Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
Accelerator
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
DiamondLightSource
/
python-murfey
Public
Notifications
You must be signed in to change notification settings
Fork
1
Star
2
Code
Issues
34
Pull requests
4
Actions
Projects
Wiki
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Projects
Wiki
Security and quality
Insights
CLEM Workflow Update
- #669
#669
Merged
tieneupin
merged 12 commits into
main
DiamondLightSource/python-murfey:main
from
clem-workflow-update
DiamondLightSource/python-murfey:clem-workflow-update
Copy head branch name to clipboard
Sep 26, 2025
Conversation
Commits
12
(12)
Checks
Files changed
Merged
CLEM Workflow Update
#669
tieneupin
merged 12 commits into
main
DiamondLightSource/python-murfey:main
from
clem-workflow-update
DiamondLightSource/python-murfey:clem-workflow-update
Copy head branch name to clipboard
Commits
Commits on Sep 22, 2025
Moved 'TiffInfo' Pydantic model to above function where it's called
tieneupin
committed
8effd58
View commit details
Copy full SHA for 8effd58
Browse repository at this point
Removed use of 'quote' around CLEM files, since the file is no longer used in the URL path
tieneupin
committed
6c4e9d2
View commit details
Copy full SHA for 6c4e9d2
Browse repository at this point
Commits on Sep 23, 2025
Merged recent changes from 'main'
tieneupin
committed
569f326
View commit details
Copy full SHA for 569f326
Browse repository at this point
Updated CLEM preprocessing result registration workflow to parse new messsage formats
tieneupin
committed
cbf056e
View commit details
Copy full SHA for cbf056e
Browse repository at this point
Commits on Sep 24, 2025
Added logic to request for both bright field-fluorescent and fluorescent-only images to be created
tieneupin
committed
9c1ace9
View commit details
Copy full SHA for 9c1ace9
Browse repository at this point
Commits on Sep 25, 2025
Collapsed the LIF and TIFF preprocessing result registration functions into one single function that accepts messages from both workflows
tieneupin
committed
6d23984
View commit details
Copy full SHA for 6d23984
Browse repository at this point
Updated Murfey's analyser and context handler logic to support CLEM TIFF datasets of any combination of tiles, channels, or image stacks
Show description for ef7a976
tieneupin
committed
ef7a976
View commit details
Copy full SHA for ef7a976
Browse repository at this point
Renamed target recipes for CLEM workflows
tieneupin
committed
073bc72
View commit details
Copy full SHA for 073bc72
Browse repository at this point
Provide a seed TIFF file for the preprocessing workflow instead of the entire file list, as some datasets are too large to be submitted
tieneupin
committed
52b5a52
View commit details
Copy full SHA for 52b5a52
Browse repository at this point
Commits on Sep 26, 2025
Fixed broken tests due to change in recipe name
tieneupin
committed
6bbeec2
View commit details
Copy full SHA for 6bbeec2
Browse repository at this point
Use reference file from dataset to generate list of files to register
tieneupin
committed
0a8b28c
View commit details
Copy full SHA for 0a8b28c
Browse repository at this point
Delete dictionary entries for series from analyser memory after successfully sending it off
tieneupin
committed
5b15633
View commit details
Copy full SHA for 5b15633
Browse repository at this point
You can’t perform that action at this time.
