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Closes Issue #369: Add date field to package pages #417

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Closes Issue #369: Add date field to package pages #417

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2df3d4c
Refactor top_events to filter upcoming events
Aprameyaraya Aug 31, 2026
261299e
Modify header height and overflow styles
Aprameyaraya Aug 31, 2026
bdebe8f
Update typography.css
Aprameyaraya Aug 31, 2026
6826101
Add hover effect for footer links
Aprameyaraya Aug 31, 2026
77a46d0
Clean up disallow rules in robots.txt
Aprameyaraya Aug 31, 2026
e4dc93b
Update header navigation styles
Aprameyaraya Sep 1, 2026
ec894d1
Change header height from 0 to 2px
Aprameyaraya Sep 1, 2026
ed7cd40
Update typography.css
Aprameyaraya Sep 1, 2026
e0660c5
Update footer.css
Aprameyaraya Sep 1, 2026
6d07294
Update robots.txt to disallow additional packages
Aprameyaraya Sep 1, 2026
d65422a
Refactor top_events method to simplify sorting
Aprameyaraya Sep 2, 2026
caf7c77
Refactor package detail layout to include new fields
Aprameyaraya Sep 2, 2026
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6 changes: 5 additions & 1 deletion assets/style/base/typography.css
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Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,11 @@ h6,
}

a {
color: black;
color: black
}

a:hover {
text-decoration: none;
}

@media (max-device-width: 768px),(width <= 768px){
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4 changes: 4 additions & 0 deletions assets/style/sections/footer.css
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Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,10 @@ footer * {
text-decoration: none;
}

footer a:hover {
text-decoration: none;
}

.footer-container {
max-width: 1400px;
margin: auto;
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106 changes: 43 additions & 63 deletions layouts/_bioc_views_package_detail.html
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Original file line number Diff line number Diff line change
@@ -1,70 +1,50 @@
<h1><%=@package[:Package]%></h1>

<div>
<% if @package.has_key? :PackageStatus and @package[:PackageStatus] == "Deprecated" %>

<p>This package is <b>deprecated</b>. It will probably
be removed from Bioconductor. Please refer to
the <a href="http://contributions.bioconductor.org/package-end-of-life-policy.html">
package end-of-life guidelines</a> for more information.
</p>

<table class="package-details">
<% if @package[:biocViews] %>
<tr>
<th>biocViews</th>
<td><%= @package[:biocViews] %></td>
</tr>
<% end %>

<%= get_fragment(@package, @item, @item_rep) %>

<%# package title - not to be confused with page title %>

<h2><%= @package[:Title]%></h2>

<%= render("/components/packages/badges/", :package => @package) %>
<p><br></p>

<div class="package-info">

<p>
<strong>Bioconductor version:</strong> <%= verbose_bioc_version(@package) %>
</p>
<p>
<%= @package[:Description] %>
</p>
<p>
<strong>Author:</strong> <%= filter_emails(@package[:Author])%>
</p>
<p>
<strong>Maintainer:</strong> <%= filter_emails(@package[:Maintainer])%>
</p>

<!-- Package-specific citation (loaded from citations directory) -->
<% if @package[:Version] %>
<tr>
<th>Version</th>
<td><%= @package[:Version] %></td>
</tr>
<% end %>

<div id="bioc-citation-outer" data-package="<%=@package[:Package]%>">
<strong>Citation (from within R, enter <code>citation("<%=@package[:Package]%>")</code>):</strong>
<div id="bioc-citation" class="bioc-citation"></div>
</div>
<div class="bioc-project-citations">
<strong>Seminal Bioconductor project articles:</strong>
<div class="bioc-citation">
<p><strong>Huber W</strong>, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS,
Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA,
Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P,
Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput
genomic analysis with Bioconductor." <em>Nature Methods</em>, <strong>12</strong>(2),
115–121. doi:<a href="https://doi.org/10.1038/nmeth.3252">10.1038/nmeth.3252</a>.</p>
<p><strong>Gentleman RC</strong>, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S,
Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R,
Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH,
Zhang J (2004). "Bioconductor: open software development for computational biology and
bioinformatics." <em>Genome Biology</em>, <strong>5</strong>(10), R80.
doi:<a href="https://doi.org/10.1186/gb-2004-5-10-r80">10.1186/gb-2004-5-10-r80</a>.</p>
</div>
</div>
</div>
<% if @package[:Date] %>
<tr>
<th>Date</th>
<td><%= @package[:Date] %></td>
</tr>
<% end %>

<% if @package[:"In Bioconductor since"] %>
<tr>
<th>In Bioconductor since</th>
<td><%= @package[:"In Bioconductor since"] %></td>
</tr>
<% end %>

<% if @package[:License] %>
<tr>
<th>License</th>
<td><%= @package[:License] %></td>
</tr>
<% end %>

<%= render("/components/packages/installation/", :package => @package) %>
<%= render("/components/packages/documentation/", :package => @package) %>
<%= render("/components/packages/details/", :package => @package) %>
<%= render("/components/packages/archives/", :package => @package) %>
</div>
<% if @package[:URL] %>
<tr>
<th>URL</th>
<td><%= @package[:URL] %></td>
</tr>
<% end %>

<% if @package[:BugReports] %>
<tr>
<th>BugReports</th>
<td><%= @package[:BugReports] %></td>
</tr>
<% end %>
</table>
2 changes: 1 addition & 1 deletion lib/helpers.rb
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Original file line number Diff line number Diff line change
Expand Up @@ -455,7 +455,7 @@ def top_events(events)
end
toplist = sorted[-5..-1]
toplist.reverse
end
end

def event_date(e)
if (e[:start].month == e[:end].month)
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