Helm components and Dockerfile for imod tomo align service - #273
Merged
Conversation
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #273 +/- ##
==========================================
+ Coverage 83.11% 83.31% +0.20%
==========================================
Files 70 79 +9
Lines 9065 10783 +1718
Branches 1245 1541 +296
==========================================
+ Hits 7534 8984 +1450
- Misses 1048 1197 +149
- Partials 483 602 +119 🚀 New features to boost your workflow:
|
stephen-riggs
added a commit
that referenced
this pull request
Jun 22, 2026
For SXT imod batchruntomo is desired as an alternative to aretomo. This makes a service which can run batchruntomo with a limited subset of options. In particular, patch or bead and wbp or sirt, with two recipes to support this. Some of the aretomo parts of this repo are renamed. Tested through the dev setup and Imod runs successfully, but currently only with version 4.9.2 To do in future PR: * Upgrade imod version * Aln file for tilt series alignment image * xy shift plot * alignment quality value Links to DiamondLightSource/python-murfey#830 and #273
tieneupin
approved these changes
Jun 23, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Links to #258