Skip to content

Update cogent3 requirement from >=2026.4.13a0 to >=2026.4.20a0#94

Open
dependabot[bot] wants to merge 1 commit into
developfrom
dependabot/pip/cogent3-gte-2026.4.20a0
Open

Update cogent3 requirement from >=2026.4.13a0 to >=2026.4.20a0#94
dependabot[bot] wants to merge 1 commit into
developfrom
dependabot/pip/cogent3-gte-2026.4.20a0

Conversation

@dependabot
Copy link
Copy Markdown
Contributor

@dependabot dependabot Bot commented on behalf of github May 12, 2026

Updates the requirements on cogent3 to permit the latest version.

Changelog

Sourced from cogent3's changelog.

Changes in release "2026.4.20a0"

Major refactor underway! All of the app infrastructure has been moved into a new project -- scinexus.

Contributors

Discontinued

The following modules, classes and functions are deprecated in favour of their scinexus equivalents and will be removed in version 2026.9.

  • cogent3.util.warning module -- use scinexus.warning
  • cogent3.util.misc.extend_docstring_from -- use scinexus.misc.extend_docstring_from
  • cogent3.util.misc.docstring_to_summary_rest -- use scinexus.misc.docstring_to_summary_rest
  • cogent3.util.misc.get_object_provenance -- use scinexus.misc.get_object_provenance
  • cogent3.util.misc.in_jupyter -- use scinexus.misc.in_jupyter
  • cogent3.util.misc.is_url -- use scinexus.io_util.is_url
  • cogent3.util.io.open_url -- use scinexus.io_util.open_url
  • cogent3.util.io.is_url -- use scinexus.io_util.is_url
  • cogent3.util.io.open_zip -- use scinexus.io_util.open_zip
  • cogent3.util.io.path_exists -- use scinexus.io_util.path_exists
  • cogent3.util.io.remove_files -- use shutil instead
  • cogent3.util.io.open_ -- use scinexus.io_util.open_
  • cogent3.util.io.get_format_suffixes -- use scinexus.io_util.get_format_suffixes
  • cogent3.util.io.atomic_write class -- use scinexus.io_util.atomic_write
  • cogent3.util.io.iter_line_blocks -- use scinexus.io_util.iter_line_blocks
  • cogent3.util.io.iter_splitlines -- use scinexus.io_util.iter_splitlines
  • cogent3.util.parallel module -- use scinexus.parallel
  • cogent3.util.progress_display module -- use scinexus.progress
  • cogent3.util.deserialise module -- use scinexus.deserialise
  • cogent3.app.composable module -- use scinexus.composable
  • cogent3.app.data_store module -- use scinexus.data_store
  • cogent3.app.sqlite_data_store module -- use scinexus.sqlite_data_store

Changes in release "2026.4.13a0"

This is a minor bug-fix release.

Contributors

Bug fixes

  • Fixed a bug reported by @​rmca17 where adding two apps that

... (truncated)

Commits
  • 150d785 Merge pull request #2625 from GavinHuttley/develop
  • fad97dd DEV: bump version to 2026.4.20a0
  • 594376c MAINT: type hints and code tidy
  • 994fdd0 Merge pull request #2624 from GavinHuttley/develop
  • 289724f MAINT: explicitly choose loky backend for parallelisation
  • 08249ee DEV: use scinexus[loky] for install
  • 697124c ENH: show_progress accepts dict and Progress instances
  • 6a7f7a1 DOC: revise docs to move of app infrastructure to scinexus
  • 5094af7 Merge pull request #2623 from GavinHuttley/develop
  • 004f961 DEP: replaced deserialise functions with scinexus ones
  • Additional commits viewable in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

Updates the requirements on [cogent3](https://github.com/cogent3/cogent3) to permit the latest version.
- [Release notes](https://github.com/cogent3/cogent3/releases)
- [Changelog](https://github.com/cogent3/cogent3/blob/develop/changelog.md)
- [Commits](cogent3/cogent3@2026.4.13a0...2026.4.20a0)

---
updated-dependencies:
- dependency-name: cogent3
  dependency-version: 2026.4.20a0
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels May 12, 2026
@codacy-production
Copy link
Copy Markdown

Up to standards ✅

🟢 Issues 0 issues

Results:
0 new issues

View in Codacy

NEW Get contextual insights on your PRs based on Codacy's metrics, along with PR and Jira context, without leaving GitHub. Enable AI reviewer
TIP This summary will be updated as you push new changes.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

dependencies Pull requests that update a dependency file python Pull requests that update Python code

Projects

None yet

Development

Successfully merging this pull request may close these issues.

0 participants