Issues

• [Enhancement] Add bulk ATAC-seq AnnData ingestion path to the atac module

  scverse/muon#195 · Filter by author BDBGenomics opened on May 22, 2026
  1

• Add single cell HiC datasets into Muon container

  scverse/muon#159 · Filter by author Xuyuch opened on Mar 12, 2025

• "OptionError: 'Pattern matched multiple keys'" traceback in tutorial

  bug
  scverse/muon#119 · Filter by author chris-rands opened on Aug 4, 2023

• Make code that retrieves values from obs/X/layer/raw of the different modalities a public function

  enhancement
  scverse/muon#98 · Filter by author grst opened on Mar 29, 2023

• Broken link: tutorial for cell type annotation

  bug
  scverse/muon#97 · Filter by author yangjun9095 opened on Mar 15, 2023

• Any plan to add footprints module for ATAC-seq?

  enhancement
  scverse/muon#90 · Filter by author lzj1769 opened on Jan 28, 2023
  1

• Peak GC content quantification in ATAC module

  atacenhancement
  scverse/muon#54 · Filter by author emdann opened on Apr 8, 2022
  1

• Datasets module

  enhancement
  scverse/muon#45 · Filter by author ivirshup opened on Dec 6, 2021
  3

• unify logging

  scverse/muon#31 · Filter by author ilia-kats opened on Jun 21, 2021
  1