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Bump the dev-dependencies group with 3 updates - #967

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Bump the dev-dependencies group with 3 updates#967
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Bumps the dev-dependencies group with 3 updates: jupytext, pytest and sphinxcontrib-mermaid.

Updates jupytext from 1.19.3 to 1.19.5

Release notes

Sourced from jupytext's releases.

Version 1.19.5

Changed

  • Harden the github action (#1569). Thanks to Peyton Murray for this PR
  • The JupyterLab extension is now built with jupyter-builder - Thanks to Mahendra Paipuri for this PR (#1590)
  • zizmor and pre-commit are now required to pass before any other CI job runs, and the extension lint is now part of pre-commit (#1594)
  • Enabled TypeScript strict null checks in the JupyterLab extension - Thanks to Michał Krassowski for this PR (#1586)

Fixed

  • Detecting IPython help/shell commands no longer takes quadratic time on lines made of whitespace - Thanks to Naveed for this PR (#1582)
  • Fixed unguarded access to the languageInfo.extensions array, which could still make Jupytext show notebook icons for Python files when the kernel metadata was incomplete - Thanks to Michał Krassowski for this PR (#1584)

Security

  • marimo_py_to_notebook now reuses its secure (0600, mkstemp-backed) temporary files instead of closing and reopening them by name, which removed the safe permissions and left a window for a symlink attack on shared machines (#1568). Thanks to Naveed for reporting and fixing this!

Version 1.19.4

Changed

  • Jupytext's documentation is now at https://jupytext.org! (#1538)
  • We have moved Jupytext to its own Jupytext organization (#1546)
  • Updated the JupyterLab extension production dependencies (12 patch updates) (#1541)
  • We require pandoc<3.10 on the CI as pandoc converts the "3.10" string to a float, which then causes issues in Jupytext (#1545)
  • Fixed the CI so that tests also run on scheduled runs, and so that jupyterfs tests are skipped when their initialization fails (#1539)
  • In the CI, the extension is build using a dedicated build pixi environment.

Fixed

  • We now support unicode characters while dumping YAML (#1542)

Added

  • A new custom_language_magics option is available (#1491). Thanks to steovd for making the PR!

Security

  • Fixed GHSA-m22c-4q2m-m5wr: the update-playwright-snapshots workflow was triggerable by any user via an issue_comment event. It now checks that the comment author is an OWNER, MEMBER, or COLLABORATOR before running (#1535)
  • Set persist-credentials: false on all workflow checkout steps as defense-in-depth, preventing a live GITHUB_TOKEN from being left in .git/config where attacker-controlled build hooks could read it. This is strictly required only for update-playwright-snapshots (fixed above), but applies to all workflows so they remain safe if their scope is later extended.
Changelog

Sourced from jupytext's changelog.

1.19.5 (2026-07-21)

Changed

  • Harden the github action (#1569). Thanks to Peyton Murray for this PR
  • The JupyterLab extension is now built with jupyter-builder - Thanks to Mahendra Paipuri for this PR (#1590)
  • zizmor and pre-commit are now required to pass before any other CI job runs, and the extension lint is now part of pre-commit (#1594)
  • Enabled TypeScript strict null checks in the JupyterLab extension - Thanks to Michał Krassowski for this PR (#1586)

Fixed

  • Detecting IPython help/shell commands no longer takes quadratic time on lines made of whitespace - Thanks to Naveed for this PR (#1582)
  • Fixed unguarded access to the languageInfo.extensions array, which could still make Jupytext show notebook icons for Python files when the kernel metadata was incomplete - Thanks to Michał Krassowski for this PR (#1584)

Security

  • marimo_py_to_notebook now reuses its secure (0600, mkstemp-backed) temporary files instead of closing and reopening them by name, which removed the safe permissions and left a window for a symlink attack on shared machines (#1568). Thanks to Naveed for reporting and fixing this!

1.19.4 (2026-06-21)

Changed

  • Jupytext's documentation is now at https://jupytext.org! (#1538)
  • We have moved Jupytext to its own Jupytext organization (#1546)
  • Updated the JupyterLab extension production dependencies (12 patch updates) (#1541)
  • We require pandoc<3.10 on the CI as pandoc converts the "3.10" string to a float, which then causes issues in Jupytext (#1545)
  • Fixed the CI so that tests also run on scheduled runs, and so that jupyterfs tests are skipped when their initialization fails (#1539)
  • In the CI, the extension is build using a dedicated build pixi environment.

