Preview for PR #5 4c93688

Author: timtreis

pr-5/_sources/notebooks/examples/interactive_annotate.ipynb

@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '0.1.dev1+g831d2062c.d20260527',
+    VERSION: '0.1.dev1+g55eab64cc.d20260527',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

pr-5/_static/documentation_options.js

@@ -56,7 +56,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=717e0d6d"></script>
+    <script src="_static/documentation_options.js?v=68538eb9"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
     <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="_static/clipboard.min.js?v=a7894cd8"></script>
@@ -70,7 +70,7 @@
     <link rel="prev" title="Interactive region annotation" href="notebooks/examples/interactive_annotate.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-  <meta name="docsearch:version" content="0.1.dev1+g831d2062c.d20260527" />
+  <meta name="docsearch:version" content="0.1.dev1+g55eab64cc.d20260527" />
   </head>
 
 

pr-5/api.html

@@ -56,7 +56,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=717e0d6d"></script>
+    <script src="_static/documentation_options.js?v=68538eb9"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
     <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="_static/clipboard.min.js?v=a7894cd8"></script>
@@ -70,7 +70,7 @@
     <link rel="prev" title="Plotting (.pl)" href="plotting.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-  <meta name="docsearch:version" content="0.1.dev1+g831d2062c.d20260527" />
+  <meta name="docsearch:version" content="0.1.dev1+g55eab64cc.d20260527" />
   </head>
 
 

pr-5/changelog.html

@@ -57,7 +57,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=717e0d6d"></script>
+    <script src="_static/documentation_options.js?v=68538eb9"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
     <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="_static/clipboard.min.js?v=a7894cd8"></script>
@@ -72,7 +72,7 @@
     <link rel="prev" title="Changelog" href="changelog.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-  <meta name="docsearch:version" content="0.1.dev1+g831d2062c.d20260527" />
+  <meta name="docsearch:version" content="0.1.dev1+g55eab64cc.d20260527" />
   </head>
 
 

pr-5/contributing.html

@@ -56,7 +56,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=717e0d6d"></script>
+    <script src="_static/documentation_options.js?v=68538eb9"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
     <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="_static/clipboard.min.js?v=a7894cd8"></script>
@@ -70,7 +70,7 @@
     <link rel="prev" title="spatialdata-plot: rich static plotting from SpatialData objects" href="index.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-  <meta name="docsearch:version" content="0.1.dev1+g831d2062c.d20260527" />
+  <meta name="docsearch:version" content="0.1.dev1+g55eab64cc.d20260527" />
   </head>
 
 

pr-5/gallery.html

@@ -44,7 +44,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=717e0d6d"></script>
+    <script src="_static/documentation_options.js?v=68538eb9"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
     <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="_static/clipboard.min.js?v=a7894cd8"></script>
@@ -56,7 +56,7 @@
     <link rel="search" title="Search" href="search.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-  <meta name="docsearch:version" content="0.1.dev1+g831d2062c.d20260527" />
+  <meta name="docsearch:version" content="0.1.dev1+g55eab64cc.d20260527" />
   </head>
 
 
@@ -290,12 +290,21 @@ <h1></h1>
 <h1 id="index">Index</h1>
 
 <div class="genindex-jumpbox">
- <a href="#M"><strong>M</strong></a>
+ <a href="#A"><strong>A</strong></a>
+ | <a href="#M"><strong>M</strong></a>
  | <a href="#P"><strong>P</strong></a>
  | <a href="#R"><strong>R</strong></a>
  | <a href="#S"><strong>S</strong></a>
 
 </div>
+<h2 id="A">A</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="plotting.html#spatialdata_plot.pl.basic.PlotAccessor.annotate">annotate() (spatialdata_plot.pl.basic.PlotAccessor method)</a>
+</li>
+  </ul></td>
+</tr></table>
+
 <h2 id="M">M</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>

pr-5/genindex.html

@@ -56,7 +56,7 @@
   <link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="_static/documentation_options.js?v=717e0d6d"></script>
+    <script src="_static/documentation_options.js?v=68538eb9"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
     <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="_static/clipboard.min.js?v=a7894cd8"></script>
@@ -69,7 +69,7 @@
     <link rel="next" title="Gallery" href="gallery.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-  <meta name="docsearch:version" content="0.1.dev1+g831d2062c.d20260527" />
+  <meta name="docsearch:version" content="0.1.dev1+g55eab64cc.d20260527" />
   </head>
 
