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1. suvtk suvtk Public

   Tool to submit viral sequences to Genbank.

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2. pyrodigal-rv pyrodigal-rv Public

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   A Pyrodigal extension to predict genes in RNA viruses.

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3. annotation_benchmark annotation_benchmark Public

   Benchmarking different annotation methods for viral genomes (blast, diamond, mmseqs, TEA, foldseek and reseek) against the Big Fantastic Virus Database.

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4. genomad genomad Public

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5. add_pyrodigal_rv_models add_pyrodigal_rv_models Public

   Repository with notebooks on how the RNA virus models for pyrodigal-rv were created and benchmarked.

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6. SKA-analysis SKA-analysis Public template

   Perform Split K-mer Analysis to identify sample species (based on k-mers in NGS reads).

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