GeoServer Terraform IaC + OGC API - Features extension

.gcloudignore

@@ -0,0 +1,247 @@
+### JetBrains template
+# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider
+# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
+
+# User-specific stuff
+.idea/**/workspace.xml
+.idea/**/tasks.xml
+.idea/**/usage.statistics.xml
+.idea/**/dictionaries
+.idea/**/shelf
+
+# AWS User-specific
+.idea/**/aws.xml
+
+# Generated files
+.idea/**/contentModel.xml
+
+# Sensitive or high-churn files
+.idea/**/dataSources/
+.idea/**/dataSources.ids
+.idea/**/dataSources.local.xml
+.idea/**/sqlDataSources.xml
+.idea/**/dynamic.xml
+.idea/**/uiDesigner.xml
+.idea/**/dbnavigator.xml
+
+# Gradle
+.idea/**/gradle.xml
+.idea/**/libraries
+
+# Gradle and Maven with auto-import
+# When using Gradle or Maven with auto-import, you should exclude module files,
+# since they will be recreated, and may cause churn.  Uncomment if using
+# auto-import.
+# .idea/artifacts
+# .idea/compiler.xml
+# .idea/jarRepositories.xml
+# .idea/modules.xml
+# .idea/*.iml
+# .idea/modules
+# *.iml
+# *.ipr
+
+# CMake
+cmake-build-*/
+
+# Mongo Explorer plugin
+.idea/**/mongoSettings.xml
+
+# File-based project format
+*.iws
+
+# IntelliJ
+out/
+
+# mpeltonen/sbt-idea plugin
+.idea_modules/
+
+# JIRA plugin
+atlassian-ide-plugin.xml
+
+# Cursive Clojure plugin
+.idea/replstate.xml
+
+# SonarLint plugin
+.idea/sonarlint/
+
+# Crashlytics plugin (for Android Studio and IntelliJ)
+com_crashlytics_export_strings.xml
+crashlytics.properties
+crashlytics-build.properties
+fabric.properties
+
+# Editor-based Rest Client
+.idea/httpRequests
+
+# Android studio 3.1+ serialized cache file
+.idea/caches/build_file_checksums.ser
+
+### PyCharm template
+# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider
+# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
+
+### Python template
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+

.github/dependabot.yml

@@ -0,0 +1,12 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
+
+version: 2
+updates:
+  - package-ecosystem: "uv" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"
+    target-branch: "pre-production"

.github/workflows/format_code.yml

@@ -1,6 +1,8 @@
 name: Code Format
 on:
   push:
+permissions:
+  contents: read
 jobs:
   flake8_py3:
     runs-on: ubuntu-latest
@@ -19,6 +21,9 @@ jobs:
           args: "--exit-zero --select=E"
   format:
     runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      pull-requests: write
     steps:
       - uses: actions/checkout@v4
         with:

.github/workflows/tests.yml

@@ -4,37 +4,42 @@
 name: Tests
 
 on:
-  push:
-  #   branches: [ "main",'pre-production', "dev/jir", "dev/jab"]
   pull_request:
     branches: [ "main",'pre-production']
 
 permissions:
   contents: read
 
-#env:
-#  TEST_DB_USE_CLOUD: "TRUE"
-#  TEST_DB_SERVER_NAME: ${{ secrets.TEST_DB_SERVER_NAME }}
-#  TEST_DB_USER: ${{ secrets.TEST_DB_USER }}
-#  TEST_DB_PASSWORD: ${{ secrets.TEST_DB_PASSWORD }}
-#  TEST_DB_DATABASE: ${{ secrets.TEST_DB_DATABASE }}
-
 jobs:
   build:
     runs-on: ubuntu-latest
+
+    services:
+      postgis_timescaledb:
+        image: ghcr.io/dataintegrationgroup/nmdms:latest
+#        image: postgres
+#        image: postgis/postgis:latest
+#        image: postgis/postgis:17-3.5
+#        image: timescale/timescaledb:2.18.0-pg17
+        env:
+          POSTGRES_PASSWORD: postgres
+        options: >-
+          --health-cmd pg_isready
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+        ports:
+          # Maps tcp port 5432 on service container to the host
+          - 5432:5432
+
     steps:
     - name: Check out source repository
       uses: actions/checkout@v4
 
-    - name: Install dependencies
-      run: |
-          sudo apt-get update
-          sudo apt-get install -y build-essential pkg-config libproj-dev libgeos-dev libsqlite3-dev
-
-    - name: Install SpatiaLite
-      run: |
-          sudo apt-get update
-          sudo apt-get install -y libsqlite3-mod-spatialite libspatialite-dev
+#    - name: Install SpatiaLite
+#      run: |
+#          sudo apt-get update
+#          sudo apt-get install -y libsqlite3-mod-spatialite libspatialite-dev
 
     - name: Install uv
       uses: astral-sh/setup-uv@v5
@@ -51,7 +56,13 @@ jobs:
 
     - name: Run tests
       env:
-        SPATIALITE_LIBRARY_PATH: /usr/lib/x86_64-linux-gnu/mod_spatialite.so
+        MODE: development
+        POSTGRES_HOST: localhost
+        POSTGRES_PORT: 5432
+        POSTGRES_PASSWORD: postgres
+        DB_DRIVER: postgres
+#        SPATIALITE_LIBRARY_PATH: /usr/lib/x86_64-linux-gnu/mod_spatialite.so
+
       run: uv run pytest -vv --durations=20 --junitxml=junit.xml
 
 #    - name: Upload results to Codecov

.gitignore

@@ -18,4 +18,10 @@ wheels/
 # local development files
 development.db
 .env
-reset_db.sh
+reset_db.sh
+tests/uploads
+
+
+# deployment files
+app.yaml
+alembic.ini

ADR1.md

@@ -0,0 +1,16 @@
+## What is the justification for this Project?
+
+The bureau of geology has multiple siloed "data systems" that are not integrated. This leads to inefficiencies in data management, analysis, and sharing. 
+
+Since there is only one data services team, it makes sense to have a single, unified data system that can serve the needs of all the different teams within the bureau. This will allow for better collaboration, data sharing, and overall efficiency in managing geological data.
+
+The goal of this project is to create a unified data system that allows for better data integration, accessibility, and usability across the bureau.
+
+
+
+## Components
+- NMSampleLocations (Storage. Database+API)
+- NMBGMRDataManager (Web-based frontend)
+
+
+