyhd8ed1ab_0
  - jupyter_client=8.6.3=pyhd8ed1ab_1
  - jupyter_core=5.8.1=pyh31011fe_0
  - kiwisolver=1.4.8=py312h2c4a281_0
  - krb5=1.21.3=h237132a_0
  - lcms2=2.17=h7eeda09_0
  - ld64_osx-arm64=951.9=hcfee506_6
  - legacy-api-wrap=1.4.1=pyhd8ed1ab_0
  - leidenalg=0.10.2=py312h20a0b95_0
  - lerc=4.0.0=hd64df32_1
  - libaec=1.1.4=h51d1e36_0
  - libasprintf=0.24.1=h493aca8_0
  - libblas=3.9.0=32_h10e41b3_openblas
  - libbrotlicommon=1.1.0=h5505292_3
  - libbrotlidec=1.1.0=h5505292_3
  - libbrotlienc=1.1.0=h5505292_3
  - libcblas=3.9.0=32_hb3479ef_openblas
  - libclang-cpp20.1=20.1.7=default_h03658f6_0
  - libcurl=8.14.1=h73640d1_0
  - libcxx=20.1.7=ha82da77_0
  - libcxx-devel=20.1.7=h6dc3340_0
  - libdeflate=1.24=h5773f1b_0
  - libedit=3.1.20250104=pl5321hafb1f1b_0
  - libev=4.33=h93a5062_2
  - libexpat=2.7.0=h286801f_0
  - libffi=3.4.6=h1da3d7d_1
  - libfreetype=2.13.3=hce30654_1
  - libfreetype6=2.13.3=h1d14073_1
  - libgettextpo=0.24.1=h493aca8_0
  - libgfortran=5.0.0=14_2_0_h6c33f7e_103
  - libgfortran-devel_osx-arm64=13.3.0=h5020ebb_105
  - libgfortran5=14.2.0=h6c33f7e_103
  - libglib=2.84.2=hbec27ea_0
  - libhwloc=2.11.2=default_hbce5d74_1001
  - libiconv=1.18=hfe07756_1
  - libintl=0.24.1=h493aca8_0
  - libjpeg-turbo=3.1.0=h5505292_0
  - liblapack=3.9.0=32_hc9a63f6_openblas
  - libleidenalg=0.11.1=h1995070_0
  - libllvm20=20.1.7=h598bca7_0
  - liblzma=5.8.1=h39f12f2_2
  - libnghttp2=1.64.0=h6d7220d_0
  - libopenblas=0.3.30=openmp_hf332438_0
  - libpng=1.6.49=h3783ad8_0
  - libsodium=1.0.20=h99b78c6_0
  - libsqlite=3.50.1=h3f77e49_4
  - libssh2=1.11.1=h1590b86_0
  - libtiff=4.7.0=h2f21f7c_5
  - libuv=1.51.0=h5505292_0
  - libwebp-base=1.5.0=h2471fea_0
  - libxcb=1.17.0=hdb1d25a_0
  - libxml2=2.13.8=h52572c6_0
  - libzlib=1.3.1=h8359307_2
  - llvm-openmp=20.1.7=hdb05f8b_0
  - llvm-tools=20.1.7=hd2aecb6_0
  - llvm-tools-20=20.1.7=h87a4c7e_0
  - llvmlite=0.44.0=py312h728bc31_1
  - make=4.4.1=hc9fafa5_2
  - matplotlib-base=3.10.3=py312hdbc7e53_0
  - matplotlib-inline=0.1.7=pyhd8ed1ab_1
  - mpc=1.3.1=h8f1351a_1
  - mpfr=4.2.1=hb693164_3
  - mpmath=1.3.0=pyhd8ed1ab_1
  - munkres=1.1.4=pyhd8ed1ab_1
  - natsort=8.4.0=pyh29332c3_1
  - ncurses=6.5=h5e97a16_3
  - nest-asyncio=1.6.0=pyhd8ed1ab_1
  - networkx=3.5=pyhe01879c_0
  - numba=0.61.2=py312h22bc582_1
  - numexpr=2.10.2=py312hbbbb429_0
  - numpy=2.2.6=py312h7c1f314_0
  - openjpeg=2.5.3=h8a3d83b_0
  - openssl=3.5.0=h81ee809_1
