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@AnacletoLAB

AnacletoLab

Computational Biology and Bioinformatics Lab - Dept. of Computer Science - UNIMI

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  1. grape grape Public

    🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations

    Jupyter Notebook 641 39

  2. ensmallen ensmallen Public

    🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.

    Python 41 14

  3. sHAM sHAM Public

    Compact representations of convolutional neural networks via weight pruning and quantization

    Python 10 3

  4. parSMURF parSMURF Public

    High Performance Computing imbalance-aware machine learning tool for the genome-wide detection of pathogenic variants

    Python 7 2

  5. epigenomic_dataset epigenomic_dataset Public

    Python package wrapping ENCODE epigenomic data for a number of reference cell lines.

    Jupyter Notebook 6 1

  6. ncRNA-CUPID ncRNA-CUPID Public

    ncRNA-CUPID, Computational Understanding of Pairwise Interactions in ncRNA Data (matchmaking for ncRNAs)

    Jupyter Notebook 4

Repositories

Showing 10 of 31 repositories
  • RNAInterSeq Public

    Preprocessing toolkit for sequence-centric modeling of RNA–RNA interactions using RNAInter.

    AnacletoLAB/RNAInterSeq's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 18, 2026
  • mosclust Public

    Stability based methods for model order selection in clustering problems.

    AnacletoLAB/mosclust's past year of commit activity
    R 0 0 0 0 Updated Sep 10, 2026
  • clusterv Public

    The clusterv R package implements a set of functions to assess the reliability of clusters discovered by clustering algorithms.

    AnacletoLAB/clusterv's past year of commit activity
    R 0 0 0 0 Updated Sep 9, 2026
  • GRIP-Transformer Public

    Generative Non-coding RNA Interaction Predictor (GRIP). Seq2seq transformer model with encoder, decoder modules for generative RNA-RNA interaction modelling

    AnacletoLAB/GRIP-Transformer's past year of commit activity
    Python 0 0 0 0 Updated Sep 5, 2026
  • rnacentral-etl Public

    Lightweight parser for RNAcentral releases that extracts URS identifiers, metadata, and sequences. Supports downstream integration with and annotation datasets.

    AnacletoLAB/rnacentral-etl's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 6, 2026
  • tide-var Public

    Ensemble of deep neural networks for the prediction of pathogenic variants in Mendelian diseases

    AnacletoLAB/tide-var's past year of commit activity
    Python 0 1 0 0 Updated Jan 21, 2026
  • ncRNA-CUPID Public

    ncRNA-CUPID, Computational Understanding of Pairwise Interactions in ncRNA Data (matchmaking for ncRNAs)

    AnacletoLAB/ncRNA-CUPID's past year of commit activity
    Jupyter Notebook 4 Apache-2.0 0 0 0 Updated Jan 7, 2026
  • Bioinformatics_practice Public

    Project assignment for the Bioinformatics Master Course

    AnacletoLAB/Bioinformatics_practice's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 13, 2025
  • miRInter-Trans Public

    A transformer-based model to predict micro RNA interactions

    AnacletoLAB/miRInter-Trans's past year of commit activity
    Jupyter Notebook 1 Apache-2.0 0 0 0 Updated Nov 4, 2025
  • ensmallen Public

    🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.

    AnacletoLAB/ensmallen's past year of commit activity
    Python 41 MIT 14 11 1 Updated Sep 29, 2025
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