Fixed

  • We now support unicode characters while dumping YAML (#1542)

Added

  • A new custom_language_magics option is available (#1491). Thanks to steovd for making the PR!

Security

  • Fixed GHSA-m22c-4q2m-m5wr: the update-playwright-snapshots workflow was triggerable by any user via an issue_comment event. It now checks that the comment author is an OWNER, MEMBER, or COLLABORATOR before running (#1535)
  • Set persist-credentials: false on all workflow checkout steps as defense-in-depth, preventing a live GITHUB_TOKEN from being left in .git/config where attacker-controlled build hooks could read it. This is strictly required only for update-playwright-snapshots (fixed above), but applies to all workflows so they remain safe if their scope is later extended.
Commits
  • 3132c6c Version 1.19.5
  • d8d4d14 build(deps): bump axios from 1.16.0 to 1.18.1 in /jupyterlab in the jupytext-...
  • 1a6fde9 build(deps): bump the actions-dependencies group with 3 updates
  • 0068463 build(deps): bump astro
  • 58c1eb9 build(deps): bump the jupytext-extension-dependencies group across 2 director...
  • af6134e Migrate to jupyter-builder for building frontend extension (#1590)
  • bb0de16 build(deps): bump the actions-dependencies group across 1 directory with 8 up...
  • 555b4c2 avoid quadratic backtracking in help/bash magic regex
  • f24a3b7 reuse secure temp files in marimo_py_to_notebook
  • d53e2f1 Require zizmor and precommit on ci (#1594)
  • Additional commits viewable in compare view

Updates pytest from 9.0.3 to 9.1.1

Release notes

Sourced from pytest's releases.

9.1.1

pytest 9.1.1 (2026-06-19)

Bug fixes

  • #14220: Fixed a logic bug in pytest.RaisesGroup which would might cause it to display incorrect "It matches FooError() which was paired with BarError" messages.
  • #14591: Fixed a regression in pytest 9.1.0 which caused overriding a parametrized fixture with an indirect @​pytest.mark.parametrize to fail with "duplicate parametrization of '<fixture name>'".
  • #14606: Fixed list-item typing errors from mypy in @pytest.mark.parametrize <pytest.mark.parametrize ref> argvalues parameter.
  • #14608: Fixed a regression in pytest 9.1.0 where conftest.py files located in <invocation dir>/test* were no longer loaded as initial conftests when invoked without arguments. This could cause certain hooks (like pytest_addoption) in these files to not fire.

9.1.0

pytest 9.1.0 (2026-06-13)

Removals and backward incompatible breaking changes

  • #14533: When using --doctest-modules, autouse fixtures with module, package or session scope that are defined inline in Python test modules (not plugins or conftests) will now possibly execute twice.

    If this is undesirable, move the fixture definition to a conftest.py file if possible.

    Technical explanation for those interested: When using --doctest-modules, pytest possibly collects Python modules twice, once as pytest.Module and once as a DoctestModule (depending on the configuration). Due to improvements in pytest's fixture implementation, if e.g. the DoctestModule collects a fixture, it is now visible to it only, and not to the Module. This means that both need to register the fixtures independently.

Deprecations (removal in next major release)

  • #10819: Added a deprecation warning for class-scoped fixtures defined as instance methods (without @classmethod). Such fixtures set attributes on a different instance than the test methods use, leading to unexpected behavior. Use @classmethod decorator instead -- by yastcher.

    See 10819 and 14011.

  • #12882: Calling request.getfixturevalue() <pytest.FixtureRequest.getfixturevalue> during teardown to request a fixture that was not already requested is now deprecated and will become an error in pytest 10.

    See dynamic-fixture-request-during-teardown for details.

  • #13409: Using non-~collections.abc.Collection iterables (such as generators, iterators, or custom iterable objects) for the argvalues parameter in @pytest.mark.parametrize <pytest.mark.parametrize ref> and metafunc.parametrize <pytest.Metafunc.parametrize> is now deprecated.

    These iterables get exhausted after the first iteration, leading to tests getting unexpectedly skipped in cases such as running pytest.main() multiple times, using class-level parametrize decorators, or collecting tests multiple times.

