Issues

• (possibly redundant), remind user when db size >= pixels

  mscook/SeqFindR#53 · Filter by author mscook opened on Mar 11, 2015

• Split out list of categories colors

  mscook/SeqFindR#52 · Filter by author mscook opened on Mar 11, 2015

• Local packages not always installed in ~/.local/

  mscook/SeqFindR#51 · Filter by author BioMinnie opened on Feb 16, 2015

• Clustering by column should work when providing an index.

  mscook/SeqFindR#48 · Filter by author mscook opened on Nov 20, 2014

• Give the user options to set the the clustering algorithm

  mscook/SeqFindR#47 · Filter by author mscook opened on Nov 20, 2014

• Write out matrix with labels

  mscook/SeqFindR#46 · Filter by author mscook opened on Nov 19, 2014

• Read in results/matrix without needing to re-run!

  mscook/SeqFindR#45 · Filter by author mscook opened on Nov 19, 2014
  1

• Add uniqueness to all output (nice names) so don't get overwritten!

  mscook/SeqFindR#44 · Filter by author mscook opened on Nov 19, 2014

• Handle cases where matrix is very simple (& cannot be clustered)

  mscook/SeqFindR#43 · Filter by author mscook opened on Nov 19, 2014
  1

• underscores in input filesnames/directories

  mscook/SeqFindR#40 · Filter by author mscook opened on Nov 18, 2014

• Combine HSP to make pseudo-hit

  mscook/SeqFindR#39 · Filter by author mscook opened on Nov 18, 2014

• Hit shading by identity/score

  mscook/SeqFindR#38 · Filter by author mscook opened on Nov 18, 2014

• Get Jun's "simple database header" code into master

  mscook/SeqFindR#37 · Filter by author mscook opened on Nov 18, 2014

• Option to translate & cdhit for "closely related" genes

  mscook/SeqFindR#36 · Filter by author mscook opened on Nov 18, 2014

• Provide a single executable (pyinstaller)

  mscook/SeqFindR#34 · Filter by author mscook opened on Jul 28, 2014

• Stashed some changes - not sure why...

  mscook/SeqFindR#29 · Filter by author mscook opened on Jul 14, 2014

• database validator

  enhancement
  mscook/SeqFindR#28 · Filter by author mscook opened on Apr 4, 2014
  1

• Scott may prefer task options with blastn

  question
  mscook/SeqFindR#9 · Filter by author happykhan opened on Jul 16, 2013

• Better exception handling if query directory is empty or do_run fails

  enhancement
  mscook/SeqFindR#6 · Filter by author happykhan opened on Jul 16, 2013
  1

• Investigate the effects of using hsp.identities/float(record.query_length) >= tol vs max_identity >= tol

  question
  mscook/SeqFindR#2 · Filter by author mscook opened on Jun 11, 2013
  2