  - packaging=25.0=pyh29332c3_1
  - pandas=2.3.0=py312hcb1e3ce_0
  - pandoc=3.7.0.2=hce30654_0
  - pango=1.56.3=h5fd7515_1
  - parso=0.8.4=pyhd8ed1ab_1
  - patsy=1.0.1=pyhd8ed1ab_1
  - pcre2=10.45=ha881caa_0
  - pexpect=4.9.0=pyhd8ed1ab_1
  - pickleshare=0.7.5=pyhd8ed1ab_1004
  - pillow=11.2.1=py312h50aef2c_0
  - pip=25.1.1=pyh8b19718_0
  - pixman=0.46.2=h2f9eb0b_0
  - platformdirs=4.3.8=pyhe01879c_0
  - prompt-toolkit=3.0.51=pyha770c72_0
  - psutil=7.0.0=py312hea69d52_0
  - pthread-stubs=0.4=hd74edd7_1002
  - ptyprocess=0.7.0=pyhd8ed1ab_1
  - pure_eval=0.2.3=pyhd8ed1ab_1
  - pygments=2.19.1=pyhd8ed1ab_0
  - pynndescent=0.5.13=pyhd8ed1ab_1
  - pyparsing=3.2.3=pyhd8ed1ab_1
  - python=3.12.11=hc22306f_0_cpython
  - python-dateutil=2.9.0.post0=pyhff2d567_1
  - python-igraph=0.11.9=py312h5b0e81b_0
  - python-tzdata=2025.2=pyhd8ed1ab_0
  - python_abi=3.12=7_cp312
  - pytz=2025.2=pyhd8ed1ab_0
  - pyzmq=27.0.0=py312hf4875e0_0
  - qhull=2020.2=h420ef59_5
  - r-abind=1.4_5=r44hc72bb7e_1006
  - r-askpass=1.2.1=r44h0d9a900_0
  - r-base=4.4.3=he27e5f0_2
  - r-base64enc=0.1_3=r44h07cda29_1007
  - r-bh=1.87.0_1=r44hc72bb7e_0
  - r-bitops=1.0_9=r44h0d9a900_0
  - r-bslib=0.9.0=r44hc72bb7e_0
  - r-cachem=1.1.0=r44h07cda29_1
  - r-catools=1.18.3=r44hdd833ad_0
  - r-cli=3.6.5=r44h31118f2_0
  - r-cluster=2.1.8.1=r44he0ea626_0
  - r-codetools=0.2_20=r44hc72bb7e_1
  - r-colorspace=2.1_1=r44h07cda29_0
  - r-commonmark=1.9.5=r44h570997c_0
  - r-cowplot=1.1.3=r44hc72bb7e_1
  - r-cpp11=0.5.2=r44h785f33e_1
  - r-crayon=1.5.3=r44hc72bb7e_1
  - r-crosstalk=1.2.1=r44hc72bb7e_1
  - r-curl=6.2.2=r44h95ef94e_0
  - r-data.table=1.17.6=r44h28c71e1_0
  - r-deldir=2.0_4=r44h7807725_1
  - r-digest=0.6.37=r44hd76f289_0
  - r-dotcall64=1.2=r44hf8db2fc_0
  - r-dplyr=1.1.4=r44hd76f289_1
  - r-dqrng=0.3.2=r44hd76f289_1
  - r-ellipsis=0.3.2=r44h07cda29_3
  - r-evaluate=1.0.4=r44hc72bb7e_0
  - r-fansi=1.0.6=r44h07cda29_1
  - r-farver=2.1.2=r44hd76f289_1
  - r-fastdummies=1.7.5=r44hc72bb7e_0
  - r-fastmap=1.2.0=r44hd76f289_1
  - r-fitdistrplus=1.2_2=r44hc72bb7e_0
  - r-fnn=1.1.4.1=r44hdd833ad_0
  - r-fontawesome=0.5.3=r44hc72bb7e_0
  - r-fs=1.6.6=r44h31118f2_0
  - r-future=1.58.0=r44h785f33e_0
  - r-future.apply=1.20.0=r44hc72bb7e_0
  - r-generics=0.1.4=r44hc72bb7e_0
  - r-ggplot2=3.5.2=r44hc72bb7e_0
  - r-ggrepel=0.9.6=r44hdd833ad_0
  - r-ggridges=0.5.6=r44hc72bb7e_1
  - r-globals=0.18.0=r44hc72bb7e_0
  - r-glue=1.8.0=r44h0d9a900_0
