Issues

• VEPPLUGIN_REVEL fails: grep -oP in the tabix version eval does not work in the bcftools:1.24 container (BusyBox grep)

  IntGenomicsLab/lrsomatic#217 · Filter by author laulambr opened on Oct 3, 2026

• Add SAVANA, padfoot and ReConPlot

  enhancement
  IntGenomicsLab/lrsomatic#192 · Filter by author Tim-Yu opened on Sep 9, 2026
  12

• add cram as desired output

  enhancement
  IntGenomicsLab/lrsomatic#178 · Filter by author ljwharbers opened on Jul 28, 2026

• update vep

  enhancement
  IntGenomicsLab/lrsomatic#177 · Filter by author ljwharbers opened on Jul 28, 2026

• Severus min support

  enhancement
  IntGenomicsLab/lrsomatic#173 · Filter by author AmberVerhasselt opened on Jun 9, 2026
  

• Create panel of normals using inhouse data

  enhancement
  IntGenomicsLab/lrsomatic#171 · Filter by author ljwharbers opened on Jun 9, 2026
  

• 1.2.0 roadmap

  enhancement
  IntGenomicsLab/lrsomatic#170 · Filter by author ljwharbers opened on Jun 9, 2026
  

• Add owl module

  enhancement
  IntGenomicsLab/lrsomatic#144 · Filter by author ljwharbers opened on Mar 13, 2026
  1

• Add Coral module

  enhancement
  IntGenomicsLab/lrsomatic#132 · Filter by author robert-a-forsyth opened on Mar 11, 2026

• Use longphase-s/longphases-to estimated purity as optional input for ascat/wakhan

  enhancement
  IntGenomicsLab/lrsomatic#112 · Filter by author ljwharbers opened on Dec 3, 2025

• Add longphase-S and longphaseS-TO modules

  enhancement
  IntGenomicsLab/lrsomatic#111 · Filter by author ljwharbers opened on Dec 3, 2025