Optimise CLEM Data Transfer and Registration - #707

Merged

tieneupin merged 10 commits into

mainfrom

optimise-clem-logic

Dec 8, 2025

Commits on Dec 4, 2025

Added optional MachineConfig key to blacklist directories and files with certain string patterns from being transferred
tieneupin
committed
5b796b3

Commits on Dec 5, 2025

Added logic to blacklist files and folders based on provided substrings; added 'substrings_blacklist' as an attribute to the DirWatcher class
tieneupin
committed
17a725d
Pass substrings blacklist from machine config to DirWatcher when initialising it
tieneupin
committed
80de8b0
Register a dataset as an atlas based on the image width/height instead of based on keywords in the file path
tieneupin
committed
84d2e02

Commits on Dec 8, 2025