  - r-goftest=1.2_3=r44h07cda29_3
  - r-gplots=3.2.0=r44hc72bb7e_0
  - r-gridextra=2.3=r44hc72bb7e_1006
  - r-gtable=0.3.6=r44hc72bb7e_0
  - r-gtools=3.9.5=r44h07cda29_1
  - r-here=1.0.1=r44hc72bb7e_3
  - r-hexbin=1.28.5=r44he0ea626_0
  - r-highr=0.11=r44hc72bb7e_1
  - r-htmltools=0.5.8.1=r44hd76f289_1
  - r-htmlwidgets=1.6.4=r44h785f33e_3
  - r-httpuv=1.6.15=r44hd76f289_1
  - r-httr=1.4.7=r44hc72bb7e_1
  - r-ica=1.0_3=r44hc72bb7e_3
  - r-igraph=2.0.3=r44h8c4d108_1
  - r-irlba=2.3.5.1=r44hded8dfa_3
  - r-isoband=0.2.7=r44hd76f289_3
  - r-jquerylib=0.1.4=r44hc72bb7e_3
  - r-jsonlite=2.0.0=r44h570997c_0
  - r-kernsmooth=2.23_26=r44h2c658ed_0
  - r-knitr=1.50=r44hc72bb7e_0
  - r-labeling=0.4.3=r44hc72bb7e_1
  - r-later=1.4.2=r44h31118f2_0
  - r-lattice=0.22_7=r44h570997c_0
  - r-lazyeval=0.2.2=r44h07cda29_5
  - r-leidenbase=0.1.32=r44h393f668_0
  - r-lifecycle=1.0.4=r44hc72bb7e_1
  - r-listenv=0.9.1=r44hc72bb7e_1
  - r-lmtest=0.9_40=r44h7807725_3
  - r-magrittr=2.0.3=r44h07cda29_3
  - r-mass=7.3_64=r44h570997c_0
  - r-matrix=1.7_3=r44hf6a007b_0
  - r-matrixstats=1.5.0=r44h570997c_0
  - r-memoise=2.0.1=r44hc72bb7e_3
  - r-mgcv=1.9_3=r44he66de11_0
  - r-mime=0.13=r44h570997c_0
  - r-miniui=0.1.2=r44hc72bb7e_0
  - r-munsell=0.5.1=r44hc72bb7e_1
  - r-nlme=3.1_168=r44he0ea626_0
  - r-openssl=2.3.3=r44h3814a5a_0
  - r-parallelly=1.45.0=r44h570997c_0
  - r-patchwork=1.3.0=r44hc72bb7e_0
  - r-pbapply=1.7_2=r44hc72bb7e_1
  - r-pillar=1.10.2=r44hc72bb7e_0
  - r-pkgconfig=2.0.3=r44hc72bb7e_4
  - r-plotly=4.11.0=r44hc72bb7e_0
  - r-plyr=1.8.9=r44hd76f289_1
  - r-png=0.1_8=r44h272eed0_2
  - r-polyclip=1.10_7=r44hd76f289_0
  - r-progressr=0.15.1=r44hc72bb7e_0
  - r-promises=1.3.2=r44h31118f2_0
  - r-purrr=1.0.4=r44h570997c_0
  - r-r6=2.6.1=r44hc72bb7e_0
  - r-rann=2.6.2=r44hdd833ad_0
  - r-rappdirs=0.3.3=r44h07cda29_3
  - r-rcolorbrewer=1.1_3=r44h785f33e_3
  - r-rcpp=1.0.14=r44h31118f2_0
  - r-rcppannoy=0.0.22=r44hd76f289_1
  - r-rcpparmadillo=14.4.2_1=r44h9618d43_0
  - r-rcppeigen=0.3.4.0.2=r44h8c6f55f_0
  - r-rcpphnsw=0.6.0=r44hd76f289_1
  - r-rcppprogress=0.4.2=r44hc72bb7e_4
  - r-rcpptoml=0.2.3=r44h31118f2_0
  - r-reshape2=1.4.4=r44hd76f289_4
  - r-reticulate=1.42.0=r44h31118f2_0
  - r-rlang=1.1.6=r44h31118f2_0
  - r-rmarkdown=2.29=r44hc72bb7e_0
  - r-rocr=1.0_11=r44h011812f_4
  - r-rprojroot=2.0.4=r44hc72bb7e_1
  - r-rspectra=0.16_2=r44ha5f4c64_0
  - r-rtsne=0.17=r44h4c80817_1
