Dear Dr, I encountered an error. When running the example codes following documents of CBNplot3.4, some code cannot running successfully in Linux. Please help me.
dep = depmap::depmap_crispr()
bngeneplot(results = pway,
exp = vsted,
expSample = incSample,
pathNum = 15, R = 10, compareRef = T,
convertSymbol = T, pathDb = "reactome", compareRefType = "intersection",
expRow = "ENSEMBL", sizeDep = T, dep = dep, strengthPlot = T, nStrength = 10)
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
Error in checkHT(n, dx <- dim(x)) :
invalid 'n' - must contain at least one non-missing element, got none.
此外: Warning messages:
1: In averaged.network.backend(strength = strength, threshold = threshold) :
arc BRIP1 -> CHEK1 would introduce cycles in the graph, ignoring.
2: In averaged.network.backend(strength = strength, threshold = threshold) :
arc MRE11 -> BRIP1 would introduce cycles in the graph, ignoring.
3: In cextend(av, strict = FALSE) :
no consistent extension of av is possible.
Dear Dr, I encountered an error. When running the example codes following documents of CBNplot3.4, some code cannot running successfully in Linux. Please help me.
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
Error in checkHT(n, dx <- dim(x)) :
invalid 'n' - must contain at least one non-missing element, got none.
此外: Warning messages:
1: In averaged.network.backend(strength = strength, threshold = threshold) :
arc BRIP1 -> CHEK1 would introduce cycles in the graph, ignoring.
2: In averaged.network.backend(strength = strength, threshold = threshold) :
arc MRE11 -> BRIP1 would introduce cycles in the graph, ignoring.
3: In cextend(av, strict = FALSE) :
no consistent extension of av is possible.