PhyloMatic emits NeXML that includes otu elements that are internal nodes. This confuses the Mesquite parser. The way to fix this is probably by only setting the references between nodes and taxa for those nodes that turn out to be tips (which we know after the tree has been read).
PhyloMatic emits NeXML that includes
otuelements that are internal nodes. This confuses the Mesquite parser. The way to fix this is probably by only setting the references between nodes and taxa for those nodes that turn out to be tips (which we know after the tree has been read).