Workshop in computational analysis of ancient genomes

General info

Date: 7-11 February 2022

Place: Middle East Technical University, Ankara, Turkey

Organized by:

• Comparative & Evolutionary Biology @ METU Biology
• Department of Bioinformatics @ Hacettepe University
• Department of Anthropology @ Hacettepe University

Program

07.02.2022 Monday

09:00-09:50 Prelim. (Kıvılcım)
10:00-10:50 Data processing (Kıvılcım)
11:00-11:50 Data processing (Kıvılcım)

Lunch break

13:00-13:50 Contamination Estimation (Kıvılcım)
14:00-14:50 Genotyping - PileupCaller- angsd (Mustafa)
15:00-15.50 Genotyping - PileupCaller- angsd (Mustafa)

08.02.2022 Tuesday

09:00-09:50 PCA (Yetkin)
10:00-10:50 PCA (Yetkin)
11:00-11:50 f-stat (Yetkin)

Lunch break

13:00-13:50 f-stat (Yetkin)
14:00-14:50 f-stat (Yetkin)
15:00-15.50 Kinship-Read-NsgRelate (Şevval/Arda)

09.02.2022 Wednesday

09:00-09:50 Kinship-Read-NsgRelate (Şevval/Arda)
10:00-10:50 Kinship-Read-NsgRelate (Şevval/Arda)
11:00-11:50 Admixture (Dilek)

Lunch break

13:00-13:50 Admixture (Dilek)
14:00-14:50 Selection (Rabia/Melih)
15:00-15.50 Selection (Rabia/Melih)

10.02.2022 Thursday

09:00-09:50 ROH (Kanat)
10:00-10:50 ROH (Kanat)
11:00-11:50 qpWave / qpAdm (Eren/Ezgi)

Lunch break

13:00-13:50 qpWave / qpAdm (Eren/Ezgi)
14:00-14:50 qpWave / qpAdm (Eren/Ezgi)
15:00-15.50 qpWave / qpAdm (Eren/Ezgi)

11.02.2022 Friday

09:00-09:50 Slim (Gülşah)
10:00-10:50 Slim (Gülşah)
11:00-11:50 Slim (Gülşah)