Issues

• Seurat assay to use

  KlugerLab/GeneTrajectory#18 · Filter by author Santos22903 opened on Jul 18, 2025

• Seurat v5 Issues

  KlugerLab/GeneTrajectory#17 · Filter by author parkjooyoung99 opened on Apr 1, 2025

• python virtual environment created successfully function call problem

  KlugerLab/GeneTrajectory#16 · Filter by author Angle28 opened on Nov 20, 2024

• python virtual environment created successfully function call problem

  KlugerLab/GeneTrajectory#15 · Filter by author Angle28 opened on Nov 20, 2024
  2

• gene order

  KlugerLab/GeneTrajectory#14 · Filter by author WG20231 opened on Oct 10, 2024

• How to solve the problem when Compute the Diffusion Map cell embedding

  KlugerLab/GeneTrajectory#13 · Filter by author giyuu28 opened on Jul 26, 2024

• "How to resolve the error encountered during the process of importing the function to compute gene-gene distances?"

  KlugerLab/GeneTrajectory#12 · Filter by author maaa-a opened on Jun 18, 2024
  3

• How to determine optimum number of trajectories/diffusion times?

  KlugerLab/GeneTrajectory#10 · Filter by author sc30301 opened on Jun 9, 2024
  2

• Visualize Gene bin score or plot

  KlugerLab/GeneTrajectory#9 · Filter by author TreetoForest opened on May 8, 2024

• No cell overlap between new meta data and Seurat object

  KlugerLab/GeneTrajectory#8 · Filter by author handesome opened on May 3, 2024
  2

• how to plot the label of genes in 3d plot?

  KlugerLab/GeneTrajectory#7 · Filter by author feanaros opened on Apr 22, 2024
  3

• is possible to compare conditions?

  KlugerLab/GeneTrajectory#6 · Filter by author feanaros opened on Apr 21, 2024
  1

• There is no output even a warning, when I compute gene-gene distances with the function cal_ot_mat_from_numpy.

  KlugerLab/GeneTrajectory#5 · Filter by author Fufu-Hu opened on Apr 19, 2024
  8

  

• Issue with compute gene-gene distances

  KlugerLab/GeneTrajectory#4 · Filter by author chen-peng-1874 opened on Apr 19, 2024
  15