    See parametrize-iterators for details and suggestions.

  • #13946: The private config.inicfg attribute is now deprecated. Use config.getini() <pytest.Config.getini> to access configuration values instead.

    See config-inicfg for more details.

  • #14004: Passing baseid to ~pytest.FixtureDef or nodeid strings to fixture registration APIs is now deprecated. These are internal pytest APIs that are used by some plugins.

... (truncated)

Commits
  • cf470ec Prepare release version 9.1.1
  • e0c8ce6 Merge pull request #14625 from pytest-dev/patchback/backports/9.1.x/a07c31a97...
  • 1b82d16 Merge pull request #14624 from pytest-dev/patchback/backports/9.1.x/b375b79ec...
  • 501c4bc Merge pull request #14596 from bluetech/doc-classmethod
  • b61f588 Merge pull request #14622 from chrisburr/fix-14608-initial-conftest-test-subdir
  • 9a567e0 [automated] Update plugin list (#14617) (#14618)
  • ef8b299 Merge pull request #14620 from pytest-dev/patchback/backports/9.1.x/680f9f3ed...
  • 66abd07 Merge pull request #14220 from bysiber/fix-stale-iexp-raisesgroup
  • 79fbf93 Merge pull request #14612 from pytest-dev/patchback/backports/9.1.x/974ed48b6...
  • 0d312eb Merge pull request #14611 from bluetech/parametrize-argvalues-typing
  • Additional commits viewable in compare view

Updates sphinxcontrib-mermaid from 2.0.2 to 2.0.3

Changelog

Sourced from sphinxcontrib-mermaid's changelog.

2.0.3 (July 7, 2026)

  • Capture mmdc error message as string for nicer error display
  • Fix local JS module imports on root-level pages by ensuring a valid relative ES module specifier (#246)
  • Defer rendering of Mermaid diagrams hidden by a parent (e.g. Reveal.js slides, unopened tabs) until they become visible, fixing broken SVGs
Commits
  • f992df7 Merge pull request #249 from mgaitan/tkp/203
  • 7ced3de bump to 2.0.3
  • 7346af2 Merge pull request #227 from drillan/fix/lazy-render-hidden-elements
  • b6d1fdc Merge branch 'master' into fix/lazy-render-hidden-elements
  • 425076f Apply zoom to deferred diagrams and fix zoom completion loop
  • 9261af4 Merge pull request #248 from timkpaine/tkp/hf
  • a902799 Fix local JS module imports on root-level pages
  • 881b38a Merge pull request #245 from imphil/string-error-message
  • 4fa3848 fix: Capture mmdc error message as string
  • 1a6cad0 Backfill CHANGELOG for 2.0.2
  • Additional commits viewable in compare view

Most Recent Ignore Conditions Applied to This Pull Request
Dependency Name Ignore Conditions
pytest [>= 8.dev0, < 9]

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@dependabot
Bump the dev-dependencies group with 3 updates
85afeef 
Bumps the dev-dependencies group with 3 updates: [jupytext](https://github.com/jupytext/jupytext), [pytest](https://github.com/pytest-dev/pytest) and [sphinxcontrib-mermaid](https://github.com/mgaitan/sphinxcontrib-mermaid).


Updates `jupytext` from 1.19.3 to 1.19.5
- [Release notes](https://github.com/jupytext/jupytext/releases)
- [Changelog](https://github.com/jupytext/jupytext/blob/main/CHANGELOG.md)
- [Commits](jupytext/jupytext@v1.19.3...v1.19.5)

Updates `pytest` from 9.0.3 to 9.1.1
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@9.0.3...9.1.1)

Updates `sphinxcontrib-mermaid` from 2.0.2 to 2.0.3
- [Changelog](https://github.com/mgaitan/sphinxcontrib-mermaid/blob/master/CHANGELOG.md)
- [Commits](mgaitan/sphinxcontrib-mermaid@2.0.2...2.0.3)

---
updated-dependencies:
- dependency-name: jupytext
  dependency-version: 1.19.5
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: dev-dependencies
- dependency-name: pytest
  dependency-version: 9.1.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: dev-dependencies
- dependency-name: sphinxcontrib-mermaid
  dependency-version: 2.0.3
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: dev-dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added the dependencies Related to or updating any dependencies label Aug 1, 2026
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