Request processing of lamella evaluation images - #846
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…s functions that need them
tieneupin
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Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## main #846 +/- ##
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+ Coverage 54.44% 54.55% +0.11%
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Files 103 104 +1
Lines 11049 11078 +29
Branches 1467 1470 +3
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+ Hits 6016 6044 +28
- Misses 4713 4714 +1
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d-j-hatton
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Aug 6, 2026
* Created API endpoint to trigger the FIB lamella evaluation images workflow * Added placeholder workflow to register lamella evaluation images with * Added logic to FIBContext to detect and register lamella evaluation images * Moved the '_get_source' and '_file_transferred_to' logic into the class functions that need them * Updated tests
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Lamella evaluation images are high-resolution images of the sites during the last stages of the milling process. These images should be the ones displayed on the PATo frontend when users click on regions of interest on the atlas, in a similar vein to the CLEM workflow.
This PR adds logic to the
FIBContextto submit a POST request to the backend when it detects a lamella evaluation image. An API endpoint and a workflow module have also been set up on the backend to eventually process the received message. The processing logic will be refined in subsequent PRs, and currently just exists as a placeholder.Actual code diff is +117/-21, with the rest of the changes being due to the addition and modification of tests.