Issues

• Can ALRA make imputation on CPM data?

  KlugerLab/ALRA#31 · Filter by author Alvis-Jiang opened on Oct 6, 2024

• In nrow(A_norm) * ncol(A_norm) : NAs produced by integer overflow

  KlugerLab/ALRA#30 · Filter by author haoqing12 opened on Apr 30, 2024

• Large matrix errors (more than 2^31-1 non-zero entries) [on large datasets]

  KlugerLab/ALRA#29 · Filter by author ghost opened on Feb 28, 2024
  3

• marker genes not specific for cluster after imputation

  KlugerLab/ALRA#27 · Filter by author yamihn opened on Dec 5, 2023

• help with alra

  KlugerLab/ALRA#26 · Filter by author mocherry opened on Nov 30, 2023
  1

• Which selection.method to use for FindingVariableFeatures on ALRA imputed data

  KlugerLab/ALRA#25 · Filter by author Rohit-Satyam opened on Jul 13, 2023
  2

• ALRAChooseKPlot throws error

  KlugerLab/ALRA#24 · Filter by author Rohit-Satyam opened on Jul 7, 2023
  1

• Differential expression

  KlugerLab/ALRA#22 · Filter by author DzenisKoca opened on Aug 19, 2022
  5

• Running ALRA with multiple samples

  KlugerLab/ALRA#21 · Filter by author msraredon opened on Jul 29, 2022
  11

• Final proportion of non-zero values is large.

  KlugerLab/ALRA#20 · Filter by author ayeTown opened on Jul 26, 2022
  2

• ALRA and Seurat

  KlugerLab/ALRA#17 · Filter by author jsim91 opened on May 20, 2022
  1

• Imputation before other QC steps?

  KlugerLab/ALRA#16 · Filter by author ayeTown opened on May 5, 2022

• GetAssayData(pbmc, slot = "counts") gives 0 x 0 matrix

  KlugerLab/ALRA#14 · Filter by author Lumskie opened on Feb 23, 2022
  1

• Error in asMethod(object)

  KlugerLab/ALRA#13 · Filter by author lf96abc opened on Jan 20, 2022

• During FindVariableFeatures after ALRA output, count slot is empty?

  KlugerLab/ALRA#12 · Filter by author lkqnaruto opened on May 14, 2021

• Tips for larger matrices?

  KlugerLab/ALRA#11 · Filter by author PedroMilanezAlmeida opened on Jan 12, 2021
  3

• Can I use ALRA imputed matrix to perform the Find Marker Gene step ?

  KlugerLab/ALRA#10 · Filter by author ghost opened on Dec 14, 2020
  2

• big data set and K

  KlugerLab/ALRA#8 · Filter by author yuGithuuub opened on May 19, 2020
  2

• Imputing integrated data

  KlugerLab/ALRA#5 · Filter by author kvshams opened on Aug 2, 2019
  1