 

pr-5/index.html

@@ -56,7 +56,7 @@
   <link rel="preload" as="script" href="../../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="../../_static/documentation_options.js?v=717e0d6d"></script>
+    <script src="../../_static/documentation_options.js?v=68538eb9"></script>
     <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
     <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
@@ -70,7 +70,7 @@
     <link rel="prev" title="Colour and palettes in spatialdata-plot" href="../tutorials/color_and_palette.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-  <meta name="docsearch:version" content="0.1.dev1+g831d2062c.d20260527" />
+  <meta name="docsearch:version" content="0.1.dev1+g55eab64cc.d20260527" />
   </head>
 
 

pr-5/notebooks/examples/index.html

@@ -56,7 +56,7 @@
   <link rel="preload" as="script" href="../../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
 <link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
 
-    <script src="../../_static/documentation_options.js?v=717e0d6d"></script>
+    <script src="../../_static/documentation_options.js?v=68538eb9"></script>
     <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
     <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
@@ -70,7 +70,7 @@
     <link rel="prev" title="Plotting a Visium dataset" href="visium_mouse_brain.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
-  <meta name="docsearch:version" content="0.1.dev1+g831d2062c.d20260527" />
+  <meta name="docsearch:version" content="0.1.dev1+g55eab64cc.d20260527" />
   </head>
 
 
@@ -530,7 +530,7 @@ <h2>Working with the saved region<a class="headerlink" href="#working-with-the-s
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../../_images/bb661f896d13cf71a717edb36f0791a757fe7dbde51edf2a5675710a3a02fa7f.png" src="../../_images/bb661f896d13cf71a717edb36f0791a757fe7dbde51edf2a5675710a3a02fa7f.png" />
+<img alt="../../_images/a63c16dec8933d4e969ad920dc6d6f2dcbe29476f2e11a7ec646e0829e84726c.png" src="../../_images/a63c16dec8933d4e969ad920dc6d6f2dcbe29476f2e11a7ec646e0829e84726c.png" />
 </div>
 </div>
 </section>
@@ -551,12 +551,12 @@ <h2>Cropping the dataset to the region<a class="headerlink" href="#cropping-the-
 <div class="cell_output docutils container">
 <div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>SpatialData object
 ├── Images
-│     └── &#39;hne&#39;: DataTree[cyx] (3, 2394, 4035), (3, 1196, 2017), (3, 599, 1008), (3, 299, 504)
+│     └── &#39;hne&#39;: DataTree[cyx] (3, 2407, 3858), (3, 1204, 1929), (3, 601, 964), (3, 301, 483)
 ├── Shapes
 │     ├── &#39;poly&#39;: GeoDataFrame shape: (1, 1) (2D shapes)
-│     └── &#39;spots&#39;: GeoDataFrame shape: (362, 2) (2D shapes)
+│     └── &#39;spots&#39;: GeoDataFrame shape: (351, 2) (2D shapes)
 └── Tables
-      └── &#39;adata&#39;: AnnData (362, 18078)
+      └── &#39;adata&#39;: AnnData (351, 18078)
 with coordinate systems:
     ▸ &#39;global&#39;, with elements:
         hne (Images), poly (Shapes), spots (Shapes)
@@ -576,7 +576,7 @@ <h2>Cropping the dataset to the region<a class="headerlink" href="#cropping-the-
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../../_images/b507c130412db2aff207952b8938ba235d7edaab416cbb158b26ac36dc14bb30.png" src="../../_images/b507c130412db2aff207952b8938ba235d7edaab416cbb158b26ac36dc14bb30.png" />
+<img alt="../../_images/48c1e943f14828f26a2bb1c004b15e17cc68134706fb33d55aea03ee365e6f82.png" src="../../_images/48c1e943f14828f26a2bb1c004b15e17cc68134706fb33d55aea03ee365e6f82.png" />
 </div>
 </div>
 </section>
@@ -596,14 +596,12 @@ <h2>For reproducibility<a class="headerlink" href="#for-reproducibility" title="
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>The watermark extension is already loaded. To reload it, use:
-  %reload_ext watermark
-Python implementation: CPython
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Python implementation: CPython
 Python version       : 3.14.4
 IPython version      : 9.13.0
 
 spatialdata     : 0.7.3
-spatialdata_plot: 0.3.5.dev26+g694ed9238
+spatialdata_plot: 0.4.0
 anywidget       : 0.11.0
 squidpy         : 1.8.1
 matplotlib      : 3.10.9