CI: put pysceptre's scripts/ on PYTHONPATH for the Nextflow DAG step - #3

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emattei merged 3 commits into

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fix/ci-sceptre-io

Sep 28, 2026

Commits on Sep 26, 2026

Put pysceptre's scripts/ on PYTHONPATH in the CI Nextflow DAG step

emattei
and
claude
committed
9d522b5

Commits on Sep 28, 2026

Declare anndata and mudata in pyproject.toml, as pixi.toml already does

emattei
and
claude
committed
ba2e315
Run the CI stub under -profile stub, whose resource caps fit the runner

emattei
and
claude
committed
a49baea