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Add a how-to for running GuPPy in a container - #569

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pauladkisson merged 4 commits into
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container_docs
Oct 16, 2026
Merged

pauladkisson merged 4 commits into
mainfrom
container_docs

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@pauladkisson

@pauladkisson pauladkisson commented Oct 16, 2026 •

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Split out of #560, which builds and publishes the image this page describes.

  • docs/how-to/run-in-a-container.md: Docker, and Apptainer on a shared cluster with an SSH tunnel. Linked from the how-to index and the installation page.
  • sphinx-copybutton added to the docs build for copy buttons on code blocks.

ghcr.io/lernerlab/guppy is public. Until the next release only the main tag exists, pushed by a manual dispatch after #560 merged, so test the page with :main in place of :latest. latest is created by the next published release. Preview: https://guppy--569.org.readthedocs.build/how-to/run-in-a-container.html

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pauladkisson and others added 2 commits October 16, 2026 11:42
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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codecov Bot commented Oct 16, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.

📢 Thoughts on this report? Let us know!

Base automatically changed from containerize to main October 16, 2026 21:28
@pauladkisson
pauladkisson marked this pull request as ready for review October 16, 2026 22:10
@pauladkisson
pauladkisson merged commit 31d07a7 into main Oct 16, 2026
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@pauladkisson
pauladkisson deleted the container_docs branch October 16, 2026 22:35
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