updating rylen's branch#6
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…e as being all lower case to fix bugs
V4_anna changes into main (v4). Cheung analysis code is revised. Annotator processing revised to avoid errors in retrieving entities from the graph object by naming them all in lowercase.
Rylen V4 to main
V4 nie analysis
Annotator changes and cheung variants analyses
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merging main branch changes into rylen branch to proceed with nie et al analyses