Register FIB data - #766

Merged

tieneupin merged 27 commits into

mainfrom

register-fib-data

Apr 8, 2026

Commits on Mar 25, 2026

Added placeholder function to register FIB atlas with
tieneupin
committed
097907b
Added FIB atlas registration workflow as an entry point
tieneupin
committed
d60f917
Added new router for the FIB workflow, with a POST function to register FIB atlas images
tieneupin
committed
19ff022
Updated FIBContext behaviour:
tieneupin
committed
0ac6891
Shortened class function name
tieneupin
committed
97d1091
Updated existing tests
tieneupin
committed
36ddac5
Added unit tests for the new API endpoint
tieneupin
committed
b84ecd7

Commits on Mar 26, 2026

Add additional columns to the 'ImagingSite' table to keep track of stage position, image field of view, and rotation
tieneupin
committed
d7ab0ee

Commits on Mar 27, 2026

Moved 'number_from_name' into a FIB utility module
tieneupin
committed
04cfb18
Import 'number_from_name' from new module instead
tieneupin
committed
ef07770
Fixed bug in backend call to make GIFs
tieneupin
committed
ee0c140
Reduced level of the log warning about file extension not being found
tieneupin
committed
bb94066
Revert "Import 'number_from_name' from new module instead"
tieneupin
committed
921be1b
Revert "Moved 'number_from_name' into a FIB utility module"
tieneupin
committed
287034e
Updated FIB atlas image registration workflow:
tieneupin
committed
b9da8a3
Use NumPy to convert images to 8-bit before creating GIFs
tieneupin
committed
a8230ee
Pass destination file paths to the GIF creating API endpoint
tieneupin
committed
c190238
Added unit test for the FIBContext for the AutoTEM post transfer workflow
tieneupin
committed
2f63156
More thorough test of 'post_transfer' behaviour for Maps workflow
tieneupin
committed
79e55b4

Commits on Mar 30, 2026

Merged recent changes from 'main' branch
tieneupin
committed
f24b6a3
Fixed broken test after merging changes from 'main'
tieneupin
committed
ddf274d
Update FIB atlas image registration logic
tieneupin
committed
e284292
Added test module for the 'register_atlas' FIB workflow
tieneupin
committed
3ca97cd
Added test for the '_parse_metadata' function
tieneupin
committed
99215b2
Added test for the GIF making endpoint function
tieneupin
committed
0aefb00
Merged recent changes from 'main' branch
tieneupin
committed
0d96dfe

Commits on Mar 31, 2026

Added logic to try searching for XML metadata in other tag keys found in FIB atlas file if it's not found under the default key
tieneupin
committed
1a64a85