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Discover performance bottlenecks and fixes #4

Description

@pstelzig

Goal: Speedup

In the current implementation as of v0.1.0, the implementation was aimed for clarity and did not prioritize execution speed during simulation or measure impact on simulation times.

Improve speed without loss of clarity

We want to identify major performance bottlenecks, rank by impact on simulation performance, and then implement such improvements that do not detract significantly from the clarity of implementation.

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