EmbryoPhenomics and Phenomyx
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embryo_segmentation
embryo_segmentation PublicModels, weights and scripts for semantic segmentation of embryos in microscopy images. Including popular CNNs such as UNet, PSPnet and DeepLabV3.
Python 3
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embryocv_data_view
embryocv_data_view PublicA little interactive app for visualising individual level phenome data from EmbryoCV.
Python 2
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LabEmbryoCam
LabEmbryoCam PublicHardware and software for building and running a LabEmbryoCam system for phenotyping aquatic embryos
Python 2
Repositories
- video-activity-scrubber Public
- PhenoChip Public
3D printable and/or laser cuttable flow-through culture cells for aquatic organisms.
- sparse_opticflow Public
- embryophenomics.github.io Public
- PhenoDrive Public
A platform for closing the loop between environmental control and organismal response
- heartcv Public
Software for automated quantification of cardiac traits from video of transparent animals.
- RoboCam Public
- barnacle-activity-classifier Public
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