  - r-sass=0.4.10=r44h31118f2_0
  - r-scales=1.4.0=r44hc72bb7e_0
  - r-scattermore=1.2=r44hd76f289_3
  - r-sctransform=0.4.2=r44hb5716f2_0
  - r-seurat=5.3.0=r44h31118f2_0
  - r-seuratobject=5.1.0=r44h31118f2_0
  - r-shiny=1.10.0=r44h785f33e_0
  - r-sitmo=2.0.2=r44h173a3d2_3
  - r-sourcetools=0.1.7_1=r44hd76f289_2
  - r-sp=2.2_0=r44h570997c_0
  - r-spam=2.11_1=r44h15958ca_0
  - r-spatstat.data=3.1_6=r44hc72bb7e_0
  - r-spatstat.explore=3.4_3=r44h570997c_0
  - r-spatstat.geom=3.4_1=r44h570997c_0
  - r-spatstat.random=3.4_1=r44h31118f2_0
  - r-spatstat.sparse=3.1_0=r44h07cda29_1
  - r-spatstat.univar=3.1_3=r44h570997c_0
  - r-spatstat.utils=3.1_4=r44h570997c_0
  - r-stringi=1.8.7=r44h4f22b37_0
  - r-stringr=1.5.1=r44h785f33e_1
  - r-survival=3.8_3=r44h570997c_0
  - r-sys=3.4.3=r44h0d9a900_0
  - r-tensor=1.5.1=r44hc72bb7e_0
  - r-tibble=3.3.0=r44h570997c_0
  - r-tidyr=1.3.1=r44hd76f289_1
  - r-tidyselect=1.2.1=r44hc72bb7e_1
  - r-tinytex=0.57=r44hc72bb7e_0
  - r-utf8=1.2.6=r44h570997c_0
  - r-uwot=0.2.3=r44h31118f2_0
  - r-vctrs=0.6.5=r44hd76f289_1
  - r-viridislite=0.4.2=r44hc72bb7e_2
  - r-withr=3.0.2=r44hc72bb7e_0
  - r-xfun=0.52=r44h31118f2_0
  - r-xtable=1.8_4=r44hc72bb7e_6
  - r-yaml=2.3.10=r44h07cda29_0
  - r-zoo=1.8_14=r44h570997c_0
  - readline=8.2=h1d1bf99_2
  - scanpy=1.11.2=pyhd8ed1ab_0
  - scikit-learn=1.7.0=py312h39203ce_1
  - scipy=1.15.2=py312h99a188d_0
  - seaborn=0.13.2=hd8ed1ab_3
  - seaborn-base=0.13.2=pyhd8ed1ab_3
  - session-info2=0.1.2=pyhd8ed1ab_0
  - setuptools=80.9.0=pyhff2d567_0
  - sigtool=0.1.3=h44b9a77_0
  - six=1.17.0=pyhd8ed1ab_0
  - stack_data=0.6.3=pyhd8ed1ab_1
  - statsmodels=0.14.4=py312h755e627_0
  - tapi=1300.6.5=h03f4b80_0
  - tbb=2022.1.0=h9541205_0
  - texttable=1.7.0=pyhd8ed1ab_1
  - threadpoolctl=3.6.0=pyhecae5ae_0
  - tk=8.6.13=h892fb3f_2
  - tktable=2.10=h3c7de25_7
  - tornado=6.5.1=py312hea69d52_0
  - tqdm=4.67.1=pyhd8ed1ab_1
  - traitlets=5.14.3=pyhd8ed1ab_1
  - typing-extensions=4.14.0=h32cad80_0
  - typing_extensions=4.14.0=pyhe01879c_0
  - tzdata=2025b=h78e105d_0
  - umap-learn=0.5.7=py312h81bd7bf_1
  - unicodedata2=16.0.0=py312hea69d52_0
  - wcwidth=0.2.13=pyhd8ed1ab_1
  - wheel=0.45.1=pyhd8ed1ab_1
  - xorg-libxau=1.0.12=h5505292_0
  - xorg-libxdmcp=1.1.5=hd74edd7_0
  - zeromq=4.3.5=hc1bb282_7
  - zipp=3.23.0=pyhd8ed1ab_0
  - zlib=1.3.1=h8359307_2
  - zstd=1.5.7=h6491c7d_2

prefix: "/Users/emmanueldollinger/.local/share/mamba/envs/bigsur"