From 9b392bb3e680c6b9d95b6b566bc854a49fdc34a9 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 24 Aug 2026 20:26:29 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
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Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/biomejs/pre-commit: v2.5.2 → v2.5.10](https://github.com/biomejs/pre-commit/compare/v2.5.2...v2.5.10)
- [github.com/tox-dev/pyproject-fmt: v2.25.1 → v2.28.1](https://github.com/tox-dev/pyproject-fmt/compare/v2.25.1...v2.28.1)
- [github.com/astral-sh/ruff-pre-commit: v0.15.20 → v0.16.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.20...v0.16.4)
---
 .pre-commit-config.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index c7982e6..730f2cf 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -7,16 +7,16 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
   - repo: https://github.com/biomejs/pre-commit
-    rev: v2.5.2
+    rev: v2.5.10
     hooks:
       - id: biome-format
         exclude: ^\.cruft\.json$ # inconsistent indentation with cruft - file never to be modified manually.
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.25.1
+    rev: v2.28.1
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.20
+    rev: v0.16.4
     hooks:
       - id: ruff-check
         types_or: [python, pyi, jupyter]

From c15c6d42d27879510e82218fdca15e3611d97314 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 24 Aug 2026 20:26:58 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 3fefbfe..5547341 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -174,11 +174,11 @@ ini_options.markers = [
 ini_options.xfail_strict = true
 
 [tool.coverage]
+run.source = [ "cell_annotator" ]
 run.omit = [
   "**/test_*.py",
 ]
 run.patch = [ "subprocess" ]
-run.source = [ "cell_annotator" ]
 
 [tool.cruft]
 skip = [