Date: 15-17 November 2019
Place: Middle East Technical University, Ankara, Turkey
Organized by: Comparative & Evolutionary Biology @ METU Biology
Price: Free
Application: is no longer possible! For questions write ancientdna.workshop@gmail.com
Instructors
- Dilek Koptekin, Department of Health Informatics, Graduate School of Informatics, METU
- Ekin Sağlıcan, Department of Biological Sciences, METU
- N. Ezgi Altınışık, Department of Anthropology, Hacettepe University
- Kıvılcım Başak Vural, Department of Biological Sciences, METU
- Mehmet Somel, Department of Biological Sciences, METU
The lecture will be based on a large amount of reading material that should be read in advance - you can find them below. The slides used during the lectures will be made available right before the lectures.
- Unix tutorial
- Command-line tutorial
- Learn to keep notes! (use efficient text editor i.e. atom)
- bwa: Page/Manual, Publication(1), Publication(2)
- samtools: Page/Manual, Publication(1), Publication(2)
- pileupCaller: Page/Manual
- plink: Page/Manual, Publication(1)
- vcftools: Page/Manual, Publication(1)
- PMDtools: Page/Manual, Publication(1)
- contaMix: Publication(1)
- schmutzi: Page/Manual, Publication(1)
- ANGSD: Page/Manual, Publication(1)
- EIGENSOFT: Page/Manual, Publication(1), Publication(2)
- Admixtools: Page/Manual, Publication(1)
- ADMIXTURE: Page/Manual, Publication(1)