Added Dockerfile to build image that will run PySIMRecon

[tieneupin]

Adds a new Dockerfile to build a container that can run PySIMRecon as a cryoem-services service. The container, when run using podman run ..., has been confirmed to work on existing SIM data.

The next PR will involve configuring the PySIMRecon service to run PySIMRecon in a subprocess.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 83.32%. Comparing base (73061a6) to head (8168341).
⚠️ Report is 2 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #293      +/-   ##
==========================================
+ Coverage   83.06%   83.32%   +0.25%     
==========================================
  Files          76       76              
  Lines        9584     9931     +347     
  Branches     1289     1385      +96     
==========================================
+ Hits         7961     8275     +314     
- Misses       1120     1143      +23     
- Partials      503      513      +10     

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[stephen-riggs]

All looks fine. I'm not very familiar with what you're doing with mounting into /mnt but as long as the dockerfile works I'm sure it's fine

[tieneupin]

Thanks for reviewing!

I'm not very familiar with what you're doing with mounting

This is an alternative I've found to using COPY ... when moving setup files from the build directory to the image. You can instead grant the image access to the build directory and mount it to a specific path. This would in practice help with reducing the final image size, since you've removed one layer from the Dockerfile.