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Helm components and Dockerfile for imod tomo align service - #273

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stephen-riggs merged 4 commits into
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imod-tomo-helm
Jun 23, 2026
Merged

Helm components and Dockerfile for imod tomo align service#273
stephen-riggs merged 4 commits into
mainfrom
imod-tomo-helm

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@stephen-riggs

@stephen-riggs stephen-riggs commented Jun 18, 2026

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Links to #258

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codecov Bot commented Jun 18, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 83.31%. Comparing base (0ba2096) to head (6ef5e88).
⚠️ Report is 5 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #273      +/-   ##
==========================================
+ Coverage   83.11%   83.31%   +0.20%     
==========================================
  Files          70       79       +9     
  Lines        9065    10783    +1718     
  Branches     1245     1541     +296     
==========================================
+ Hits         7534     8984    +1450     
- Misses       1048     1197     +149     
- Partials      483      602     +119     
🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

stephen-riggs added a commit that referenced this pull request Jun 22, 2026
For SXT imod batchruntomo is desired as an alternative to aretomo. This makes a service which can run batchruntomo with a limited subset of options.
In particular, patch or bead and wbp or sirt, with two recipes to support this.

Some of the aretomo parts of this repo are renamed.

Tested through the dev setup and Imod runs successfully, but currently only with version 4.9.2

To do in future PR:

* Upgrade imod version
* Aln file for tilt series alignment image
* xy shift plot
* alignment quality value

Links to DiamondLightSource/python-murfey#830 and #273

@tieneupin tieneupin left a comment

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Looks good to me! Feel free to merge when ready.

@stephen-riggs
stephen-riggs merged commit 15728e0 into main Jun 23, 2026
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@stephen-riggs
stephen-riggs deleted the imod-tomo-helm branch June 23, 2026 10:05
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2 participants