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Update cogent3 requirement from >=2025.7.10a3 to >=2026.4.13a0#92

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dependabot/pip/cogent3-gte-2026.4.13a0
May 7, 2026
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Update cogent3 requirement from >=2025.7.10a3 to >=2026.4.13a0#92
GavinHuttley merged 1 commit into
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dependabot/pip/cogent3-gte-2026.4.13a0

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@dependabot dependabot Bot commented on behalf of github Apr 13, 2026

Updates the requirements on cogent3 to permit the latest version.

Changelog

Sourced from cogent3's changelog.

Changes in release "2026.4.13a0"

This is a minor bug-fix release.

Contributors

Bug fixes

  • Fixed a bug reported by @​rmca17 where adding two apps that involved composite types was broken. Now fixed!

Changes in release "2026.3.23a0"

Feature enhancement release.

Contributors

Enhancements

  • data store write_bib() now resolves the user home directory.
  • We now use typeguard for resolving app type hints during composition and data type checking at runtime. This means users can go-to-town on how complex their types are!
  • Hardened against circular imports due to the relationships between moltype and sequences.

Changes in release "2026.3.10a0"

A minor feature enhancement release.

Contributors

Enhancements

  • Added draw_annotations(vertical_spacing) argument to control space between the vertically stacked subplots resulting from using centered_on when max_seqids>1.
  • Refactored the coevolution statistics to using numba.prange for parallel execution. The main reason for this is to improve the

... (truncated)

Commits
  • 4e24dde Merge pull request #2619 from GavinHuttley/develop
  • de3e7cd DEV: bumped version to 2026.4.13a0
  • 2d45481 Merge pull request #2618 from GavinHuttley/develop
  • 2bb8cb2 BUG: app composition involving container types was broken
  • a873535 Merge pull request #2616 from cogent3/dependabot/pip/mypy-1.20.0
  • f7bd672 Merge pull request #2617 from cogent3/dependabot/pip/ruff-0.15.9
  • 59e3ad9 Bump ruff from 0.15.8 to 0.15.9
  • cae98fc Bump mypy from 1.19.1 to 1.20.0
  • 5642ccc Merge pull request #2615 from cogent3/dependabot/pip/ruff-0.15.8
  • 501d50d Bump ruff from 0.15.7 to 0.15.8
  • Additional commits viewable in compare view

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Updates the requirements on [cogent3](https://github.com/cogent3/cogent3) to permit the latest version.
- [Release notes](https://github.com/cogent3/cogent3/releases)
- [Changelog](https://github.com/cogent3/cogent3/blob/develop/changelog.md)
- [Commits](cogent3/cogent3@2025.7.10a3...2026.4.13a0)

---
updated-dependencies:
- dependency-name: cogent3
  dependency-version: 2026.4.13a0
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Apr 13, 2026
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Up to standards ✅

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@GavinHuttley GavinHuttley merged commit 567745c into develop May 7, 2026
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@dependabot dependabot Bot deleted the dependabot/pip/cogent3-gte-2026.4.13a0 branch May 7, 2026 00:56
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